BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044351
(1172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/1236 (39%), Positives = 679/1236 (54%), Gaps = 200/1236 (16%)
Query: 15 ANEVSPAKDVISPSKSKQKK-KLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNR 73
A VSP KD S SK+KQ+K KLSD LGPQWSK EL+RFYE YR +GK+WKKVA V +R
Sbjct: 17 AKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYRKFGKEWKKVAGFVHSR 76
Query: 74 SAEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEG-SDSERESNDASEMPRKSQ 132
SAEMVEALY MN+AYLSLPEGTASVVGL AMMTDHY+V+ G SDSE+E+N+ E PR +
Sbjct: 77 SAEMVEALYTMNKAYLSLPEGTASVVGLTAMMTDHYSVLHGGSDSEQENNEGIETPRSAP 136
Query: 133 KRKRAKV--QLSASKEDISQSWSMAATGGCLSLLKRSRIDGNQPRAVKKRTPRFPVSYSQ 190
KR R K S E +S ++ G + LK+ R + PRAV KRTPR P+SY+
Sbjct: 137 KRSRVKSSDHPSIGLEGLSDRLQFRSSSGFMPSLKKRRTE-TMPRAVGKRTPRIPISYTL 195
Query: 191 KKDDRDDYIPLNKKDRRSAVDANDDEVAHVAALALTEASQRGGSPQVSQSPHKKTEHGKS 250
+KD R+ Y+ K+ D DD++ H ALAL EASQRGGS + S +P++K
Sbjct: 196 EKDTRERYLSPVKRGLNQKGDDTDDDMEHEIALALAEASQRGGSTKNSHTPNRKA----- 250
Query: 251 SPVQIWDKMFPP---AETAHPDAREALN-------EEGCPEARILNRRPENGAYTRARKS 300
KM+PP E D A+ E+ E + + +N Y+ R
Sbjct: 251 -------KMYPPDKKGERMRADIDLAIAKLHATDMEDVRCEPSLGSTEADNADYSGGRND 303
Query: 301 LMDMEGVGTVEVHRKGKKFYRKKMKVEEVRNSLSDDEGEACSGTEEG--LSSRKGKVGSE 358
L EG VE +KG+ +YR+++ ++E +D EACSGT+E L + K E
Sbjct: 304 LTHGEGSSAVEKQQKGRTYYRRRVGIKE------EDAKEACSGTDEAPSLGAPDEKFEQE 357
Query: 359 ISNAKNDHLPLQMQRKRSKK-LFFGDESTALNALQTLADLSLMLPDSTMESESSVQLKEE 417
K ++ R++SKK LF DE TA +AL TLADLSLM+P++ ++ESSVQ +E+
Sbjct: 358 -REGKALKFTYKVSRRKSKKSLFTADEDTACDALHTLADLSLMMPETATDTESSVQAEEK 416
Query: 418 RT--AFDIDDKSSAPEETSTSHPKEKIKHLGPKEKALNTITEAEDIIPRKSKLGRYSGND 475
+ A+ D K + P S K +L R SK RY ND
Sbjct: 417 KAGEAYVSDFKGTDPASMS-------------KSSSL-----------RNSKQRRYGSND 452
Query: 476 VETVAEVKEQPEPPNSMSKRKRKSVLSKKISNS----EAVTDTHMTRTLESEAVAEEHNK 531
+ E+ P +S+ +++R+ L K+ + E + + S+ + EE+ K
Sbjct: 453 L--CNPELERKSPSSSLIQKRRQKALPAKVRENVLKDELAASSQVIEPCNSKGIGEEY-K 509
Query: 532 FASKGKRTS--QNSAQSKQWKPGRVLEGSSVNDQNRASIDLVAPTGQAP----VASPASS 585
+GKR++ +NS + K K +D +S ++V AP + +
