Query 044351
Match_columns 1172
No_of_seqs 108 out of 116
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1019 Retinoblastoma pathway 100.0 6.3E-93 1.4E-97 824.4 11.7 800 1-1047 1-832 (837)
2 PF06584 DIRP: DIRP; InterPro 99.9 1.1E-27 2.5E-32 228.1 7.6 66 653-718 1-67 (109)
3 KOG1019 Retinoblastoma pathway 99.9 2.1E-28 4.6E-33 287.1 0.4 659 174-893 1-717 (837)
4 PF00249 Myb_DNA-binding: Myb- 98.2 2.4E-06 5.3E-11 70.3 5.8 43 43-85 3-47 (48)
5 smart00717 SANT SANT SWI3, AD 98.0 1.9E-05 4.1E-10 62.0 5.8 44 41-84 1-45 (49)
6 cd00167 SANT 'SWI3, ADA2, N-Co 97.9 2.1E-05 4.5E-10 61.0 5.4 42 43-84 1-43 (45)
7 TIGR01557 myb_SHAQKYF myb-like 97.6 8.3E-05 1.8E-09 64.9 5.2 45 42-86 4-54 (57)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.00033 7.2E-09 59.6 5.2 41 44-84 1-41 (60)
9 PLN03212 Transcription repress 95.8 0.011 2.5E-07 64.8 5.0 42 42-83 79-120 (249)
10 COG5259 RSC8 RSC chromatin rem 94.8 0.025 5.4E-07 66.5 3.9 47 41-93 279-325 (531)
11 PLN03091 hypothetical protein; 94.2 0.059 1.3E-06 63.3 5.3 43 42-84 68-110 (459)
12 KOG1279 Chromatin remodeling f 92.5 0.12 2.5E-06 62.0 4.1 56 38-99 250-305 (506)
13 COG5118 BDP1 Transcription ini 91.6 0.21 4.5E-06 57.9 4.6 41 43-83 367-407 (507)
14 KOG4468 Polycomb-group transcr 88.6 0.39 8.5E-06 58.3 3.7 44 40-83 85-140 (782)
15 KOG4329 DNA-binding protein [G 88.5 1.6 3.5E-05 50.9 8.3 45 42-86 278-323 (445)
16 KOG0457 Histone acetyltransfer 87.9 0.85 1.9E-05 53.8 5.8 53 38-92 69-122 (438)
17 PLN03212 Transcription repress 85.0 1.3 2.7E-05 49.4 5.0 42 42-83 26-69 (249)
18 KOG0048 Transcription factor, 83.4 1.5 3.3E-05 47.5 4.8 44 42-85 63-106 (238)
19 PLN03091 hypothetical protein; 81.4 1.9 4.1E-05 51.3 4.8 41 43-83 16-58 (459)
20 KOG1194 Predicted DNA-binding 79.7 2.5 5.3E-05 50.5 5.0 45 40-84 186-230 (534)
21 KOG4167 Predicted DNA-binding 73.6 8.5 0.00018 48.5 7.3 87 43-145 621-714 (907)
22 KOG1583 UDP-N-acetylglucosamin 68.0 3.1 6.6E-05 47.5 2.0 40 55-117 186-228 (330)
23 KOG3554 Histone deacetylase co 62.6 7.8 0.00017 46.6 3.9 45 43-87 287-332 (693)
24 PF07039 DUF1325: SGF29 tudor- 61.1 11 0.00024 38.3 4.2 45 719-763 77-126 (130)
25 COG5114 Histone acetyltransfer 52.9 20 0.00042 41.8 4.9 45 39-83 61-106 (432)
26 PF13837 Myb_DNA-bind_4: Myb/S 52.5 21 0.00047 32.3 4.3 52 42-93 2-72 (90)
27 smart00333 TUDOR Tudor domain. 49.7 26 0.00057 29.4 4.1 46 719-766 8-54 (57)
28 PLN03142 Probable chromatin-re 49.4 23 0.00049 46.6 5.3 50 33-82 816-866 (1033)
29 PF09465 LBR_tudor: Lamin-B re 48.3 26 0.00056 31.6 3.9 32 719-750 11-44 (55)
30 KOG0049 Transcription factor, 48.1 13 0.00029 46.4 2.8 36 42-77 413-449 (939)
31 cd08782 Death_DAPK1 Death doma 43.8 11 0.00024 35.6 1.1 38 33-85 3-40 (82)
32 PF15057 DUF4537: Domain of un 41.7 35 0.00076 34.3 4.2 48 719-768 3-51 (124)
33 KOG0049 Transcription factor, 40.3 33 0.00072 43.1 4.5 42 43-84 362-404 (939)
34 PF13873 Myb_DNA-bind_5: Myb/S 39.1 68 0.0015 28.8 5.3 46 41-86 2-69 (78)
35 cd08780 Death_TRADD Death Doma 35.7 42 0.00091 33.0 3.5 56 45-103 1-73 (90)
36 KOG2009 Transcription initiati 35.4 23 0.00049 44.0 2.1 57 33-93 405-463 (584)
37 cd04508 TUDOR Tudor domains ar 34.2 61 0.0013 26.4 3.8 31 719-749 3-34 (48)
38 PF05489 Phage_tail_X: Phage T 30.6 61 0.0013 29.2 3.5 34 58-91 6-39 (60)
39 KOG4485 Uncharacterized conser 28.7 1E+02 0.0022 37.9 5.7 78 679-758 259-360 (724)
40 KOG2656 DNA methyltransferase 28.1 22 0.00047 42.3 0.4 51 41-91 130-187 (445)
41 KOG0048 Transcription factor, 28.0 56 0.0012 35.8 3.4 47 42-88 10-80 (238)
42 cd08318 Death_NMPP84 Death dom 27.6 59 0.0013 30.7 3.0 55 51-105 9-73 (86)
43 KOG0051 RNA polymerase I termi 24.7 71 0.0015 40.1 3.8 42 33-74 376-417 (607)
44 KOG0888 Nucleoside diphosphate 23.1 1.3E+02 0.0028 32.1 4.8 71 42-118 42-127 (156)
45 PF10591 SPARC_Ca_bdg: Secrete 22.2 29 0.00062 34.3 -0.1 29 678-706 67-95 (113)
46 smart00005 DEATH DEATH domain, 21.8 72 0.0016 29.0 2.4 57 49-106 5-74 (88)
47 cd08306 Death_FADD Fas-associa 21.5 74 0.0016 30.1 2.5 54 51-104 3-68 (86)
48 KOG4282 Transcription factor G 20.7 1.7E+02 0.0037 33.5 5.6 44 41-84 54-111 (345)
49 smart00743 Agenet Tudor-like d 20.7 1.9E+02 0.0041 25.0 4.6 48 719-766 8-57 (61)
No 1
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-93 Score=824.36 Aligned_cols=800 Identities=39% Similarity=0.455 Sum_probs=695.8
Q ss_pred CCCCC--CcccccccccccCCCCCCCCCCchhhh-hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhc-ccHH
Q 044351 1 MAPTR--KSRSVNKRYANEVSPAKDVISPSKSKQ-KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRN-RSAE 76 (1172)
Q Consensus 1 Map~R--ksRsvnKr~~ne~s~~kd~~~~~k~k~-KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~-Rs~~ 76 (1172)
|||.| |++.+||+|+|+++|+++....+|.+| |||++|+|||||++.|+++||++|++||+.|+++++.++. |+.+
T Consensus 1 ~a~vRkrk~~~~~~~~~ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~k~~~k~~~~~r~~~~~~~~~R~s~ 80 (837)
T KOG1019|consen 1 MAAVRKRKSKSVDKRFTNDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFYKAYRKRGREWRKSPAAVRSTRSSN 80 (837)
T ss_pred CCcccccccccccccccccccccccccccccCCCCCcccccccCcchhHhhhhhhhhcccccccccccccccccchhhhh
Confidence 89999 899999999999999999999999999 9999999999999999999999999999999999999995 9999
Q ss_pred HHHHHHHhcccccccCcccchhhhHHHhhccccccccCCCcccccCCCCCCcchhhhhhhhhh-cccCcccccccccccc
Q 044351 77 MVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGSDSERESNDASEMPRKSQKRKRAKV-QLSASKEDISQSWSMA 155 (1172)
Q Consensus 77 mV~aly~~~r~ylslpeg~as~~g~~a~mtdhy~~~~~s~se~es~~~~~~~~k~~kr~r~~~-~~~~~~~~~~~~~~~~ 155 (1172)
||++||.||+||+|+|+|++++.|+|+||||||.++.||.+++|++|+++..++..|++|+++ ..++..+.+.-.+.+.
