Query 044352
Match_columns 544
No_of_seqs 665 out of 3167
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 02:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.1E-76 1.5E-80 610.6 60.0 530 11-542 150-749 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-68 2.3E-73 543.9 53.8 489 45-542 86-586 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 7.4E-67 1.6E-71 543.2 57.1 507 11-522 84-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.9E-65 8.5E-70 519.5 63.0 509 11-523 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.9E-60 1.5E-64 481.2 57.2 474 43-522 367-882 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 9.8E-58 2.1E-62 463.8 46.1 428 10-448 120-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-36 8.3E-41 321.2 55.6 498 10-519 360-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-35 3.2E-40 316.6 58.2 498 7-515 391-899 (899)
9 PRK11447 cellulose synthase su 100.0 3.7E-27 8E-32 251.9 59.9 489 16-514 31-664 (1157)
10 PRK11447 cellulose synthase su 100.0 5.9E-27 1.3E-31 250.3 58.4 487 17-515 116-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.4E-25 3E-30 228.9 53.4 494 6-517 71-707 (987)
12 KOG4626 O-linked N-acetylgluco 100.0 2.4E-25 5.3E-30 202.3 34.2 464 28-505 30-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 3.8E-22 8.3E-27 203.9 51.7 490 6-518 105-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.4E-23 3.1E-28 190.9 33.5 425 81-517 51-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-22 4.9E-27 202.3 44.5 422 81-517 130-572 (615)
16 KOG2002 TPR-containing nuclear 99.9 2.6E-21 5.6E-26 185.4 40.9 489 21-519 207-801 (1018)
17 KOG2002 TPR-containing nuclear 99.9 3.2E-21 6.9E-26 184.8 41.4 503 7-517 158-746 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.6E-25 189.8 45.1 256 227-488 307-577 (615)
19 PRK10049 pgaA outer membrane p 99.9 2.5E-20 5.3E-25 190.9 44.3 403 76-517 13-457 (765)
20 PRK11788 tetratricopeptide rep 99.9 2.2E-21 4.7E-26 185.7 32.8 305 188-524 44-355 (389)
21 PRK10049 pgaA outer membrane p 99.9 1.5E-19 3.2E-24 185.2 47.2 412 34-491 3-465 (765)
22 PRK15174 Vi polysaccharide exp 99.9 3E-20 6.5E-25 186.1 41.0 312 187-517 84-404 (656)
23 PRK15174 Vi polysaccharide exp 99.9 4.2E-20 9E-25 185.1 41.5 353 159-519 16-384 (656)
24 KOG0495 HAT repeat protein [RN 99.9 4.3E-18 9.3E-23 156.5 49.0 507 3-530 370-892 (913)
25 PRK11788 tetratricopeptide rep 99.9 2E-20 4.4E-25 179.0 32.0 299 16-320 38-354 (389)
26 PRK14574 hmsH outer membrane p 99.9 2.9E-18 6.2E-23 172.2 47.9 431 54-490 41-521 (822)
27 PRK14574 hmsH outer membrane p 99.9 6.7E-18 1.4E-22 169.6 48.6 433 77-517 33-514 (822)
28 KOG2003 TPR repeat-containing 99.9 5.1E-18 1.1E-22 149.5 35.6 447 49-502 203-709 (840)
29 KOG2076 RNA polymerase III tra 99.9 2.1E-16 4.5E-21 151.2 46.8 369 6-377 130-553 (895)
30 KOG2076 RNA polymerase III tra 99.8 2.3E-15 5.1E-20 144.1 45.3 512 4-517 164-850 (895)
31 KOG1915 Cell cycle control pro 99.8 3.7E-15 8.1E-20 132.4 42.7 457 15-482 75-585 (677)
32 KOG1173 Anaphase-promoting com 99.8 8.2E-17 1.8E-21 146.1 31.7 491 9-516 12-518 (611)
33 KOG0495 HAT repeat protein [RN 99.8 2E-14 4.4E-19 132.8 45.4 465 18-497 411-895 (913)
34 KOG2003 TPR repeat-containing 99.8 9.1E-16 2E-20 135.5 32.2 432 81-516 204-689 (840)
35 KOG4422 Uncharacterized conser 99.8 3.1E-14 6.7E-19 125.1 39.5 424 78-519 116-593 (625)
36 KOG4422 Uncharacterized conser 99.8 6.9E-14 1.5E-18 122.9 41.6 423 10-483 113-591 (625)
37 KOG0547 Translocase of outer m 99.8 8.1E-16 1.8E-20 137.1 30.0 405 81-515 118-565 (606)
38 KOG1915 Cell cycle control pro 99.8 2.3E-13 4.9E-18 121.2 43.7 468 36-516 62-585 (677)
39 PF13429 TPR_15: Tetratricopep 99.8 3E-18 6.5E-23 155.1 11.4 257 255-515 14-276 (280)
40 KOG1155 Anaphase-promoting com 99.7 2.4E-13 5.2E-18 120.8 37.2 361 144-516 160-536 (559)
41 PRK10747 putative protoheme IX 99.7 5.2E-14 1.1E-18 133.3 31.2 288 192-515 97-389 (398)
42 PRK10747 putative protoheme IX 99.7 2.5E-13 5.3E-18 128.7 34.9 287 160-483 96-391 (398)
43 KOG1155 Anaphase-promoting com 99.7 3.3E-13 7.2E-18 120.0 31.9 327 177-515 162-494 (559)
44 KOG1173 Anaphase-promoting com 99.7 4.4E-13 9.6E-18 122.2 32.6 471 12-499 48-535 (611)
45 TIGR00540 hemY_coli hemY prote 99.7 5.6E-13 1.2E-17 127.0 34.7 284 191-514 96-397 (409)
46 PF13429 TPR_15: Tetratricopep 99.7 6.1E-16 1.3E-20 140.1 11.8 256 219-481 13-276 (280)
47 KOG0547 Translocase of outer m 99.7 9.9E-13 2.1E-17 117.8 31.3 218 260-484 337-568 (606)
48 TIGR00540 hemY_coli hemY prote 99.7 6.6E-13 1.4E-17 126.6 32.8 213 325-538 159-386 (409)
49 KOG4162 Predicted calmodulin-b 99.7 2E-11 4.3E-16 115.8 40.9 382 143-528 318-794 (799)
50 KOG1126 DNA-binding cell divis 99.6 4.4E-14 9.5E-19 131.4 21.8 281 228-518 333-622 (638)
51 KOG1126 DNA-binding cell divis 99.6 8E-14 1.7E-18 129.7 23.2 286 193-488 333-626 (638)
52 KOG2047 mRNA splicing factor [ 99.6 2.2E-10 4.7E-15 106.5 43.2 484 13-502 102-709 (835)
53 KOG3785 Uncharacterized conser 99.6 9.6E-12 2.1E-16 107.0 31.7 443 20-490 29-497 (557)
54 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.2E-16 108.0 32.9 282 192-481 97-389 (400)
55 COG2956 Predicted N-acetylgluc 99.6 3.4E-12 7.3E-17 108.5 27.4 275 15-296 38-327 (389)
56 COG2956 Predicted N-acetylgluc 99.6 5.3E-12 1.1E-16 107.3 28.1 296 192-522 48-353 (389)
57 KOG1174 Anaphase-promoting com 99.6 1.3E-10 2.8E-15 102.3 37.2 294 192-493 209-511 (564)
58 KOG2376 Signal recognition par 99.6 1.5E-10 3.4E-15 106.5 38.5 456 15-512 14-516 (652)
59 COG3071 HemY Uncharacterized e 99.6 8.5E-12 1.8E-16 109.4 29.0 283 226-517 96-391 (400)
60 KOG2047 mRNA splicing factor [ 99.6 3.6E-09 7.8E-14 98.6 45.7 495 7-515 21-614 (835)
61 KOG1156 N-terminal acetyltrans 99.5 1.7E-09 3.8E-14 100.9 40.6 451 14-481 8-510 (700)
62 TIGR02521 type_IV_pilW type IV 99.5 6E-12 1.3E-16 111.4 23.6 198 318-516 30-232 (234)
63 KOG1156 N-terminal acetyltrans 99.5 4.9E-10 1.1E-14 104.4 34.2 437 91-536 20-496 (700)
64 KOG4318 Bicoid mRNA stability 99.5 8.3E-10 1.8E-14 106.4 36.2 483 2-520 17-598 (1088)
65 KOG1840 Kinesin light chain [C 99.5 3.1E-11 6.7E-16 113.8 25.7 127 388-514 328-477 (508)
66 KOG3785 Uncharacterized conser 99.5 2.4E-09 5.2E-14 92.6 34.4 454 56-531 31-502 (557)
67 COG3063 PilF Tfp pilus assembl 99.5 2.9E-12 6.3E-17 103.9 15.8 175 352-530 37-215 (250)
68 KOG4162 Predicted calmodulin-b 99.5 2.8E-09 6E-14 101.6 38.0 407 76-488 321-789 (799)
69 KOG1129 TPR repeat-containing 99.5 5.7E-12 1.2E-16 107.2 17.1 223 289-516 228-458 (478)
70 PF12569 NARP1: NMDA receptor- 99.4 1.8E-09 3.8E-14 103.5 35.1 125 218-345 198-331 (517)
71 PRK12370 invasion protein regu 99.4 6.3E-11 1.4E-15 117.5 26.4 243 62-313 276-535 (553)
72 PRK12370 invasion protein regu 99.4 2.6E-10 5.7E-15 113.1 28.6 262 247-517 254-536 (553)
73 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.4E-16 105.5 14.6 235 253-492 227-468 (478)
74 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.7E-13 90.1 33.7 300 211-517 191-501 (564)
75 KOG2376 Signal recognition par 99.4 1.5E-08 3.2E-13 93.8 35.2 416 83-517 17-488 (652)
76 KOG0548 Molecular co-chaperone 99.4 6.4E-09 1.4E-13 95.2 32.1 432 19-500 8-473 (539)
77 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-10 2.7E-15 105.5 21.6 231 258-496 35-280 (296)
78 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.2E-15 103.5 20.6 192 49-242 33-231 (234)
79 KOG1127 TPR repeat-containing 99.4 1E-08 2.2E-13 100.3 34.5 131 384-515 966-1103(1238)
80 KOG4340 Uncharacterized conser 99.3 6.2E-09 1.3E-13 88.0 27.5 316 52-376 15-372 (459)
81 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3E-13 97.4 33.2 412 88-512 14-516 (517)
82 KOG4318 Bicoid mRNA stability 99.3 9.8E-10 2.1E-14 106.0 24.8 360 99-502 11-394 (1088)
83 PRK11189 lipoprotein NlpI; Pro 99.3 2.2E-09 4.7E-14 97.5 25.2 214 298-518 40-267 (296)
84 KOG4340 Uncharacterized conser 99.3 2.1E-08 4.5E-13 84.8 27.4 416 81-517 13-444 (459)
85 KOG3617 WD40 and TPR repeat-co 99.3 2.4E-07 5.1E-12 89.2 37.1 349 23-411 738-1171(1416)
86 KOG0624 dsRNA-activated protei 99.3 4.7E-08 1E-12 84.4 29.5 313 152-493 42-381 (504)
87 KOG0548 Molecular co-chaperone 99.3 1.7E-08 3.8E-13 92.4 28.0 414 54-517 9-456 (539)
88 KOG0985 Vesicle coat protein c 99.3 1.2E-06 2.5E-11 86.5 41.6 142 350-512 1104-1245(1666)
89 KOG3616 Selective LIM binding 99.2 3.1E-07 6.6E-12 87.4 35.5 423 52-530 562-1035(1636)
90 COG3063 PilF Tfp pilus assembl 99.2 4.1E-09 8.9E-14 85.9 19.9 193 321-514 37-234 (250)
91 PF04733 Coatomer_E: Coatomer 99.2 2.1E-09 4.6E-14 95.9 20.2 254 224-489 11-272 (290)
92 KOG0624 dsRNA-activated protei 99.2 1.9E-07 4E-12 80.8 29.8 198 15-215 40-257 (504)
93 KOG1840 Kinesin light chain [C 99.2 1.6E-09 3.6E-14 102.3 19.2 234 43-276 195-477 (508)
94 PF13041 PPR_2: PPR repeat fam 99.2 6.1E-11 1.3E-15 74.9 6.4 45 214-258 3-47 (50)
95 PF13041 PPR_2: PPR repeat fam 99.2 6.3E-11 1.4E-15 74.8 6.4 50 76-125 1-50 (50)
96 KOG3616 Selective LIM binding 99.2 1.9E-07 4.2E-12 88.8 31.5 52 21-73 452-503 (1636)
97 cd05804 StaR_like StaR_like; a 99.2 7.8E-08 1.7E-12 90.9 29.6 195 9-207 2-214 (355)
98 KOG1125 TPR repeat-containing 99.2 2.6E-09 5.6E-14 98.6 17.2 219 294-515 295-526 (579)
99 PRK04841 transcriptional regul 99.1 7.3E-07 1.6E-11 95.6 38.0 330 188-517 383-761 (903)
100 PRK10370 formate-dependent nit 99.1 1.1E-08 2.4E-13 86.2 18.2 149 357-519 23-176 (198)
101 cd05804 StaR_like StaR_like; a 99.1 7.7E-07 1.7E-11 84.2 33.1 193 325-517 120-337 (355)
102 KOG3617 WD40 and TPR repeat-co 99.1 2.5E-06 5.5E-11 82.4 34.9 248 56-346 737-994 (1416)
103 KOG1127 TPR repeat-containing 99.1 1.2E-06 2.6E-11 86.4 32.8 125 13-141 492-658 (1238)
104 PF04733 Coatomer_E: Coatomer 99.0 4.3E-08 9.3E-13 87.6 20.0 246 22-277 10-264 (290)
105 TIGR03302 OM_YfiO outer membra 99.0 3.2E-08 6.9E-13 87.3 19.1 182 317-516 31-232 (235)
106 KOG0985 Vesicle coat protein c 99.0 3.1E-05 6.8E-10 76.9 39.7 350 49-442 986-1375(1666)
107 PRK15359 type III secretion sy 99.0 9.9E-09 2.1E-13 81.8 13.3 93 424-516 27-121 (144)
108 PRK04841 transcriptional regul 99.0 4E-06 8.6E-11 90.0 35.6 257 158-414 462-760 (903)
109 PRK15359 type III secretion sy 99.0 2.5E-08 5.4E-13 79.5 14.2 124 370-499 13-138 (144)
110 KOG1125 TPR repeat-containing 99.0 5.3E-08 1.1E-12 90.2 17.9 248 258-509 294-564 (579)
111 KOG1070 rRNA processing protei 99.0 1.3E-07 2.8E-12 96.1 21.8 201 316-520 1455-1667(1710)
112 KOG1914 mRNA cleavage and poly 98.9 5.2E-05 1.1E-09 70.3 35.4 433 3-438 10-527 (656)
113 PLN02789 farnesyltranstransfer 98.9 1.4E-06 3.1E-11 79.0 24.6 213 298-514 51-300 (320)
114 PRK15179 Vi polysaccharide bio 98.9 2.4E-07 5.1E-12 92.6 21.1 133 349-485 85-220 (694)
115 KOG2053 Mitochondrial inherita 98.9 0.00011 2.3E-09 72.5 42.0 218 24-244 20-256 (932)
116 KOG1128 Uncharacterized conser 98.9 4.8E-07 1E-11 86.3 21.3 212 288-517 402-617 (777)
117 KOG1128 Uncharacterized conser 98.9 5.2E-07 1.1E-11 86.1 20.3 188 315-517 394-583 (777)
118 PRK15363 pathogenicity island 98.8 4.1E-08 8.8E-13 76.5 10.7 98 420-517 34-133 (157)
119 COG5010 TadD Flp pilus assembl 98.8 8.4E-07 1.8E-11 74.4 18.7 156 354-512 70-227 (257)
120 TIGR03302 OM_YfiO outer membra 98.8 1.8E-07 4E-12 82.5 16.0 181 7-208 27-232 (235)
121 KOG3060 Uncharacterized conser 98.8 5.7E-07 1.2E-11 74.7 17.3 175 321-498 54-236 (289)
122 PLN02789 farnesyltranstransfer 98.8 4.8E-07 1.1E-11 82.0 18.5 187 328-517 46-251 (320)
123 PRK10370 formate-dependent nit 98.8 7.9E-07 1.7E-11 75.0 18.5 155 325-490 22-181 (198)
124 COG5010 TadD Flp pilus assembl 98.8 3.7E-07 8.1E-12 76.5 15.3 172 31-206 52-229 (257)
125 PRK14720 transcript cleavage f 98.8 2.7E-06 5.9E-11 86.0 23.8 241 8-295 26-268 (906)
126 TIGR02552 LcrH_SycD type III s 98.8 1.5E-07 3.3E-12 74.8 12.0 96 422-517 18-115 (135)
127 KOG3060 Uncharacterized conser 98.8 4E-06 8.8E-11 69.8 20.0 182 262-447 25-217 (289)
128 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.9E-10 67.3 22.9 114 327-447 116-233 (299)
129 KOG3081 Vesicle coat complex C 98.7 8.2E-06 1.8E-10 68.5 21.1 243 190-447 19-268 (299)
130 KOG1070 rRNA processing protei 98.7 6.2E-06 1.3E-10 84.4 24.2 226 281-507 1455-1691(1710)
131 COG4783 Putative Zn-dependent 98.7 1.2E-05 2.7E-10 73.6 23.9 118 394-513 315-434 (484)
132 PRK14720 transcript cleavage f 98.7 6E-06 1.3E-10 83.6 23.8 234 214-498 31-268 (906)
133 COG4783 Putative Zn-dependent 98.6 1E-05 2.2E-10 74.2 20.8 150 348-517 304-455 (484)
134 TIGR02552 LcrH_SycD type III s 98.6 1.3E-06 2.8E-11 69.4 13.5 116 372-491 5-123 (135)
135 PRK15179 Vi polysaccharide bio 98.6 3.2E-05 7E-10 77.7 24.2 127 318-447 85-214 (694)
136 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 52.9 4.2 32 244-275 2-33 (34)
137 PF09976 TPR_21: Tetratricopep 98.5 4.2E-06 9.1E-11 67.1 13.9 115 398-513 24-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.6E-06 5.6E-11 78.8 14.0 123 387-514 171-295 (395)
139 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 52.8 4.1 33 208-240 1-33 (34)
140 PF13414 TPR_11: TPR repeat; P 98.5 3.8E-07 8.3E-12 62.4 6.4 66 452-517 2-68 (69)
141 KOG1914 mRNA cleavage and poly 98.5 0.0014 3E-08 61.3 38.2 448 37-513 10-536 (656)
142 PF13432 TPR_16: Tetratricopep 98.4 8E-07 1.7E-11 59.9 6.2 59 459-517 3-61 (65)
143 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.7E-06 1E-10 64.5 11.4 95 423-517 4-106 (119)
144 cd00189 TPR Tetratricopeptide 98.4 2.8E-06 6.1E-11 62.8 9.8 95 423-517 2-98 (100)
145 PF09976 TPR_21: Tetratricopep 98.4 3.4E-05 7.3E-10 61.9 16.1 126 352-480 14-145 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.5E-10 73.6 15.6 127 319-448 169-295 (395)
147 KOG0553 TPR repeat-containing 98.4 4.3E-06 9.3E-11 71.7 10.3 108 395-504 91-200 (304)
148 PLN03088 SGT1, suppressor of 98.4 2E-06 4.3E-11 80.1 9.3 109 390-500 7-117 (356)