Sbjct: 510 PVGRGKRSASIRNSHEKKSAKS---------HDHTSSSNNIVEEDESAPSNAVIKKQVNL 560
Query: 586 PTKHQSRRKMDLKRKLSSKEMKFSENSLKTQPNKNSLSQEDRLLSMKEKLSGCLSSNMVR 645
PTK +SRRK+ ++ L+ + K SE EK S C+SS R
Sbjct: 561 PTKVRSRRKIVTEKPLTIDDGKISETI--------------------EKFSHCISSFRAR 600
Query: 646 RWCTFEWFYSAIDYPWFSNREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFL 705
RWC FEWFYSAIDYPWF+ +EFVEYL+HVGLGH+PRLTRVEWGVIRSSLGKPRR S++FL
Sbjct: 601 RWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFL 660
Query: 706 HDEREKLKQYRES----------------------------RVIAIHPKTRELHDGSVLT 737
+E+EKL YR+S RVI +HPK+RE+HDG+VLT
Sbjct: 661 KEEKEKLYLYRDSVRKHYDELNTGMREGLPMDLARPLNVSQRVICLHPKSREIHDGNVLT 720
Query: 738 IDHDKCRVQFDRPELGVEFVMDIDSMPSNPLDNMPEALRRQISADKF---SAISKELQVN 794
+DH + R+QFD PELGVEFV D + MP NPL+NMP +L R + + + I +++
Sbjct: 721 VDHCRYRIQFDNPELGVEFVKDTECMPLNPLENMPASLARHYAFSNYHIQNPIEEKMHER 780
Query: 795 GHPNF--GSPMLFASDGHLEKAPI--LPNTLQKQAKGDMNHALPQAKSLATDIVSAQQAA 850
+ G P L GHL +P + N+L KQ K D++ + PQA+ D A Q
Sbjct: 781 AKESMLEGYPKLSCETGHLLSSPNYNISNSL-KQEKVDISSSNPQAQD-GVDEALALQLF 838
Query: 851 YGQLCTVPQIQAREATVRALSE--------EALLMELKNTNNDILESQ-NGGESSLKDSE 901
Q ++ QIQAREA V+ALSE E +L ELK N++++ESQ +G ++LKDSE
Sbjct: 839 NSQPSSIGQIQAREADVQALSELTRALDKKELVLRELKCMNDEVVESQKDGHNNALKDSE 898
Query: 902 PLKKHIATVLVQLKEANDQACGFRELCFGISCYLSLQFHTLTWRRSLIDCFDMQASSALL 961
KK A VL QL E N+Q S ALL
Sbjct: 899 SFKKQYAAVLFQLSEINEQV-----------------------------------SLALL 923
Query: 962 QVRQCNTHPES------SRPSWPMHPANVKMLDNSHVSQESGSAVAEIVNGSRLKAHTMV 1015
+RQ NT+ E+ R S P ++++ S +G V+EIV SR+KA MV
Sbjct: 924 GLRQRNTYQENVPYSSIRRMSKSGEPDGQLTYEDNNASDTNGFHVSEIVESSRIKARKMV 983
Query: 1016 DAAVKAMSSVKEGEDAYTKIGEALDHIDKRQLTSDPRVSVIRSPEQVNGSLGHHNHFVSG 1075
AV+A+ +++ E+ + EA+D ++ QL+ D V + G + +
Sbjct: 984 YRAVQALELLRKDENNNVNMEEAIDFVNN-QLSIDQTEG-----SSVQQTQGGQDQRLPS 1037
Query: 1076 TCDPQPTNNASGTKLQDVSDKNEAQIPSELITSCVATLLMIQTCTERHTP-ADVAQIIDS 1134
T +P + A+ + L + D+N+ Q+PS+L++ C+ATLLMIQ CTER P ++VAQ++DS
Sbjct: 1038 TPNPPSSTPANDSHL-NQPDQNDLQVPSDLVSRCIATLLMIQKCTERQFPPSEVAQVLDS 1096
Query: 1135 AVSSLHPCCPQNLPIYREIEMCMGRIKTQILALIPT 1170
AV+SL PCC QNLPIY EI+ CMG I+ QILAL+P+