T Consensus 81 ~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~va~~~D~~eg~~l~n~~~ 160 (837)
T KOG1019|consen 81 MVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKVAKRSDFDEGLRLTNEAK 160 (837)
T ss_pred HHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhcccccccccccccchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8888888888888889
Q ss_pred ccCCccccccccccCCCCcccccccCCccccccccccCCcccCCCCccccccccccCCchhHHHHHHHHHHHHhhcCCCC
Q 044351 156 ATGGCLSLLKRSRIDGNQPRAVKKRTPRFPVSYSQKKDDRDDYIPLNKKDRRSAVDANDDEVAHVAALALTEASQRGGSP 235 (1172)
Q Consensus 156 S~~G~ls~lKk~~~~~~~p~aVGKRTPRvPV~~~~~kd~~e~~~~~~k~~~k~~~da~DDd~ah~~ALALteasqRGgSp 235 (1172)
+..||+++||+.++ -++.++++|++++-..+..+|...+.+|+.|..++. +.++ +++.||+.
T Consensus 161 s~~~~~~~~~q~~~----~~~~k~~~~~~~~~~~~~aed~~~~s~~n~r~~~ql-~r~~------------~ksRr~~~- 222 (837)
T KOG1019|consen 161 SLSGHLWFFKQFRT----SQADKPTLKQFLVYKNQTAEDAPTLSRPNIRALWQL-DRRD------------GKSRRGSA- 222 (837)
T ss_pred cccchHHHHHHHHh----hhhccccchhhhHHHhhhhhhhhhccchhhhhhhhh-hccc------------ccchhccc-
Confidence 99999999999997 478999999999999999999999999999999988 4444 67888887
Q ss_pred CccCCCccccccCCCCccccccccCCCCCCCCCcccccccccCCCcccccCCCCCCCccccchhccccccccccchhhcc
Q 044351 236 QVSQSPHKKTEHGKSSPVQIWDKMFPPAETAHPDAREALNEEGCPEARILNRRPENGAYTRARKSLMDMEGVGTVEVHRK 315 (1172)
Q Consensus 236 qvS~tP~rr~e~~~~Sp~q~~dkm~~~se~~~~k~~~s~~de~~~E~Sl~Sr~a~~g~y~rd~s~lm~~eG~g~~~~~~K 315 (1172)
|.++.+..+..|-+.++++.+..+-.+.+ ++++|.+.| ..+....-|.-+++++.||+|++.|.++.
T Consensus 223 -----~~f~~e~~E~~~~~~~~~~~~sr~~~~~~-~nss~~~~~----~~~i~~~l~~~~~~Ss~L~~~er~~~~~~--- 289 (837)
T KOG1019|consen 223 -----PFFREELSEQIPKRERIKTSQSREKFSKL-KNSSMLRIG----PRSIPKPLGKPDRVSSLLMDMERMGLEEA--- 289 (837)
T ss_pred -----hhhHhHHhhhhHHHHhhhhhhhhcccCCC-CchHHhhhh----hhhcccccccCccchhhhhchhhcccccc---
Confidence 89999888999999999998877766655 999999999 56677788999999999999999987654
Q ss_pred cccccccchhHHhhhcCCCccccccccccccCcccccCCcccccccccCCCCchhhhhhhcccccCCCcchhhHHHHHHH
Q 044351 316 GKKFYRKKMKVEEVRNSLSDDEGEACSGTEEGLSSRKGKVGSEISNAKNDHLPLQMQRKRSKKLFFGDESTALNALQTLA 395 (1172)
Q Consensus 316 ~k~~~~rk~kve~~~~~q~dD~~EAcSgteEg~s~~~~k~~~ev~~~k~~~~s~k~~~kRskklf~gde~salDAL~TLA 395 (1172)
|.++++.+.+++++| +|||++++|
T Consensus 290 ------kv~~~e~ae~sy~~d--------------------------------------------------~~~~~~~~a 313 (837)
T KOG1019|consen 290 ------KVVKDELAEGSYLDD--------------------------------------------------GLDALKLPA 313 (837)
T ss_pred ------eeEeechhhhhhhhh--------------------------------------------------hhhhhccch
Confidence 224566666666655 499999999
Q ss_pred Hhh-ccCCCCcccccchhhhhhhccccccCCCCCCCCcCCCCCchhhhcccCcchhhcccccccccccccccccCcccCC
Q 044351 396 DLS-LMLPDSTMESESSVQLKEERTAFDIDDKSSAPEETSTSHPKEKIKHLGPKEKALNTITEAEDIIPRKSKLGRYSGN 474 (1172)
Q Consensus 396 dlS-l~~P~~~~esess~q~kee~~~~~~d~k~~~p~~~s~~h~kek~k~~~~k~~~~~~~~~~~~~~~kksk~~k~~~~ 474 (1172)
.++ +|+|...++||++.++++|+.+..+|.+++.++.+.++++..+..-...++...+.+...+ +++.|+.+.-..
T Consensus 314 e~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~~~~~~~nv~~~ke~L~~~l~a~~---~~k~k~~k~~s~ 390 (837)
T KOG1019|consen 314 EESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETSPHIPKNNVSDTKELLDGKLRALS---KRKIKPSKPLST 390 (837)
T ss_pred hhcccccccccchhhcccccccccccceeccCcCCceeeccCcCCccccchhhhhhhhhhhhhhh---hhcccccccccC
Confidence 999 9999999999999999999999999999999999999999988877777888888776664 567777777777
Q ss_pred CcchhhhhccCCCCCCchhhcccccccccccccccccccccccccchhhhHhhhh-ccccccCcccccccccccccCCcc
Q 044351 475 DVETVAEVKEQPEPPNSMSKRKRKSVLSKKISNSEAVTDTHMTRTLESEAVAEEH-NKFASKGKRTSQNSAQSKQWKPGR 553 (1172)
Q Consensus 475 d~~~~~e~k~~~~~~~~~~krkrk~~~~~k~~~~e~~~~~~~~~~~~~~e~~~~~-~k~~~kgk~~~~~~~~~kq~k~~~ 553 (1172)
|...++.....+. +++++++ +.++++++ |.. +.++...++.+... .+..++|++..+..+. +|.++++
T Consensus 391 d~~~v~~~il~~l----s~~~~~~-v~D~et~~-ei~----q~~S~~~~~~~~~~e~~s~v~~~r~~~~~a~-~q~~t~~ 459 (837)
T KOG1019|consen 391 DGVRVSVAILMDL----SRKRKLL-VLDVETPK-EIS----QSKSRNRGESTERLEKKSLVKGRRYSAVPAN-LQRLTKK 459 (837)
T ss_pred CCccchhHHhhhh----cccCccc-cccccchh-hhh----cccccccccchhhhhhhhhhhhhhhhhhhHH-HHHhhhh
Confidence 7777777777754 3455555 77777763 322 22334444433333 5679999999999998 9999999
Q ss_pred cccCC-ccccccccccccCCCCCCCCCCCCCCCCcccccccchhhccccchhhccccccccCCCCCCCCCchhHHHHHHH
Q 044351 554 VLEGS-SVNDQNRASIDLVAPTGQAPVASPASSPTKHQSRRKMDLKRKLSSKEMKFSENSLKTQPNKNSLSQEDRLLSMK 632 (1172)
Q Consensus 554 ~~e~s-~~~d~~~~~~~~~~p~~q~~~~~q~~lp~K~rSrRK~~~~k~l~~k~~~s~~~~~~~~~~~~~~s~~~~~~~~~ 632 (1172)
..+.+ +..|......|.+++..|+...+...++.|.+.+|++.+++++..+.+ +.|..+....+.+.+|..... ++
T Consensus 460 i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~-~~e~~h~~~~s~n~~Sq~~l~--~~ 536 (837)
T KOG1019|consen 460 IGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKAL-SGEQDHHMYFSRNDLSQSELL--PK 536 (837)
T ss_pred ccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHh-hcccchhhhccccchhHHHhc--ch
Confidence 99997 899999999999999999999999999999999999999999998875 456666666667777777665 78
Q ss_pred HHHHhhccccccccceeeecccccCChhhhccchHHHHHHhcCCCCCCccchhhHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 044351 633 EKLSGCLSSNMVRRWCTFEWFYSAIDYPWFSNREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFLHDEREKL 712 (1172)
Q Consensus 633 ~rL~n~Lk~pkarRW~~~EwFYS~IDkp~F~~nEF~~~L~~~~l~~~~~LtR~EW~~IRr~mGKPRRfS~aFl~EER~kL 712 (1172)
.++.+|+..+...+||++||||+++|.+||..-+|..||.++++++++++++++|.+|-..+|.|| |..|..+||+.|
T Consensus 537 ~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~lqepr--s~~~~~~er~~l 614 (837)
T KOG1019|consen 537 AKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSSLQEPR--STRILQEEREKL 614 (837)
T ss_pred hHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHHhhcch--hhhhhhhHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhHhcc------------------------eEEEEcCCCCCccCceEEEEeCCceEEEecCCCCCeeeeccCcccCCCCC
Q 044351 713 KQYRES------------------------RVIAIHPKTRELHDGSVLTIDHDKCRVQFDRPELGVEFVMDIDSMPSNPL 768 (1172)
Q Consensus 713 E~~R~~------------------------kViA~hp~~r~L~dG~Vlavd~~~YrV~FDrpeLGv~~VpD~dvmp~~p~ 768 (1172)