149 COG4235 Cytochrome c biogenesi 98.3 8.6E-06 1.9E-10 70.4 12.1 110 417-526 152-266 (287)
150 PF12895 Apc3: Anaphase-promot 98.3 4E-07 8.8E-12 65.1 3.2 78 434-512 2-83 (84)
151 KOG2053 Mitochondrial inherita 98.3 0.0048 1E-07 61.4 39.3 68 455-522 438-508 (932)
152 KOG0553 TPR repeat-containing 98.3 6.5E-06 1.4E-10 70.6 9.5 90 428-517 88-179 (304)
153 KOG0550 Molecular chaperone (D 98.2 2.9E-05 6.4E-10 69.4 13.4 273 220-519 55-353 (486)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.4E-05 5.3E-10 60.5 11.9 106 387-492 4-115 (119)
155 PLN03088 SGT1, suppressor of 98.2 2.3E-05 4.9E-10 73.1 13.5 90 356-448 8-97 (356)
156 COG4700 Uncharacterized protei 98.2 0.00038 8.1E-09 55.4 17.3 133 381-515 85-221 (251)
157 PRK02603 photosystem I assembl 98.2 2E-05 4.3E-10 65.4 11.2 97 421-517 35-150 (172)
158 KOG0550 Molecular chaperone (D 98.2 0.0012 2.6E-08 59.5 21.7 261 15-278 51-350 (486)
159 PF13371 TPR_9: Tetratricopept 98.1 8.3E-06 1.8E-10 56.5 6.5 58 461-518 3-60 (73)
160 PF14559 TPR_19: Tetratricopep 98.1 3.5E-06 7.6E-11 57.4 4.5 54 464-517 2-55 (68)
161 PRK15331 chaperone protein Sic 98.1 2.9E-05 6.2E-10 61.1 10.0 93 424-516 40-134 (165)
162 CHL00033 ycf3 photosystem I as 98.1 2.5E-05 5.5E-10 64.5 10.2 94 420-513 34-139 (168)
163 PF13432 TPR_16: Tetratricopep 98.1 6.3E-06 1.4E-10 55.5 5.3 61 427-487 3-65 (65)
164 PRK10153 DNA-binding transcrip 98.1 0.00028 6E-09 68.9 17.0 62 454-516 421-482 (517)
165 PF12895 Apc3: Anaphase-promot 98.0 2.3E-05 5.1E-10 55.9 7.0 80 399-478 3-83 (84)
166 cd00189 TPR Tetratricopeptide 98.0 6.6E-05 1.4E-09 55.2 9.9 94 389-484 4-99 (100)
167 PRK10153 DNA-binding transcrip 98.0 0.00033 7.2E-09 68.3 16.7 143 345-489 332-489 (517)
168 PRK02603 photosystem I assembl 98.0 0.00027 5.8E-09 58.6 14.0 117 350-486 35-153 (172)
169 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.7E-10 46.0 4.1 33 80-112 2-34 (35)
170 PF13414 TPR_11: TPR repeat; P 98.0 2.1E-05 4.6E-10 53.7 5.7 65 420-484 2-69 (69)
171 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.4E-10 45.6 4.1 33 181-213 2-34 (35)
172 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 44.9 4.3 33 79-111 2-34 (34)
173 PRK15363 pathogenicity island 97.9 4.4E-05 9.5E-10 59.8 7.4 93 49-142 37-132 (157)
174 KOG1538 Uncharacterized conser 97.9 0.0038 8.2E-08 59.7 21.0 85 387-481 749-845 (1081)
175 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.4E-10 44.8 4.2 33 250-282 2-34 (34)
176 PF14559 TPR_19: Tetratricopep 97.9 1.5E-05 3.4E-10 54.2 4.1 61 433-493 3-65 (68)
177 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.5E-10 45.3 2.8 34 475-508 1-34 (34)
178 PRK10803 tol-pal system protei 97.9 0.00012 2.7E-09 64.3 10.7 85 432-516 154-246 (263)
179 KOG1258 mRNA processing protei 97.9 0.025 5.4E-07 54.2 34.9 405 77-501 44-489 (577)
180 PF05843 Suf: Suppressor of fo 97.9 0.00053 1.2E-08 61.7 14.8 135 351-488 2-142 (280)
181 KOG2041 WD40 repeat protein [G 97.9 0.023 5.1E-07 55.1 25.6 61 352-412 1023-1084(1189)
182 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 7.3E-05 1.6E-09 69.0 8.9 67 450-516 72-141 (453)
183 PF12688 TPR_5: Tetratrico pep 97.9 0.00023 4.9E-09 53.9 10.1 86 427-512 7-100 (120)
184 PF13428 TPR_14: Tetratricopep 97.8 3.9E-05 8.4E-10 46.5 4.5 42 454-495 2-43 (44)
185 PF14938 SNAP: Soluble NSF att 97.8 0.0017 3.6E-08 58.8 16.8 93 392-484 121-227 (282)
186 PF10037 MRP-S27: Mitochondria 97.8 0.00042 9.2E-09 64.7 13.0 74 218-291 107-180 (429)
187 COG4235 Cytochrome c biogenesi 97.8 0.00016 3.5E-09 62.7 9.6 99 43-143 153-257 (287)
188 KOG1130 Predicted G-alpha GTPa 97.8 0.0002 4.4E-09 64.2 10.1 282 222-515 25-343 (639)
189 CHL00033 ycf3 photosystem I as 97.8 0.00063 1.4E-08 56.2 12.6 62 352-413 37-100 (168)
190 PF14938 SNAP: Soluble NSF att 97.8 0.0071 1.5E-07 54.7 19.9 129 222-351 122-269 (282)
191 COG4700 Uncharacterized protei 97.8 0.0083 1.8E-07 48.1 17.2 140 90-233 68-212 (251)
192 PF07079 DUF1347: Protein of u 97.7 0.035 7.6E-07 51.2 41.4 136 23-160 16-179 (549)
193 PF08579 RPM2: Mitochondrial r 97.7 0.00083 1.8E-08 48.8 10.4 74 221-294 32-114 (120)
194 PRK10803 tol-pal system protei 97.7 0.00061 1.3E-08 60.0 11.9 103 387-489 145-253 (263)
195 PF12688 TPR_5: Tetratrico pep 97.7 0.00072 1.6E-08 51.2 10.6 107 14-124 2-117 (120)
196 PF08579 RPM2: Mitochondrial r 97.7 0.00073 1.6E-08 49.1 9.9 78 184-261 30-116 (120)
197 COG3898 Uncharacterized membra 97.7 0.038 8.2E-07 49.9 29.1 292 217-525 85-399 (531)
198 PRK10866 outer membrane biogen 97.7 0.0096 2.1E-07 52.2 18.7 54 223-278 41-98 (243)
199 PF04840 Vps16_C: Vps16, C-ter 97.7 0.043 9.3E-07 50.1 28.5 110 321-447 179-288 (319)
200 PF13371 TPR_9: Tetratricopept 97.6 0.0002 4.4E-09 49.4 6.5 65 429-493 3-69 (73)
201 PF13281 DUF4071: Domain of un 97.6 0.024 5.2E-07 52.1 21.1 165 321-488 143-340 (374)
202 PF10037 MRP-S27: Mitochondria 97.6 0.0015 3.3E-08 61.2 13.2 124 209-332 61-186 (429)
203 PRK10866 outer membrane biogen 97.6 0.031 6.6E-07 49.1 20.7 66 76-143 30-99 (243)
204 PF05843 Suf: Suppressor of fo 97.6 0.0007 1.5E-08 60.9 10.8 129 386-516 2-136 (280)
205 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.5E-09 40.5 3.4 29 181-209 2-30 (31)
206 KOG0543 FKBP-type peptidyl-pro 97.5 0.0012 2.5E-08 59.8 11.1 138 357-516 215-355 (397)
207 PF01535 PPR: PPR repeat; Int 97.5 0.00014 2.9E-09 40.2 3.5 29 80-108 2-30 (31)
208 KOG2796 Uncharacterized conser 97.5 0.027 5.9E-07 47.9 18.2 137 351-487 178-320 (366)
209 PF13512 TPR_18: Tetratricopep 97.5 0.0023 5E-08 49.4 11.1 93 424-516 13-128 (142)
210 COG3898 Uncharacterized membra 97.5 0.065 1.4E-06 48.5 25.2 290 15-317 84-396 (531)
211 PF13424 TPR_12: Tetratricopep 97.5 0.00019 4E-09 50.4 4.8 62 454-515 6-74 (78)
212 KOG0543 FKBP-type peptidyl-pro 97.4 0.00063 1.4E-08 61.5 8.1 65 453-517 257-321 (397)
213 PF13525 YfiO: Outer membrane 97.4 0.019 4.1E-07 49.0 16.9 166 324-508 10-199 (203)
214 PF06239 ECSIT: Evolutionarily 97.4 0.003 6.4E-08 52.3 11.1 58 169-226 35-99 (228)
215 KOG2796 Uncharacterized conser 97.4 0.012 2.6E-07 50.0 14.4 133 387-520 179-319 (366)
216 PF04840 Vps16_C: Vps16, C-ter 97.4 0.11 2.4E-06 47.4 25.6 107 387-510 179-285 (319)
217 KOG1130 Predicted G-alpha GTPa 97.3 0.0021 4.6E-08 57.9 10.2 51 87-137 26-79 (639)
218 PF13525 YfiO: Outer membrane 97.3 0.062 1.3E-06 45.8 18.6 58 221-278 12-71 (203)
219 COG1729 Uncharacterized protei 97.3 0.0039 8.4E-08 53.7 10.7 91 397-487 153-249 (262)
220 KOG2280 Vacuolar assembly/sort 97.3 0.24 5.2E-06 49.0 27.9 336 142-510 426-793 (829)
221 KOG2041 WD40 repeat protein [G 97.2 0.24 5.3E-06 48.5 26.9 30 145-174 689-718 (1189)
222 PRK15180 Vi polysaccharide bio 97.2 0.18 4E-06 47.0 24.8 139 7-147 283-425 (831)
223 PF06239 ECSIT: Evolutionarily 97.2 0.0059 1.3E-07 50.6 10.7 89 211-299 44-153 (228)
224 KOG1538 Uncharacterized conser 97.2 0.1 2.3E-06 50.4 20.0 84 286-378 749-845 (1081)
225 PRK11906 transcriptional regul 97.2 0.0079 1.7E-07 56.1 12.5 145 365-511 273-431 (458)
226 COG1729 Uncharacterized protei 97.1 0.0075 1.6E-07 52.0 11.1 87 431-517 151-245 (262)
227 COG3118 Thioredoxin domain-con 97.1 0.046 1E-06 47.7 15.7 166 337-505 121-290 (304)
228 PF09205 DUF1955: Domain of un 97.1 0.047 1E-06 41.1 13.2 140 361-519 13-152 (161)
229 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.26 5.6E-06 45.7 32.6 436 35-486 31-535 (660)
230 COG3118 Thioredoxin domain-con 97.0 0.099 2.1E-06 45.7 16.9 121 394-517 143-266 (304)
231 PF13424 TPR_12: Tetratricopep 97.0 0.00089 1.9E-08 46.9 4.0 60 423-482 7-75 (78)
232 KOG4555 TPR repeat-containing 97.0 0.0085 1.8E-07 44.8 8.8 86 431-516 53-144 (175)
233 PF10300 DUF3808: Protein of u 97.0 0.071 1.5E-06 51.9 17.5 159 356-516 194-376 (468)
234 PF03704 BTAD: Bacterial trans 96.9 0.005 1.1E-07 49.4 8.0 68 455-522 64-136 (146)
235 PRK15331 chaperone protein Sic 96.9 0.027 5.9E-07 44.7 11.6 86 360-448 47-132 (165)
236 PRK11619 lytic murein transgly 96.9 0.58 1.3E-05 47.6 32.2 115 363-480 254-373 (644)
237 PF07079 DUF1347: Protein of u 96.9 0.35 7.6E-06 45.0 34.4 416 19-457 52-529 (549)
238 KOG2114 Vacuolar assembly/sort 96.9 0.57 1.2E-05 47.2 28.1 216 10-241 280-517 (933)
239 KOG2280 Vacuolar assembly/sort 96.9 0.53 1.2E-05 46.7 30.6 105 324-444 689-793 (829)
240 PF13281 DUF4071: Domain of un 96.9 0.13 2.9E-06 47.4 17.4 94 184-277 146-254 (374)
241 PRK11906 transcriptional regul 96.9 0.076 1.7E-06 49.8 15.8 140 335-478 274-432 (458)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0061 1.3E-07 56.7 8.2 58 49-106 77-140 (453)
243 KOG2610 Uncharacterized conser 96.8 0.05 1.1E-06 48.1 13.1 158 363-523 116-283 (491)
244 PF07719 TPR_2: Tetratricopept 96.8 0.0038 8.2E-08 35.1 4.5 32 455-486 3-34 (34)
245 KOG1258 mRNA processing protei 96.8 0.59 1.3E-05 45.3 33.1 406 14-435 46-489 (577)
246 PF03704 BTAD: Bacterial trans 96.8 0.027 5.9E-07 45.1 11.1 68 218-286 66-138 (146)
247 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.55 1.2E-05 43.7 31.5 127 387-515 399-530 (660)
248 KOG1585 Protein required for f 96.7 0.33 7.2E-06 41.2 17.4 198 288-510 35-250 (308)
249 COG0457 NrfG FOG: TPR repeat [ 96.6 0.41 8.9E-06 41.9 27.7 192 322-515 62-264 (291)
250 KOG1550 Extracellular protein 96.6 0.89 1.9E-05 45.6 24.3 210 299-517 308-539 (552)
251 PF00515 TPR_1: Tetratricopept 96.6 0.0043 9.4E-08 34.9 3.8 32 454-485 2-33 (34)
252 PF12921 ATP13: Mitochondrial 96.6 0.042 9.2E-07 42.2 10.3 53 380-432 47-99 (126)
253 PF13512 TPR_18: Tetratricopep 96.6 0.1 2.2E-06 40.5 12.1 117 357-490 17-136 (142)
254 COG4785 NlpI Lipoprotein NlpI, 96.5 0.097 2.1E-06 43.4 12.3 152 359-518 74-268 (297)
255 KOG2114 Vacuolar assembly/sort 96.5 1.1 2.4E-05 45.2 25.1 182 15-206 336-517 (933)
256 KOG2610 Uncharacterized conser 96.5 0.034 7.5E-07 49.1 10.3 115 396-512 114-234 (491)
257 KOG1585 Protein required for f 96.5 0.14 3E-06 43.3 13.2 204 49-273 33-251 (308)
258 PF13428 TPR_14: Tetratricopep 96.5 0.0046 1E-07 37.3 3.5 42 13-55 1-43 (44)
259 KOG1941 Acetylcholine receptor 96.3 0.1 2.3E-06 46.7 12.4 223 259-481 16-274 (518)
260 KOG4234 TPR repeat-containing 96.3 0.014 3E-07 47.4 6.4 113 392-506 102-221 (271)
261 KOG1941 Acetylcholine receptor 96.3 0.14 3E-06 46.0 12.9 224 224-447 16-272 (518)
262 KOG2396 HAT (Half-A-TPR) repea 96.3 1.1 2.3E-05 42.5 31.8 64 10-74 102-167 (568)
263 PF08631 SPO22: Meiosis protei 96.2 0.87 1.9E-05 41.1 23.9 19 462-480 255-273 (278)
264 PF10300 DUF3808: Protein of u 96.1 0.62 1.3E-05 45.5 18.0 26 287-312 191-216 (468)
265 COG4105 ComL DNA uptake lipopr 96.1 0.84 1.8E-05 39.4 19.9 57 458-514 172-231 (254)
266 PF04053 Coatomer_WDAD: Coatom 95.9 0.43 9.3E-06 45.9 15.6 156 87-274 270-427 (443)
267 PF13176 TPR_7: Tetratricopept 95.8 0.021 4.5E-07 32.6 3.9 26 489-514 1-26 (36)
268 PF13181 TPR_8: Tetratricopept 95.8 0.019 4.1E-07 32.2 3.7 31 455-485 3-33 (34)
269 PF04184 ST7: ST7 protein; In 95.8 0.36 7.8E-06 45.7 13.6 60 455-514 261-322 (539)
270 PF04184 ST7: ST7 protein; In 95.8 1.2 2.6E-05 42.4 16.9 102 386-487 260-380 (539)
271 KOG3941 Intermediate in Toll s 95.8 0.098 2.1E-06 45.2 9.2 114 167-299 53-173 (406)
272 COG4105 ComL DNA uptake lipopr 95.7 1.2 2.6E-05 38.5 19.2 174 224-413 44-232 (254)
273 KOG4555 TPR repeat-containing 95.7 0.054 1.2E-06 40.7 6.6 90 54-143 50-145 (175)
274 KOG1920 IkappaB kinase complex 95.6 2.6 5.5E-05 44.6 20.0 139 325-479 914-1052(1265)
275 smart00299 CLH Clathrin heavy 95.5 0.96 2.1E-05 35.8 14.9 123 119-260 13-136 (140)
276 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 35.7 15.0 43 219-262 12-54 (140)
277 PRK15180 Vi polysaccharide bio 95.4 0.28 6.1E-06 45.8 11.6 141 396-540 300-445 (831)
278 KOG2066 Vacuolar assembly/sort 95.4 3.4 7.3E-05 41.7 28.3 102 84-191 362-467 (846)
279 PF12921 ATP13: Mitochondrial 95.4 0.24 5.2E-06 38.1 9.5 48 210-257 48-96 (126)
280 COG2976 Uncharacterized protei 95.3 0.3 6.5E-06 40.0 10.1 127 352-484 56-190 (207)
281 KOG3941 Intermediate in Toll s 95.3 0.23 5E-06 43.0 9.9 99 66-164 53-174 (406)
282 PF04053 Coatomer_WDAD: Coatom 95.3 0.38 8.2E-06 46.3 12.6 156 21-204 269-427 (443)
283 COG4649 Uncharacterized protei 95.2 0.8 1.7E-05 36.7 11.7 50 24-74 69-121 (221)
284 COG0457 NrfG FOG: TPR repeat [ 95.2 2 4.2E-05 37.4 28.9 196 286-485 61-268 (291)
285 PF13176 TPR_7: Tetratricopept 95.1 0.04 8.6E-07 31.4 3.5 28 455-482 1-28 (36)
286 COG3629 DnrI DNA-binding trans 95.1 0.15 3.2E-06 45.0 8.4 61 455-515 155-215 (280)
287 PF13431 TPR_17: Tetratricopep 95.0 0.028 6E-07 31.5 2.5 31 36-67 2-33 (34)
288 PF07719 TPR_2: Tetratricopept 95.0 0.054 1.2E-06 30.2 3.8 30 488-517 2-31 (34)
289 PF09613 HrpB1_HrpK: Bacterial 94.9 0.72 1.6E-05 36.7 11.0 59 15-74 12-71 (160)
290 KOG4648 Uncharacterized conser 94.8 0.079 1.7E-06 47.0 6.0 97 391-489 103-201 (536)
291 PF07035 Mic1: Colon cancer-as 94.7 1.9 4.2E-05 34.9 15.3 131 234-374 14-144 (167)
292 KOG0890 Protein kinase of the 94.6 11 0.00025 43.4 25.5 310 153-483 1388-1732(2382)
293 PF13174 TPR_6: Tetratricopept 94.6 0.072 1.6E-06 29.4 3.7 28 458-485 5-32 (33)
294 KOG4234 TPR repeat-containing 94.5 0.56 1.2E-05 38.5 9.7 88 358-448 103-195 (271)
295 PF00515 TPR_1: Tetratricopept 94.5 0.075 1.6E-06 29.7 3.7 30 488-517 2-31 (34)
296 KOG1586 Protein required for f 94.3 3 6.4E-05 35.5 15.2 91 399-489 128-231 (288)
297 PF09205 DUF1955: Domain of un 94.2 1.9 4.1E-05 32.9 12.9 67 249-316 86-152 (161)
298 PF09613 HrpB1_HrpK: Bacterial 94.2 0.41 8.9E-06 38.1 8.2 83 422-504 8-95 (160)
299 KOG1586 Protein required for f 94.1 3.3 7.1E-05 35.2 16.5 56 460-515 161-223 (288)
300 COG2976 Uncharacterized protei 94.0 0.75 1.6E-05 37.7 9.5 126 14-143 55-189 (207)
301 COG4649 Uncharacterized protei 94.0 2.6 5.7E-05 33.9 15.7 119 360-481 68-195 (221)
302 PF10602 RPN7: 26S proteasome 94.0 2 4.2E-05 35.6 12.4 97 352-448 38-140 (177)
303 KOG0545 Aryl-hydrocarbon recep 93.9 0.25 5.4E-06 41.8 6.8 63 455-517 232-294 (329)