Sbjct: 1097 AVASLQPCCSQNLPIYTEIQKCMGIIRNQILALVPS 1132
>sp|Q6A333|ALY2_ARATH Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
Length = 1051
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/917 (47%), Positives = 574/917 (62%), Gaps = 69/917 (7%)
Query: 1 MAPTRKSRSVNKRYANEVSPAKDVISPSKSKQKKKLSDKLGPQWSKGELQRFYEAYRNYG 60
MAP RKSRSVNKR+ NE SP KD K+K +KKLSDKLGPQW++ EL+RFY+AYR +G
Sbjct: 1 MAPVRKSRSVNKRFTNETSPRKDAGKSKKNKLRKKLSDKLGPQWTRLELERFYDAYRKHG 60
Query: 61 KDWKKVAAQVRN-RSAEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGSDSER 119
++W++VAA +RN RS +MVEAL+NMNRAYLSLPEGTASV GLIAMMTDHY+VMEGS SE
Sbjct: 61 QEWRRVAAAIRNSRSVDMVEALFNMNRAYLSLPEGTASVAGLIAMMTDHYSVMEGSGSEG 120
Query: 120 ESNDASEMPRKSQKRKRAKVQLSASKEDISQSWSMAATGGCLSLLKRSRIDGNQPRAVKK 179
E +DASE+PRK QKRKRAK Q S S E++ S+ + GCL+ LK++R +G Q A K
Sbjct: 121 EGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTFLKQARANGTQRHATGK 180
Query: 180 RTPRFPVSYSQKKDDRDDYIPLNKKDRRSAVDANDDEVAHVAALALTEASQRGGSPQVSQ 239
RTPR PV S +DDR+ P NK+ R+ DANDD VAH ALALT+AS+RGGSP+VS+
Sbjct: 181 RTPRVPVQTSFMRDDREGSTPPNKRARKQ-FDANDD-VAHFLALALTDASRRGGSPKVSE 238
Query: 240 SPHKKTEHGKSSPVQIWDKMFPPAETAHPDAREALNEEGCPEARILNRRPENGAYTRARK 299
SP+++TE SSP++ W KM ++ ++ EE +R R+ ++ T
Sbjct: 239 SPNRRTELSDSSPIKSWGKMSRTRKSQSKHCGSSIFEEWMESSR--ERKLDSDKDTTL-- 294
Query: 300 SLMDMEGVGTVEVHRKGKKFYRKKMKVEEVRNSLSDDEGEACSGTEEGLSSRKGKVGSEI 359
LMDME G +E RKGK+ Y+K++KVEE + SDD GEACS T +GL S+ + + I
Sbjct: 295 -LMDMERAGEMEAPRKGKRVYKKRVKVEEAECNDSDDNGEACSAT-QGLRSKSQRRKAAI 352
Query: 360 SNAKNDHLPLQMQRKRSKKLFFGDESTALNALQTLADLSL-MLPDSTMESESSVQLKEER 418
++ + P + +KR K G A +ALQ LA+LS MLP + MESE S QLKEER
Sbjct: 353 EASREKYSP-RSPKKRDDKHTSG----AFDALQALAELSASMLPANLMESELSAQLKEER 407
Query: 419 TAFDIDDKSSAPEETSTSHPKEKIKHLGPKEKALNTITEAEDIIPRKSKLGRYSGNDVET 478
T +D+D+KSS PE TSTS EK ++ P + L+ I+ E+ RKSK R D +
Sbjct: 408 TEYDMDEKSSTPEATSTSSHGEKA-NVEPDDSLLHAISSVENANKRKSKPSRLVSTDCDD 466
Query: 479 VAEVKEQPEPPNSMSKRKRKSVLSKKISNSEAVTDTHMTRTLESEAVAEEHNKFAS--KG 536
V K QP+ S+ KRK K+ EA + +++ + + ++ N S K
Sbjct: 467 VPTGKLQPQTSGSLRKRK------PKVLGDEAPAEFSQNKSINKKELPQDENNMKSLVKT 520
Query: 537 KRTSQNSAQSKQWKPGRVLEGSSV-NDQNRASIDLVAPTGQAPVASPASSPTKHQSRRKM 595