+.|++. -|=|.||.++++|||.|+++|++.|-|-|+ .||++.|||++|||++|+
T Consensus 615 q~yvE~~~k~~~~l~s~~~~~~~t~~~r~~d~~~s~p~t~e~~d~~~~~~~~n~~~~~~~--~~~a~~~~~q~~~~ln~~ 692 (837)
T KOG1019|consen 615 QDYVESVRKTYHELRSEAGELLGTDLARKLDVGASHPKTREIHDGKILTVDHNKCNVLFD--KLGAELVMDQDCMPLNPL 692 (837)
T ss_pred HHHHHhhhcchhhhhccccccccchhccccccccCCcchhhhhhhhhhhcccccCccchh--hhcccccchhhccccChh
Confidence 999998 455789999999999999999999999999 899999999999999999
Q ss_pred CCchHHHHHhhhhhhhhhhhhhhhhCCCCCCCCCccccCCCCCCCCCCCchhhhhhccccccccchhhhhhhhhHHHHHh
Q 044351 769 DNMPEALRRQISADKFSAISKELQVNGHPNFGSPMLFASDGHLEKAPILPNTLQKQAKGDMNHALPQAKSLATDIVSAQQ 848 (1172)
Q Consensus 769 e~~P~sl~~~~~~~kf~~~~~el~~nG~~~~~~~~l~sp~~~~~~~~~ls~~l~~qak~~~~e~~~~a~~~~~~av~~qq 848 (1172)
+.+|+.+++++ .++..+..|++++||.+.
T Consensus 693 ~dk~e~~~r~~--d~~~~~~~e~q~~g~~na------------------------------------------------- 721 (837)
T KOG1019|consen 693 EDKPEGLRRQI--DKCLEKEKEAQLGGHENA------------------------------------------------- 721 (837)
T ss_pred hhhhhhhhhhh--hHHHHHHHHHHhCCCCCc-------------------------------------------------
Confidence 99999999998 777787777777775443
Q ss_pred hhhcCccchhhHHHHHHHHHhhcHHHHHHHHHhhchHHHhhccCCCCccCCChHHHHHHHHHHHHHHHhhhhhccccchh
Q 044351 849 AAYGQLCTVPQIQAREATVRALSEEALLMELKNTNNDILESQNGGESSLKDSEPLKKHIATVLVQLKEANDQACGFRELC 928 (1172)
Q Consensus 849 ~~~~qP~~~~q~Q~keadI~aLsEeall~ELr~MNdEae~~~~~g~~~~k~se~Fqk~YA~VvlqL~e~N~~~~~~~~~~ 928 (1172)
+.+++-|+..|+.|.+|+.+.
T Consensus 722 ------------------------------------------------~~~s~~~~~~~~~v~fq~~~~----------- 742 (837)
T KOG1019|consen 722 ------------------------------------------------GYSSLFRPDELENVEFQMNQQ----------- 742 (837)
T ss_pred ------------------------------------------------CchhhcCchhHHHHHHHHHhc-----------
Confidence 223455677888899998853
Q ss_pred cccccccccccccccccccccchhhhhHHHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCcCccCCCCeeeeeeccch
Q 044351 929 FGISCYLSLQFHTLTWRRSLIDCFDMQASSALLQVRQCNTHPESSRPSWPMHPANVKMLDNSHVSQESGSAVAEIVNGSR 1008 (1172)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~qvs~al~~lRqrnty~~n~~~~~~~~~~~~~~~~~~~~~~e~gs~v~eiv~~Sr 1008 (1172)
+.|++-+|.-++||||--.+ ..-.--+..-.+..|....+|++.+|+|||.+|+
T Consensus 743 ------------------------~d~~~~~L~g~~q~~~~~~~--~~~~~E~~~~l~~qh~~~~~~~~~~~~eiv~~s~ 796 (837)
T KOG1019|consen 743 ------------------------LDPEEPHLDGKVQHNTIEIQ--KLKLEEIQRELALQHLDDEEEMEPEMVEIVTQSK 796 (837)
T ss_pred ------------------------cCchhhhhhhhhhccchHhh--hccccchhhHHHhhcCChhhhcCcchhhhhhhhH
Confidence 44599999999999992222 1111111122234489999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccccchhHHHHHHHHhhcccccC
Q 044351 1009 LKAHTMVDAAVKAMSSVKEGEDAYTKIGEALDHIDKRQL 1047 (1172)
Q Consensus 1009 ~kA~~MVdaA~qA~s~~kege~~~~~i~~ald~i~~~~~ 1047 (1172)
.+|++|||+||||+++++|+|+....|+|||+ ++|+
T Consensus 797 i~a~kmvd~a~qaa~~~~~de~~~~~meea~~---~~~~ 832 (837)
T KOG1019|consen 797 IEAQKMVDAAIQAASSTKEDEDVNLMMEEALE---EEQV 832 (837)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHh---hhcc
Confidence 99999999999999999999999999999997 5544
No 2
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=99.94 E-value=1.1e-27 Score=228.06 Aligned_cols=66 Identities=52% Similarity=0.838 Sum_probs=64.4
Q ss_pred ccccCChhhhccchHHHHH-HhcCCCCCCccchhhHHHHHhhcCCCCCCCHHHHHHHHHHHHhHhcc
Q 044351 653 FYSAIDYPWFSNREFVEYL-NHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFLHDEREKLKQYRES 718 (1172)
Q Consensus 653 FYS~IDkp~F~~nEF~~~L-~~~~l~~~~~LtR~EW~~IRr~mGKPRRfS~aFl~EER~kLE~~R~~ 718 (1172)
|||+||+|||..|||++|| +++|++++++|||+||+.||++||||||||++||+|||++||+||++
T Consensus 1 FYS~iDk~~f~~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF~~eER~~Le~~R~~ 67 (109)
T PF06584_consen 1 FYSFIDKPLFEDNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAFLEEEREELERKRQK 67 (109)
T ss_pred CCccccHHHHhhhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55899999999999999999999999999999999999999999998
No 3
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-28 Score=287.12 Aligned_cols=659 Identities=15% Similarity=0.047 Sum_probs=454.2
Q ss_pred cccccccCCccccccccccCCcccCCCCccccccccccCCchhHHHHHHHHHHHHhhcCCCCCccCCCccccccCCCCcc
Q 044351 174 PRAVKKRTPRFPVSYSQKKDDRDDYIPLNKKDRRSAVDANDDEVAHVAALALTEASQRGGSPQVSQSPHKKTEHGKSSPV 253 (1172)
Q Consensus 174 p~aVGKRTPRvPV~~~~~kd~~e~~~~~~k~~~k~~~da~DDd~ah~~ALALteasqRGgSpqvS~tP~rr~e~~~~Sp~ 253 (1172)
|.|||| |||.+|.+.+.+|+...|-.+..+..++-.+..+|...|..+++++++.+ +.+..+.|..+ ++.|+
T Consensus 1 ~a~vRk-rk~~~~~~~~~ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~-----k~~~k~~~~~r--~~~~~ 72 (837)
T KOG1019|consen 1 MAAVRK-RKSKSVDKRFTNDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFY-----KAYRKRGREWR--KSPAA 72 (837)
T ss_pred CCcccc-cccccccccccccccccccccccccCCCCCcccccccCcchhHhhhhhhh-----hcccccccccc--ccccc
Confidence 579999 99999999999999999999999999999899999999999999999988 77888888666 67888
Q ss_pred ccccccCCCCCCCCCcccccccccCCCcccccCCCCCCCccccchhccccccccccchhhcccccccccchhHHhhhcCC
Q 044351 254 QIWDKMFPPAETAHPDAREALNEEGCPEARILNRRPENGAYTRARKSLMDMEGVGTVEVHRKGKKFYRKKMKVEEVRNSL 333 (1172)
Q Consensus 254 q~~dkm~~~se~~~~k~~~s~~de~~~E~Sl~Sr~a~~g~y~rd~s~lm~~eG~g~~~~~~K~k~~~~rk~kve~~~~~q 333 (1172)
....++..+.+...++.+...+-...+|..+|+.+..+++|.--.-+.=..||...++..+|..++++.++ . +
T Consensus 73 ~~~~R~s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~v------a-~ 145 (837)
T KOG1019|consen 73 VRSTRSSNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKV------A-K 145 (837)
T ss_pred ccchhhhhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhcc------c-c
Confidence 88889999999999999999999999999999999999999988777767777777899999999888775 2 7
Q ss_pred CccccccccccccCcccccCCccccccc-ccCCCCchhhhhhhcccccCCCcchhhHHHHHHHHhhccCCCCcccccchh
Q 044351 334 SDDEGEACSGTEEGLSSRKGKVGSEISN-AKNDHLPLQMQRKRSKKLFFGDESTALNALQTLADLSLMLPDSTMESESSV 412 (1172)
Q Consensus 334 ~dD~~EAcSgteEg~s~~~~k~~~ev~~-~k~~~~s~k~~~kRskklf~gde~salDAL~TLAdlSl~~P~~~~esess~ 412 (1172)
.+|..|+|++|.|..+++.-+..+.... ... -+.+.++..+--+..+.||+.+++++..+++..+...++|.