304 PRK09687 putative lyase; Provi 93.9 4.8 0.0001 36.3 27.0 60 44-104 35-98 (280)
305 PRK11619 lytic murein transgly 93.9 8.8 0.00019 39.3 37.4 116 296-412 253-373 (644)
306 COG1747 Uncharacterized N-term 93.8 6.4 0.00014 37.7 23.1 48 283-332 65-112 (711)
307 PF14853 Fis1_TPR_C: Fis1 C-te 93.8 0.28 6E-06 30.8 5.3 37 456-492 4-40 (53)
308 PF06552 TOM20_plant: Plant sp 93.7 0.18 3.9E-06 40.7 5.4 30 401-432 7-36 (186)
309 TIGR02561 HrpB1_HrpK type III 93.6 0.53 1.1E-05 36.8 7.6 72 433-504 22-95 (153)
310 PF13374 TPR_10: Tetratricopep 93.5 0.17 3.6E-06 29.8 4.1 27 455-481 4-30 (42)
311 TIGR02561 HrpB1_HrpK type III 93.4 1.8 3.8E-05 34.0 10.2 59 16-75 13-72 (153)
312 KOG4648 Uncharacterized conser 93.4 0.26 5.6E-06 43.9 6.4 92 357-452 104-197 (536)
313 PF02259 FAT: FAT domain; Int 93.4 7 0.00015 36.8 24.8 150 349-500 145-305 (352)
314 KOG0890 Protein kinase of the 93.3 20 0.00043 41.6 34.2 314 184-519 1388-1734(2382)
315 COG4785 NlpI Lipoprotein NlpI, 93.2 4.5 9.7E-05 34.0 15.2 191 49-244 67-267 (297)
316 COG3629 DnrI DNA-binding trans 92.9 0.61 1.3E-05 41.3 8.0 71 49-119 155-233 (280)
317 PF07721 TPR_4: Tetratricopept 92.8 0.18 3.8E-06 26.1 2.9 24 488-511 2-25 (26)
318 PF13174 TPR_6: Tetratricopept 92.8 0.17 3.8E-06 27.8 3.2 29 489-517 2-30 (33)
319 KOG3364 Membrane protein invol 92.5 3 6.5E-05 32.0 9.9 73 418-490 29-108 (149)
320 PRK10941 hypothetical protein; 92.4 0.83 1.8E-05 40.5 8.3 63 456-518 184-246 (269)
321 KOG4642 Chaperone-dependent E3 92.4 0.57 1.2E-05 39.7 6.8 80 434-513 23-104 (284)
322 PF13181 TPR_8: Tetratricopept 92.4 0.33 7.2E-06 26.9 4.0 29 488-516 2-30 (34)
323 PF06552 TOM20_plant: Plant sp 92.4 0.57 1.2E-05 37.9 6.5 43 468-517 95-137 (186)
324 smart00028 TPR Tetratricopepti 92.4 0.28 6E-06 26.4 3.8 29 456-484 4-32 (34)
325 PF04910 Tcf25: Transcriptiona 92.1 5.1 0.00011 37.7 13.5 59 457-515 107-167 (360)
326 PF00637 Clathrin: Region in C 92.0 0.038 8.2E-07 44.1 -0.4 85 18-106 12-98 (143)
327 PF13374 TPR_10: Tetratricopep 91.9 0.35 7.5E-06 28.4 3.9 29 488-516 3-31 (42)
328 KOG2471 TPR repeat-containing 91.9 5.9 0.00013 37.7 13.1 106 395-500 250-382 (696)
329 PF00637 Clathrin: Region in C 91.7 0.011 2.4E-07 47.2 -3.8 83 119-204 13-95 (143)
330 KOG4507 Uncharacterized conser 91.7 0.53 1.1E-05 45.3 6.5 99 397-498 619-721 (886)
331 KOG1920 IkappaB kinase complex 91.4 23 0.0005 38.1 25.3 113 281-410 932-1051(1265)
332 PF14561 TPR_20: Tetratricopep 91.3 0.83 1.8E-05 32.7 5.9 54 451-504 20-75 (90)
333 PRK12798 chemotaxis protein; R 91.0 14 0.0003 34.8 22.0 182 332-516 125-324 (421)
334 PF10602 RPN7: 26S proteasome 90.9 3.2 6.9E-05 34.4 9.8 62 80-141 38-101 (177)
335 COG3947 Response regulator con 90.8 11 0.00024 33.3 14.0 60 456-515 282-341 (361)
336 KOG1464 COP9 signalosome, subu 90.8 11 0.00023 33.0 14.4 157 352-508 67-252 (440)
337 PF02259 FAT: FAT domain; Int 90.7 15 0.00032 34.5 20.8 54 255-312 4-57 (352)
338 PF11207 DUF2989: Protein of u 90.6 2.9 6.3E-05 34.8 9.0 71 436-507 121-198 (203)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 90.3 2.5 5.4E-05 30.2 7.1 63 365-429 22-84 (103)
340 COG0790 FOG: TPR repeat, SEL1 90.3 14 0.00031 33.6 20.2 77 439-518 173-268 (292)
341 TIGR02508 type_III_yscG type I 90.1 5.5 0.00012 28.7 10.4 97 18-118 10-107 (115)
342 KOG1308 Hsp70-interacting prot 90.0 0.24 5.3E-06 44.2 2.6 119 395-516 124-244 (377)
343 KOG0276 Vesicle coat complex C 90.0 4.8 0.0001 39.3 11.0 98 160-274 649-746 (794)
344 PF02284 COX5A: Cytochrome c o 90.0 2.8 6.1E-05 30.3 7.2 60 368-429 28-87 (108)
345 KOG2300 Uncharacterized conser 89.7 20 0.00043 34.4 31.6 396 15-411 9-511 (629)
346 KOG0276 Vesicle coat complex C 89.6 7.9 0.00017 38.0 12.1 149 161-345 599-747 (794)
347 KOG1550 Extracellular protein 89.6 25 0.00055 35.5 25.8 276 195-485 228-541 (552)
348 PF13170 DUF4003: Protein of u 89.2 17 0.00037 33.0 19.3 131 195-327 78-225 (297)
349 PF07035 Mic1: Colon cancer-as 89.0 11 0.00024 30.6 15.0 97 136-240 17-115 (167)
350 PRK09687 putative lyase; Provi 88.8 18 0.00038 32.7 27.0 28 248-276 141-168 (280)
351 PF13170 DUF4003: Protein of u 88.8 18 0.00039 32.9 15.3 49 95-143 79-133 (297)
352 TIGR03504 FimV_Cterm FimV C-te 88.4 1.1 2.3E-05 26.9 3.7 27 491-517 3-29 (44)
353 PF04910 Tcf25: Transcriptiona 88.3 23 0.00049 33.4 14.3 58 356-413 109-167 (360)
354 PF04097 Nic96: Nup93/Nic96; 88.2 33 0.00072 35.2 22.3 46 80-126 113-158 (613)
355 PF09986 DUF2225: Uncharacteri 88.1 3.1 6.8E-05 35.6 7.9 65 455-519 120-197 (214)
356 smart00386 HAT HAT (Half-A-TPR 88.1 1.3 2.8E-05 24.0 3.9 30 467-496 1-30 (33)
357 smart00028 TPR Tetratricopepti 87.3 1.2 2.6E-05 23.6 3.6 29 488-516 2-30 (34)
358 KOG2066 Vacuolar assembly/sort 87.2 38 0.00082 34.7 24.4 22 185-206 511-532 (846)
359 PF10579 Rapsyn_N: Rapsyn N-te 87.1 1.6 3.4E-05 29.8 4.3 46 465-510 18-66 (80)
360 PF08631 SPO22: Meiosis protei 87.0 23 0.0005 32.0 25.3 15 329-343 256-270 (278)
361 KOG4279 Serine/threonine prote 87.0 38 0.00083 34.5 16.6 215 232-496 181-409 (1226)
362 COG1747 Uncharacterized N-term 86.9 31 0.00067 33.4 24.4 176 75-258 63-248 (711)
363 COG3947 Response regulator con 86.5 23 0.0005 31.5 14.2 58 252-310 282-339 (361)
364 PF10345 Cohesin_load: Cohesin 86.3 43 0.00094 34.4 35.7 172 32-205 40-251 (608)
365 COG2909 MalT ATP-dependent tra 86.0 48 0.001 34.7 29.0 85 124-208 426-526 (894)
366 PF04097 Nic96: Nup93/Nic96; 85.8 45 0.00098 34.2 22.4 85 257-346 266-354 (613)
367 PF11207 DUF2989: Protein of u 85.7 13 0.00027 31.2 9.7 68 130-198 123-197 (203)
368 KOG3824 Huntingtin interacting 85.7 2.4 5.2E-05 37.5 5.8 52 463-514 126-177 (472)
369 KOG4570 Uncharacterized conser 85.7 10 0.00022 34.0 9.5 100 143-243 59-164 (418)
370 PF10345 Cohesin_load: Cohesin 85.5 47 0.001 34.2 39.2 49 466-514 547-604 (608)
371 KOG1464 COP9 signalosome, subu 85.2 25 0.00055 30.8 18.7 242 229-476 42-326 (440)
372 PF07721 TPR_4: Tetratricopept 84.8 0.98 2.1E-05 23.3 2.0 23 49-71 3-25 (26)
373 KOG0551 Hsp90 co-chaperone CNS 84.7 4.4 9.4E-05 36.5 7.0 91 423-513 83-179 (390)
374 TIGR02508 type_III_yscG type I 84.7 13 0.00028 26.9 9.4 87 128-218 20-106 (115)
375 PF08424 NRDE-2: NRDE-2, neces 84.4 21 0.00045 33.1 11.9 137 7-144 13-185 (321)
376 KOG4570 Uncharacterized conser 84.3 12 0.00026 33.6 9.4 100 178-279 63-165 (418)
377 KOG3364 Membrane protein invol 84.2 5.3 0.00012 30.7 6.4 68 450-517 29-101 (149)
378 KOG2396 HAT (Half-A-TPR) repea 84.1 42 0.00092 32.5 37.8 241 267-515 300-558 (568)
379 cd00923 Cyt_c_Oxidase_Va Cytoc 83.9 8.1 0.00018 27.7 6.7 45 96-140 25-69 (103)
380 COG4455 ImpE Protein of avirul 83.7 5.5 0.00012 33.6 6.8 65 424-488 4-70 (273)
381 PF07720 TPR_3: Tetratricopept 83.6 4.3 9.3E-05 23.0 4.4 29 456-484 4-34 (36)
382 COG4976 Predicted methyltransf 83.5 2.2 4.7E-05 36.1 4.5 59 431-489 5-65 (287)
383 PRK10941 hypothetical protein; 83.2 10 0.00022 33.8 9.0 68 425-492 185-254 (269)
384 KOG2422 Uncharacterized conser 83.0 26 0.00056 34.5 11.7 50 361-411 249-310 (665)
385 PF02284 COX5A: Cytochrome c o 83.0 10 0.00023 27.5 7.1 47 96-142 28-74 (108)
386 PF12862 Apc5: Anaphase-promot 83.0 4.6 0.0001 29.2 5.7 54 463-516 8-70 (94)
387 KOG0376 Serine-threonine phosp 82.3 1.2 2.7E-05 42.0 3.0 101 392-495 11-114 (476)
388 KOG2063 Vacuolar assembly/sort 82.2 63 0.0014 34.3 15.1 27 181-207 506-532 (877)
389 PF09477 Type_III_YscG: Bacter 81.1 19 0.00042 26.4 9.9 97 17-117 10-107 (116)
390 KOG1308 Hsp70-interacting prot 80.7 1.3 2.9E-05 39.8 2.5 87 25-112 126-216 (377)
391 PF14853 Fis1_TPR_C: Fis1 C-te 79.8 3.5 7.5E-05 25.9 3.5 33 15-47 3-36 (53)
392 PF14561 TPR_20: Tetratricopep 79.7 19 0.00041 25.8 7.7 42 475-516 10-51 (90)
393 KOG0686 COP9 signalosome, subu 79.7 55 0.0012 30.8 12.7 58 49-106 152-215 (466)
394 KOG2422 Uncharacterized conser 79.4 69 0.0015 31.7 15.7 151 25-176 250-447 (665)
395 PF09670 Cas_Cas02710: CRISPR- 79.4 49 0.0011 31.5 12.6 18 362-379 143-160 (379)
396 KOG2471 TPR repeat-containing 79.2 64 0.0014 31.2 15.5 102 328-432 249-380 (696)
397 KOG0376 Serine-threonine phosp 78.9 4.2 9.2E-05 38.6 5.2 107 15-123 6-115 (476)
398 KOG4642 Chaperone-dependent E3 78.8 34 0.00074 29.6 9.8 85 395-482 20-107 (284)
399 TIGR03504 FimV_Cterm FimV C-te 78.7 5.6 0.00012 23.8 4.0 24 356-379 5-28 (44)
400 COG4976 Predicted methyltransf 78.6 4.7 0.0001 34.2 4.8 51 395-447 5-55 (287)
401 PF07163 Pex26: Pex26 protein; 78.5 48 0.001 29.5 12.2 28 15-42 37-64 (309)
402 KOG4077 Cytochrome c oxidase, 78.2 16 0.00035 27.8 6.9 59 368-428 67-125 (149)
403 COG5191 Uncharacterized conser 77.6 5.1 0.00011 35.7 5.0 79 417-495 103-184 (435)
404 PRK13800 putative oxidoreducta 77.6 1.1E+02 0.0025 33.2 29.5 154 317-481 726-880 (897)
405 PF10579 Rapsyn_N: Rapsyn N-te 77.2 4.1 8.9E-05 27.9 3.4 45 24-68 17-64 (80)
406 PF14863 Alkyl_sulf_dimr: Alky 76.8 13 0.00029 29.2 6.7 64 438-504 58-121 (141)
407 cd08819 CARD_MDA5_2 Caspase ac 76.5 21 0.00046 25.1 6.7 65 132-198 21-85 (88)
408 KOG2581 26S proteasome regulat 76.1 71 0.0015 30.1 12.5 63 423-485 211-279 (493)
409 KOG4507 Uncharacterized conser 76.0 13 0.00028 36.5 7.5 86 433-518 619-707 (886)
410 PF07163 Pex26: Pex26 protein; 75.8 38 0.00082 30.1 9.6 85 324-408 88-181 (309)
411 COG2909 MalT ATP-dependent tra 72.9 1.3E+02 0.0028 31.7 29.8 218 225-446 426-684 (894)
412 COG2912 Uncharacterized conser 72.0 18 0.00038 32.0 6.9 59 459-517 187-245 (269)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 72.0 40 0.00087 26.0 8.3 42 471-512 81-124 (126)
414 KOG0530 Protein farnesyltransf 71.1 74 0.0016 28.1 12.9 132 360-495 53-189 (318)
415 KOG4814 Uncharacterized conser 71.0 54 0.0012 32.9 10.3 86 431-516 364-457 (872)
416 cd00280 TRFH Telomeric Repeat 68.5 67 0.0014 26.6 10.1 39 462-501 120-158 (200)
417 PF12862 Apc5: Anaphase-promot 68.2 25 0.00054 25.4 6.1 28 456-483 44-71 (94)
418 COG4455 ImpE Protein of avirul 68.1 77 0.0017 27.1 11.3 76 354-430 5-81 (273)
419 KOG0889 Histone acetyltransfer 68.0 3.3E+02 0.007 34.3 23.3 33 462-494 2821-2853(3550)
420 PF14689 SPOB_a: Sensor_kinase 67.9 14 0.0003 24.1 4.3 29 248-276 22-50 (62)
421 PF13762 MNE1: Mitochondrial s 67.8 60 0.0013 25.7 10.0 75 152-226 43-127 (145)
422 PF10516 SHNi-TPR: SHNi-TPR; 65.9 17 0.00036 21.0 3.8 28 488-515 2-29 (38)
423 PF11846 DUF3366: Domain of un 65.1 33 0.00073 28.9 7.3 34 451-484 142-175 (193)
424 PRK14962 DNA polymerase III su 65.1 1.4E+02 0.0031 29.4 12.4 23 90-112 255-277 (472)
425 KOG2063 Vacuolar assembly/sort 63.4 2.1E+02 0.0047 30.6 18.1 27 80-106 506-532 (877)
426 PHA02875 ankyrin repeat protei 63.4 1.2E+02 0.0027 29.3 11.9 18 156-173 73-90 (413)
427 PF13934 ELYS: Nuclear pore co 62.8 1E+02 0.0023 26.8 13.7 173 315-509 22-198 (226)
428 PRK13184 pknD serine/threonine 62.4 2.4E+02 0.0051 30.8 23.7 90 185-278 481-581 (932)
429 PF15469 Sec5: Exocyst complex 62.0 37 0.00081 28.3 6.9 118 385-527 57-179 (182)
430 KOG4567 GTPase-activating prot 61.5 1.3E+02 0.0028 27.3 10.1 73 370-448 263-345 (370)
431 PF02184 HAT: HAT (Half-A-TPR) 61.0 25 0.00055 19.3 3.6 27 468-495 2-28 (32)
432 PF11817 Foie-gras_1: Foie gra 60.9 27 0.00059 30.8 6.2 57 83-139 183-244 (247)
433 PHA02537 M terminase endonucle 60.4 45 0.00098 28.9 7.1 24 359-382 92-115 (230)
434 PF11846 DUF3366: Domain of un 59.3 39 0.00084 28.5 6.7 51 397-447 120-170 (193)
435 KOG4077 Cytochrome c oxidase, 59.1 62 0.0014 24.8 6.6 39 102-140 73-111 (149)
436 cd08819 CARD_MDA5_2 Caspase ac 58.8 62 0.0014 22.9 6.8 38 331-369 48-85 (88)
437 KOG2659 LisH motif-containing 58.2 1E+02 0.0022 26.5 8.6 20 358-377 72-91 (228)
438 KOG3807 Predicted membrane pro 57.6 1.5E+02 0.0033 27.1 14.8 23 470-492 379-401 (556)
439 COG5159 RPN6 26S proteasome re 57.6 1.4E+02 0.0031 26.7 21.3 52 84-135 9-67 (421)
440 PF13929 mRNA_stabil: mRNA sta 57.6 1.5E+02 0.0032 26.8 13.7 63 281-343 199-262 (292)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 57.4 87 0.0019 24.2 8.3 42 131-172 81-123 (126)
442 COG0735 Fur Fe2+/Zn2+ uptake r 56.9 73 0.0016 25.3 7.4 63 371-435 7-69 (145)
443 cd00280 TRFH Telomeric Repeat 55.9 49 0.0011 27.3 6.1 20 87-106 120-139 (200)
444 PF08424 NRDE-2: NRDE-2, neces 55.8 1.7E+02 0.0038 27.1 17.3 160 348-518 17-211 (321)
445 KOG2297 Predicted translation 54.6 1.7E+02 0.0036 26.6 10.4 15 388-402 324-338 (412)
446 COG5159 RPN6 26S proteasome re 54.3 1.6E+02 0.0035 26.4 21.0 159 324-484 130-316 (421)
447 PF11848 DUF3368: Domain of un 54.2 49 0.0011 20.2 5.1 33 361-393 13-45 (48)
448 PF12069 DUF3549: Protein of u 54.1 1.9E+02 0.004 26.9 12.9 86 325-413 172-258 (340)
449 COG4259 Uncharacterized protei 53.8 59 0.0013 23.6 5.4 34 457-490 76-109 (121)
450 PF12968 DUF3856: Domain of Un 53.6 76 0.0017 24.1 6.2 20 423-442 57-76 (144)
451 KOG1524 WD40 repeat-containing 53.6 77 0.0017 30.9 7.9 56 384-446 572-627 (737)
452 PF12069 DUF3549: Protein of u 53.6 1.9E+02 0.0041 26.9 14.0 89 51-142 170-259 (340)
453 PRK10564 maltose regulon perip 53.5 29 0.00063 31.2 4.9 37 81-117 260-296 (303)
454 KOG2034 Vacuolar sorting prote 53.4 3E+02 0.0066 29.2 33.0 53 53-105 364-416 (911)
455 PF14689 SPOB_a: Sensor_kinase 53.2 44 0.00096 21.8 4.7 24 218-241 27-50 (62)
456 PF11817 Foie-gras_1: Foie gra 53.2 60 0.0013 28.7 7.1 20 392-411 185-204 (247)
457 KOG0991 Replication factor C, 53.2 1.5E+02 0.0033 25.7 15.2 150 323-498 134-283 (333)
458 PF10255 Paf67: RNA polymerase 52.0 38 0.00083 32.2 5.8 58 49-106 124-192 (404)
459 PF12968 DUF3856: Domain of Un 51.9 1E+02 0.0023 23.4 10.0 61 454-514 56-127 (144)
460 KOG1498 26S proteasome regulat 50.8 2.2E+02 0.0048 26.9 14.1 107 425-531 135-256 (439)
461 KOG2300 Uncharacterized conser 50.2 2.6E+02 0.0056 27.4 35.9 157 357-514 330-512 (629)
462 PF09986 DUF2225: Uncharacteri 50.1 1.7E+02 0.0036 25.2 10.4 30 454-483 166-195 (214)