KR Q AQSKQ K + LE S++ +D+ R +D+VA Q + P S K +RRK
Sbjct: 521 KRAGQVPAQSKQMKTVKALEESAITSDKKRPGMDIVASPKQVSDSGPTSLSQKPPNRRKK 580
Query: 596 DLKRKLSSKEMKFSENSLKTQPNKNSLSQEDRLLSMKEKLSGCLSSNMVRRWCTFEWFYS 655
L++ L K K SE + K + SLS+++ LL K+KL+ LS RR C FEWFYS
Sbjct: 581 SLQKSLQEK-AKSSETTHKAARSSRSLSEQELLL--KDKLATSLSFPFARRRCIFEWFYS 637
Query: 656 AIDYPWFSNREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFLHDEREKLKQY 715
AID+PWFS EFV+YLNHVGLGHIPRLTR+EW VI+SSLG+PRR S+RFLH+EREKLKQY
Sbjct: 638 AIDHPWFSKMEFVDYLNHVGLGHIPRLTRLEWSVIKSSLGRPRRFSERFLHEEREKLKQY 697
Query: 716 RES----------------------------RVIAIHPKTRELHDGSVLTIDHDKCRVQF 747
RES RVIAIHPKTRE+HDG +LT+DH+KC V F
Sbjct: 698 RESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHPKTREIHDGKILTVDHNKCNVLF 757
Query: 748 DRPELGVEFVMDIDSMPSNPLDNMPEALRRQISADKFSAISKELQVNGHPNFGSPMLFAS 807
D +LGVE VMDID MP NPL+ MPE LRRQI DK ++ KE Q++G+ N G +LF
Sbjct: 758 D--DLGVELVMDIDCMPLNPLEYMPEGLRRQI--DKCLSMKKEAQLSGNTNLGVSVLFPP 813
Query: 808 DGHLEKAPILPNTLQKQAKGDMNHALPQAKSLATDIVSAQQAAYGQLCTV-----PQIQA 862
G LE N Q GDM + K ++++ S +Q + + T +IQ
Sbjct: 814 CG-LENVSFSMNPPLNQ--GDMIAPILHGK-VSSNTSSPRQTNHSYITTYNKAKEAEIQR 869
Query: 863 REATVRALSEEALLMEL 879
+A AL E+ + E+
Sbjct: 870 AQALQHALDEKEMEPEM 886
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 126/171 (73%), Gaps = 9/171 (5%)
Query: 1002 EIVNGSRLKAHTMVDAAVKAMSSVKEGEDAYTKIGEALDHIDKRQLTSDPRVSVIRSPEQ 1061
EIV GS+ +A MVDAA+KA SSVKEGED T I EAL+ + K QL R S+++ E
Sbjct: 888 EIVKGSKTRAQAMVDAAIKAASSVKEGEDVNTMIQEALELVGKNQLL---RSSMVKHHEH 944
Query: 1062 VNGSL-GHHNHFVSGTCDPQPTNNASGTKLQDVSDKNEAQIPSELITSCVATLLMIQTCT 1120
VNGS+ HHN S +P N+ + QD S+KN AQ+PSELITSCVAT LMIQ CT
Sbjct: 945 VNGSIEHHHNPSPSNGSEPVANNDLNS---QDGSEKN-AQMPSELITSCVATWLMIQMCT 1000
Query: 1121 ER-HTPADVAQIIDSAVSSLHPCCPQNLPIYREIEMCMGRIKTQILALIPT 1170
ER + PADVAQ+ID+AV+SL P CPQNLPIYREI+ CMGRIKTQI++L+PT
Sbjct: 1001 ERQYPPADVAQLIDAAVTSLQPRCPQNLPIYREIQTCMGRIKTQIMSLVPT 1051
>sp|Q6A331|ALY1_ARATH Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana GN=ALY1 PE=2 SV=2
Length = 971
Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust.