T Consensus 146 ~~D~~eg~~l~n~~~s~~~~~~~~~q~~~~~~-------~k~~~~~~~~~~~~~aed~~~~s~~n~r~~~ql~r~~~ksR 218 (837)
T KOG1019|consen 146 RSDFDEGLRLTNEAKSLSGHLWFFKQFRTSQA-------DKPTLKQFLVYKNQTAEDAPTLSRPNIRALWQLDRRDGKSR 218 (837)
T ss_pred cccccccccchhhhccccchHHHHHHHHhhhh-------ccccchhhhHHHhhhhhhhhhccchhhhhhhhhhcccccch
Confidence 7899999999999999998776665521 111 13333343334478899999999999999999999999999
Q ss_pred hhhhhccccccCCCC------CCCCcCCCCCchhhhcccCcchhhcccccccccccccccccCcccCCCcchhhhhccCC
Q 044351 413 QLKEERTAFDIDDKS------SAPEETSTSHPKEKIKHLGPKEKALNTITEAEDIIPRKSKLGRYSGNDVETVAEVKEQP 486 (1172)
Q Consensus 413 q~kee~~~~~~d~k~------~~p~~~s~~h~kek~k~~~~k~~~~~~~~~~~~~~~kksk~~k~~~~d~~~~~e~k~~~ 486 (1172)
|+..+.+-...++-. .++-.-.-...++..+-+ .- +.+.+..+.-+..+
T Consensus 219 r~~~~~f~~e~~E~~~~~~~~~~~~sr~~~~~~~nss~~-------~~--~~~~i~~~l~~~~~---------------- 273 (837)
T KOG1019|consen 219 RGSAPFFREELSEQIPKRERIKTSQSREKFSKLKNSSML-------RI--GPRSIPKPLGKPDR---------------- 273 (837)
T ss_pred hccchhhHhHHhhhhHHHHhhhhhhhhcccCCCCchHHh-------hh--hhhhcccccccCcc----------------
Confidence 987744433222111 111110000000000000 00 01111111111111
Q ss_pred CCCCchhhcccccccccccccccccccccccccchhhhHhhhhccccccCcc-cccccccccccCCcccccCCccccccc
Q 044351 487 EPPNSMSKRKRKSVLSKKISNSEAVTDTHMTRTLESEAVAEEHNKFASKGKR-TSQNSAQSKQWKPGRVLEGSSVNDQNR 565 (1172)
Q Consensus 487 ~~~~~~~krkrk~~~~~k~~~~e~~~~~~~~~~~~~~e~~~~~~k~~~kgk~-~~~~~~~~kq~k~~~~~e~s~~~d~~~ 565 (1172)
|++--+.+.+-+ ..+.++.+.|.--.+-....|--...-+++-.++.-|.+ .+...++-+...+...-...+++ +..
T Consensus 274 ~Ss~L~~~er~~-~~~~kv~~~e~ae~sy~~d~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~-~~i 351 (837)
T KOG1019|consen 274 VSSLLMDMERMG-LEEAKVVKDELAEGSYLDDGLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSG-FEI 351 (837)
T ss_pred chhhhhchhhcc-cccceeEeechhhhhhhhhhhhhhccchhhcccccccccchhhcccccccccccceeccCcCC-cee
Confidence 111111122211 222222222210000000111112233445555555544 23333333332233222222111 112
Q ss_pred cccccCCCCCCCCCCCCCCCCccccccc--chhhccccchhhccccccccCCCCCCCCCchhHHHHHHHHHHHhhccccc
Q 044351 566 ASIDLVAPTGQAPVASPASSPTKHQSRR--KMDLKRKLSSKEMKFSENSLKTQPNKNSLSQEDRLLSMKEKLSGCLSSNM 643 (1172)
Q Consensus 566 ~~~~~~~p~~q~~~~~q~~lp~K~rSrR--K~~~~k~l~~k~~~s~~~~~~~~~~~~~~s~~~~~~~~~~rL~n~Lk~pk 643 (1172)
.+.+..+|++ .....+++|++|.++.+ |+...+++.+..++-+..++-..+-...+=+.|.+ .-..+.++++...