463 KOG3824 Huntingtin interacting 50.1 24 0.00053 31.5 3.9 49 397-447 128-176 (472)
464 KOG4567 GTPase-activating prot 50.0 1.2E+02 0.0027 27.4 8.0 42 235-276 264-305 (370)
465 PF09477 Type_III_YscG: Bacter 49.5 1.1E+02 0.0023 22.8 11.2 82 125-209 18-99 (116)
466 KOG0292 Vesicle coat complex C 48.9 33 0.0007 35.7 5.0 100 395-512 653-752 (1202)
467 PF11768 DUF3312: Protein of u 48.4 2.9E+02 0.0064 27.6 12.2 56 323-378 412-472 (545)
468 PRK10564 maltose regulon perip 48.4 52 0.0011 29.7 5.7 41 247-287 254-295 (303)
469 COG0735 Fur Fe2+/Zn2+ uptake r 48.2 87 0.0019 24.9 6.5 32 255-286 26-57 (145)
470 PF10366 Vps39_1: Vacuolar sor 48.2 1.1E+02 0.0025 22.7 6.9 26 182-207 42-67 (108)
471 KOG1839 Uncharacterized protei 47.7 1.4E+02 0.003 33.0 9.5 122 394-516 941-1086(1236)
472 PRK13800 putative oxidoreducta 47.3 4.2E+02 0.0091 29.0 30.9 265 169-460 625-891 (897)
473 cd02679 MIT_spastin MIT: domai 46.5 61 0.0013 22.5 4.7 43 465-515 20-67 (79)
474 KOG3677 RNA polymerase I-assoc 46.2 36 0.00078 32.0 4.5 20 85-104 279-298 (525)
475 cd02680 MIT_calpain7_2 MIT: do 45.4 46 0.001 22.8 3.9 19 464-482 17-35 (75)
476 smart00777 Mad3_BUB1_I Mad3/BU 45.3 1.4E+02 0.0031 23.0 8.1 41 471-511 81-123 (125)
477 PF04781 DUF627: Protein of un 44.1 1.4E+02 0.0029 22.5 6.5 27 393-419 4-30 (111)
478 PF11848 DUF3368: Domain of un 43.8 75 0.0016 19.4 4.9 31 90-120 14-44 (48)
479 KOG0292 Vesicle coat complex C 43.7 3.6E+02 0.0078 28.8 11.1 131 329-483 653-783 (1202)
480 PRK13342 recombination factor 43.3 3.2E+02 0.0069 26.5 19.4 24 193-216 244-267 (413)
481 PF09670 Cas_Cas02710: CRISPR- 43.2 3.1E+02 0.0066 26.3 11.8 55 87-142 140-198 (379)
482 COG4941 Predicted RNA polymera 43.2 2.8E+02 0.006 25.7 12.6 120 365-488 271-400 (415)
483 PF04190 DUF410: Protein of un 42.9 2.5E+02 0.0054 25.1 18.5 191 58-274 1-216 (260)
484 KOG0991 Replication factor C, 42.8 2.3E+02 0.005 24.7 12.8 44 342-386 231-274 (333)
485 PF12583 TPPII_N: Tripeptidyl 42.3 1.1E+02 0.0024 23.6 5.8 38 462-499 85-122 (139)
486 PF10255 Paf67: RNA polymerase 42.1 69 0.0015 30.6 5.9 63 386-448 123-191 (404)
487 COG5108 RPO41 Mitochondrial DN 41.5 1.3E+02 0.0029 30.5 7.7 101 18-119 33-144 (1117)
488 PF10475 DUF2450: Protein of u 41.4 2.8E+02 0.0061 25.3 13.7 52 220-277 104-155 (291)
489 PF06957 COPI_C: Coatomer (COP 41.3 1.1E+02 0.0024 29.4 7.0 32 455-486 302-333 (422)
490 TIGR02710 CRISPR-associated pr 41.0 3.3E+02 0.0071 26.0 11.8 26 358-383 138-163 (380)
491 PF10366 Vps39_1: Vacuolar sor 40.9 1.5E+02 0.0033 22.1 7.9 27 352-378 41-67 (108)
492 COG0790 FOG: TPR repeat, SEL1 40.7 2.8E+02 0.0061 25.1 22.4 16 264-279 128-143 (292)
493 PF04762 IKI3: IKI3 family; I 40.7 5.1E+02 0.011 28.5 12.6 206 153-376 699-927 (928)
494 PRK14700 recombination factor 40.6 2.9E+02 0.0062 25.2 16.7 124 109-245 63-197 (300)
495 PF04034 DUF367: Domain of unk 40.5 1.7E+02 0.0037 22.6 6.9 58 421-478 66-124 (127)
496 PF10373 EST1_DNA_bind: Est1 D 40.4 66 0.0014 28.9 5.6 36 472-507 1-36 (278)
497 COG5191 Uncharacterized conser 40.1 61 0.0013 29.3 4.8 77 450-528 104-181 (435)
498 KOG4521 Nuclear pore complex, 39.7 5.7E+02 0.012 28.4 14.5 26 388-413 986-1011(1480)
499 KOG4521 Nuclear pore complex, 39.7 3.6E+02 0.0078 29.8 10.7 128 14-141 984-1131(1480)
500 PF11663 Toxin_YhaV: Toxin wit 39.6 43 0.00092 26.0 3.3 32 190-223 106-137 (140)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-76 Score=610.61 Aligned_cols=530 Identities=33% Similarity=0.572 Sum_probs=482.9
Q ss_pred CCcchHHHHHHHhhccchhhhhhHHhHHHhh-----------------------------------c--ccchhhHHHHH
Q 044352 11 LSVNYLDCLLGKCMKSKALRQGKQVHALLCT-----------------------------------N--DLNIFSLKSKL 53 (544)
Q Consensus 11 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------------~--~~~~~~~~~~l 53 (544)
++..+|+.++.+|.+.|++++|..+|++|.. . .|+.. +++.+
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~n~L 228 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-VVNAL 228 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-hHhHH
Confidence 4455666666666666666666666665554 3 44566 77889
Q ss_pred HHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHH
Q 044352 54 VGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGK 133 (544)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 133 (544)
+.+|++.|++++|..+|++++.+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCC
Q 044352 134 QVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPN 213 (544)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 213 (544)
+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..+|..+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH----------------
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLV---------------- 277 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------- 277 (544)
..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+..|++.|++++|.++|++|.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 9999888888888888888888888887777777776666666666666666665555555432
Q ss_pred --------------cCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 278 --------------SGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFE 343 (544)
Q Consensus 278 --------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 343 (544)
.++.||..||..++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+++|++++|.++|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 246788888888888888888888888888888888888888899999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhH
Q 044352 344 ITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEH 423 (544)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (544)
.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999977799999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCh
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEW 503 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 503 (544)
|+.++.+|++.|++++|.+++++|+..|+..+|.+++.+|..+|+.+.++...+++++++|+++..|..++++|...|+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCceEEEecC---eeecccccccc
Q 044352 504 HEAENLRKIMKEKNVQKQPGFSRVEKRN---EFVEKEVQNES 542 (544)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 542 (544)
++|.++.+.|.++|++++|++||+++++ .|..||..++.
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcc
Confidence 9999999999999999999999999999 99999998764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-68 Score=543.89 Aligned_cols=489 Identities=26% Similarity=0.430 Sum_probs=473.1
Q ss_pred chhhHHHHHHHHhhcCCChHHHHHHhccCC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHH
Q 044352 45 NIFSLKSKLVGVYAGCGDVNSARLVFDKIP-----NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV 119 (544)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 119 (544)
+.. .++.++..+.+.|++++|.++|+.+. .+|..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~-~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGV-SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred Cce-eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 445 78999999999999999999999885 478899999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC----CChhhHHHHHHHHhccCCh
Q 044352 120 LKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE----RDVVSWTSMISGYCNVSKV 195 (544)
Q Consensus 120 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 195 (544)
+..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ++..+|+.++.+++..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999995 58999999999999999999999999999944 7889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044352 196 DEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGM 275 (544)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (544)
+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHH
Q 044352 276 LVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNA 355 (544)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 355 (544)
.+.|+.||..||..++.+|++.|+++.|.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.|.++|..+|+.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+|+.++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999987799999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 436 RMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 436 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
++++|.+++++++..|+..+|.+++.+|...|+.+.|..+++++++++|++...|..++.+|.+.|++++|.++++.|.+
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEecC---eeecccccccc
Q 044352 516 KNVQKQPGFSRVEKRN---EFVEKEVQNES 542 (544)
Q Consensus 516 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 542 (544)
+|+++.|++||+++++ .|..||..++.
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 9999999999999998 99999987764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-67 Score=543.16 Aligned_cols=507 Identities=29% Similarity=0.470 Sum_probs=453.9
Q ss_pred CCcchHHHHHHHhhccchhhhhhHHhHHHhhc--ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHH
Q 044352 11 LSVNYLDCLLGKCMKSKALRQGKQVHALLCTN--DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMAS 88 (544)
Q Consensus 11 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 88 (544)
|+..+|..++.+|...+.++.|.+++..+++. .++.. .++.++..|++.|+++.|.++|++|+++|..+|+.+|.+|
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 34445666666666666666666666666666 45566 7789999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 044352 89 AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSAR 168 (544)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 168 (544)
++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+.|+.|+..+++.++.+|++.|+++.|.
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC---
Q 044352 169 RVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGF--- 245 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 245 (544)
.+|++|..+|..+||+++.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999988888877776666555555544444444444444443
Q ss_pred ----------------------------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 044352 246 ----------------------------VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLT 297 (544)
Q Consensus 246 ----------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (544)
.||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 4556667777777777888888888888888899999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 298 GSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERML 377 (544)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 377 (544)
|+++.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.|.++|..+|+.++.+|++.|+.++|+.+|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHH
Q 044352 378 EEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAG 457 (544)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (544)
. ++.||..||..++.+|++.|.++.+.+++..+.+. |+.++..+++.++.+|+++|++++|.++|+.+ .+|..+|+
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n 558 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWN 558 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHH
Confidence 6 58999999999999999999999999999999887 99999999999999999999999999999998 78999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMG-LRKPDGFVMLSNICAADGEWHEAENLRKIMK-EKNVQKQP 522 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 522 (544)
.++.+|.+.|+.++|.++|+++.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999999999876 4578899999999999999999999999998 67877765
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-65 Score=519.54 Aligned_cols=509 Identities=17% Similarity=0.206 Sum_probs=475.5
Q ss_pred CCcchHHHHHHHhhccchhhhhhHHhHHHhhc---ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHH
Q 044352 11 LSVNYLDCLLGKCMKSKALRQGKQVHALLCTN---DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMA 87 (544)
Q Consensus 11 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 87 (544)
++...|..+...+.+.|++++|.++++.|.+. +++.. .+..++..|.+.|..++|..+|+.+..||..+|+.++.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34567888888999999999999999999988 67777 888999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSA 167 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 167 (544)
|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc----CCChhhHHHHHHHHhccCChhHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 044352 168 RRVFHGMF----ERDVVSWTSMISGYCNVSKVDEAVVLFERMKL--EGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMT 241 (544)
Q Consensus 168 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (544)
..+|+.|. .||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999995 48999999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHH
Q 044352 242 AEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFT 321 (544)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (544)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044352 322 GSALIDMYSKCGSLKDARTLFEITR----IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH 397 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (544)
|+.++.+|++.|++++|.++|+.|. .|+..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985 589999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hc-------------------CCHHHHHHHHHhCC---CCC
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLC----RS-------------------GRMVEAYDLLRQVP---MYV 451 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~---~~~ 451 (544)
.|+++.|.+++..|.+. |+.||..+|+.++..+. ++ +..+.|..+|++|. ..|
T Consensus 767 ~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 99999999999999887 99999999999986533 21 22467999999985 789
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM-GLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPG 523 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 523 (544)
+..+|..++.++...+..+.+..+++.+... .+++..+|..++..+.+ ..++|..++++|.+.|+.|+-.