Identities = 369/843 (43%), Positives = 485/843 (57%), Gaps = 144/843 (17%)
Query: 1 MAPTRKSRSVNKRYANEVSPAKDVISPSKSKQ-KKKLSDKLGPQWSKGELQRFYEAYRNY 59
MAPTRKS+SVNKR+ NE SP + S SK+KQ KKKL+DKLGPQW+K EL RFY+AYR Y
Sbjct: 1 MAPTRKSKSVNKRFTNEASPDINFGSASKTKQRKKKLADKLGPQWTKRELVRFYDAYRKY 60
Query: 60 GKDWKKVAAQVRN-RSAEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGSDSE 118
DWKKVAA VRN RS EMVE L+ MNRAYLSLPEGTASV GLIAMMTDHY+VMEGS+SE
Sbjct: 61 VGDWKKVAAAVRNNRSVEMVETLFCMNRAYLSLPEGTASVAGLIAMMTDHYSVMEGSESE 120
Query: 119 RESNDASEMPRKSQKRKRAKVQLSASKEDISQSWSMAATGGCLSLLKRSRIDGNQPRAVK 178
E +DASE+ RK KRKR +V S +E++ S+A+ GCLS LK+++ + RA
Sbjct: 121 GEDHDASEVTRKHLKRKRPQVLPSDFREEVVPPHSVASVEGCLSFLKQTQAYEKRQRATG 180
Query: 179 KRTPRFPVSYSQKKDDRDDYIPLNKKDRRSAVDANDDEVAHVAALALTEASQRGGSPQVS 238
KRTPRF V+ + ++DD +D+ P NK+ ++ +DA+DD AS+RGG
Sbjct: 181 KRTPRFLVAITHERDDIEDFSPPNKRAKKQ-LDADDD------------ASRRGGG---- 223
Query: 239 QSPHKKTEHGKSSPVQIWD-KMFPPAETAHPDAREALNEEGCPEARILNRRPENGAYTRA 297
SP+++ E + +P ++ A+ HPD+ ++ E G + +R + GA R
Sbjct: 224 -SPYRRKELSEITPTRLRKTSQAQEAQFKHPDS--SMFENG-----VRDRWHKKGAADRD 275
Query: 298 RKSLMDMEGVGTVEVHRKGKKFYRKKMKVEEVRNSLSDDEGEACSGTEEGLSSRKGKVGS 357
LMDMEG+ T + K ++VEE EG
Sbjct: 276 GALLMDMEGLVTQK---------EKIVRVEEA-------EGN------------------ 301
Query: 358 EISNAKNDHLPLQMQRKRSKKLFFGDESTALNALQTLADLSLML-PDSTMESESSVQLKE 416
+ D+ L AL+TLA++S L P +ESESS +E
Sbjct: 302 -----------------------YSDDDDGLGALKTLAEMSASLAPAGLLESESSPHWEE 338
Query: 417 ERTAFDIDDKSSAPEETSTSHPKEKIKHLGPKEKALNTITEAEDIIPRKSKLGRYSGNDV 476
ER ++D KS+ E STSH +EK K G ++ L+ I+ + P KS GN V
Sbjct: 339 ERKTNNVDKKSNTLETVSTSHHREKAKQAGLEDNLLHAISAPDKRKP-KSVPESVDGN-V 396
Query: 477 ETVAEVKEQPEPPNSMSKRKRKSVLSKKISNSEAVTDTHMTRTLESEAVAEEHNKFASKG 536
++ E++ S KRK K + ++ E+ D + T ES V + K K
Sbjct: 397 VSIEELR------TSSRKRKPKFQVLDVVAPKESTQDKSLY-TKESAEV--DSLKTPVKA 447
Query: 537 KRTSQNSAQSKQWKPGRV-LEGSSVNDQNRASIDLVAPTGQAPVASPASSPTKHQSRRKM 595
+R+SQ A KQ K + +E SS +D+ D V P Q + P + P K +RRK+
Sbjct: 448 RRSSQGPA--KQLKTAKTTVESSSASDKKITGPDAVVPATQVSASGPETLPQKPPNRRKI 505
Query: 596 DLKRKLSSKEMKFSENSLKTQPNK----NSLSQEDRLLSMKEKLSGCLSSNMVRRWCTFE 651
LK+ L + SL+T +K LS+ + L +EKLS CLS +VRRWC +E
Sbjct: 506 SLKKSLQERA-----KSLETTHDKPRSFKKLSEHELL---QEKLSNCLSYPLVRRWCIYE 557
Query: 652 WFYSAIDYPWFSNREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFLHDEREK 711
WFYSAIDYPWF+ EF +YLNHVGLGH PRLTRVEW VI+SSLG+PRRLS+RFL DER+K
Sbjct: 558 WFYSAIDYPWFAKMEFTDYLNHVGLGHAPRLTRVEWSVIKSSLGRPRRLSQRFLQDERDK 617
Query: 712 LKQYRES----------------------------RVIAIHPKTRELHDGSVLTIDHDKC 743
L++YRES RVIAIHPKTRE+ DG +LT+DH+KC
Sbjct: 618 LQEYRESVRKHYTELRGCATGVLHTDLARPLSVGNRVIAIHPKTREIRDGKILTVDHNKC 677
Query: 744 RVQFDRPELGVEFVMDIDSMPSNPLDNMPEALRRQISADKFSAISKELQVNGHPNFGSPM 803
V FD ELGVE VMDID MP NPL+ MPE LRRQI DK AI KE ++N HP+ + +