T Consensus 352 v~~~~~~~~~-nv~~~ke~L~~~l~a~~~~k~k~~k~~s~d~~~v~~~il~~ls~~~~~~v~D~e--t~~ei~q~~S~~~ 428 (837)
T KOG1019|consen 352 VETSPHIPKN-NVSDTKELLDGKLRALSKRKIKPSKPLSTDGVRVSVAILMDLSRKRKLLVLDVE--TPKEISQSKSRNR 428 (837)
T ss_pred eccCcCCccc-cchhhhhhhhhhhhhhhhhcccccccccCCCccchhHHhhhhcccCcccccccc--chhhhhccccccc
Confidence 3334444444 33446889999999988 88888999988776666655555534445567776 5679999999999
Q ss_pred cccceeeecccccCChhhhccchHHHHHHhcCCCCCCccchhhHHHHHhhcCCCCCCCHHHHHHHHHHHHhHhcc-----
Q 044351 644 VRRWCTFEWFYSAIDYPWFSNREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRLSKRFLHDEREKLKQYRES----- 718 (1172)
Q Consensus 644 arRW~~~EwFYS~IDkp~F~~nEF~~~L~~~~l~~~~~LtR~EW~~IRr~mGKPRRfS~aFl~EER~kLE~~R~~----- 718 (1172)
+..|+..| |||.++++||..-.|..++-+.++++...|+|..|..++...++||++|..|..++++++--+|.+
T Consensus 429 ~~~~~~~e-~~s~v~~~r~~~~~a~~q~~t~~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a 507 (837)
T KOG1019|consen 429 GESTERLE-KKSLVKGRRYSAVPANLQRLTKKIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNA 507 (837)
T ss_pred ccchhhhh-hhhhhhhhhhhhhhHHHHHhhhhccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhH
Confidence 99999999 999999999999999988888899999999999999999999999999999999999999999988
Q ss_pred -----------------------eEEEEcCCCCCccCceEEEEeCCceEEEecCCCCCeeeeccCcccCCCCCCCchHHH
Q 044351 719 -----------------------RVIAIHPKTRELHDGSVLTIDHDKCRVQFDRPELGVEFVMDIDSMPSNPLDNMPEAL 775 (1172)
Q Consensus 719 -----------------------kViA~hp~~r~L~dG~Vlavd~~~YrV~FDrpeLGv~~VpD~dvmp~~p~e~~P~sl 775 (1172)
.+|-.++.....+++-+.+||+..|++.|+.|.+|+.++-++|||+..++..+|..+
T Consensus 508 ~~e~~~~~e~~h~~~~s~n~~Sq~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s 587 (837)
T KOG1019|consen 508 LQEKALSGEQDHHMYFSRNDLSQSELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLS 587 (837)
T ss_pred HHHHHhhcccchhhhccccchhHHHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchh
Confidence 334445556688899999999999999999999999999999999999999999998
Q ss_pred HHhhh-hhhhhhhhh-h-------hhhCCCCCCC---CCccccCCCCCCCCCCCchhhhhhccccccccchhhhhhhhhH
Q 044351 776 RRQIS-ADKFSAISK-E-------LQVNGHPNFG---SPMLFASDGHLEKAPILPNTLQKQAKGDMNHALPQAKSLATDI 843 (1172)
Q Consensus 776 ~~~~~-~~kf~~~~~-e-------l~~nG~~~~~---~~~l~sp~~~~~~~~~ls~~l~~qak~~~~e~~~~a~~~~~~a 843 (1172)
.++.. ..-....++ . -.++++.-.- .-++-++.+.+ . ....++++++.-+.+.++-.--.+
T Consensus 588 ~V~~~vl~~~lqeprs~~~~~~er~~lq~yvE~~~k~~~~l~s~~~~~------~-~t~~~r~~d~~~s~p~t~e~~d~~ 660 (837)
T KOG1019|consen 588 AVEWSVLKSSLQEPRSTRILQEEREKLQDYVESVRKTYHELRSEAGEL------L-GTDLARKLDVGASHPKTREIHDGK 660 (837)
T ss_pred hhhHHHHHHHhhcchhhhhhhhHHHHHHHHHHhhhcchhhhhcccccc------c-cchhccccccccCCcchhhhhhhh
Confidence 87731 110000000 0 0111111000 00122222111 1 234467777776665433221111
Q ss_pred HHHHhhhhcCccchhhHHHHHHHHHhhcH--------HHHHHHHHhhchHHHhhccCC
Q 044351 844 VSAQQAAYGQLCTVPQIQAREATVRALSE--------EALLMELKNTNNDILESQNGG 893 (1172)
Q Consensus 844 v~~qq~~~~qP~~~~q~Q~keadI~aLsE--------eall~ELr~MNdEae~~~~~g 893 (1172)
. .-+.-+.+|..+.++|+++++.+++.+ |-+..+|..||++..+.+.+|
T Consensus 661 ~-~~~~~n~~~~~~~~~~a~~~~~q~~~~ln~~~dk~e~~~r~~d~~~~~~~e~q~~g 717 (837)
T KOG1019|consen 661 I-LTVDHNKCNVLFDKLGAELVMDQDCMPLNPLEDKPEGLRRQIDKCLEKEKEAQLGG 717 (837)
T ss_pred h-hhcccccCccchhhhcccccchhhccccChhhhhhhhhhhhhhHHHHHHHHHHhCC
Confidence 1 115678899999999999999998877 888999999999999999888
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.22 E-value=2.4e-06 Score=70.30 Aligned_cols=43 Identities=35% Similarity=0.716 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhCcC-HHHHHHHHh-cccHHHHHHHHHhc
Q 044351 43 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVEALYNMN 85 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gkd-Wkkva~~v~-~Rs~~mV~aly~~~ 85 (1172)
.||.+|.+.|.+|+++||.+ |++||..|+ +||..+++.=|...
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999998 999999999 99999999888654
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.95 E-value=1.9e-05 Score=61.96 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 41 GPQWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
+..||.+|.+.|+.++..|| .+|+.||..+++||..+++.-|..
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~ 45 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN 45 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 35799999999999999999 899999999999999999988865
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.91 E-value=2.1e-05 Score=61.04 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
.||.+|.+.|+.+++.|| .+|++||..+++||..+|+.-|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHH
Confidence 499999999999999999 899999999999999999988764
No 7
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.63 E-value=8.3e-05 Score=64.94 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CH---HHHHHHHh-cc-cHHHHHHHHHhcc
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DW---KKVAAQVR-NR-SAEMVEALYNMNR 86 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dW---kkva~~v~-~R-s~~mV~aly~~~r 86 (1172)
-.||.||+++|.+|+..||. +| ++|+..+. +| |..+|++-+-+.+
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 46999999999999999999 99 99999876 67 9999999876654
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.34 E-value=0.00033 Score=59.57 Aligned_cols=41 Identities=32% Similarity=0.672 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 44 WSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 44 WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
||++|-+...++|..||.+|++||..+++||..+|+.=|..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999988999999988876
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.78 E-value=0.011 Score=64.81 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~ 83 (1172)
..||+||-+.-++++..||..|.+||..|..||..+|+.-|+
T Consensus 79 gpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWn 120 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 120 (249)
T ss_pred CCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999998886
No 10
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.80 E-value=0.025 Score=66.53 Aligned_cols=47 Identities=36% Similarity=0.656 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCc
Q 044351 41 GPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPE 93 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpe 93 (1172)
.--||..|+...+|+...||-||.|||.+|++||+|+--- -||.||-
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl------~FL~LPi 325 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCIL------HFLQLPI 325 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHH------HHHcCCc
Confidence 4489999999999999999999999999999999998632 4899996
No 11
>PLN03091 hypothetical protein; Provisional
Probab=94.21 E-value=0.059 Score=63.32 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||+||-+..+++|+.||..|.+||..|..||..+|+--|+.
T Consensus 68 gpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWns 110 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHH
Confidence 3799999999999999999999999999999999999988863
No 12
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=92.48 E-value=0.12 Score=62.05 Aligned_cols=56 Identities=32% Similarity=0.575 Sum_probs=48.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCcccchhh
Q 044351 38 DKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTASVV 99 (1172)
Q Consensus 38 D~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as~~ 99 (1172)
.-.++-||..|+-.-+|+...||-||.+|+.+|.+||.++.=- -||.||=+.+-..
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~------kFL~LPieD~~l~ 305 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCIL------KFLRLPIEDPYLA 305 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHH------HHHhcCccchhhh
Confidence 3578999999999999999999999999999999999998643 4899998765443
No 13
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.56 E-value=0.21 Score=57.89 Aligned_cols=41 Identities=29% Similarity=0.662 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHH
Q 044351 43 QWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~ 83 (1172)
+|+++|++.||.|+-.+|-|+--|+.-.++|...||.|=|-
T Consensus 367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi 407 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFI 407 (507)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHH
Confidence 89999999999999999999999999999999999999874
No 14
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=88.57 E-value=0.39 Score=58.29 Aligned_cols=44 Identities=30% Similarity=0.634 Sum_probs=37.9
Q ss_pred cCC--CCCHHHHHHHHHHHHHhCcCHHHH----------HHHHhcccHHHHHHHHH
Q 044351 40 LGP--QWSKGELQRFYEAYRNYGKDWKKV----------AAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 40 lgp--~WSkeEl~~Fyea~r~~GkdWkkv----------a~~v~~Rs~~mV~aly~ 83 (1172)
++. -|+-.|-+-||+|+|.||||+++| -..++-.|.++|++-|.