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998888889999998888876544 36678899999998732 2368999999999999987764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-60 Score=481.20 Aligned_cols=474 Identities=18% Similarity=0.244 Sum_probs=440.0
Q ss_pred ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHH
Q 044352 43 DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN-----PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFS 117 (544)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 117 (544)
.++.. .+..+...+++.|++++|+++|+.|.. ++...++.++.+|.+.|..++|..+++.|.. |+..+|+
T Consensus 367 ~~~~~-~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSP-EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCch-HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 55666 788888999999999999999999984 4455667788889999999999999999974 9999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhcc----CCChhhHHHHHHHHhccC
Q 044352 118 IVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMF----ERDVVSWTSMISGYCNVS 193 (544)
Q Consensus 118 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~ 193 (544)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999996 489999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh--CCCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 044352 194 KVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTA--EGFVPDLVTWNAMISGFAQSKRENEALKL 271 (544)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (544)
++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 044352 272 FKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---- 347 (544)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 347 (544)
|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044352 348 KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACV 427 (544)
Q Consensus 348 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 427 (544)
++..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSIL 760 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHhh-----------------------cCChHHHHHHHHHHHH
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP---MYVTNSMAGAFRNGCNI-----------------------HGRRDLAVTMGEEFFE 481 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~ 481 (544)
+.+|++.|++++|.++++.|. ..|+..+++.++..|.+ .+..+.|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 999999999999999999984 78899999988765432 1235789999999999
Q ss_pred cC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 044352 482 MG-LRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQP 522 (544)
Q Consensus 482 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 522 (544)
.+ +++..+|..++.++.+.+..+.+..+++.|...+..++.
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 87 557889999998888899999998888887665554443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-58 Score=463.79 Aligned_cols=428 Identities=24% Similarity=0.377 Sum_probs=408.6
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc--ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHH
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN--DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMA 87 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 87 (544)
+|+..+|..++.+|++.++++.|.+++..+.+. .|+.. +++.++.+|++.|++++|.++|++++.||..+|+.++.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 467889999999999999999999999999998 88999 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSA 167 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 167 (544)
|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|..+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 044352 168 RRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVP 247 (544)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 247 (544)
.++|++|.++|..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALID 327 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (544)
|..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 044352 328 MYSKCGSLKDARTLFEITRI-----KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVE 402 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (544)
+|.+.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999998863 78889999999999999999999998876 47899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 403 KGLEIFRSMKERYGVKI-SKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
.|..+++++.+ ..| +..+|..++..|++.|++++|.++++.|.
T Consensus 512 ~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 512 LGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999998864 445 46799999999999999999999999885
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-36 Score=321.17 Aligned_cols=498 Identities=11% Similarity=0.050 Sum_probs=360.8
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHH
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMV 85 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 85 (544)
|.++..+..+...+...|++++|.+.++++.+. |.+.. .+..++..+...|++++|+..|+.+. +.+......++
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 334445555555555555555555555555555 33334 55555555555555555555555443 22233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHH
Q 044352 86 MASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLC 165 (544)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (544)
..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 5555666666666666666543 23455566777777777777777777777776654 445556666777777777777
Q ss_pred HHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044352 166 SARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTA 242 (544)
Q Consensus 166 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (544)
+|...++++.. .+..++..+...+.+.|++++|...+.++...+ +.+...+..++..+...|++++|..+++.+.+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777643 345567777777777788888888887776554 44555666777778888888888888888776
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHH
Q 044352 243 EGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTG 322 (544)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (544)
.. +.+...|..++.++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 53 5567778888888888888888888888887653 3455667777778888888888888888887764 3456777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGG 399 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (544)
..++..+...|++++|..+++.+.. .+...+..+...+...|++++|...++++... .|+..++..+..++...|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 7888888888888888888877764 35567777888888888999999999888885 455577777888888889
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGE 477 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (544)
++++|.+.++++.+ ..+.+...+..++..|...|++++|.+.|+++. .++++..+..++..+...|+ .+|+.+++
T Consensus 751 ~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999998888877 346677888888888999999999999998874 45567788888888888888 78999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 478 EFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 478 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
+++++.|+++..+..++.++...|++++|.++++++++.+..
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999887643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-35 Score=316.64 Aligned_cols=498 Identities=11% Similarity=0.002 Sum_probs=440.6
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHH
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLN 82 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 82 (544)
..+|.+...+..+...+...|++++|...++.+.+. +.... ....++..+.+.|++++|+..++.+. +.++..|.
T Consensus 391 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 469 (899)
T TIGR02917 391 ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR-ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHN 469 (899)
T ss_pred hcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 345667778899999999999999999999999998 55555 78888999999999999999999886 56778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 044352 83 WMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCG 162 (544)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (544)
.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+...+.+.|
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999998753 2345677788888999999999999999999875 667888999999999999
Q ss_pred CHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 163 LLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 163 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
+.++|...++++.. .+...+..++..+...|++++|..+++++.... +.+...|..+...+...|++++|...|+.
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999854 455678889999999999999999999998654 56778899999999999999999999999
Q ss_pred hhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCH
Q 044352 240 MTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDV 319 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (544)
+.+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 98764 5567788899999999999999999999998754 4567888999999999999999999999998886 4567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044352 320 FTGSALIDMYSKCGSLKDARTLFEITRI--KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH 397 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (544)
..+..+...+...|++++|...|+.+.. |+..++..++.++...|++++|.+.++++.+. .+.+...+..+...|..
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 7888899999999999999999998764 55577888899999999999999999999986 36678899999999999
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHH
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
.|++++|.+.|+++.+. .+.+...+..++..+...|+ .+|+.+++++. .+.++..+..++.++...|++++|..+
T Consensus 783 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874 46778899999999999999 88999999874 344566788888899999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 476 GEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 476 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
++++++.+|.++.++..++.++.+.|++++|++++++|++
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.7e-27 Score=251.88 Aligned_cols=489 Identities=12% Similarity=0.021 Sum_probs=226.1
Q ss_pred HHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhH----------
Q 044352 16 LDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFML---------- 81 (544)
Q Consensus 16 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~---------- 81 (544)
+..-++.+...++.+.|.+.+++++.. |.++. ++..++..+.+.|+.++|.+.++++. |.++..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~-~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPD-VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 444445555555555555555555555 44444 55555555555555555555555544 2222211
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 044352 82 ------NWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNAL 154 (544)
Q Consensus 82 ------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 154 (544)
..+...+...|++++|+..|+++.+.+ +|+.. ............|+.++|...++++.+.. |.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 112223445555555555555555432 12211 11111111123355555555555555543 3344445555
Q ss_pred HHHHHhCCCHHHHHHHHhhccCCCh-----------------------hhH-----------------------------
Q 044352 155 IDMYSKCGLLCSARRVFHGMFERDV-----------------------VSW----------------------------- 182 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------~~~----------------------------- 182 (544)
...+...|+.++|...++++..... ..+
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 5555555555555555554421000 000
Q ss_pred -----HHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHhHH----
Q 044352 183 -----TSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVP-DLVTW---- 252 (544)
Q Consensus 183 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 252 (544)
......+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+..-.. ....|
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 011233445566666666666665542 2345556666666666666666666666665442110 11111
Q ss_pred --------HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 253 --------NAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSA 324 (544)
Q Consensus 253 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (544)
......+.+.|++++|...|++++... +.+...+..+..++...|++++|.+.|+++.+... .+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 111234556666666666666666542 23344555556666666666666666666665532 22333333
Q ss_pred HHHH------------------------------------------HHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHH
Q 044352 325 LIDM------------------------------------------YSKCGSLKDARTLFEITRI---KNVASWNAMIGC 359 (544)
Q Consensus 325 l~~~------------------------------------------~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 359 (544)
+... +...|++++|.+.|++... .++..+..+...
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3333 3344555555555544432 123344445555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch---------hHHHHHHHH
Q 044352 360 YGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK---------EHYACVVDM 430 (544)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~~~ 430 (544)
|...|++++|...++++.+.. +.+...+..+...+...++.++|...++.+... ...++. ..+..++..
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHH
Confidence 555555555555555554421 223333333333344455555555555443110 000000 000111222
Q ss_pred HHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044352 431 LCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLR 510 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 510 (544)
+...|+.++|.++++.- +.++..+..++..+...|++++|+..|+++++.+|+++.++..++.+|...|++++|++.+
T Consensus 583 l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333444444433321 1223333444444555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 044352 511 KIMK 514 (544)
Q Consensus 511 ~~~~ 514 (544)
+++.
T Consensus 661 ~~ll 664 (1157)
T PRK11447 661 AKLP 664 (1157)
T ss_pred HHHh
Confidence 5444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.9e-27 Score=250.33 Aligned_cols=487 Identities=11% Similarity=-0.012 Sum_probs=347.4
Q ss_pred HHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcC
Q 044352 17 DCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTG 92 (544)
Q Consensus 17 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 92 (544)
...+..+...|++++|.+.|+.+++. |++.......+.......|+.++|+..|+++. |.++..+..+...+...|
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 44556778889999999999999888 55544122222222334588999999998887 556667888888888889
Q ss_pred CHHHHHHHHHHHHhccc------------------c--------------cCHHHH---------------------HHH
Q 044352 93 NFQEAIGYFSLMREFIY------------------R--------------CNKFTF---------------------SIV 119 (544)
Q Consensus 93 ~~~~A~~~~~~~~~~~~------------------~--------------p~~~~~---------------------~~l 119 (544)
++++|+..++++.+... . |+...+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999998888754210 0 110000 011
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC--CCh---hhHH-----------
Q 044352 120 LKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE--RDV---VSWT----------- 183 (544)
Q Consensus 120 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~----------- 183 (544)
...+...|++++|...+++.++.. |.+..++..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 234556788888888888888775 55778888888888888999999888888754 221 1121
Q ss_pred -HHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHH------
Q 044352 184 -SMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMI------ 256 (544)
Q Consensus 184 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------ 256 (544)
.....+.+.|++++|...|++..... +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 12345667888888888888888764 3445666777888888888888888888887653 22233333222
Q ss_pred ------------------------------------HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 044352 257 ------------------------------------SGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSI 300 (544)
Q Consensus 257 ------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (544)
..+...|++++|++.|++.++.. +-+...+..+...+...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33445677777777777776543 23455566667777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc----cH---------HHHHHHHHHHHhcCChH
Q 044352 301 QIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK----NV---------ASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~g~~~ 367 (544)
++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 77777777776654 224444444555566677777777777766531 11 11233456677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 368 SSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
+|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|.+.++.+
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888772 3556677888889999999999999999999874 4566888999999999999999999999987
Q ss_pred C-CC-CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 448 P-MY-VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP------DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 448 ~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
. .. .+...+..++.++...|++++|.+.++++++..|+++ ..+..++.++...|++++|+..|++++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 23 3456777788889999999999999999999876554 3566779999999999999999999974
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.4e-25 Score=228.88 Aligned_cols=494 Identities=9% Similarity=-0.055 Sum_probs=327.9
Q ss_pred cCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhH
Q 044352 6 FPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFML 81 (544)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 81 (544)
+..+|.++.++..++..+...|+.++|...++++++. |.|.. .+..+... +++++|...++++. |.+...+
T Consensus 71 l~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~-~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~ 145 (987)
T PRK09782 71 HQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR-LERSLAAI----PVEVKSVTTVEELLAQQKACDAVP 145 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH-HHHHHHHh----ccChhHHHHHHHHHHhCCCChhHH
Confidence 3445556666666666666666666666666666666 33333 33333222 66666666666665 3334444
Q ss_pred HHHHHH--------HHhcCCHHHHHHHHHHHHhcccccCHHHHHHH-HHHhhCCCChHHHHHHHHHHHHcCCCCChhHHH
Q 044352 82 NWMVMA--------SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV-LKACVGLLDIKKGKQVHAVATQMGFENDVSVGN 152 (544)
Q Consensus 82 ~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 152 (544)
..+... |.+. ++|...++ .......|+....... .+.|.+.++++.|+.++..+.+.+ +.+.....
T Consensus 146 ~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~ 220 (987)
T PRK09782 146 TLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERR 220 (987)
T ss_pred HHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 444443 3333 33443343 2222233344444444 778888899999999999998886 55566667
Q ss_pred HHHHHHHh-CCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCC-CCHhhH-------------
Q 044352 153 ALIDMYSK-CGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLE-PNQFTY------------- 217 (544)
Q Consensus 153 ~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------- 217 (544)
.|..+|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|..+++++...-.. |...++
T Consensus 221 ~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~ 299 (987)
T PRK09782 221 QWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ 299 (987)
T ss_pred HHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh
Confidence 77777777 366 88888877655677888889999999999999999988887543211 333332
Q ss_pred -----------------HHHHHH---------------------------------------------------------
Q 044352 218 -----------------NAIIAS--------------------------------------------------------- 223 (544)
Q Consensus 218 -----------------~~l~~~--------------------------------------------------------- 223 (544)
-.++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l 379 (987)
T PRK09782 300 ALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRL 379 (987)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHH
Confidence 000112
Q ss_pred ------HHhcCChHHHHHHHHHhhhC--CCCCCHhHHHHHHHHHHcCCC---HHHHHHH---------------------
Q 044352 224 ------YARRGDSNAAFAFFSRMTAE--GFVPDLVTWNAMISGFAQSKR---ENEALKL--------------------- 271 (544)
Q Consensus 224 ------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~--------------------- 271 (544)
....|+.++|.++|+..... +..++......++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 22344455555555554431 012223333345555555544 2222222
Q ss_pred -HHHHHHc-CC-CC--CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044352 272 -FKGMLVS-GI-KP--NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR 346 (544)
Q Consensus 272 -~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 346 (544)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111110 11 22 34455555555554 67778888777776654 444444445555678999999999998766
Q ss_pred C--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHH
Q 044352 347 I--KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHY 424 (544)
Q Consensus 347 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (544)
. ++...+..+..++...|++++|...+++.++.. +++...+..+...+...|++++|...+++..+. .|+...+
T Consensus 537 ~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~ 612 (987)
T PRK09782 537 LHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAY 612 (987)
T ss_pred ccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHH
Confidence 4 344556677788889999999999999998863 334444444455556779999999999999864 5678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
..++.++.+.|++++|...++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++...|+
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999874 445567888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 044352 503 WHEAENLRKIMKEKN 517 (544)
Q Consensus 503 ~~~A~~~~~~~~~~~ 517 (544)
+++|+..++++++..
T Consensus 693 ~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 693 MAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-25 Score=202.28 Aligned_cols=464 Identities=11% Similarity=0.064 Sum_probs=365.7
Q ss_pred hhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044352 28 ALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLM 104 (544)
Q Consensus 28 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 104 (544)
....+-.+.++..+.+.... ....++.-.-+.|++.+|++.-.-+- +.+....-.+-..+.+..+++....--...
T Consensus 30 ~s~~s~~v~qq~~~t~~~~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a 108 (966)
T KOG4626|consen 30 SSSGSSSVLQQFNKTHEGSD-DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLA 108 (966)
T ss_pred ccccchHHHHHhccCCccch-hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhh
Confidence 44445556666666533444 45667777778899999988765554 222333333445566666666655544444
Q ss_pred HhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCCh--hhH
Q 044352 105 REFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDV--VSW 182 (544)
Q Consensus 105 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~ 182 (544)
.+. .+.-..+|..+...+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|....+-|+ ...
T Consensus 109 ~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 109 IRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 442 23356788889999999999999999999998875 55678888899999999999999999988876444 332
Q ss_pred H-HHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HhHHHHHHHHHH
Q 044352 183 T-SMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD-LVTWNAMISGFA 260 (544)
Q Consensus 183 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 260 (544)
. .+...+-..|+..+|...|.+..+.. +-=...|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 2 33344445789999999998887652 223557888888999999999999999999876 444 567888999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 261 QSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
..+.+++|+..|.+.... .|+ ...+..+...|..+|+.+.|+..+++..+.. +.-+.+|+.+..++-..|++.+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHH
Confidence 999999999999998854 555 4567777788899999999999999999875 335779999999999999999999
Q ss_pred HHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 044352 340 TLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN-EVTLISVLSACSHGGLVEKGLEIFRSMKERY 415 (544)
Q Consensus 340 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (544)
+.+.+... ....+.+.|...|...|.+++|..+|....+ +.|. ....+.+...|-+.|++++|+..|++..+
T Consensus 341 ~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 341 DCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 99998774 3456889999999999999999999999988 4554 45788999999999999999999999985
Q ss_pred CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 416 GVKIS-KEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 416 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
+.|+ ...|+.++..|-..|+.+.|.+.+.++. ..|. ..++..++..|...|+..+|+..|++++++.|+.|.++..
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 4555 6789999999999999999999999875 4444 6689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHH
Q 044352 493 LSNICAADGEWHE 505 (544)
Q Consensus 493 l~~~~~~~g~~~~ 505 (544)
++.++.--.+|.+
T Consensus 496 llh~lq~vcdw~D 508 (966)
T KOG4626|consen 496 LLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHhcccc
Confidence 9877655544443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.8e-22 Score=203.94 Aligned_cols=490 Identities=8% Similarity=-0.041 Sum_probs=355.9
Q ss_pred cCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHH--------hhcCCChHHHHHHhccCCCC
Q 044352 6 FPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGV--------YAGCGDVNSARLVFDKIPNP 76 (544)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~ 76 (544)
+..+|.+...+..+. ..+++.+|..+++++++. |.+.. ++..++.. |.+.++...+++ .+..++
T Consensus 105 v~ldP~n~~~~~~La----~i~~~~kA~~~ye~l~~~~P~n~~-~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 105 LKRHPGDARLERSLA----AIPVEVKSVTTVEELLAQQKACDA-VPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HhcCcccHHHHHHHH----HhccChhHHHHHHHHHHhCCCChh-HHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 344554444444442 229999999999999999 66677 88888887 777777777777 333333
Q ss_pred --CchhHHHH-HHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCCCChhHHH
Q 044352 77 --NVFMLNWM-VMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG-LLDIKKGKQVHAVATQMGFENDVSVGN 152 (544)
Q Consensus 77 --~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 152 (544)
++...... ...|.+.|++++|+.++.++.+.+.. +......+..+|.. .++ +.+..++.. .+..+.....
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 34444544 88999999999999999999987533 34445566667766 366 777776442 2346778888
Q ss_pred HHHHHHHhCCCHHHHHHHHhhccC-----CChhh------------------------------HHHHHHH---------
Q 044352 153 ALIDMYSKCGLLCSARRVFHGMFE-----RDVVS------------------------------WTSMISG--------- 188 (544)
Q Consensus 153 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~------------------------------~~~l~~~--------- 188 (544)
.++..|.+.|+.++|...++++.. ++..+ ...++..