Sbjct: 678 NVLFD--ELGVELVMDIDCMPLNPLEYMPEGLRRQI--DKCLAICKEARLNRHPSSDASV 733
Query: 804 LFA 806
LF+
Sbjct: 734 LFS 736
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
Query: 987 LDNSHVSQESGSAVAEIVNGSRLKAHTMVDAAVKAMSSVKEGEDAYTKIGEALDHIDKRQ 1046
L ++ +QE + EIV S+ A MVDAA+KA SS K ED+ + +AL I + Q
Sbjct: 793 LQHTSDAQEMEPEMIEIVIESKSIAQAMVDAAIKAASSGKNNEDSENMVHQALSSIGEHQ 852
Query: 1047 LTSDPRVSVIRSPEQVNGSLGHHNHFVSGTCDPQPTNNASGTKLQDVSDKNEAQIPSELI 1106
+ V I+ E NGSL HH+ T +P ++G Q+ S KN+ +PSELI
Sbjct: 853 PLDNSIVPGIKHQEYTNGSLDHHS---LNTAEPM----SNGFISQEGSGKNKTPMPSELI 905
Query: 1107 TSCVATLLMIQTCTER-HTPADVAQIIDSAVSSLHPCCPQNLPIYREIEMCMGRIKTQIL 1165
TSCVA+ LM+Q +++ + PADVAQ++D+ V+ L P CPQN+PIYREI+ CMG IKTQI+
Sbjct: 906 TSCVASWLMMQMISKKQYPPADVAQLMDTVVNDLQPRCPQNMPIYREIQTCMGLIKTQIM 965
Query: 1166 ALIPTS 1171
AL+ TS
Sbjct: 966 ALVRTS 971
>sp|Q5RHQ8|LIN9_DANRE Protein lin-9 homolog OS=Danio rerio GN=lin9 PE=2 SV=1
Length = 543
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 42/229 (18%)
Query: 585 SPTKHQSRRKM---DLKRKLSSKEMKFSENSLKTQPNK-NSLSQEDRLLSMK--EKLSGC 638
+PT+ R ++ D +R ++S+ + S+ + T P K +++ D+ +S K +L
Sbjct: 52 TPTRSSKRSRLSCEDEERPIASRSPRRSQR-VTTMPQKLTNVATPDKRVSQKIGLRLRNL 110
Query: 639 LSSNMVRRWCTFEWFYSAIDYPWF-SNREFVEYLNHVGLGHIPR-LTRVEWGVIRSSLGK 696
L +WC +EWFYS ID P F + +F L R LTRVEWG IR +GK
Sbjct: 111 LKLPKAHKWCIYEWFYSNIDRPLFEGDNDFCLCLKESFPNLKTRKLTRVEWGTIRRLMGK 170
Query: 697 PRRLSKRFLHDEREKLKQYRESR-------------------------VIA--IHPKTRE 729
PRR S F +ER LKQ R+ VI + + R
Sbjct: 171 PRRCSSAFFAEERMALKQKRQKMRLLQQRKITDMSLCKDLPDEIPLPLVIGTKVTARLRG 230
Query: 730 LHDG----SVLTIDHDKC--RVQFDRPELGVEFVMDIDSMPSNPLDNMP 772
+HDG + +D RV FDR LG V D + + + P + MP
Sbjct: 231 VHDGLFTGQIDAVDTSAATYRVTFDRNGLGTHTVPDYEVLSNEPHETMP 279
>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1
Length = 542
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 634 KLSGCLSSNMVRRWCTFEWFYSAIDYPWF-SNREFVEYLNHVGLGHIPR-LTRVEWGVIR 691
+L L +WC +EWFYS ID P F + +F L R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 692 SSLGKPRRLSKRFLHDEREKLKQYRE------SRVIA---------------------IH 724
+GKPRR S F +ER LKQ R+ R +A +
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 725 PKTRELHDG----SVLTID--HDKCRVQFDRPELGVEFVMDIDSMPSNPLDNMPEA 774
+ R +HDG + +D + RV FDR LG + D + + + P + MP A
Sbjct: 228 ARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIA 283
>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1
Length = 542
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 634 KLSGCLSSNMVRRWCTFEWFYSAIDYPWF-SNREFVEYLNHVGLGHIPR-LTRVEWGVIR 691
+L L +WC +EWFYS ID P F + +F L R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 692 SSLGKPRRLSKRFLHDEREKLKQYRE------SRVIA---------------------IH 724
+GKPRR S F +ER LKQ R+ R +A +
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 725 PKTRELHDG----SVLTID--HDKCRVQFDRPELGVEFVMDIDSMPSNPLDNMPEA 774
