Query 044351
Match_columns 1172
No_of_seqs 108 out of 116
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:41:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_B REST corepressor 1; ami 98.6 1.7E-08 5.8E-13 115.6 5.6 66 40-115 379-444 (482)
2 2eqr_A N-COR1, N-COR, nuclear 98.6 5.2E-08 1.8E-12 83.4 6.1 47 40-86 11-57 (61)
3 2yus_A SWI/SNF-related matrix- 98.6 5.5E-08 1.9E-12 87.6 6.6 56 28-83 5-60 (79)
4 2yqk_A Arginine-glutamic acid 98.5 1.2E-07 4.1E-12 81.9 6.2 50 38-87 6-56 (63)
5 2iw5_B Protein corest, REST co 98.4 1.9E-07 6.6E-12 98.4 6.6 54 39-92 131-184 (235)
6 2crg_A Metastasis associated p 98.1 3.4E-06 1.2E-10 74.4 5.1 46 42-87 9-55 (70)
7 2cu7_A KIAA1915 protein; nucle 98.0 5.7E-06 2E-10 72.5 6.1 42 42-83 10-51 (72)
8 1wgx_A KIAA1903 protein; MYB D 97.9 7.4E-06 2.5E-10 73.5 5.2 51 41-97 8-62 (73)
9 4a69_C Nuclear receptor corepr 97.9 9.3E-06 3.2E-10 75.3 5.1 48 40-87 42-89 (94)
10 2elk_A SPCC24B10.08C protein; 97.9 2.4E-05 8.1E-10 66.3 6.4 44 40-83 8-53 (58)
11 1x41_A Transcriptional adaptor 97.8 3.3E-05 1.1E-09 65.6 6.5 45 40-84 7-52 (60)
12 2yum_A ZZZ3 protein, zinc fing 97.7 2.5E-05 8.7E-10 68.5 5.0 42 42-83 9-56 (75)
13 2ltp_A Nuclear receptor corepr 96.8 7E-06 2.4E-10 75.1 0.0 51 41-91 16-66 (89)
14 2cqr_A RSGI RUH-043, DNAJ homo 97.5 6.5E-05 2.2E-09 67.1 4.2 48 37-84 14-65 (73)
15 1guu_A C-MYB, MYB proto-oncoge 97.5 0.00011 3.7E-09 60.3 5.2 43 42-84 4-47 (52)
16 2d9a_A B-MYB, MYB-related prot 97.4 0.00016 5.6E-09 60.9 5.7 43 42-84 9-52 (60)
17 1gvd_A MYB proto-oncogene prot 97.3 0.00021 7.1E-09 58.7 4.8 43 42-84 4-47 (52)
18 3osg_A MYB21; transcription-DN 97.3 0.00018 6.3E-09 68.7 4.6 55 43-97 64-118 (126)
19 2dim_A Cell division cycle 5-l 97.2 0.00041 1.4E-08 60.2 5.8 43 42-84 10-53 (70)
20 2cqq_A RSGI RUH-037, DNAJ homo 97.2 0.00039 1.3E-08 61.9 5.8 44 41-85 8-55 (72)
21 2din_A Cell division cycle 5-l 97.2 0.0005 1.7E-08 59.1 5.8 42 42-84 10-51 (66)
22 2llk_A Cyclin-D-binding MYB-li 97.1 0.00065 2.2E-08 60.8 6.1 42 42-84 24-65 (73)
23 2k9n_A MYB24; R2R3 domain, DNA 97.0 0.00077 2.6E-08 62.7 6.1 44 42-85 54-97 (107)
24 4eef_G F-HB80.4, designed hema 97.0 5.3E-05 1.8E-09 68.3 -1.8 44 41-84 20-67 (74)
25 1gv2_A C-MYB, MYB proto-oncoge 97.0 0.00053 1.8E-08 63.1 4.7 43 42-84 57-99 (105)
26 1w0t_A Telomeric repeat bindin 97.0 0.00097 3.3E-08 55.1 5.6 42 43-84 4-48 (53)
27 2cjj_A Radialis; plant develop 96.9 0.00096 3.3E-08 62.1 5.4 44 42-85 9-56 (93)
28 1h8a_C AMV V-MYB, MYB transfor 96.8 0.00095 3.2E-08 63.7 4.6 43 42-84 80-122 (128)
29 1ity_A TRF1; helix-turn-helix, 96.7 0.0022 7.5E-08 55.6 5.6 43 42-84 11-56 (69)
30 3osg_A MYB21; transcription-DN 96.7 0.0016 5.5E-08 62.2 5.1 43 42-84 12-54 (126)
31 2k9n_A MYB24; R2R3 domain, DNA 96.5 0.0031 1.1E-07 58.6 5.8 42 43-84 3-45 (107)
32 3sjm_A Telomeric repeat-bindin 96.5 0.0033 1.1E-07 54.5 5.5 41 43-83 13-56 (64)
33 3zqc_A MYB3; transcription-DNA 96.3 0.0024 8.2E-08 61.3 4.2 43 42-84 55-97 (131)
34 1gv2_A C-MYB, MYB proto-oncoge 96.3 0.0036 1.2E-07 57.6 5.2 44 41-84 4-48 (105)
35 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0044 1.5E-07 59.1 5.8 43 42-84 28-71 (128)
36 1h89_C C-MYB, MYB proto-oncoge 96.3 0.0033 1.1E-07 61.9 4.8 43 42-84 111-153 (159)
37 1x58_A Hypothetical protein 49 95.8 0.0066 2.3E-07 53.3 4.1 42 42-83 9-53 (62)
38 3zqc_A MYB3; transcription-DNA 95.3 0.0068 2.3E-07 58.2 2.6 43 42-84 3-46 (131)
39 1h89_C C-MYB, MYB proto-oncoge 95.2 0.018 6.3E-07 56.6 5.3 43 42-84 59-102 (159)
40 2xag_B REST corepressor 1; ami 95.0 0.004 1.4E-07 72.0 0.0 46 42-87 190-235 (482)
41 2ckx_A NGTRF1, telomere bindin 94.8 0.033 1.1E-06 50.9 5.2 49 43-91 2-55 (83)
42 4b4c_A Chromodomain-helicase-D 94.5 0.029 9.8E-07 57.1 4.6 42 43-84 9-55 (211)
43 1irz_A ARR10-B; helix-turn-hel 94.0 0.07 2.4E-06 47.1 5.4 48 42-89 8-60 (64)
44 1ofc_X ISWI protein; nuclear p 92.9 0.063 2.2E-06 59.1 4.1 52 33-84 102-154 (304)
45 2aje_A Telomere repeat-binding 91.9 0.14 4.8E-06 48.7 4.6 44 42-85 14-62 (105)
46 2roh_A RTBP1, telomere binding 91.5 0.21 7.2E-06 48.8 5.4 43 42-84 32-79 (122)
47 3hm5_A DNA methyltransferase 1 91.4 0.23 7.9E-06 46.6 5.4 48 33-83 25-77 (93)
48 2juh_A Telomere binding protei 90.4 0.26 8.8E-06 48.1 4.8 50 42-91 18-72 (121)