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 899999999999999988887722 00000 0000111
Q ss_pred ------------------------------------------------------HhccCChhHHHHHHHHHHHc--CCCC
Q 044352 189 ------------------------------------------------------YCNVSKVDEAVVLFERMKLE--GLEP 212 (544)
Q Consensus 189 ------------------------------------------------------~~~~~~~~~a~~~~~~~~~~--~~~~ 212 (544)
..+.|+.++|..+|+..... ...+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 22345555555555555431 1122
Q ss_pred CHhhHHHHHHHHHhcCC---hHHHHHH-------------------------HHHhhhCCCCC--CHhHHHHHHHHHHcC
Q 044352 213 NQFTYNAIIASYARRGD---SNAAFAF-------------------------FSRMTAEGFVP--DLVTWNAMISGFAQS 262 (544)
Q Consensus 213 ~~~~~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~ 262 (544)
+.....-++..|.+.+. ..++..+ +...... -++ +...|..+..++..
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-
Confidence 23333466677776655 3333222 1111111 133 66778888888877
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044352 263 KRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLF 342 (544)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 342 (544)
+++++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999988888765 466555545556667899999999999997665 334445667788889999999999999
Q ss_pred HhcCCccHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC
Q 044352 343 EITRIKNVA---SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKI 419 (544)
Q Consensus 343 ~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 419 (544)
+.....++. .+..+.......|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++.... .|.
T Consensus 566 ~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd 641 (987)
T PRK09782 566 QQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPN 641 (987)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 887754333 3333333444569999999999999985 677889999999999999999999999999873 456
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+...+..++.++...|++++|+..++++. .+.++..+..++.++...|++++|+..++++++++|++..+....+++.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 67888999999999999999999999874 4556788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCC
Q 044352 498 AADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~~ 518 (544)
.+..+++.|.+.+++....++
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999988776554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-23 Score=190.92 Aligned_cols=425 Identities=11% Similarity=0.090 Sum_probs=349.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
...+..-..+.|++++|++.-...-+.+. .+......+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44566667789999999998877766432 233334444455666666666555544444443 5567889999999999
Q ss_pred CCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChHHHHHH
Q 044352 161 CGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY-NAIIASYARRGDSNAAFAF 236 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~ 236 (544)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.... +.+...+-..|++.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999866 34678999999999999999999999998865 5654433 3445555668999999999
Q ss_pred HHHhhhCCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcC
Q 044352 237 FSRMTAEGFVPD-LVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTGSIQIGREIHALVCRMG 314 (544)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (544)
|.+.... .|. ...|+.|...+..+|+...|+..|++..+. .|+ ...|..+...|...+.++.|...+.+.....
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9887765 443 467899999999999999999999999854 454 4578899999999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 315 LHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--KN-VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISV 391 (544)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 391 (544)
+....++-.+...|...|.++.|+..+++... |+ +..|+.|..++...|++.+|...|.+.+.. .+.-....+.+
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NL 360 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNL 360 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHH
Confidence 33566777788889999999999999998875 43 458999999999999999999999999985 23346688999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCCh
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRR 469 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~ 469 (544)
...+...|.++.|..+|....+ -.+--....+.|...|-.+|++++|+..|+++. +.|. ..++..++..|-..|+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999999876 234446778999999999999999999999874 5665 56899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 470 DLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+.|+..|.+++..+|.-.+++..|+.+|-..|+..+|++-|+.+++..
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999998754
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.3e-22 Score=202.31 Aligned_cols=422 Identities=12% Similarity=-0.004 Sum_probs=300.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
+......+.+.|++++|+..|++.+. +.|+...|..+..++...|++++|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45667788889999999999999987 56788888888899999999999999999999875 5567788889999999
Q ss_pred CCCHHHHHHHHhhccCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044352 161 CGLLCSARRVFHGMFERD---VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFF 237 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (544)
.|++++|...|..+...+ ......++..+.. ..+........+.. +++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999988776553311 1111111111111 12222233322221 222222222222 22111111111111
Q ss_pred HHhhhCCCCCCH-hHHHHHHHH---HHcCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 044352 238 SRMTAEGFVPDL-VTWNAMISG---FAQSKRENEALKLFKGMLVSG-IKP-NNVTVTGVLQAGGLTGSIQIGREIHALVC 311 (544)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (544)
....+. .+.. ..+..+... ....+++++|.+.|+..++.+ ..| ....+..+...+...|++++|...++...
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 1111 111111111 123578999999999998764 223 34567777778888999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044352 312 RMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTL 388 (544)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 388 (544)
+.. +.....+..+..++...|++++|...|+.... .+...|..+...+...|++++|+..|++.++.. +.+...+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 875 33566788888899999999999999987653 457789999999999999999999999999862 4466778
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhH-------HHHH
Q 044352 389 ISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSM-------AGAF 459 (544)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~-------~~~l 459 (544)
..+..++.+.|++++|+..+++..+ ..+.+...+..++.++...|++++|.+.|+++. ..|+ ... +...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8888899999999999999999987 445667889999999999999999999998863 2222 111 1112
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
...+...|++++|..+++++++++|++..++..++.++...|++++|+.+|++..+..
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2233446999999999999999999999999999999999999999999999987653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-21 Score=185.42 Aligned_cols=489 Identities=12% Similarity=0.041 Sum_probs=267.3
Q ss_pred HHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcC---CChHHHHHHhccCC---CCCchhHHHHHHHHHhcCC
Q 044352 21 GKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGC---GDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGN 93 (544)
Q Consensus 21 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 93 (544)
..+.+.|+.+.|+..|..+++. |.+.. ++-.|+..-... ..+..+..++...- +.|+...+.|...+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~-alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVS-ALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHH-HHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 3344555555555555555555 22222 333333222222 22233333333322 3444455555555555555
Q ss_pred HHHHHHHHHHHHhcccc--cCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhCCCHHHHHH
Q 044352 94 FQEAIGYFSLMREFIYR--CNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV--SVGNALIDMYSKCGLLCSARR 169 (544)
Q Consensus 94 ~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~ 169 (544)
++.+.++...+...... .-...|-.+.+++-..|++++|...|-+..+.. ++. ..+.-+.+.|.+.|+++.+..
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHH
Confidence 55555555544432100 112234444555555555555555554444432 221 222334444555555555555
Q ss_pred HHhhccC-----------------------------------------CChhhHHHHHHHHhccCChhHHHHHHHHH---
Q 044352 170 VFHGMFE-----------------------------------------RDVVSWTSMISGYCNVSKVDEAVVLFERM--- 205 (544)
Q Consensus 170 ~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 205 (544)
.|+.+.+ .|...|-.+...+... ++..++..|...
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence 5554432 2333444444433332 222224444332
Q ss_pred -HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCH------hHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044352 206 -KLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE---GFVPDL------VTWNAMISGFAQSKRENEALKLFKGM 275 (544)
Q Consensus 206 -~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (544)
...+-.+.+...|.+...+...|++..|...|...... ...++. .+-..+..++-..++++.|.+.|+.+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22333445555566666666666666666666655433 011111 12222445555556666666666666
Q ss_pred HHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----cc
Q 044352 276 LVSGIKPNN-VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----KN 349 (544)
Q Consensus 276 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~ 349 (544)
++. .|.- ..|..++......++..+|...+..+.... ..++.++..+...+.+..++..|..-|+.+.. +|
T Consensus 523 lke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 523 LKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 644 2332 223333323333455666666666666543 33555666666666666666666664443332 34
Q ss_pred HHHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCC
Q 044352 350 VASWNAMIGCYGK------------HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGV 417 (544)
Q Consensus 350 ~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (544)
..+.-+|...|.. .+..++|+++|.+.+.. -+.|...-+-+.-+++..|++..|..+|.++.+. .
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~ 676 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--T 676 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--H
Confidence 4454555554432 24566778888887775 2446777777777788888888888888888775 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
.....+|..++.+|..+|++-.|+++|+... ...+......|+.++...|.+.+|.+.+..++...|.|+.....+
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 3355678888888888888888888887753 344666777788888888888888888888888888888877777
Q ss_pred HHHHHhc-------------------CChHHHHHHHHHHHhcCCC
Q 044352 494 SNICAAD-------------------GEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 494 ~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 519 (544)
+.+..+. +..++|.++|..+...+-.
T Consensus 757 a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 757 ALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7655443 3566777777777765543
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-21 Score=184.77 Aligned_cols=503 Identities=13% Similarity=0.044 Sum_probs=332.8
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc----ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHH
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN----DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLN 82 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (544)
..+|++--.+..-+......|++..|+.+|..++.. ++++. ..++.++.++|+.+.|+..|+++..-|+..-+
T Consensus 158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~ 234 (1018)
T KOG2002|consen 158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLDPTCVS 234 (1018)
T ss_pred hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcChhhHH
Confidence 344554445555555556888999999999998888 44443 55677888999999999999998855544333
Q ss_pred H---HHHHHHhc---CCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCC--CChhHHHHH
Q 044352 83 W---MVMASAFT---GNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFE--NDVSVGNAL 154 (544)
Q Consensus 83 ~---l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 154 (544)
. |...-... ..+..++.++...-..+ .-++...+.|...+.-.|+++.+..+...+...... .-...|-.+
T Consensus 235 alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 235 ALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3 33322233 34556777777665543 237778888999999999999999999998876421 223457789
Q ss_pred HHHHHhCCCHHHHHHHHhhccCC--C--hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--
Q 044352 155 IDMYSKCGLLCSARRVFHGMFER--D--VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRG-- 228 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 228 (544)
.++|...|++++|...|....+. + +..+.-+...+.+.|+.+.+...|+...... +-+..+...+...|...+
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 99999999999999999888663 2 2345567788999999999999999887653 444556666666665543
Q ss_pred --ChHHHHHHHHHhhhC-------------------------------------CCCCCHhHHHHHHHHHHcCCCHHHHH
Q 044352 229 --DSNAAFAFFSRMTAE-------------------------------------GFVPDLVTWNAMISGFAQSKRENEAL 269 (544)
Q Consensus 229 --~~~~a~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (544)
..+.|..++.+..+. +-.+.+...|.+...+...|++.+|.
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 334444444444333 22233334444444444555555555
Q ss_pred HHHHHHHHc---CCCCCH------HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044352 270 KLFKGMLVS---GIKPNN------VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDART 340 (544)
Q Consensus 270 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 340 (544)
..|+..... ...++. .+-..+..+.-..++++.|.+.|..+.+.. +.-+..|..++.+....+...+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 555554432 011111 122233333444445555555555555443 1122333333323333455556666
Q ss_pred HHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------CCchHHH
Q 044352 341 LFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEG-MRANEVTLISVLSACSH------------GGLVEKG 404 (544)
Q Consensus 341 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a 404 (544)
.+..+.. .++..+..+...+.....+..|.+-|+...+.- ..+|..+...|...|.. .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 6655442 455666666667777777777777666655432 23455666666665542 2356788
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044352 405 LEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
+++|.++.+ ..|-+...-+.++-+++..|++.+|.++|.++. ......+|.+++.+|...|++..|++.|+..++.
T Consensus 632 lq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876 456677777888889999999999999998875 2335678899999999999999999999999886
Q ss_pred C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 483 G--LRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 483 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
. .+++.++..|+.++.+.|.+.+|.+.+.......
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 5 4567889999999999999999999887776543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.2e-20 Score=189.84 Aligned_cols=256 Identities=12% Similarity=0.003 Sum_probs=170.1
Q ss_pred cCChHHHHHHHHHhhhCC-C-CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHH
Q 044352 227 RGDSNAAFAFFSRMTAEG-F-VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGR 304 (544)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (544)
.+++++|.+.|+...+.+ . +.....|..+...+...|++++|+..|++.++.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 355666666666666543 1 2233455556666666677777777766666442 222445555666666666777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044352 305 EIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGM 381 (544)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 381 (544)
..++.+.+.. +.+..++..+...+...|++++|...|++... .+...+..+..++.+.|++++|+..+++.+.. .
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-F 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 7766666654 33566677777777778888888887776653 34556777777888888888888888888775 2
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc-hh-------HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-
Q 044352 382 RANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS-KE-------HYACVVDMLCRSGRMVEAYDLLRQVP-MYV- 451 (544)
Q Consensus 382 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 451 (544)
+.+...+..+..++...|++++|+..|++..+. .|+ .. .+......+...|++++|.++++++. ..|
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 445677788888888888888888888887653 221 11 11112223344688888988888753 333
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
+...+..++..+...|++++|+.+|+++.++.+....
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3456778888888999999999999999888775443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.5e-20 Score=190.89 Aligned_cols=403 Identities=9% Similarity=-0.008 Sum_probs=234.5
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 044352 76 PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALI 155 (544)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 155 (544)
.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. |.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344445555666677777777777777776521 2344456667777777777777777777777663 44555666666
Q ss_pred HHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 044352 156 DMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNA 232 (544)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (544)
.++...|++++|...++++.+ .+.. +..+..++...|++++|+..++++.+.. +.+...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 677777777777777776643 2334 6666666667777777777777766553 2233444455556666666666
Q ss_pred HHHHHHHhhhCCCCCCH------hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch---HHH
Q 044352 233 AFAFFSRMTAEGFVPDL------VTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSI---QIG 303 (544)
Q Consensus 233 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a 303 (544)
|++.++.... .|+. .....++......+. ...+++ +.|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHH
Confidence 7766665543 2221 001111111111000 011111 334
Q ss_pred HHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHhcCCcc---HH-HHHHHHHHHHhcCChHHHHHHH
Q 044352 304 REIHALVCRM-GLHIDVF-TG----SALIDMYSKCGSLKDARTLFEITRIKN---VA-SWNAMIGCYGKHGMVDSSIELF 373 (544)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~A~~~~ 373 (544)
...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+...+ +. ....+..+|...|++++|+..|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444332 1111110 00 011223345566666666666665421 11 1122355666677777777777
Q ss_pred HHHHHcCCCCC-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC----------CCCc---hhHHHHHHHHHHhcC
Q 044352 374 ERMLEEGMRAN-----EVTLISVLSACSHGGLVEKGLEIFRSMKERYG----------VKIS---KEHYACVVDMLCRSG 435 (544)
Q Consensus 374 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g 435 (544)
+++.... |. ......+..++...|++++|..+++.+.+... ..|+ ...+..++..+...|
T Consensus 296 ~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 296 TELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 7766532 21 23344555566677777777777777665310 0112 123445666777778
Q ss_pred CHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 436 RMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 436 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
++++|+++++++. .+.+...+..++..+...|++++|+..++++++++|+++..+..++..+.+.|++++|...++++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888887763 34456677777777888888888888888888888888888888888888888888888888887
Q ss_pred HhcC
Q 044352 514 KEKN 517 (544)
Q Consensus 514 ~~~~ 517 (544)
++..
T Consensus 454 l~~~ 457 (765)
T PRK10049 454 VARE 457 (765)
T ss_pred HHhC
Confidence 7643
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.2e-21 Score=185.74 Aligned_cols=305 Identities=14% Similarity=0.117 Sum_probs=198.0
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HhHHHHHHHHHHcCCC
Q 044352 188 GYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD---LVTWNAMISGFAQSKR 264 (544)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 264 (544)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666542 22334555555666666666666666666554321111 1344555555666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 265 ENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEI 344 (544)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 344 (544)
+++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 666666666655431 22334444444444444555544444444443321110000
Q ss_pred cCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHH
Q 044352 345 TRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHY 424 (544)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (544)
....+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+. +.......+
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 01134556667778888888888888888752 334567777888888899999999999988764 222224567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---c
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA---D 500 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~ 500 (544)
..++.+|...|++++|...++++. ..|+...+..++..+.+.|++++|..+++++++..|+++. +..+...+.. .
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~ 331 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCC
Confidence 788889999999999999998864 4566666788888999999999999999999999997664 4444444443 5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCc
Q 044352 501 GEWHEAENLRKIMKEKNVQKQPGF 524 (544)
Q Consensus 501 g~~~~A~~~~~~~~~~~~~~~~~~ 524 (544)
|+.++|+..++++.+++++++|.+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCCE
Confidence 699999999999999999988863
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.5e-19 Score=185.19 Aligned_cols=412 Identities=8% Similarity=-0.004 Sum_probs=276.6
Q ss_pred HHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 044352 34 QVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN---PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIY 109 (544)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (544)
..++. .+. +.++. ...-.+.+....|+.++|++++....+ .+...+..+...+...|++++|+.+|++.++..
T Consensus 3 ~~~~~-~~~~~~~~~-~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~- 79 (765)
T PRK10049 3 SWLRQ-ALKSALSNN-QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE- 79 (765)
T ss_pred hhhhh-hhccCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 34445 323 55555 667788888899999999999998763 444568999999999999999999999998842
Q ss_pred ccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHH
Q 044352 110 RCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMI 186 (544)
Q Consensus 110 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 186 (544)
+.+...+..+...+...|++++|...++++.+.. |.+.. +..+..++...|+.++|...++++.+ .+...+..+.
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345667788888899999999999999999884 56666 88899999999999999999999965 3455667778
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCCHh------hHHHHHHHHHhc-----CCh---HHHHHHHHHhhhC-CCCCCHh-
Q 044352 187 SGYCNVSKVDEAVVLFERMKLEGLEPNQF------TYNAIIASYARR-----GDS---NAAFAFFSRMTAE-GFVPDLV- 250 (544)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~-----~~~---~~a~~~~~~~~~~-~~~~~~~- 250 (544)
.++...+..++|+..++.... .|+.. ....++...... +++ ++|++.++.+.+. ...|+..
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 888889999999999887653 33310 111112221111 112 4455555555432 1111111
Q ss_pred HHH----HHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 251 TWN----AMISGFAQSKRENEALKLFKGMLVSGIK-PNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSAL 325 (544)
Q Consensus 251 ~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (544)
.+. ..+..+...|++++|+..|+.+.+.+.+ |+ .....+
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~------------------------------------~a~~~l 278 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP------------------------------------WAQRWV 278 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH------------------------------------HHHHHH
Confidence 100 0022233445555555555555543311 11 111123
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCcc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH--
Q 044352 326 IDMYSKCGSLKDARTLFEITRIKN-------VASWNAMIGCYGKHGMVDSSIELFERMLEEG-----------MRANE-- 385 (544)
Q Consensus 326 ~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~-- 385 (544)
..+|...|++++|+.+|+.+...+ ......+..++...|++++|..+++++.... ..|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 444555555555555555443211 1233444445566666666666666665531 12332
Q ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHH
Q 044352 386 -VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV-TNSMAGAFRNG 462 (544)
Q Consensus 386 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 462 (544)
..+..+...+...|++++|+..++++.. ..|.+...+..++..+...|++++|++.++++. ..| +...+...+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3455667778889999999999999877 456667888899999999999999999999874 334 46677777778
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
+...|++++|+..++++++..|+++.+..