+ R +HDG + +D + RV FDR LG + D + + + P + MP A
Sbjct: 228 ARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIA 283
>sp|Q8C735|LIN9_MOUSE Protein lin-9 homolog OS=Mus musculus GN=Lin9 PE=2 SV=2
Length = 542
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 634 KLSGCLSSNMVRRWCTFEWFYSAIDYPWF-SNREFVEYLNHVGLGHIPR-LTRVEWGVIR 691
+L L +WC +EWFYS ID P F + +F L R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 692 SSLGKPRRLSKRFLHDEREKLKQYRE------SRVIA---------------------IH 724
+GKPRR S F +ER LKQ R+ R +A +
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 725 PKTRELHDG----SVLTID--HDKCRVQFDRPELGVEFVMDIDSMPSNPLDNMP 772
+ R +HDG + +D + RV FDR LG + D + + + P + MP
Sbjct: 228 ARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMP 281
>sp|P30630|LIN9_CAEEL Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3
Length = 644
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Query: 613 LKTQPNKNSLSQEDRLLSMKEKLSGCLSSNMVRRWCTFEWFYSAIDYPWF-SNREFVEYL 671
KT N+ S + + +KL L R+W E+FYSAID F EF +
Sbjct: 186 FKTYKNQTSEDVSTFMRANIKKLYNLLRYKKARQWVMCEFFYSAIDEQIFKEENEFATII 245
Query: 672 NHVGLGHIPRL-----TRVEWGVIRSSLGKPRRLSKRFLHDEREKLKQYRESRVIAIHPK 726
P L TR+EW IR LGKPRR SK F +ER L++ R K
Sbjct: 246 RE----SFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRM--------K 293
Query: 727 TRELHDGSVL---TIDHDKCRVQFDRP 750
R +++GS L +ID + RP
Sbjct: 294 IRSVYEGSYLNDPSIDLKDLPAKLPRP 320
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 28 SKSKQKKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAE 76
S+ +K K+ +++ WSK +LQ+ + + +G DW KVA V N+S E
Sbjct: 511 SRPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 32 QKKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRS 74
++ ++S++ P+WS E+ EA +YG DWKKVA+ V R+
Sbjct: 216 KRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRT 258
>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1
PE=1 SV=1
Length = 1120
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 291 NGAYTRARKSLMDMEGVGTVEVHRKGKKFYRKKMKVEEVRNSLS--DDEGEACSGTEEGL 348
NGA + + E + +EV+R KF K KVE+++ LS D +GE GL
Sbjct: 411 NGALSSEERE----EEMKQMEVYRSHSKFM--KNKVEQLKEELSSKDAQGEELKKRAAGL 464
Query: 349 SSRKGKVGSEISNAKNDHLPLQ 370
S G+V E+S + L LQ
Sbjct: 465 QSEIGQVKQELSRKDTELLALQ 486
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,670,121
Number of Sequences: 539616
Number of extensions: 17445528
Number of successful extensions: 46711
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 309
Number of HSP's that attempted gapping in prelim test: 45943
Number of HSP's gapped (non-prelim): 906
length of query: 1172
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1043
effective length of database: 121,958,995
effective search space: 127203231785
effective search space used: 127203231785
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)