49 2xb0_X Chromo domain-containin 87.2 0.57 1.9E-05 50.9 5.3 42 43-84 5-51 (270)
50 1ign_A Protein (RAP1); RAP1,ye 86.6 0.39 1.3E-05 51.7 3.5 43 42-84 9-57 (246)
51 2ebi_A DNA binding protein GT- 79.3 2.2 7.5E-05 38.2 4.9 53 41-93 4-71 (86)
52 4iej_A DNA methyltransferase 1 76.2 3.6 0.00012 38.8 5.5 48 33-83 25-77 (93)
53 2y9y_A Imitation switch protei 71.1 3 0.0001 47.4 4.3 52 33-84 115-168 (374)
54 1ug2_A 2610100B20RIK gene prod 64.0 11 0.00037 35.8 5.8 40 41-80 33-75 (95)
55 2equ_A PHD finger protein 20-l 58.8 11 0.00039 33.8 4.8 46 719-767 15-61 (74)
56 1mhn_A SurviVal motor neuron p 58.1 19 0.00064 30.3 5.8 46 719-766 9-57 (59)
57 1g5v_A SurviVal motor neuron p 55.6 18 0.00063 33.3 5.8 47 719-767 16-65 (88)
58 3mop_A Myeloid differentiation 54.3 3.7 0.00013 39.3 1.0 55 33-105 12-75 (110)
59 4a4f_A SurviVal of motor neuro 53.0 22 0.00074 30.5 5.5 47 719-767 14-63 (64)
60 4hcz_A PHD finger protein 1; p 49.5 14 0.00049 32.3 3.7 32 719-751 9-42 (58)
61 2l8d_A Lamin-B receptor; DNA b 42.6 41 0.0014 30.1 5.6 46 719-766 15-62 (66)
62 2lr8_A CAsp8-associated protei 48.3 5.3 0.00018 36.1 0.0 38 42-80 15-55 (70)
63 2g3r_A Tumor suppressor P53-bi 41.9 21 0.00072 35.2 4.0 50 719-773 10-60 (123)
64 2eqj_A Metal-response element- 40.0 24 0.00084 31.6 3.8 30 719-750 19-51 (66)
65 3qii_A PHD finger protein 20; 38.3 26 0.00091 32.6 3.9 46 719-767 27-73 (85)
66 3mea_A SAGA-associated factor 36.7 21 0.00072 37.0 3.4 34 718-751 121-157 (180)
67 3p8d_A Medulloblastoma antigen 36.4 41 0.0014 30.0 4.7 46 719-767 12-58 (67)
68 2dig_A Lamin-B receptor; tudor 33.3 63 0.0022 29.1 5.3 44 719-764 18-63 (68)
69 2d9t_A Tudor domain-containing 33.1 56 0.0019 29.1 5.1 47 719-767 15-64 (78)
70 2xk0_A Polycomb protein PCL; t 32.1 35 0.0012 30.8 3.5 32 719-751 21-52 (69)
71 1bm4_A Protein (moloney murine 31.9 21 0.0007 28.2 1.8 13 48-60 18-30 (32)
72 2m0o_A PHD finger protein 1; t 31.7 28 0.00095 32.1 2.9 39 719-759 32-73 (79)
73 2ldm_A Uncharacterized protein 37.3 10 0.00035 34.9 0.0 44 719-765 12-56 (81)
74 2e5p_A Protein PHF1, PHD finge 30.3 43 0.0015 30.2 3.7 31 719-750 15-47 (68)
75 1bax_A M-PMV MA, M-PMV matrix 28.4 21 0.00072 33.8 1.6 31 664-694 60-90 (94)
76 1ssf_A Transformation related 26.5 34 0.0012 34.9 2.8 44 719-762 14-58 (156)
77 3s6w_A Tudor domain-containing 26.4 66 0.0023 26.4 4.1 45 719-765 7-54 (54)
78 2qqr_A JMJC domain-containing 25.4 43 0.0015 32.7 3.2 31 719-750 11-42 (118)
79 3pnw_C Tudor domain-containing 22.2 1E+02 0.0034 27.6 4.7 46 719-766 23-71 (77)
80 2mys_B Myosin; muscle protein, 21.6 1.9E+02 0.0065 26.4 6.7 69 33-109 9-88 (166)
No 1
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.63 E-value=1.7e-08 Score=115.59 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=56.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCcccchhhhHHHhhccccccccCC
Q 044351 40 LGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGS 115 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as~~g~~a~mtdhy~~~~~s 115 (1172)
..++||.+|++.|+++|++||+||.+||..|++||+.||++.|..+|..|.|.+ |+-+|..-.+..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~----------il~e~e~~~~~~ 444 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE----------VLQEWEAEHGKE 444 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHH----------HHHHHHTC----
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChHH----------HHHHHHHhhCCc
Confidence 467999999999999999999999999999999999999999999999999876 566664444433
No 2
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=5.2e-08 Score=83.38 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcc
Q 044351 40 LGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNR 86 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r 86 (1172)
.+..||.+|++.|.++|.+||++|.+||..|++||+.+|..-|.+++
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999876
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.59 E-value=5.5e-08 Score=87.58 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=49.5
Q ss_pred chhhhhhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHH
Q 044351 28 SKSKQKKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 28 ~k~k~KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~ 83 (1172)
.|.+.|.|..++....||.||.++|++|+.+||.+|.+||..|++||..+++.=|.
