BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044352
         (544 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
           Acyl Adduct
 pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
           Inhibited By Paraoxon
          Length = 338

 Score = 32.0 bits (71), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 329 YSKCGSLKDARTLFEITRIKNVASWNAMI-GCYGKHGMVDSSIELFERMLEEGM 381
           +  C    ++  L+   +I+++  W  M+ GC+G   M+D  +EL ER+ ++G+
Sbjct: 243 HEYCNPTAESEPLYSFDKIRSLG-WRVMVVGCHGD-PMIDRQMELAERLEKKGV 294


>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
 pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
          Length = 328

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFA 260
           RGDS  A  F    T   FV  +V+W +M  G A
Sbjct: 272 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEA 305


>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
           Masp-2
          Length = 403

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFA 260
           RGDS  A  F    T   FV  +V+W +M  G A
Sbjct: 347 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEA 380


>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
           Inhibitor Developed By Directed Evolution On Sgci
           Scaffold
          Length = 242

 Score = 28.9 bits (63), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFA 260
           RGDS  A  F    T   FV  +V+W +M  G A
Sbjct: 186 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEA 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,311,375
Number of Sequences: 62578
Number of extensions: 612535
Number of successful extensions: 1810
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 9
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)