T Consensus 85 t~~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY 140 (782)
T KOG4468|consen 85 TWAKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYY 140 (782)
T ss_pred cccccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHH
Confidence 555 899999999999999999999999 44455678999998775
No 15
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=88.49 E-value=1.6 Score=50.92 Aligned_cols=45 Identities=33% Similarity=0.578 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHH-HHHHhcccHHHHHHHHHhcc
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKV-AAQVRNRSAEMVEALYNMNR 86 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkv-a~~v~~Rs~~mV~aly~~~r 86 (1172)
.-||.+|-..|=+.++.||||+-.| +..|++||+...-+.|.|-|
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence 3599999999999999999999998 56899999999999998865
No 16
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=87.85 E-value=0.85 Score=53.85 Aligned_cols=53 Identities=25% Similarity=0.548 Sum_probs=46.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHhcccccccC
Q 044351 38 DKLGPQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNMNRAYLSLP 92 (1172)
Q Consensus 38 D~lgp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~~r~ylslp 92 (1172)
-.+.|-|+-+|=-.|++|...||= +|.-||.+|++||.+.++.=|.. .|+-=|
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k--~fv~s~ 122 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLK--HFVNSP 122 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHH--HHhcCc
Confidence 357899999999999999999998 99999999999999999998864 354433
No 17
>PLN03212 Transcription repressor MYB5; Provisional
Probab=84.99 E-value=1.3 Score=49.41 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHh-cccHHHHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVR-NRSAEMVEALYN 83 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~-~Rs~~mV~aly~ 83 (1172)
..||+||=+.-.++..+||. +|+.||..+. +||..+.+.=|.
T Consensus 26 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~ 69 (249)
T PLN03212 26 GPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69 (249)
T ss_pred CCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence 46999999999999999995 8999999985 999999998775
No 18
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=83.43 E-value=1.5 Score=47.54 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhc
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMN 85 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~ 85 (1172)
-.||.||=+.-++|..+||.-|.+||..|+.||---|.--++.+
T Consensus 63 g~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~ 106 (238)
T KOG0048|consen 63 GNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTH 106 (238)
T ss_pred CCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999887776554
No 19
>PLN03091 hypothetical protein; Provisional
Probab=81.42 E-value=1.9 Score=51.35 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHh-cccHHHHHHHHH
Q 044351 43 QWSKGELQRFYEAYRNYGK-DWKKVAAQVR-NRSAEMVEALYN 83 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~-~Rs~~mV~aly~ 83 (1172)
.||+||=++.++++.+||. +|++||..+. +|+..+.+.=|.
T Consensus 16 ~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~ 58 (459)
T PLN03091 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI 58 (459)
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHH
Confidence 5999999999999999997 8999999886 899999988774
No 20
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=79.73 E-value=2.5 Score=50.51 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=40.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 40 LGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
+--.|+-||+-+|=.||.-|||++.||-+.|.+||...+.-.|.-
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYS 230 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHH
Confidence 445899999999999999999999999999999999887766653
No 21
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=73.58 E-value=8.5 Score=48.45 Aligned_cols=87 Identities=23% Similarity=0.362 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCcccchhhhHHHhhccccccccC-------C
Q 044351 43 QWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEG-------S 115 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as~~g~~a~mtdhy~~~~~-------s 115 (1172)
.|+..|...|-+|+-.|-||+.+|+-.|.++||.+.-..|..-| -||-|-|.+++. -
T Consensus 621 ~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK----------------K~~~~~~~~~~dc~r~~~le 684 (907)
T KOG4167|consen 621 KWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK----------------KIMRLGRKIIDDCVRSEELE 684 (907)
T ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH----------------HhccchhhhHhhhhhhhHHH
Confidence 69999999999999999999999999999999998777776544 356666666632 2
Q ss_pred CcccccCCCCCCcchhhhhhhhhhcccCcc
Q 044351 116 DSERESNDASEMPRKSQKRKRAKVQLSASK 145 (1172)
Q Consensus 116 ~se~es~~~~~~~~k~~kr~r~~~~~~~~~ 145 (1172)
+=+.+.|+.++--+|..|+-..++-.+...
T Consensus 685 ~~~~~e~~~pEe~~~~~k~~e~evp~Sp~e 714 (907)
T KOG4167|consen 685 ELEEEEEEDPEEDRKSTKEEESEVPKSPEE 714 (907)
T ss_pred HHHHhhccCcccccccchhhhhcCCCCCCC
Confidence 223345666777778888776666554433
No 22
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=67.96 E-value=3.1 Score=47.53 Aligned_cols=40 Identities=43% Similarity=0.865 Sum_probs=28.9
Q ss_pred HHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCcccchhhhHHHh---hccccccccCCCc
Q 044351 55 AYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTASVVGLIAM---MTDHYNVMEGSDS 117 (1172)
Q Consensus 55 a~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as~~g~~a~---mtdhy~~~~~s~s 117 (1172)
.||+|||.|+ ||||..| +||||- |.-| |-+||.++-.|++
T Consensus 186 ~Y~kyGKh~~--------------EalFytH--~LsLP~-------Flf~~~div~~~~~~~~se~ 228 (330)
T KOG1583|consen 186 TYQKYGKHWK--------------EALFYTH--FLSLPL-------FLFMGDDIVSHWRLAFKSES 228 (330)
T ss_pred HHHHhcCChH--------------HHHHHHH--Hhccch-------HHHhcchHHHHHHHHhcCcc
Confidence 4899999998 7999988 899994 3222 2347777755544
No 23
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=62.57 E-value=7.8 Score=46.63 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHH-HHhcccHHHHHHHHHhccc
Q 044351 43 QWSKGELQRFYEAYRNYGKDWKKVAA-QVRNRSAEMVEALYNMNRA 87 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~GkdWkkva~-~v~~Rs~~mV~aly~~~r~ 87 (1172)
-||--|...|-||+.|||||+..|-+ .++=.|...+-..|.|-++
T Consensus 287 EWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKt 332 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKT 332 (693)
T ss_pred hccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 49999999999999999999888754 4556666666667777654
No 24
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=61.07 E-value=11 Score=38.25 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCccCceEEEE---eCCceEEEecCCC--CCeeeeccCccc
Q 044351 719 RVIAIHPKTRELHDGSVLTI---DHDKCRVQFDRPE--LGVEFVMDIDSM 763 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlav---d~~~YrV~FDrpe--LGv~~VpD~dvm 763 (1172)
+|+|+.|.|--+|.++|... ....|++.|+-.+ -|.+.||.--|+
T Consensus 77 ~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~~~V~~r~Vv 126 (130)
T PF07039_consen 77 KVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGYREVPQRYVV 126 (130)
T ss_dssp EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSBEEE-GGGEE
T ss_pred EEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCcEEEccceEE
Confidence 99999999999999999998 2378999999866 445677655444
No 25
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=52.92 E-value=20 Score=41.82 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=42.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHH
Q 044351 39 KLGPQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 39 ~lgp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~ 83 (1172)
.+.+-|.-+|--.|.++..-.|- +|.-||..|+.|+.+.|+.-|-
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~Hyl 106 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYL 106 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHH
Confidence 47799999999999999999998 9999999999999999998875
No 26
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=52.51 E-value=21 Score=32.29 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHH------hC--------cCHHHHHHHHh----cccHHHHHHHH-HhcccccccCc
Q 044351 42 PQWSKGELQRFYEAYRN------YG--------KDWKKVAAQVR----NRSAEMVEALY-NMNRAYLSLPE 93 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~------~G--------kdWkkva~~v~----~Rs~~mV~aly-~~~r~ylslpe 93 (1172)
+.|+.+|...|+++|.. ++ .-|+.||..|. .||..+++.=+ ++-+.|-.+=+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999988 21 15999999997 89999988654 45566665544
No 27
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=49.71 E-value=26 Score=29.41 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=32.2
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPSN 766 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~~ 766 (1172)
.|+|.. .-..-|.|+|+.+++ ..|.|.|.-=|- .+.|+=.++.++.
T Consensus 8 ~~~a~~-~d~~wyra~I~~~~~~~~~~V~f~D~G~-~~~v~~~~l~~l~ 54 (57)
T smart00333 8 KVAARW-EDGEWYRARIIKVDGEQLYEVFFIDYGN-EEVVPPSDLRPLP 54 (57)
T ss_pred EEEEEe-CCCCEEEEEEEEECCCCEEEEEEECCCc-cEEEeHHHeecCC
Confidence 577777 555779999999999 899999995321 3455544444443
No 28
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=49.44 E-value=23 Score=46.64 Aligned_cols=50 Identities=28% Similarity=0.529 Sum_probs=43.6
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHH
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALY 82 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly 82 (1172)
|.+|..-==+-|++.+...|..|..+||+ +-.+||..|.++|.+.|++-+
T Consensus 816 k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~ 866 (1033)
T PLN03142 816 KEQLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYA 866 (1033)
T ss_pred HHHHHhcCcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHH
Confidence 66665534467999999999999999999 999999999999999999754
No 29
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=48.28 E-value=26 Score=31.63 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRP 750 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrp 750 (1172)
+|.++-|....-|.|.|+.+|. ..|.|+|+-.