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHT
T ss_pred ccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 34444666677789999999999999999999999999999999999999998775
No 4
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=81.86 Aligned_cols=50 Identities=20% Similarity=0.525 Sum_probs=45.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCcCHHHHHHH-HhcccHHHHHHHHHhccc
Q 044351 38 DKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQ-VRNRSAEMVEALYNMNRA 87 (1172)
Q Consensus 38 D~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~-v~~Rs~~mV~aly~~~r~ 87 (1172)
+...+.||.||++.|.++|.+|||||.+|+.. |++||+.+|-..|.|+|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 34568999999999999999999999999984 999999999999998763
No 5
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.43 E-value=1.9e-07 Score=98.45 Aligned_cols=54 Identities=22% Similarity=0.448 Sum_probs=50.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccC
Q 044351 39 KLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLP 92 (1172)
Q Consensus 39 ~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslp 92 (1172)
....+||.||.+.|++|+++||+||.+||..|++||+.+|+..|.++|.-|.|-
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD 184 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID 184 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhHH
Confidence 346699999999999999999999999999999999999999999999888763
No 6
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.06 E-value=3.4e-06 Score=74.40 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHH-HHhcccHHHHHHHHHhccc
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAA-QVRNRSAEMVEALYNMNRA 87 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~-~v~~Rs~~mV~aly~~~r~ 87 (1172)
..||.+|++.|.++|.+|||||.+|+. .|++||+.+|-..|.+.+.
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 55 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcC
Confidence 379999999999999999999999999 5999999999999988663
No 7
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.03 E-value=5.7e-06 Score=72.46 Aligned_cols=42 Identities=19% Similarity=0.503 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~ 83 (1172)
-.||.||.+.|++++..||.+|.+||..|++||..+|+.-|.
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999875
No 8
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.95 E-value=7.4e-06 Score=73.49 Aligned_cols=51 Identities=35% Similarity=0.594 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC----HHHHHHHHhcccHHHHHHHHHhcccccccCcccch
Q 044351 41 GPQWSKGELQRFYEAYRNYGKD----WKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTAS 97 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gkd----Wkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as 97 (1172)
...||.+|...|-+|+..|+++ |.+||++|++||++.|..=|. .||.|..|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~------~l~~~~~s 62 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYM------ENPRGKGS 62 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHH------HSSSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHH------HHHhcccc
Confidence 4679999999999999999984 999999999999999996554 55666554
No 9
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.90 E-value=9.3e-06 Score=75.30 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=44.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhccc
Q 044351 40 LGPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRA 87 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ 87 (1172)
.-..||.+|++.|-++|..|||+|.+|+..|++||+..+-.-|.+.|.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence 345799999999999999999999999999999999999999988774
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.85 E-value=2.4e-05 Score=66.29 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-cCHHHHHHHHh-cccHHHHHHHHH
Q 044351 40 LGPQWSKGELQRFYEAYRNYG-KDWKKVAAQVR-NRSAEMVEALYN 83 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~G-kdWkkva~~v~-~Rs~~mV~aly~ 83 (1172)
+...||.||-+++++++.+|| .+|.+||..|+ +||..+++.=|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~ 53 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 456799999999999999999 79999999999 999999998775
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.80 E-value=3.3e-05 Score=65.61 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 40 LGPQWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 40 lgp~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
....||.||-+.+.+++.+|| .+|++||..|++||..+++.=|..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 456899999999999999999 799999999999999999998863
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2.5e-05 Score=68.53 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhC------cCHHHHHHHHhcccHHHHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYG------KDWKKVAAQVRNRSAEMVEALYN 83 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G------kdWkkva~~v~~Rs~~mV~aly~ 83 (1172)
..||.||.+.|.+++.+|| .+|.+||..|.+||..+|+.=|.
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~ 56 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ 56 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 4799999999999999999 79999999999999999998883
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.81 E-value=7e-06 Score=75.05 Aligned_cols=51 Identities=16% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhccccccc
Q 044351 41 GPQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSL 91 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylsl 91 (1172)
...||.||-+.|++++..||.+|..||..|++||..+|+.-|..+..-+.|
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 347999999999999999999999999999999999999999866555544
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.50 E-value=6.5e-05 Score=67.10 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=43.4
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhC----cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 37 SDKLGPQWSKGELQRFYEAYRNYG----KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 37 sD~lgp~WSkeEl~~Fyea~r~~G----kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
++.-...||.+|-..|.+|+..|| ..|.+||..|++||..+|+.=|..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 555667899999999999999999 579999999999999999988764
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.49 E-value=0.00011 Score=60.27 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+++++..||. +|.+||..|.+||..+++.=|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 47999999999999999999 99999999999999999988754
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.44 E-value=0.00016 Score=60.91 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||.||-+.+.+++.+|| ++|.+||..|.+||..+++.-|..
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 4799999999999999999 599999999999999999998863
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.31 E-value=0.00021 Score=58.71 Aligned_cols=43 Identities=23% Similarity=0.528 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+.+++.+||. +|.+||..|.+||..+++.=|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 47999999999999999997 79999999999999999988863
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.27 E-value=0.00018 Score=68.70 Aligned_cols=55 Identities=16% Similarity=0.369 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhcccccccCcccch
Q 044351 43 QWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRAYLSLPEGTAS 97 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ylslpeg~as 97 (1172)
.||.||-+.+.+++..||..|.+||..|++||..+|+.=|......+.||.+.-+
T Consensus 64 ~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~~~~~ 118 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQM 118 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC------
T ss_pred cCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 6999999999999999999999999999999999999999998888999986544
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00041 Score=60.23 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||.||-+++.+++.+|| .+|.+||..|.+||..+++.-|..
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3799999999999999999 799999999999999999998864
No 20
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.22 E-value=0.00039 Score=61.90 Aligned_cols=44 Identities=20% Similarity=0.487 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCc----CHHHHHHHHhcccHHHHHHHHHhc
Q 044351 41 GPQWSKGELQRFYEAYRNYGK----DWKKVAAQVRNRSAEMVEALYNMN 85 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gk----dWkkva~~v~~Rs~~mV~aly~~~ 85 (1172)
...||.||.++|-.|+.+||. -|.+||++| +||+++|+.=|...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 457999999999999999984 599999999 79999999877654
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0005 Score=59.06 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+++++..||..|.+||. +..||..+++.=|..
T Consensus 10 ~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~ 51 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEF 51 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHH
Confidence 369999999999999999999999999 778999999988864
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.11 E-value=0.00065 Score=60.77 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||+||=+..++++..||..|.+||..+ +||..+|+--|..
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH
Confidence 47999999999999999999999999999 9999999988863
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.03 E-value=0.00077 Score=62.67 Aligned_cols=44 Identities=27% Similarity=0.537 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhc
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMN 85 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~ 85 (1172)
..||.||-+.+++++..||..|.+||..|++||..+|+.-|...