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88999999999999999999999886544
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3e-20 Score=186.15 Aligned_cols=312 Identities=10% Similarity=-0.021 Sum_probs=175.9
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHH
Q 044352 187 SGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKREN 266 (544)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 266 (544)
.+....|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChH
Confidence 33334444444444444444332 2223334444444444455555555554444331 223344444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044352 267 EALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR 346 (544)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 346 (544)
+|...++.+..... .+...+.. +..+...|++++|...++.+.+....++......+...+...|++++|...++...
T Consensus 162 eA~~~~~~~~~~~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 162 QAISLARTQAQEVP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555544443321 11111111 12234445555555555544443322222333334455556666666666666544
Q ss_pred C---ccHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC
Q 044352 347 I---KNVASWNAMIGCYGKHGMVDS----SIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKI 419 (544)
Q Consensus 347 ~---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 419 (544)
. .+...+..+...+...|++++ |...+++..... +.+..++..+...+...|++++|...++++.+. .+.
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~ 316 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPD 316 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 3 244556666677777777764 777888877752 335667777788888888888888888887763 344
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNS-MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+...+..++.+|.+.|++++|...++++. ..|+.. .+..++.++...|++++|+..|+++++.+|++.
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~---------- 386 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL---------- 386 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc----------
Confidence 45667777888888888888888887764 344433 333455677888888888888888888888754
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...+++|...+....+.-
T Consensus 387 --~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 387 --PQSFEEGLLALDGQISAV 404 (656)
T ss_pred --hhhHHHHHHHHHHHHHhc
Confidence 244456666666666543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.2e-20 Score=185.12 Aligned_cols=353 Identities=12% Similarity=-0.031 Sum_probs=284.4
Q ss_pred HhCCCHHHHHHHHhhccC------CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 044352 159 SKCGLLCSARRVFHGMFE------RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNA 232 (544)
Q Consensus 159 ~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (544)
.++.+++.-.-+|....+ .+......++..+.+.|++++|..++......... +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 345556555555554433 23334556777888999999999999999877433 34455556677778999999
Q ss_pred HHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 044352 233 AFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCR 312 (544)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (544)
|...|+++.... +.+...+..+...+.+.|++++|...++++.... +.+...+..+..++...|++++|...+..+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998874 5567788889999999999999999999999753 44566788889999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044352 313 MGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTL 388 (544)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 388 (544)
.... +...+..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.... +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6543 33444343 3478899999999999886643 23344556778889999999999999999863 4467788
Q ss_pred HHHHHHHhcCCchHH----HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 389 ISVLSACSHGGLVEK----GLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 389 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
..+...+...|++++ |...++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..++.+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 889999999999986 89999999873 45567889999999999999999999999874 34456678888899
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
+...|++++|+..++++++.+|.++..+..++.++...|++++|+..|+++++....
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999999998877777899999999999999999999876544
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=4.3e-18 Score=156.52 Aligned_cols=507 Identities=11% Similarity=0.007 Sum_probs=414.2
Q ss_pred ccccCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCc
Q 044352 3 RLIFPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNV 78 (544)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 78 (544)
|.++.+.|.|...+-..+. ..+.+.|+-++.++++- |.+.. .+.++ ++...++.|..++.+.. +.+.
T Consensus 370 RKALe~iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s~d-LwlAl----arLetYenAkkvLNkaRe~iptd~ 440 (913)
T KOG0495|consen 370 RKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVECCPQSMD-LWLAL----ARLETYENAKKVLNKAREIIPTDR 440 (913)
T ss_pred HHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHhccchHH-HHHHH----HHHHHHHHHHHHHHHHHhhCCCCh
Confidence 4456666666666655544 34555688888888888 77777 55544 45566778888776654 7888
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----HhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCC--ChhHHH
Q 044352 79 FMLNWMVMASAFTGNFQEAIGYFSLM----REFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFEN--DVSVGN 152 (544)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 152 (544)
..|-+-...--.+|+.+....++.+- ...|+..+...|..=...|-..|..-.+..+....+..|+.. -..+|.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 89988888888899988888887664 455788888888888888988899988999998888887643 346788
Q ss_pred HHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 044352 153 ALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD 229 (544)
Q Consensus 153 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 229 (544)
.-...|.+.+.++-|..+|....+ .+...|......--..|..++...+|.+....- +-....|......+-..|+
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCC
Confidence 888889999999999999988766 455677777766667899999999999998762 3444555556667777899
Q ss_pred hHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 044352 230 SNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHAL 309 (544)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (544)
+..|..++....+.. +.+...|..-+.....+.+++.|..+|.+... ..|+...|..-+......++.++|.+++++
T Consensus 600 v~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 600 VPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 999999999988774 44778899999999999999999999999885 478888888888888889999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044352 310 VCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--K-NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEV 386 (544)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 386 (544)
..+.- +.-...|..+.+.+.+.++.+.|...|....+ | .+..|-.|...--+.|..-+|..++++..-.+ +-+..
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~ 754 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNAL 754 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcch
Confidence 88763 44567888999999999999999999987775 3 45678888888888999999999999998874 66888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhc
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIH 466 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (544)
.|...+..-.+.|+.+.|..+..+..+ .++.+...|..-+....+.++-....+.+++.. .|+.....++..+...
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSE 830 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence 999999999999999999999999988 567778888888888888888888888888774 4666677788889999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEec
Q 044352 467 GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKR 530 (544)
Q Consensus 467 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 530 (544)
.++++|+++|+++++.+|++.++|...-..+.+.|.-+.-.++++++... +|.-|..|+-+.
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999999999999999999999999998764 456666776543
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2e-20 Score=179.03 Aligned_cols=299 Identities=13% Similarity=0.059 Sum_probs=222.1
Q ss_pred HHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC-CC------chhHHHHHHH
Q 044352 16 LDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN-PN------VFMLNWMVMA 87 (544)
Q Consensus 16 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~ 87 (544)
.+.....+...|+++.|...+.++++. |.+.. ++..++..+...|++++|...++.+.. ++ ...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVE-LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 333445566778888899999998888 65666 888888888888999999888887662 11 2456777888
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhCCC
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFEND----VSVGNALIDMYSKCGL 163 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 163 (544)
+...|++++|+.+|+++.+.. +++..++..++..+...|++++|...++.+.+.+..+. ...+..+...+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 888889999998888888642 34566788888888888888888888888887652221 1234556677788888
Q ss_pred HHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 044352 164 LCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRM 240 (544)
Q Consensus 164 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (544)
+++|...|+++.+ .+...+..+...+.+.|++++|.++|+++...+......++..++..|...|++++|...++++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888754 2345677777888888888888888888876532222456777888888888888888888888
Q ss_pred hhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc---cCchHHHHHHHHHHHHcCCCC
Q 044352 241 TAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL---TGSIQIGREIHALVCRMGLHI 317 (544)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~ 317 (544)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.+
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 776 466666677888888888888888888888765 5777777776666553 457778888888887766555
Q ss_pred CHH
Q 044352 318 DVF 320 (544)
Q Consensus 318 ~~~ 320 (544)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.9e-18 Score=172.19 Aligned_cols=431 Identities=8% Similarity=-0.002 Sum_probs=253.2
Q ss_pred HHHhhcCCChHHHHHHhccCCC--CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChH
Q 044352 54 VGVYAGCGDVNSARLVFDKIPN--PNV-FMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIK 130 (544)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 130 (544)
+-...+.|+++.|+..|+++.. |+. .....++..+...|+.++|+..+++.... ..........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3334455555555555555441 111 11224444444555555555555555410 0111112222233444555555
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChh--hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044352 131 KGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVV--SWTSMISGYCNVSKVDEAVVLFERMKLE 208 (544)
Q Consensus 131 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (544)
+|..+++.+.+.. |.++..+..++..+...++.++|+..++++.+.++. .+..++..+...++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 5555555555543 333444444555555555555555555555443222 2222222222234444466666666555
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHH------HHHHHHH---H--cCC---CHHHHHHHHHH
Q 044352 209 GLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTW------NAMISGF---A--QSK---RENEALKLFKG 274 (544)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~---~~~~a~~~~~~ 274 (544)
. +-+...+..+...+.+.|-...|.++..+-...- .+....+ ..+++.- . ... -.+.|+.-++.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 2 2334444555555566666655555554432110 0100000 0000000 0 111 23456666666
Q ss_pred HHHc-CCCCCH-----HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc
Q 044352 275 MLVS-GIKPNN-----VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK 348 (544)
Q Consensus 275 ~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 348 (544)
+... +..|.. ......+.++...+++.++++.++.+...+.+....+-..+..+|...++.++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5542 112321 2233456677788888999999998888876666778888889999999999999999877532
Q ss_pred ---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHhcCCchHHHH
Q 044352 349 ---------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-----------RANE---VTLISVLSACSHGGLVEKGL 405 (544)
Q Consensus 349 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~ 405 (544)
+......|.-++...+++++|..+++++.+... .||+ ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 222346788888889999999999999887311 1222 23445566778899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 406 EIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
+.++++.. .-|-|......+...+...|.+.+|.+.++.+. .+.+..+....+.++...+++++|..+.+.+++..
T Consensus 437 ~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999976 457788888889999999999999999997753 34455667777778888899999999999999999
Q ss_pred CCCchhH
Q 044352 484 LRKPDGF 490 (544)
Q Consensus 484 p~~~~~~ 490 (544)
|+++.+-
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9888554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=6.7e-18 Score=169.57 Aligned_cols=433 Identities=9% Similarity=-0.030 Sum_probs=319.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCH--HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 044352 77 NVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNK--FTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNAL 154 (544)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 154 (544)
.+.+-..-+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|..++++.... -+........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 3444444555678999999999999999984 4554 234 7788888889999999999999821 12333344444
Q ss_pred HHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSN 231 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (544)
...+...|++++|.++++++.+ .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 6789999999999999999966 34566777788899999999999999999866 566666655555555566776
Q ss_pred HHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHh-----hccCch
Q 044352 232 AAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNV------TVTGVLQAG-----GLTGSI 300 (544)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~-----~~~~~~ 300 (544)
+|++.++++.+.. +.+...+..+..++.+.|-...|.++.++-... +.+... .....++.- ....++
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7999999999884 456778888899999999999999877653211 111110 011111111 112233
Q ss_pred H---HHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHhcCCc----cHHHHHHHHHHHHhcCChH
Q 044352 301 Q---IGREIHALVCRM-GLHIDV-F----TGSALIDMYSKCGSLKDARTLFEITRIK----NVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 301 ~---~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 367 (544)
. .+..-++.+... +..|.. . +..-.+-++...|++.++++.++.+... ...+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 3 344444444432 111221 1 2223455778899999999999999853 3346678899999999999
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC----------CCCch---hHHHHHHH
Q 044352 368 SSIELFERMLEEG-----MRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG----------VKISK---EHYACVVD 429 (544)
Q Consensus 368 ~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~ 429 (544)
+|..+|+.+.... .+++......|..++...+++++|..+++++.+... -.|+. ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999997743 122344467889999999999999999999987311 01221 23344577
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 507 (544)
.+...|++.+|.+.++++. .+-+......++..+...|.+.+|+..++.+..++|++..+....+.++...|+|++|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 7889999999999999984 56678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 044352 508 NLRKIMKEKN 517 (544)
Q Consensus 508 ~~~~~~~~~~ 517 (544)
.+.+.+.+..
T Consensus 505 ~~~~~l~~~~ 514 (822)
T PRK14574 505 LLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhC
Confidence 9988876543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=5.1e-18 Score=149.54 Aligned_cols=447 Identities=11% Similarity=0.035 Sum_probs=321.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCC----CCchh-HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH----HHHHH
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPN----PNVFM-LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF----TFSIV 119 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l 119 (544)
++..|++-|.....+.+|+..++-+.. ||.-. --.+...+.+..++.+|+..|+..+..-...+.. ..+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 667788888888889999999987762 33322 2234567788899999999999887643222333 34444
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC----------------CChhhHH
Q 044352 120 LKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE----------------RDVVSWT 183 (544)
Q Consensus 120 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~ 183 (544)
...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.++.. |+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 45678999999999999999887 47777666677777788999999999998843 1222222
Q ss_pred H-----HHHHHhccCC--hhHHHHHHHHHHHcCCCCCHhh-------------H--------HHHHHHHHhcCChHHHHH
Q 044352 184 S-----MISGYCNVSK--VDEAVVLFERMKLEGLEPNQFT-------------Y--------NAIIASYARRGDSNAAFA 235 (544)
Q Consensus 184 ~-----l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~~~~a~~ 235 (544)
. .+.-..+.+. .+++.-.-.++..--+.|+-.. + ..-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 2222222221 2222222222222112222110 0 111234678899999999
Q ss_pred HHHHhhhCCCCCCHhHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 044352 236 FFSRMTAEGFVPDLVTWNAMISGFA--QSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (544)
+++-+.+..-......-+.|...+. .-.++..|..+-+..+... ..+......-.......|+++.|...+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998886543333333333333222 2446777877777766433 445555555555566789999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC---CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 314 GLHIDVFTGSALIDMYSKCGSLKDARTLFEITR---IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLIS 390 (544)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 390 (544)
...... ....+.-.+...|++++|+++|-++. ..+..+...+...|-...+..+|++++.+.... ++.++.++..
T Consensus 520 dasc~e-alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTE-ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred chHHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 533333 33344556778999999999997665 467778888899999999999999999988775 6678999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHH-HhhcCC
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNG-CNIHGR 468 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~~~g~ 468 (544)
+...|.+.|+-..|.+++-..-+ -++.+.++..+|...|....-+++|+.+|+++. ..|+..-|..++.. +.+.|+
T Consensus 598 l~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999998776654 578889999999999999999999999999874 78999999888775 567899
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 469 RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
+++|...|+......|.+...+..|..++-..|.
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999999988874
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=2.1e-16 Score=151.20 Aligned_cols=369 Identities=11% Similarity=0.037 Sum_probs=277.1
Q ss_pred cCCCCCCcc--hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCch
Q 044352 6 FPINNLSVN--YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVF 79 (544)
Q Consensus 6 ~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 79 (544)
.+...++++ .+...++.+...|++++|..++.++++. |.+.. +|..|+.+|-..|+.+++...+-.+- |.|..
T Consensus 130 r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~-ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 130 RGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI-AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred CcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh-hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence 334444553 4445566667779999999999999999 66777 99999999999999999998776543 77788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHH----HHH
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGN----ALI 155 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~ 155 (544)
-|..+.......|++.+|.-.|.+.++.. +++...+-.-...|-+.|+...|...+.++.....+.|..-.. ..+
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999864 3355555555677889999999999999999885333333222 345
Q ss_pred HHHHhCCCHHHHHHHHhhccC-----CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhH-------------
Q 044352 156 DMYSKCGLLCSARRVFHGMFE-----RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY------------- 217 (544)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 217 (544)
+.+...++-+.|.+.++.... -+...++.++..+.+...++.+......+......+|..-+
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 667777888999998888755 24457889999999999999999888887762222222211
Q ss_pred -------------HHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 044352 218 -------------NAIIASYARRGDSNAAFAFFSRMTAEGF--VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKP 282 (544)
Q Consensus 218 -------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (544)
..++-++...+..+....+...+.+..+ .-+...|.-+..+|.+.|++..|+.+|..+......-
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 1233344455555555556666666653 3356778889999999999999999999999765555
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccH------------
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNV------------ 350 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------ 350 (544)
+...|..+..++...|.++.|...+..+.... +.+..+-..|...+.+.|+.++|.+.++.+..+|.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 67789999999999999999999999998875 44667777888999999999999999999876652
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERML 377 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 377 (544)
.........+...|+.++-+.+...|+
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 122333445566677666554444443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=2.3e-15 Score=144.15 Aligned_cols=512 Identities=11% Similarity=0.054 Sum_probs=336.5
Q ss_pred cccCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCch
Q 044352 4 LIFPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVF 79 (544)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 79 (544)
+.+..+|..+.+|..|...+-.+|+.+.+...+-.+... |.+.. .|..+.....+.|.++.|+-+|.+++ |++..
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e-~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE-LWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 456788999999999999999999999999888777777 77777 99999999999999999999999988 44544
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH----HHHHHHHHhhCCCChHHHHHHHHHHHHcC-CCCChhHHHHH
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF----TFSIVLKACVGLLDIKKGKQVHAVATQMG-FENDVSVGNAL 154 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 154 (544)
...--+..|-+.|+...|.+.|.++.+...+.|.. .-..+++.+...++-+.|.+.++.....+ -..+...++.+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 55556678889999999999999999864322222 23344566777787799999888877632 23455677888
Q ss_pred HHHHHhCCCHHHHHHHHhhccC----CC----------------------hhhHH----HHHHHHhccCChhHHHHHHHH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFE----RD----------------------VVSWT----SMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~----~~----------------------~~~~~----~l~~~~~~~~~~~~a~~~~~~ 204 (544)
+..+.+...++.|......... +| ..+|. -++-++......+....+...
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 8889999999988877665522 11 11111 122333444444444455555
Q ss_pred HHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 044352 205 MKLEGL--EPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKP 282 (544)
Q Consensus 205 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (544)
+....+ .-+...|.-+..++...|.+.+|+++|..+......-+...|-.+..+|...|.++.|.+.|...+... +.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~ 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PD 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 555553 334556777888888888888898888888877444556788888888888888888888888888653 33
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCR--------MGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR-------- 346 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 346 (544)
+...-..+...+...|+.++|.+.+..+.. .+..|...........+.+.|+.++=..+-..+.
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~ 561 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRY 561 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777888888888888877432 2233444444445555666666554222111000
Q ss_pred --------------------------------Cc-------------------------cH----HHHHHHHHHHHhcCC
Q 044352 347 --------------------------------IK-------------------------NV----ASWNAMIGCYGKHGM 365 (544)
Q Consensus 347 --------------------------------~~-------------------------~~----~~~~~l~~~~~~~g~ 365 (544)
.+ .. ..+..++.++++.++
T Consensus 562 ~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r 641 (895)
T KOG2076|consen 562 IFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQR 641 (895)
T ss_pred hcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHh
Confidence 00 00 123456677888999
Q ss_pred hHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch---hHHHHHHHHH------
Q 044352 366 VDSSIELFERMLEEGM--RANE---VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK---EHYACVVDML------ 431 (544)
Q Consensus 366 ~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~------ 431 (544)
+++|+.+...+..... .++. ..-...+.+++..+++..|...++.+...+++..++ ..|+......