T Consensus 11 ~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DG 44 (55)
T PF09465_consen 11 VVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDG 44 (55)
T ss_dssp EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCCcEEEEEEEEecccCceEEEEEcCC
Confidence 7899999988889999999998 6899999863
No 30
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=48.08 E-value=13 Score=46.40 Aligned_cols=36 Identities=25% Similarity=0.542 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEM 77 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~m 77 (1172)
-+|+-.|=++..++..+||+ .|-|+|-.+++||..+
T Consensus 413 ~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q 449 (939)
T KOG0049|consen 413 ERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQ 449 (939)
T ss_pred CceeecchHHHHHHHHHHccchHHHHHHHccccchhH
Confidence 48999999999999999999 9999999999999844
No 31
>cd08782 Death_DAPK1 Death domain found in death-associated protein kinase 1. Death domain (DD) found in death-associated protein kinase 1 (DAPK1). DAPK1 is composed of several functional domains, including a kinase domain, a CaM regulatory domain, ankyrin repeats, a cytoskeletal binding domain and a C-terminal DD. It plays important roles in a diverse range of signal transduction pathways including apoptosis, growth factor signalling, and autophagy. Loss of DAPK1 expression, usually because of DNA methylation, is implicated in many tumor types. DAPK1 is highly abundant in the brain and has also been associated with neurodegeneration. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as ad
Probab=43.81 E-value=11 Score=35.56 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=26.2
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhc
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMN 85 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~ 85 (1172)
++||++.|.|+ ...|+||+.+|..++-= +.+..++..+
T Consensus 3 R~~L~~lLdpp-------------~~~g~DW~~LA~~Lg~~--~~~~~~~~~~ 40 (82)
T cd08782 3 RRKLSRLLDPP-------------DPMGRDWCLLAVNLGLT--DLVPQLDTNS 40 (82)
T ss_pred HHHHHHHcCCC-------------CCCCCCHHHHHHHcCCh--hhHHHHHhcC
Confidence 46777777775 67899999999999821 2244555443
No 32
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=41.66 E-value=35 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.4
Q ss_pred eEEEEcCCCCCccCceEEEE-eCCceEEEecCCCCCeeeeccCcccCCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTI-DHDKCRVQFDRPELGVEFVMDIDSMPSNPL 768 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlav-d~~~YrV~FDrpeLGv~~VpD~dvmp~~p~ 768 (1172)
+|+|+...-.--|.|+|... +...|.|.|+ ...+..|+..++++....
T Consensus 3 ~VlAR~~~DG~YY~GtV~~~~~~~~~lV~f~--~~~~~~v~~~~iI~~~~~ 51 (124)
T PF15057_consen 3 KVLARREEDGFYYPGTVKKCVSSGQFLVEFD--DGDTQEVPISDIIALSDA 51 (124)
T ss_pred eEEEeeCCCCcEEeEEEEEccCCCEEEEEEC--CCCEEEeChHHeEEccCc
Confidence 79999887666699999996 5589999994 445677777777766543
No 33
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=40.31 E-value=33 Score=43.14 Aligned_cols=42 Identities=33% Similarity=0.528 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
.|+.+|=...+.|..+||- ||-||-..|++||-.|.+.=|.-
T Consensus 362 ~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 362 RWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN 404 (939)
T ss_pred CCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence 6999999999999999986 99999999999999999998863
No 34
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=39.15 E-value=68 Score=28.84 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHh-----C------------cCHHHHHHHHh-----cccHHHHHHHHHhcc
Q 044351 41 GPQWSKGELQRFYEAYRNY-----G------------KDWKKVAAQVR-----NRSAEMVEALYNMNR 86 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~-----G------------kdWkkva~~v~-----~Rs~~mV~aly~~~r 86 (1172)
.|.||.+|.+.+.+.+.+| | +-|..|++.+. .||..+++--|.--+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4899999999999998887 4 25999999886 799999988776443
No 35
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=35.73 E-value=42 Score=32.95 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHh-----cc-----------c-HHHHHHHHHhcccccccCcccchhhhHHH
Q 044351 45 SKGELQRFYEAYRNYGKDWKKVAAQVR-----NR-----------S-AEMVEALYNMNRAYLSLPEGTASVVGLIA 103 (1172)
Q Consensus 45 SkeEl~~Fyea~r~~GkdWkkva~~v~-----~R-----------s-~~mV~aly~~~r~ylslpeg~as~~g~~a 103 (1172)
+.++++.|-+ .-|++||+|+-.++ -+ . ..+.|-.|.|=|.|..---..|++..|+.
T Consensus 1 ~~~~~q~~~~---nvGr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~ 73 (90)
T cd08780 1 TPADQQHFAK---SVGKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQ 73 (90)
T ss_pred CHHHHHHHHH---HHhHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3567777765 45999999999998 11 1 12566667777777665444577777664
No 36
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=35.37 E-value=23 Score=43.97 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=48.6
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhc--ccccccCc
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMN--RAYLSLPE 93 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~--r~ylslpe 93 (1172)
|+...| .|+..|-+.||.++..+|-+..-|++.-+.|+..+|++=|.+- |+=|-|+.
T Consensus 405 k~~~~~----~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~p~~l~~ 463 (584)
T KOG2009|consen 405 KKLETD----KWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRNPLKLNT 463 (584)
T ss_pred CccccC----cccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhccchhhhh
Confidence 555555 8999999999999999999999999999999999999999875 44444444
No 37
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=34.22 E-value=61 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCccCceEEEEe-CCceEEEecC
Q 044351 719 RVIAIHPKTRELHDGSVLTID-HDKCRVQFDR 749 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd-~~~YrV~FDr 749 (1172)
.|.|..+.-...|.|+|+.++ ...|.|.|.-
T Consensus 3 ~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~D 34 (48)
T cd04508 3 LCLAKYSDDGKWYRAKITSILSDGKVEVFFVD 34 (48)
T ss_pred EEEEEECCCCeEEEEEEEEECCCCcEEEEEEc
Confidence 366777765678999999999 5789999984
No 38
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.