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999888643
No 24
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.02 E-value=5.3e-05 Score=68.31 Aligned_cols=44 Identities=39% Similarity=0.569 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcC----HHHHHHHHhcccHHHHHHHHHh
Q 044351 41 GPQWSKGELQRFYEAYRNYGKD----WKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gkd----Wkkva~~v~~Rs~~mV~aly~~ 84 (1172)
++.||.+|.+.|-.|+.+|+++ |.+||++|++||++.|+.-|..
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5689999999999999999994 9999999999999999987764
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.00 E-value=0.00053 Score=63.14 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+++++..||..|.+||..|++||..+|+.-|..
T Consensus 57 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999998864
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.99 E-value=0.00097 Score=55.14 Aligned_cols=42 Identities=24% Similarity=0.545 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhC-cCHHHHHHHHh--cccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYG-KDWKKVAAQVR--NRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~G-kdWkkva~~v~--~Rs~~mV~aly~~ 84 (1172)
.||.||-+..++++.+|| ..|.+||..++ +||..+++.=|..
T Consensus 4 ~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 699999999999999999 69999999999 9999999987753
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.90 E-value=0.00096 Score=62.09 Aligned_cols=44 Identities=32% Similarity=0.532 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhC----cCHHHHHHHHhcccHHHHHHHHHhc
Q 044351 42 PQWSKGELQRFYEAYRNYG----KDWKKVAAQVRNRSAEMVEALYNMN 85 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G----kdWkkva~~v~~Rs~~mV~aly~~~ 85 (1172)
..||.||-+.|.+|+.+|| ..|.+||+.|++||..+|+.=|...
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4799999999999999997 4699999999999999999888654
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.78 E-value=0.00095 Score=63.66 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||+||-+.+++++..||..|.+||..|++||..+|+.=|..
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 4699999999999999999999999999999999999988864
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.67 E-value=0.0022 Score=55.65 Aligned_cols=43 Identities=23% Similarity=0.531 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-cCHHHHHHHHh--cccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYG-KDWKKVAAQVR--NRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G-kdWkkva~~v~--~Rs~~mV~aly~~ 84 (1172)
-.||.||-+..++++.+|| ..|.+||..++ +||..+++.=|..
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 3699999999999999999 69999999999 9999999987764
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.65 E-value=0.0016 Score=62.21 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||+||-++..+++.+||.+|++||..|.+||..+++.=|..
T Consensus 12 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 4699999999999999999999999999999999999988863
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.50 E-value=0.0031 Score=58.60 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
.||.||-+++.+++.+||. +|.+||..|++||..+++.=|..
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 6999999999999999996 99999999999999999988853
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.48 E-value=0.0033 Score=54.54 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHh--cccHHHHHHHHH
Q 044351 43 QWSKGELQRFYEAYRNYGK-DWKKVAAQVR--NRSAEMVEALYN 83 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~--~Rs~~mV~aly~ 83 (1172)
.||.||-+...+++.+||. +|.+||..+. +||..+++.=|.
T Consensus 13 ~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 13 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHH
Confidence 5999999999999999995 9999999976 999999987763
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.35 E-value=0.0024 Score=61.30 Aligned_cols=43 Identities=19% Similarity=0.520 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+++++..||..|.+||..|++||..+|+.=|..
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3699999999999999999999999999999999999988753
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.34 E-value=0.0036 Score=57.60 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 41 GPQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
...||.||-+++.+++.+||. +|.+||..|.+||..+++.=|..
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 457999999999999999997 89999999999999999987754
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.31 E-value=0.0044 Score=59.11 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||.||-+++.+++.+||. +|.+||..|.+||..+++.=|..
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 36999999999999999996 79999999999999999988864
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.27 E-value=0.0033 Score=61.89 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+++++..||..|.+||..|++||..+|+.=|..
T Consensus 111 ~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~ 153 (159)
T 1h89_C 111 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999988864
No 37
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.83 E-value=0.0066 Score=53.30 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHH---HHhcccHHHHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAA---QVRNRSAEMVEALYN 83 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~---~v~~Rs~~mV~aly~ 83 (1172)
-.||+||-+.-.+.+++||+.|++|+. .+..||.-++..-|.
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 369999999999999999999999996 566999999987663
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.32 E-value=0.0068 Score=58.20 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-cCHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYG-KDWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~G-kdWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||+||-+...+++..|| .+|.+||..|++||..+++.=|.-
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 3699999999999999999 699999999999999999988753
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.20 E-value=0.018 Score=56.58 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
..||.||-+.+.+++..||. +|.+||..|++||..+++.=|..
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 47999999999999999996 89999999999999999988753
No 40
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.02 E-value=0.004 Score=71.97 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHhcccHHHHHHHHHhccc
Q 044351 42 PQWSKGELQRFYEAYRNYGKDWKKVAAQVRNRSAEMVEALYNMNRA 87 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~GkdWkkva~~v~~Rs~~mV~aly~~~r~ 87 (1172)
-.||.+|...|.++|..|||+|.+|+..|++||+.++-..|.+.|.
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKK 235 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 235 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccc
Confidence 4899999999999999999999999999999999999999988775
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=94.77 E-value=0.033 Score=50.92 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHH----HhcccHHHHHHHHHhccccccc
Q 044351 43 QWSKGELQRFYEAYRNYGK-DWKKVAAQ----VRNRSAEMVEALYNMNRAYLSL 91 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk-dWkkva~~----v~~Rs~~mV~aly~~~r~ylsl 91 (1172)
.||.||-+...+++.+||. .|.+|+.. +.+||..+++.=|...--+-+|
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 5999999999999999999 99999996 8899999999877654433344
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.48 E-value=0.029 Score=57.06 Aligned_cols=42 Identities=21% Similarity=0.518 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhC---cCHHHHHHH--HhcccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYG---KDWKKVAAQ--VRNRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~G---kdWkkva~~--v~~Rs~~mV~aly~~ 84 (1172)
-||+.|..+||.||.+|| ..|+.|++. +..+|.+.|+.+|..
T Consensus 9 ~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~ 55 (211)
T 4b4c_A 9 GFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL 55 (211)
T ss_dssp CSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 599999999999999999 479999976 559999999998764
No 43
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.02 E-value=0.07 Score=47.10 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcC---HHHHHHHHh--cccHHHHHHHHHhccccc
Q 044351 42 PQWSKGELQRFYEAYRNYGKD---WKKVAAQVR--NRSAEMVEALYNMNRAYL 89 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gkd---Wkkva~~v~--~Rs~~mV~aly~~~r~yl 89 (1172)
=+||.|.|++|.+|+...|.+ ||+|...+. +.|.++|.+=--+.|.||
T Consensus 8 ~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 379999999999999999987 899999877 679999999888877776
No 44
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.91 E-value=0.063 Score=59.12 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=44.7
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHhcccHHHHHHHHHh
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGK-DWKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~~Rs~~mV~aly~~ 84 (1172)
|-+|..-==+-||+.+...|..|.-+||. +|.+||+.|.++|.+.|++.|..
T Consensus 102 Ke~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~v 154 (304)
T 1ofc_X 102 KENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV 154 (304)
T ss_dssp HHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 55555423356999999999999999999 99999999999999999998764
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=91.94 E-value=0.14 Score=48.75 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHH----hcccHHHHHHHHHhc
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQV----RNRSAEMVEALYNMN 85 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v----~~Rs~~mV~aly~~~ 85 (1172)
-.||.||-+...+++.+||. .|.+|+... .+||.-+++.=|...
T Consensus 14 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 47999999999999999999 999999966 799999998777543
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=91.50 E-value=0.21 Score=48.77 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHH----hcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQV----RNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v----~~Rs~~mV~aly~~ 84 (1172)
-.||.||-+...+++.+||. .|.+|+... .+||.-+++.=|..
T Consensus 32 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrn 79 (122)
T 2roh_A 32 RPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79 (122)
T ss_dssp CCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 47999999999999999998 999999986 69999998876643
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=91.45 E-value=0.23 Score=46.59 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=42.2
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHH-----hcccHHHHHHHHH
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQV-----RNRSAEMVEALYN 83 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v-----~~Rs~~mV~aly~ 83 (1172)
++-|.+ +.||+||-..-+++.++||--|-.|+.+. ..||++.+..=|.
T Consensus 25 ~~~L~~---~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY 77 (93)
T 3hm5_A 25 QLYLHD---DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp HHHTCB---TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHH
T ss_pred HHHcCC---CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHH
Confidence 455666 89999999999999999999999999999 4899999987553
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=90.36 E-value=0.26 Score=48.11 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc-CHHHHHHHH----hcccHHHHHHHHHhccccccc
Q 044351 42 PQWSKGELQRFYEAYRNYGK-DWKKVAAQV----RNRSAEMVEALYNMNRAYLSL 91 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk-dWkkva~~v----~~Rs~~mV~aly~~~r~ylsl 91 (1172)
-.||.||-+...+++.+||. .|.+|+... .+||.-+++.=|...--+-++
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 37999999999999999999 999999996 799999998877544433344
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.22 E-value=0.57 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhCc---CHHHHHHH--HhcccHHHHHHHHHh
Q 044351 43 QWSKGELQRFYEAYRNYGK---DWKKVAAQ--VRNRSAEMVEALYNM 84 (1172)
Q Consensus 43 ~WSkeEl~~Fyea~r~~Gk---dWkkva~~--v~~Rs~~mV~aly~~ 84 (1172)
.||+.|+++||.+|.+||- -|+-|++. |.+++.+.|+.||+.
T Consensus 5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 4999999999999999995 68888654 459999999999874
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=86.56 E-value=0.39 Score=51.71 Aligned_cols=43 Identities=9% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcC------HHHHHHHHhcccHHHHHHHHHh
Q 044351 42 PQWSKGELQRFYEAYRNYGKD------WKKVAAQVRNRSAEMVEALYNM 84 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gkd------Wkkva~~v~~Rs~~mV~aly~~ 84 (1172)
-.||+||=+.-++++++||.. |..||..|.+||..+|+.=|..
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 479999999999999999985 9999999999999999998864
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=79.30 E-value=2.2 Score=38.17 Aligned_cols=53 Identities=17% Similarity=0.438 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCc----------CHHHHHHHHh----cccHHHHHHHH-HhcccccccCc
Q 044351 41 GPQWSKGELQRFYEAYRNYGK----------DWKKVAAQVR----NRSAEMVEALY-NMNRAYLSLPE 93 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gk----------dWkkva~~v~----~Rs~~mV~aly-~~~r~ylslpe 93 (1172)
++.|+.+|...|+++|+.+-. -|+.||+.|. +||..|.+.-+ ++.+.|-.+=+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999986433 6999999998 89999998765 67788877644
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=76.21 E-value=3.6 Score=38.78 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=41.0
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHh-----cccHHHHHHHHH
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVR-----NRSAEMVEALYN 83 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~-----~Rs~~mV~aly~ 83 (1172)
.+-|.| +-||+||-..-+++.++|+--|--|+.+-. .||+|.+.+=|.
T Consensus 25 ~~~L~~---~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY 77 (93)
T 4iej_A 25 QLYLHD---DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp HHHTCB---TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHH
T ss_pred HHHhCC---CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHH
Confidence 445555 789999999999999999999999999975 799988876553
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=71.14 E-value=3 Score=47.35 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=43.1
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHh-cccHHHHHHHHHh
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGK-DWKKVAAQVR-NRSAEMVEALYNM 84 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~Gk-dWkkva~~v~-~Rs~~mV~aly~~ 84 (1172)
|.+|..-==+-|++-+...|..|..+||+ +-..||+.|. +.|.+.|++.+..
T Consensus 115 Ke~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~v 168 (374)
T 2y9y_A 115 KADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKA 168 (374)
T ss_dssp HHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHH
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHH
Confidence 44444422346999999999999999999 7999999999 9999999987653
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=63.97 E-value=11 Score=35.77 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---CHHHHHHHHhcccHHHHHH
Q 044351 41 GPQWSKGELQRFYEAYRNYGK---DWKKVAAQVRNRSAEMVEA 80 (1172)
Q Consensus 41 gp~WSkeEl~~Fyea~r~~Gk---dWkkva~~v~~Rs~~mV~a 80 (1172)
--.|++||=+--+.++++-|- -|..||..|.+|+.++|+-
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~ 75 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSH 75 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHH
Confidence 346999999999999999987 9999999999999999974
No 55
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.83 E-value=11 Score=33.78 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~~p 767 (1172)
.|.|+.. -...|.++|..|+. .+|.|.|+-- -.+.|+-.+|-|+.+
T Consensus 15 ~clA~ws-Dg~~Y~A~I~~v~~~~~~~V~f~Dy--n~e~v~~~~lrplp~ 61 (74)
T 2equ_A 15 EVLARWT-DCRYYPAKIEAINKEGTFTVQFYDG--VIRCLKRMHIKAMPE 61 (74)
T ss_dssp EEEEECS-SSSEEEEEEEEESTTSSEEEEETTS--CEEEECGGGEECCCG
T ss_pred EEEEECC-CCCEEEEEEEEECCCCEEEEEEecC--CeEEecHHHCeeCCh
Confidence 7899987 34669999999998 7899999853 888888887776643
No 56
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=58.13 E-value=19 Score=30.32 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=36.4
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPSN 766 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~~ 766 (1172)
.|.|....-...|.++|+.++. ..|.|.|. +.| .+.|+=.++.|+.