Probab=30.64 E-value=61 Score=29.21 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=28.3
Q ss_pred HhCcCHHHHHHHHhcccHHHHHHHHHhccccccc
Q 044351 58 NYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSL 91 (1172)
Q Consensus 58 ~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylsl 91 (1172)
.-|--|..|+-.+-.|+..+|++|+..|..+..+
T Consensus 6 ~~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~ 39 (60)
T PF05489_consen 6 TQGDTLDLIAYRHYGREDGAVEALLEANPGLADT 39 (60)
T ss_pred eCcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhc
Confidence 3577899999888889988889999999987544
No 39
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=28.65 E-value=1e+02 Score=37.87 Aligned_cols=78 Identities=28% Similarity=0.353 Sum_probs=53.0
Q ss_pred CCccchhhHHHHHhhcCCCCCC------------CHHHHHHHHHHHHhHhcc----eE-------EEEcCCCCCccCceE
Q 044351 679 IPRLTRVEWGVIRSSLGKPRRL------------SKRFLHDEREKLKQYRES----RV-------IAIHPKTRELHDGSV 735 (1172)
Q Consensus 679 ~~~LtR~EW~~IRr~mGKPRRf------------S~aFl~EER~kLE~~R~~----kV-------iA~hp~~r~L~dG~V 735 (1172)
-+.+|+.||..|.|.---|=|+ |.+|+.-|-++|-.+-=. |. ||.-| ...||+.-|
T Consensus 259 N~HiTaEEWevihr~d~dplrlpldfsaqggdgas~a~aaTeaQ~lf~~Dia~AiHkLfaeldIdiada~-~hRLYdaEi 337 (724)
T KOG4485|consen 259 NPHITAEEWEVIHRIDMDPLRLPLDFSAQGGDGASEAFAATEAQELFHSDIAHAIHKLFAELDIDIADAP-GHRLYDAEI 337 (724)
T ss_pred CCccCHHHHHHHHHhcCCcccCcccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcccCC-cceeeeeee
Confidence 3579999999999977777665 478999998888776544 22 23223 346888888
Q ss_pred EEEeCC-ceEEEecCCCCCeeeec
Q 044351 736 LTIDHD-KCRVQFDRPELGVEFVM 758 (1172)
Q Consensus 736 lavd~~-~YrV~FDrpeLGv~~Vp 758 (1172)
+.-|++ ++.|.--|.+ .+..||
T Consensus 338 iehd~disfilicP~ad-dsCaVP 360 (724)
T KOG4485|consen 338 IEHDDDISFILICPRAD-DSCAVP 360 (724)
T ss_pred eccCCCceEEEEecCcc-cccccC
Confidence 877775 5666655544 234444
No 40
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=28.15 E-value=22 Score=42.33 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCHHHHHHHH-----h-cccHHHH-HHHHHhccccccc
Q 044351 41 GPQWSKGELQRFYEAYRNYGKDWKKVAAQV-----R-NRSAEMV-EALYNMNRAYLSL 91 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~GkdWkkva~~v-----~-~Rs~~mV-~aly~~~r~ylsl 91 (1172)
..-|||+|.+..|+.-++|-=-|=.|+.+- . .||+|.. +-.|..+|.||.-
T Consensus 130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 377999999999999999999999999884 4 4998776 4578889998864
No 41
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=27.97 E-value=56 Score=35.81 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHh-ccc----------------------HHHHHHHHHhcccc
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVR-NRS----------------------AEMVEALYNMNRAY 88 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~-~Rs----------------------~~mV~aly~~~r~y 88 (1172)
-.||.||=+..-+..++||. .|-.|+...+ .|+ .+.-+.|+..|+.|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~ 80 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALL 80 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999 7999999998 664 45556677777666
No 42
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=27.57 E-value=59 Score=30.68 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.2
Q ss_pred HHHHHHHHhCcCHHHHHHHHhc----------ccHHHHHHHHHhcccccccCcccchhhhHHHhh
Q 044351 51 RFYEAYRNYGKDWKKVAAQVRN----------RSAEMVEALYNMNRAYLSLPEGTASVVGLIAMM 105 (1172)
Q Consensus 51 ~Fyea~r~~GkdWkkva~~v~~----------Rs~~mV~aly~~~r~ylslpeg~as~~g~~a~m 105 (1172)
.|...-..-|.+|+++|-.++- ...+..+.-|.|=+.+..-.-+.|+..-|+...
T Consensus 9 ~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL 73 (86)
T cd08318 9 QITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITAL 73 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 3444557789999999988872 122456777888888877766677776666543
No 43
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=24.74 E-value=71 Score=40.09 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=34.7
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhccc
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRS 74 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs 74 (1172)
+.++.+----.|+++|.+.-+..--.||.+|+.|+..|+.+.
T Consensus 376 ~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P 417 (607)
T KOG0051|consen 376 AYTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMP 417 (607)
T ss_pred cCCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCc
Confidence 555666434579999999999999999999999999987543
No 44
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=23.08 E-value=1.3e+02 Score=32.12 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHh-c----------ccHHHHHHHHHhcccccc---cCcccchhhhHHHhhc
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVR-N----------RSAEMVEALYNMNRAYLS---LPEGTASVVGLIAMMT 106 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~-~----------Rs~~mV~aly~~~r~yls---lpeg~as~~g~~a~mt 106 (1172)
=+||++++++||.-++ ++ -|..+-..+. + --+..-++|+.-....-+ .|. |--|..++=.
T Consensus 42 ~~~s~~~~e~~Y~~~~--~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~~~~pg---sir~~f~~~~ 116 (156)
T KOG0888|consen 42 VQLSKELLEEHYSDLK--SKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAARAAAPG---SIRGDFGVDD 116 (156)
T ss_pred ecCCHHHHHHHHHHhc--CCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcccccccCCC---CeeeeecccC
Confidence 4899999999999887 78 6888877765 2 223334556554433333 332 4556666554
Q ss_pred cccccccCCCcc
Q 044351 107 DHYNVMEGSDSE 118 (1172)
Q Consensus 107 dhy~~~~~s~se 118 (1172)
-+ |+..||||.
T Consensus 117 ~r-n~~HgSDs~ 127 (156)
T KOG0888|consen 117 GR-NSIHGSDSV 127 (156)
T ss_pred CC-CccccCCcH
Confidence 44 888888873
No 45
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=22.15 E-value=29 Score=34.33 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCccchhhHHHHHhhcCCCCCCCHHHHH
Q 044351 678 HIPRLTRVEWGVIRSSLGKPRRLSKRFLH 706 (1172)
Q Consensus 678 ~~~~LtR~EW~~IRr~mGKPRRfS~aFl~ 706 (1172)
+-..|.+.||..||+.|-++++|...||.
T Consensus 67 ~d~~L~~~El~~l~~~l~~~e~C~~~F~~ 95 (113)
T PF10591_consen 67 KDGVLDRSELKPLRRPLMPPEHCARPFFR 95 (113)
T ss_dssp -SSEE-TTTTGGGGSTTSTTGGGHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44579999999999999999999999995
No 46
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=21.80 E-value=72 Score=28.95 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHHHHHH-hCcCHHHHHHHHhcccHHH------------HHHHHHhcccccccCcccchhhhHHHhhc
Q 044351 49 LQRFYEAYRN-YGKDWKKVAAQVRNRSAEM------------VEALYNMNRAYLSLPEGTASVVGLIAMMT 106 (1172)
Q Consensus 49 l~~Fyea~r~-~GkdWkkva~~v~~Rs~~m------------V~aly~~~r~ylslpeg~as~~g~~a~mt 106 (1172)
.++|+..... -|++|+++|..++-- ... -+..|.|=+.|..-..+.|++..|+..+-
T Consensus 5 ~~~~~~l~~~~~g~~W~~la~~Lg~~-~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~ 74 (88)
T smart00005 5 REKLAKLLDHPLGLDWRELARKLGLS-EADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNATLGTLLEALR 74 (88)
T ss_pred HHHHHHHHcCccchHHHHHHHHcCCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 3567777766 799999999999831 222 23444554444444444688888877654
No 47
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=21.48 E-value=74 Score=30.10 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=35.3
Q ss_pred HHHHHHHHh-CcCHHHHHHHHhc----------c-cHHHHHHHHHhcccccccCcccchhhhHHHh
Q 044351 51 RFYEAYRNY-GKDWKKVAAQVRN----------R-SAEMVEALYNMNRAYLSLPEGTASVVGLIAM 104 (1172)
Q Consensus 51 ~Fyea~r~~-GkdWkkva~~v~~----------R-s~~mV~aly~~~r~ylslpeg~as~~g~~a~ 104 (1172)
.+|+....+ |++|+.++-.++- . .-+.-+..|.|=+.+..-....|++..|+.-
T Consensus 3 ~~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~a 68 (86)
T cd08306 3 AAFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKA 68 (86)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHH
Confidence 445555555 9999999998871 1 1123466777777777766667887777643
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=20.71 E-value=1.7e+02 Score=33.51 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHH----------hCcCHHHHHHHHh----cccHHHHHHHHHh
Q 044351 41 GPQWSKGELQRFYEAYRN----------YGKDWKKVAAQVR----NRSAEMVEALYNM 84 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~----------~GkdWkkva~~v~----~Rs~~mV~aly~~ 84 (1172)
-++|+.+|...+.++|.+ -|..|+.||..+. .||..++++-|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~n 111 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIEN 111 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 489999999888877743 2678999999665 8999998887643
No 49
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=20.67 E-value=1.9e+02 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=32.3
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCC-eeeeccCcccCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELG-VEFVMDIDSMPSN 766 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLG-v~~VpD~dvmp~~ 766 (1172)
.|-|+.+....-|.|+|+.++. +.|.|.|..-+.| .+.|+=.++-|..
T Consensus 8 ~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 8 RVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHP 57 (61)
T ss_pred EEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCC
Confidence 5666666655778999999998 8899999862233 4444444444433
Done!