T Consensus 9 ~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~--DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 9 KCSAIWSEDGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSPI 57 (59)
T ss_dssp EEEEECTTTSCEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGCBCTT
T ss_pred EEEEEECCCCCEEEEEEEEEcCCCCEEEEEEE--cCCCEEEEcHHHeeCCC
Confidence 6788776445679999999996 79999996 556 7888877777764
No 57
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=55.65 E-value=18 Score=33.34 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=38.0
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~~p 767 (1172)
.|+|+...-...|.++|..++. ..|.|.|. +.| .+.|+=.+|.|+.+
T Consensus 16 ~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fi--DYGN~E~V~~~~Lrp~~~ 65 (88)
T 1g5v_A 16 KCSAIWSEDGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSPIC 65 (88)
T ss_dssp EEEEECTTTCCEEEEEEEEEETTTTEEEEEET--TTCCEEEEEGGGCBCCC-
T ss_pred EEEEEECCCCCEEEEEEEEecCCCCEEEEEEe--cCCCEEEEcHHHcccCCh
Confidence 6888876545679999999997 79999996 666 88898888888643
No 58
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=54.29 E-value=3.7 Score=39.26 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=36.8
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHh---------cccHHHHHHHHHhcccccccCcccchhhhHHH
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGKDWKKVAAQVR---------NRSAEMVEALYNMNRAYLSLPEGTASVVGLIA 103 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~GkdWkkva~~v~---------~Rs~~mV~aly~~~r~ylslpeg~as~~g~~a 103 (1172)
+|||+++|.|+ +..|+||+.+|..++ .+...-|.+|.+.-.+- | .|++.-|++
T Consensus 12 R~kL~~~LDp~-------------~~~g~dWr~LA~~Lg~~~~~I~~fe~~~sPT~~lL~~W~~r---~--~aTVg~L~~ 73 (110)
T 3mop_A 12 RRRLSLFLNVR-------------TQVAADWTALAEEMDFEYLEIRQLETQADPTGRLLDAWQGR---P--GASVGRLLE 73 (110)
T ss_dssp HHHHHHHHTSC-------------CSSSCCHHHHHTTTTCCHHHHHHHTSSSSHHHHHHHHHHSS---S--SCSHHHHHH
T ss_pred HHHHHHHcCCC-------------CCccccHHHHHHHcCCCHHHHHHHhCCCCcHHHHHHHHhcC---C--CCcHHHHHH
Confidence 78999999999 468999999999876 22223344444432221 3 377777777
Q ss_pred hh
Q 044351 104 MM 105 (1172)
Q Consensus 104 ~m 105 (1172)
++
T Consensus 74 ~L 75 (110)
T 3mop_A 74 LL 75 (110)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 59
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=53.04 E-value=22 Score=30.53 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=37.3
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~~p 767 (1172)
.|+|+...-...|.++|..++. ..|.|.|. +.| .+.|+=.++.|+++
T Consensus 14 ~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fv--dYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 14 KCMAVWSEDGQCYEAEIEEIDEENGTAAITFA--GYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp EEEEECTTTSSEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGEECCSC
T ss_pred EEEEEECCCCCEEEEEEEEEcCCCCEEEEEEE--ecCCEEEEeHHHcEeCCC
Confidence 6788876545679999999997 68999999 656 78888888877653
No 60
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.53 E-value=14 Score=32.34 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPE 751 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpe 751 (1172)
.|+|+... ...|-|+|..|+. .+|.|+|+-..
T Consensus 9 dVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s 42 (58)
T 4hcz_A 9 DVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDS 42 (58)
T ss_dssp EEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCC
Confidence 57887655 3458999999998 48999998654
No 61
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=42.58 E-value=41 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=37.7
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCCeeeeccCcccCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELGVEFVMDIDSMPSN 766 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLGv~~VpD~dvmp~~ 766 (1172)
.|.|+-|.....|.++|..+|. .-|.|.|-. =.++.++--||-|++
T Consensus 15 ~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKd--gT~e~L~~kDIkp~~ 62 (66)
T 2l8d_A 15 VVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKD--GTELALKESDIRLQS 62 (66)
T ss_dssp EEEEECTTSSCEEEEEEEEEETTTTEEEEEETT--SCEEEEEGGGEECSS
T ss_pred EEEEEcCCCccceEEEEEEeccCCceEEEEecC--CCEEeechhccccch
Confidence 7999999999999999999997 579999986 236667766666653
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=48.32 E-value=5.3 Score=36.05 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc---CHHHHHHHHhcccHHHHHH
Q 044351 42 PQWSKGELQRFYEAYRNYGK---DWKKVAAQVRNRSAEMVEA 80 (1172)
Q Consensus 42 p~WSkeEl~~Fyea~r~~Gk---dWkkva~~v~~Rs~~mV~a 80 (1172)
-.||.||=+--+.++++-|- -|..||..+ +||.++|.-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~ 55 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSE 55 (70)
Confidence 36999999999999999998 999999999 999999964
No 63
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=41.85 E-value=21 Score=35.21 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=34.9
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCCCCCCCchH
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPSNPLDNMPE 773 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~~p~e~~P~ 773 (1172)
+|+|+...-...|.|+|..+-. +.|+|.||-.. ...|.--+|+- ++.||+
T Consensus 10 rV~AkWsdn~~yYpG~V~~~~~~~ky~V~FdDg~--~~~v~~k~iiv---~d~ip~ 60 (123)
T 2g3r_A 10 RVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGY--ECDVLGKDILL---CDPIPL 60 (123)
T ss_dssp EEEEECTTTCCEEEEEEEEEEETTEEEEEETTSC--EEEEEGGGEEC---CSSCCT
T ss_pred EEEEEeccCCcCcccEEEEeccCCeEEEEEcCCC--eeEeecceEEE---ecccCC
Confidence 8999988655799999988544 78999999754 23343444443 566664
No 64
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=39.96 E-value=24 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCc-cCceEEEEeC--CceEEEecCC
Q 044351 719 RVIAIHPKTREL-HDGSVLTIDH--DKCRVQFDRP 750 (1172)
Q Consensus 719 kViA~hp~~r~L-~dG~Vlavd~--~~YrV~FDrp 750 (1172)
-|.|+. ++++ |.|+|..|+. .+|.|+|.-.
T Consensus 19 dVLA~w--tDGl~Y~gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 19 DVLARW--SDGLFYLGTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEC--TTSCEEEEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEE--ccCcEEEeEEEEEccCCcEEEEEEccC
Confidence 578877 5655 8999999997 6999999753
No 65
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=38.31 E-value=26 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~~p 767 (1172)
+|.|+- .-...|.++|.+|+. ..|.|+|+- =-+++|.-.+|-|+..
T Consensus 27 ~VlArW-~D~~yYPAkI~sV~~~~~YtV~F~D--G~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 27 QVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKAFSK 73 (85)
T ss_dssp EEEEEC-TTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEECC-
T ss_pred EEEEEe-CCCCEeeEEEEEECCCCeEEEEEeC--CCeEEecHHHcccCCh
Confidence 999988 434679999999998 689999986 2366666666666543
No 66
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=36.72 E-value=21 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCCccCceEEEEeC---CceEEEecCCC
Q 044351 718 SRVIAIHPKTRELHDGSVLTIDH---DKCRVQFDRPE 751 (1172)
Q Consensus 718 ~kViA~hp~~r~L~dG~Vlavd~---~~YrV~FDrpe 751 (1172)
.+|+|+.|.|--+|.++|.+.-. ..|+|.||-.+
T Consensus 121 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde 157 (180)
T 3mea_A 121 QLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTS 157 (180)
T ss_dssp CEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTT
T ss_pred CEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCC
Confidence 39999999999999999999754 58999999765
No 67
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=36.44 E-value=41 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=34.0
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~~p 767 (1172)
+|+|+- .-...|.|+|.+|+. ..|.|+|+- =-+++|.-.+|-|+..
T Consensus 12 ~vmArW-~D~~yYpA~I~si~~~~~Y~V~F~d--G~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 12 QVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKAFSK 58 (67)
T ss_dssp EEEEEC-TTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEECC-
T ss_pred EEEEEc-CCCCEeeEEEEEECCCCeEEEEEeC--CceEEEeHHHcccCCc
Confidence 789987 334679999999998 589999996 2366666666666544
No 68
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=33.25 E-value=63 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCCeeeeccCcccC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELGVEFVMDIDSMP 764 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLGv~~VpD~dvmp 764 (1172)
.|.|+-|.....|.++|..+|. .-|.|.|-. =.++.++--|+-|
T Consensus 18 ~VmaRW~Gd~~yYparItSits~~~~Y~VkfKd--gT~e~L~~kDIKp 63 (68)
T 2dig_A 18 VVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKD--GTELELKENDIKS 63 (68)
T ss_dssp EEEEECTTTCCEEEEEEEEEETTTTEEEEECTT--SCEEEEETTTEEC
T ss_pred EEEEEccCCccceEEEEEEeccCCceEEEEecC--CCEEEechhcccc
Confidence 7999999888999999999996 579999987 2355555444433
No 69
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=33.05 E-value=56 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPSNP 767 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~~p 767 (1172)
.|+|....-...|.++|+.++. ..|.|.|. +.| ++.|+=.++.|+.+
T Consensus 15 ~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fi--DYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 15 ECFALYWEDNKFYRAEVEALHSSGMTAVVKFT--DYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp EEEEECTTTCCEEEEEEEEECSSSSEEEEEET--TTTEEEEEEGGGEEECCC
T ss_pred EEEEEECCCCCEEEEEEEEEeCCCCEEEEEEE--cCCCeEEEcHHHeEeCCH
Confidence 5778765444679999999986 78999996 667 77777777776644
No 70
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=32.09 E-value=35 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCccCceEEEEeCCceEEEecCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDHDKCRVQFDRPE 751 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~~~YrV~FDrpe 751 (1172)
.|+++... ..+|-|+|+.....+|.|+|+-..
T Consensus 21 DVL~rw~D-G~fYLGtIVd~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 21 DVFIKCND-GRFYLGTIIDQTSDQYLIRFDDQS 52 (69)
T ss_dssp EEEEECTT-SCEEEEEEEEECSSCEEEEETTCC
T ss_pred eEEEEecC-CCEEEEEEEecCCceEEEEecCCc
Confidence 57777544 455889997666799999998653
No 71
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=31.91 E-value=21 Score=28.17 Aligned_cols=13 Identities=54% Similarity=0.818 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhC
Q 044351 48 ELQRFYEAYRNYG 60 (1172)
Q Consensus 48 El~~Fyea~r~~G 60 (1172)
=|||++||||.|.
T Consensus 18 FlerL~eayR~yT 30 (32)
T 1bm4_A 18 FLERLKEAYRRYT 30 (32)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcC
Confidence 3899999999984
No 72
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.74 E-value=28 Score=32.10 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCc-cCceEEEEeC--CceEEEecCCCCCeeeecc
Q 044351 719 RVIAIHPKTREL-HDGSVLTIDH--DKCRVQFDRPELGVEFVMD 759 (1172)
Q Consensus 719 kViA~hp~~r~L-~dG~Vlavd~--~~YrV~FDrpeLGv~~VpD 759 (1172)
-|+|++. +|+ |-|+|..||. .+|.|+|+-..---....|
T Consensus 32 DVLarws--DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kd 73 (79)
T 2m0o_A 32 DVLARWT--DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKD 73 (79)
T ss_dssp EEEBCCT--TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEec--CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeec
Confidence 4666443 344 7899999997 6899999865433333333
No 73
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=37.27 E-value=10 Score=34.87 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcccCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDSMPS 765 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dvmp~ 765 (1172)
+|.|+.. -...|.++|..|+. ..|.|.|+- + -.+.|+-.+|-|+
T Consensus 12 ~clAkws-Dg~wY~A~I~~v~~~~~y~V~F~D-G-n~E~V~~s~LrPl 56 (81)
T 2ldm_A 12 QVLASWS-DSRFYPAKVTAVNKDGTYTVKFYD-G-VVQTVKHIHVKAF 56 (81)
Confidence 6788766 45789999999976 689999985 2 4666665555554
No 74
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.35 E-value=43 Score=30.20 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRP 750 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrp 750 (1172)
-|+|++-. .-+|-|+|..|+. .+|.|+|.-.
T Consensus 15 dVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 15 DVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEECTT-SSEEEEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEecC-CcEEEeEEEEEecCCcEEEEEEccC
Confidence 58887755 2448899999996 6899999854
No 75
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.44 E-value=21 Score=33.80 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=26.5
Q ss_pred cchHHHHHHhcCCCCCCccchhhHHHHHhhc
Q 044351 664 NREFVEYLNHVGLGHIPRLTRVEWGVIRSSL 694 (1172)
Q Consensus 664 ~nEF~~~L~~~~l~~~~~LtR~EW~~IRr~m 694 (1172)
..++..|..+.|-..++.=+-.=|..||..|
T Consensus 60 G~~L~~~~~~~g~~~ip~~~f~~W~lIrd~L 90 (94)
T 1bax_A 60 GDCFQDYYNTFGPEKVPVTAFSYWNLIKELI 90 (94)
T ss_pred HHHHHHHHHHcCCCcCCcchHHHHHHHHHHh
Confidence 3678888888887888999999999999876
No 76
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=26.50 E-value=34 Score=34.94 Aligned_cols=44 Identities=20% Similarity=0.090 Sum_probs=33.7
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCCCCCeeeeccCcc
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRPELGVEFVMDIDS 762 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrpeLGv~~VpD~dv 762 (1172)
+|+|+-...+..|.|+|..+-. +.|.|.||-..-.+...+|+-|
T Consensus 14 rVfArWsd~~yyYpG~V~~~~~~~~Y~V~FdDG~~k~v~~~divv 58 (156)
T 1ssf_A 14 RVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILL 58 (156)
T ss_dssp EEEECSSCSSEEEEEEEEECCTTTEEEEECTTSCEEEEETTTEEE
T ss_pred EEEEEcCCCCcccccEEEEeccCCEEEEEEcCCCeeEeeccceEE
Confidence 8999888777778999998765 6799999977655555455544
No 77
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=26.41 E-value=66 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=31.7
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPS 765 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~ 765 (1172)
.+.|....-..-|.++|+.++. ..|.|.|. +.| .+.|+=.++.|+
T Consensus 7 ~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fv--DYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 7 ECFALYWEDNKFYRAEVEALHSSGMTAVVKFI--DYGNYEEVLLSNIKPI 54 (54)
T ss_dssp EEEEEETTTTEEEEEEEEEC--CCSEEEEEET--TTCCEEEEEGGGEECC
T ss_pred EEEEEECCCCCEEEEEEEEEeCCCCEEEEEEE--ccCCeEEEeHHHEEEC
Confidence 4677765445679999999975 57999998 555 677776666553
No 78
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=25.44 E-value=43 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCccCceEEEEeC-CceEEEecCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH-DKCRVQFDRP 750 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~-~~YrV~FDrp 750 (1172)
+|||.|+. ...|.|+|+.+.. ..|.|.|+-.
T Consensus 11 ~V~akh~n-gryy~~~V~~~~~~~~y~V~F~Dg 42 (118)
T 2qqr_A 11 KVISKHKN-GRFYQCEVVRLTTETFYEVNFDDG 42 (118)
T ss_dssp EEEEECTT-SSEEEEEEEEEEEEEEEEEEETTS
T ss_pred EEEEECCC-CCEEeEEEEEEeeEEEEEEEcCCC
Confidence 89999985 5678999999887 6899999954
No 79
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=22.22 E-value=1e+02 Score=27.56 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCccCceEEEEeC--CceEEEecCCCCC-eeeeccCcccCCC
Q 044351 719 RVIAIHPKTRELHDGSVLTIDH--DKCRVQFDRPELG-VEFVMDIDSMPSN 766 (1172)
Q Consensus 719 kViA~hp~~r~L~dG~Vlavd~--~~YrV~FDrpeLG-v~~VpD~dvmp~~ 766 (1172)
.|+|....-...|.++|+.++. ..|.|.|. +.| ++.|+=.++.|+.
T Consensus 23 ~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fv--DYGN~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 23 ECFALYWEDNKFYRAEVEALHSSGMTAVVKFI--DYGNYEEVLLSNIKPIQ 71 (77)
T ss_dssp EEEEEETTTTEEEEEEEEEECTTSSEEEEEET--TTCCEEEEEGGGEECC-
T ss_pred EEEEEECCCCCEEEEEEEEEeCCCCEEEEEEE--cCCCeEEEeHHHeEECC
Confidence 7888875545679999999986 57999998 444 7777777776654
No 80
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.61 E-value=1.9e+02 Score=26.40 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=46.8
Q ss_pred hhhhccccCCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHh-----cccHHHHHHHHHhcccccccCcccchhhhH
Q 044351 33 KKKLSDKLGPQWSKGELQRFYEAYRNYGK------DWKKVAAQVR-----NRSAEMVEALYNMNRAYLSLPEGTASVVGL 101 (1172)
Q Consensus 33 KrKlsD~lgp~WSkeEl~~Fyea~r~~Gk------dWkkva~~v~-----~Rs~~mV~aly~~~r~ylslpeg~as~~g~ 101 (1172)
.|.++. .....|.++++.+.++|+.|-. ++.-+...++ .=+.+.+..|+... .|.-+-.-|
T Consensus 9 ~~~~~~-~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-------dg~i~~~eF 80 (166)
T 2mys_B 9 AEGSSN-VFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-------SGPINFTVF 80 (166)
T ss_pred cccCch-hhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-------CCCcCHHHH
Confidence 455554 4457788999999998888743 4555555554 34677888888754 466666778
Q ss_pred HHhhcccc
Q 044351 102 IAMMTDHY 109 (1172)
Q Consensus 102 ~a~mtdhy 109 (1172)
+++|..++
T Consensus 81 ~~~~~~~~ 88 (166)
T 2mys_B 81 LTMFGEKL 88 (166)
T ss_pred HHHHHHHh
Confidence 88887653
Done!