T Consensus 642 ~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 642 VQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887542 2222 123445566778899999999999888764443221 2232111111
Q ss_pred -----------------------------HhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHh----------hcCChH
Q 044352 432 -----------------------------CRSGRMVEAYDLLRQV-PMYVT-NSMAGAFRNGCN----------IHGRRD 470 (544)
Q Consensus 432 -----------------------------~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~----------~~g~~~ 470 (544)
...+.+..|+..+-++ ...|+ |..-..++.++. ++-..-
T Consensus 722 v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~ 801 (895)
T KOG2076|consen 722 VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIA 801 (895)
T ss_pred HHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2234455555444332 12233 222112221221 112344
Q ss_pred HHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 471 LAVTMGEEFFEMGLR--KPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++..++.+..++... .-.++..+|.+|...|-..-|..+|+++++..
T Consensus 802 qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 802 QGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 555555555555432 44788899999999999999999999998654
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.7e-15 Score=132.39 Aligned_cols=457 Identities=13% Similarity=0.067 Sum_probs=346.8
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHh
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAF 90 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 90 (544)
.+...++---.++++..|..+++.++.. ..+.. +|...+.+-.++..+..|+.++++.. |.-...|...+..--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444444677889999999999999 67777 99999999999999999999999987 4444568888877788
Q ss_pred cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRV 170 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 170 (544)
.|+...|.++|++..+ ..|+...|.+.+..-.+-+.++.|..+++..+-. .|+...|......-.++|+...|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999988 6899999999999999999999999999999865 59999999999999999999999999
Q ss_pred HhhccC--C----ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCChHHHHHH-----
Q 044352 171 FHGMFE--R----DVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQ---FTYNAIIASYARRGDSNAAFAF----- 236 (544)
Q Consensus 171 ~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~----- 236 (544)
|+...+ . +...+.++...-..+..++.|.-+|.-.++. -|.. ..|..+...--+-|+.....+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 998865 2 2334555555555677888999898887765 3332 3344333333344554333322
Q ss_pred ---HHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHH---hhccCchHHH
Q 044352 237 ---FSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNV-------TVTGVLQA---GGLTGSIQIG 303 (544)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~---~~~~~~~~~a 303 (544)
++.+++.+ +-|-.+|.-.++.-...|+.+...++|+..+.. ++|-.. +|..+--+ -....|++.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444443 668889998999888999999999999999854 455321 12211111 2356789999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHhcCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 304 REIHALVCRMGLHIDVFTGSAL----IDMYSKCGSLKDARTLFEITRI--KNVASWNAMIGCYGKHGMVDSSIELFERML 377 (544)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 377 (544)
.++++..++. ++....+|..+ ...-.++.++..|.+++..... |...++...|..-.+.++++.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999884 34444555444 3444578899999999987774 677788889998899999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHH
Q 044352 378 EEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMA 456 (544)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 456 (544)
+-+ +.|..++......-...|+.+.|..+|.-+.+..........|.+.+..-...|.++.|..+|+++. ..+....|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 963 4577889998888889999999999999988742222334456666777778999999999999875 44555677
Q ss_pred HHHHHHHh-----hcC-----------ChHHHHHHHHHHHHc
Q 044352 457 GAFRNGCN-----IHG-----------RRDLAVTMGEEFFEM 482 (544)
Q Consensus 457 ~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 482 (544)
.+.+..-. +.+ +...|..+|+++...
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 66665333 334 677899999998763
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.2e-17 Score=146.08 Aligned_cols=491 Identities=9% Similarity=0.004 Sum_probs=330.9
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHH
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVM 86 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 86 (544)
+..+..-+..+++-+..+.++..|.-+.+++.....++. ....+++++.-.|+++.|..+...-. ..|..+......
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~-d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA-DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH-HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345667788888888899999999999999988844444 45678999999999999988877644 778888888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCS 166 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (544)
++.+..++++|..++..-. +..+...|-..-. ...-..+.+. +. .+......+.-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHH
Confidence 9999999999999887431 1111111110000 0000011111 00 0111122222233345666778888
Q ss_pred HHHHHhhccCCChhhHHHHHHHHhccC-ChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 167 ARRVFHGMFERDVVSWTSMISGYCNVS-KVDEAVVLFERMKLE-GLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 167 A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
|...|.+....|+..+..+...-...- -..+-..++..+.-. -...+......+.........-+.....-.+..-.+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 888888887777776665543322110 111222222221000 001112222222221110000001111111111123
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 245 FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSA 324 (544)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (544)
...++........-+...+++.+..++...+.+.. ++....+..-|.++...|+...-..+-..+.+.- |..+.+|..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 35566666666777888899999999999988764 5566666666778888888888887777777764 446778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIKN---VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLV 401 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (544)
+.-.|...|+..+|++.|.+...-| ...|-.+..+|.-.|..++|+..+..+-+. ++-....+..+..-|.+.+++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998777543 357999999999999999999999888774 333444455566678889999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCChhHHHHHHHHHhhcCChHHH
Q 044352 402 EKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+.|.++|.+... ..|.|+.+++.++-.....+.+.+|..+|+... .....++++.++.+|++.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998875 446667778888877888889999999887652 112456788999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+..+++++.+.|.++.++..+|.+|...|+++.|++.|.+.+-.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987743
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2e-14 Score=132.77 Aligned_cols=465 Identities=13% Similarity=0.050 Sum_probs=384.3
Q ss_pred HHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC--------CCCchhHHHHHHHH
Q 044352 18 CLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--------NPNVFMLNWMVMAS 88 (544)
Q Consensus 18 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~ 88 (544)
.+..++++..-++.|+.+++++.+. |.+.. +|..-...--.+|+.+....+.++-. .-|...|-.=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~-IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDRE-IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3555677888999999999999999 88888 99988888889999998888877654 35666788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcccccC--HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 044352 89 AFTGNFQEAIGYFSLMREFIYRCN--KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCS 166 (544)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (544)
-..|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...++. ++-+..+|......--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 888999888888888888776543 358888889999999999999999999987 46777888888887778899999
Q ss_pred HHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044352 167 ARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE 243 (544)
Q Consensus 167 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (544)
...+|++... .....|......+-..|+...|..++....+.. +.+...|-..+.......+++.|..+|.+....
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999855 456678888888888999999999999998775 446778888888999999999999999998765
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHH
Q 044352 244 GFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTG 322 (544)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (544)
.|+...|.--+...--.++.++|.+++++.++. .|+ ...|..+.+.+-+.++.+.|...|..-.+. ++..+..|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 788888887777777789999999999998865 455 446777788889999999999888765554 45567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGG 399 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (544)
..+...-.+.|.+-.|..++++..- .+...|...|+.-.+.|+.+.|..++.+.++. .+.+...|...+...-+.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 8888888899999999999998774 36679999999999999999999999999886 5666677777777766666
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHhhcCChHHHHHHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-M-YVTNSMAGAFRNGCNIHGRRDLAVTMGE 477 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (544)
+-......+++ ...|+.+...+...+....++++|.+.|.+.. . +....+|..+...+.++|.-+.-.+++.
T Consensus 802 rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 802 RKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 64444444332 35677888899999999999999999999875 3 3446788888889999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHH
Q 044352 478 EFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 478 ~~~~~~p~~~~~~~~l~~~~ 497 (544)
....-+|.+...|.....--
T Consensus 876 ~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred HHhccCCCCCcHHHHHhhhH
Confidence 99999999888887765543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=9.1e-16 Score=135.55 Aligned_cols=432 Identities=10% Similarity=0.067 Sum_probs=301.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHH-HHHHHhhCCCChHHHHHHHHHHHHcCCCCC----hhHHHHHH
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFS-IVLKACVGLLDIKKGKQVHAVATQMGFEND----VSVGNALI 155 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 155 (544)
...|.+-|..+..+.+|+..|+-+.+....|+...+. .+...+.+.+.+.+|++.+...+..-...+ ..+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3345566677778899999999998887778776543 244567788999999999998887632222 23445555
Q ss_pred HHHHhCCCHHHHHHHHhhccC--CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhH--------HHHHHHHH
Q 044352 156 DMYSKCGLLCSARRVFHGMFE--RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY--------NAIIASYA 225 (544)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~ 225 (544)
-.+.+.|+++.|+..|+.+.+ |+..+-..++-++...|+.++..+.|.+|...-..||..-| ..|+.-..
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 567889999999999999865 66655445555666789999999999999765434433322 12222111
Q ss_pred hc--------CChHHHHHHH---HHhhhCCCCCCHhH---H----------H--------HHHHHHHcCCCHHHHHHHHH
Q 044352 226 RR--------GDSNAAFAFF---SRMTAEGFVPDLVT---W----------N--------AMISGFAQSKRENEALKLFK 273 (544)
Q Consensus 226 ~~--------~~~~~a~~~~---~~~~~~~~~~~~~~---~----------~--------~l~~~~~~~~~~~~a~~~~~ 273 (544)
+. .+-..|.+.. -++..--+.|+... | . .-..-+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11 1111222222 22221122333110 1 0 01234678999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhh--ccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHH
Q 044352 274 GMLVSGIKPNNVTVTGVLQAGG--LTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVA 351 (544)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 351 (544)
-+.+..-+.-...-+.+...+. ...++..|.++-+...... ..++.....-.......|++++|.+.+++....|..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876543333333333333332 3456777777777665543 234444444444455689999999999999887665
Q ss_pred HHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 352 SWNA---MIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 352 ~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
.-.+ +...+-..|+.++|++.|-++..- +..+..++..+...|....+...|++++.+... -++.|+.++..|.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHH
Confidence 4333 334567789999999999988764 455778888999999999999999999988865 6788899999999
Q ss_pred HHHHhcCCHHHHHHHHHh-CC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH
Q 044352 429 DMLCRSGRMVEAYDLLRQ-VP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
..|-+.|+..+|.+.+-. .. .+.+..+...++.-|....-.++|+.+|+++.-+.|+.......++.++.+.|++.+|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999988644 33 4556777777777777777899999999999999997777777778888899999999
Q ss_pred HHHHHHHHhc
Q 044352 507 ENLRKIMKEK 516 (544)
Q Consensus 507 ~~~~~~~~~~ 516 (544)
.++|+....+
T Consensus 680 ~d~yk~~hrk 689 (840)
T KOG2003|consen 680 FDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.1e-14 Score=125.07 Aligned_cols=424 Identities=14% Similarity=0.140 Sum_probs=269.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhh--CCCChHHH-HHHHHHHHHcCCCCChhHHHHH
Q 044352 78 VFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACV--GLLDIKKG-KQVHAVATQMGFENDVSVGNAL 154 (544)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 154 (544)
+.+=|.++.. ..+|....+.-+|+.|.+.|++.+...-..+++..+ ...+..-+ .+.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455555553 457889999999999999988777766555554322 22222211 12222333333 2333333
Q ss_pred HHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAF 234 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 234 (544)
+.|...+ ++-+.......++..||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 2343333 455555566677888888888888888888888887777677888888887765443222 5
Q ss_pred HHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH-HHHHHHH
Q 044352 235 AFFSRMTAEGFVPDLVTWNAMISGFAQSKRENE----ALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQI-GREIHAL 309 (544)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~ 309 (544)
++..+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..++..+++.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 677778877778888888888888888887764 45667777788888888888888888777777643 3333333
Q ss_pred HHH----cCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------cc---HHHHHHHHHHHHhcCChHHHH
Q 044352 310 VCR----MGL----HIDVFTGSALIDMYSKCGSLKDARTLFEITRI--------KN---VASWNAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 310 ~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~A~ 370 (544)
+.. ..+ +.+...|...+..|....+.+.|.++-.-... ++ ..-|..+....++....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222 22344556667777777777777766554432 11 224556666777777778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CH--------HH--
Q 044352 371 ELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG-RM--------VE-- 439 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-- 439 (544)
..|+.|.-.-+-|+..+...++++....+.++-..++|..++.- |..........+...+++.. +. ..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 88888877767778888888888888888888888888777664 65555555555555555443 11 11
Q ss_pred ---HHHHHHh-------CC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC---CCCc--hhHHHHHHHHHhcCCh
Q 044352 440 ---AYDLLRQ-------VP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG---LRKP--DGFVMLSNICAADGEW 503 (544)
Q Consensus 440 ---A~~~~~~-------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~ 503 (544)
|..+++. +. ..-.....+.++..+.+.|.+++|-+++....+.. |..| .+..-+...-...+..
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 1111111 11 23344555666667778888888888888886543 3333 2344556666777888
Q ss_pred HHHHHHHHHHHhcCCC
Q 044352 504 HEAENLRKIMKEKNVQ 519 (544)
Q Consensus 504 ~~A~~~~~~~~~~~~~ 519 (544)
..|+.+++-+...+..
T Consensus 578 sqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHHcCch
Confidence 8888888888766553
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=6.9e-14 Score=122.93 Aligned_cols=423 Identities=14% Similarity=0.156 Sum_probs=223.7
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc--ccchhhHHHHHHHHhhc--CCChH---------------------
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN--DLNIFSLKSKLVGVYAG--CGDVN--------------------- 64 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~--------------------- 64 (544)
|.+..+=+.++. ...+|.+..+.-+|+.|... +-+.. +...+.+.-+- ..+.-
T Consensus 113 ~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 113 PLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred chhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 444455555555 44778999999999999888 54554 55555443221 11111
Q ss_pred ---HHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 044352 65 ---SARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQ 141 (544)
Q Consensus 65 ---~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 141 (544)
...+++-+..|.+..++..||.++++--..+.|.++|++......+.+..+|+.+|.+-. +....++..+|..
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHH
Confidence 111244444466777788888888887778888888888777767777778887776543 2223677777777
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044352 142 MGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAII 221 (544)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 221 (544)
..+.||..++|+++.+..+.|+++.|.. .|.+++.+|++.|+.|...+|..++
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHH
Confidence 7777888888888887777777766654 3445566666666666666666666
Q ss_pred HHHHhcCChHH-HHHHHHHhhh----CCCC----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCC---H
Q 044352 222 ASYARRGDSNA-AFAFFSRMTA----EGFV----PDLVTWNAMISGFAQSKRENEALKLFKGMLVSG-----IKPN---N 284 (544)
Q Consensus 222 ~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~ 284 (544)
..+.+.++..+ +..++.++.. ..+. .|...|...+..|.+..+.+-|.++-.-+. .| +.|+ .
T Consensus 320 k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~-tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 320 KNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK-TGDNWKFIGPDQHRN 398 (625)
T ss_pred HHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhhcChHHHHH
Confidence 66666555533 2223322221 1111 123334444555555555555555443332 11 1222 1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcC
Q 044352 285 VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHG 364 (544)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 364 (544)
.-|..+..+.+.....+.....|..+.-.-.-|+..+...++++..-.+.++-..+++..+..-+ +.-
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~ 466 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------------HTF 466 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------------hhh
Confidence 22344444455555555555555555555445555555555555555555555555554433211 111
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCchHHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044352 365 MVDSSIELFERMLEEGMRANEV---TLISVLSACSHGGLVEKGL-EIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEA 440 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 440 (544)
+-+--++++..|......|+.. -+.....-|. . ++.++. ..-.++.+ ........+.++-.+.+.|..++|
T Consensus 467 r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA 541 (625)
T KOG4422|consen 467 RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-A-DIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKA 541 (625)
T ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHH
Confidence 1112223333333322223211 1111111111 0 111111 11122222 123334555666666677777777
Q ss_pred HHHHHhC-------CCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 441 YDLLRQV-------PMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 441 ~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
.+++.-. +..|...+..-++......++...|...++-+...+
T Consensus 542 ~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 542 WEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 7666543 233333344455555566677777777777776555
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.1e-16 Score=137.10 Aligned_cols=405 Identities=12% Similarity=0.018 Sum_probs=269.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYS 159 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 159 (544)
+.....-|.++|++++|++.|.+.++ ..|+ +..|.....+|...|+|+++.+-....++.+ |.-...+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 44456678889999999999999998 5677 7788888889999999999999988888764 334556777778888
Q ss_pred hCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHH--------H-HHHcC--CCCCHhhHHHHHHHHHhcC
Q 044352 160 KCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFE--------R-MKLEG--LEPNQFTYNAIIASYARRG 228 (544)
Q Consensus 160 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~-~~~~~--~~~~~~~~~~l~~~~~~~~ 228 (544)
..|++++|+.-.. ..++...+....-.--+.++++ + +.+.+ +-|+.....+....+...
T Consensus 195 ~lg~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~- 264 (606)
T KOG0547|consen 195 QLGKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD- 264 (606)
T ss_pred hhccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-
Confidence 8899888865221 1122222221111111222222 1 11111 223333333332222110
Q ss_pred ChHHHHHHHHHhhhCCCCCCHhHHHHHHHHH----Hc-CCCHHHHHHHHHHHHHcC-CCC--C---------HHHHHHHH
Q 044352 229 DSNAAFAFFSRMTAEGFVPDLVTWNAMISGF----AQ-SKRENEALKLFKGMLVSG-IKP--N---------NVTVTGVL 291 (544)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~-~~~--~---------~~~~~~l~ 291 (544)
+. ..+. .+.......+..++ .. ...+..|.+.+.+-.... ..+ + ..++....
T Consensus 265 -~~------~~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 265 -PK------PLFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred -cc------cccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 00 0000 00001111111111 11 112333333333221100 011 1 11122222
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHH
Q 044352 292 QAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDS 368 (544)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 368 (544)
.-+.-.|+.-.+..-|+..+.....+ ...|..+..+|....+.++....|..... .|+.+|..-.+.+.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 22445678888888899888876443 33477777889999999999999987664 567789888888899999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 369 SIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
|..-|++.+.. .| +...|..+..+..+.+.++++...|++.++ .+|..+++|+-....+..++++++|.+.|+.+
T Consensus 413 A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999985 44 566788888888899999999999999988 57777889999999999999999999999986
Q ss_pred C-CCCC---------hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 448 P-MYVT---------NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 448 ~-~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
. ..|. +....+++..- -.+++..|+.+++++++++|....++..|+......|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2222 33333333333 348999999999999999999999999999999999999999999998653
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.3e-13 Score=121.25 Aligned_cols=468 Identities=10% Similarity=0.006 Sum_probs=350.3
Q ss_pred hHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 044352 36 HALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRC 111 (544)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 111 (544)
|+.-++. ..+.. .|...++.-...+++..|+.+|++.. ..+...|...+..-.++.....|..++++.+. +-|
T Consensus 62 fEd~irrnR~~~~-~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lP 138 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQ-VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILP 138 (677)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcc
Confidence 4444444 55666 77777777778899999999999987 56777888899999999999999999999987 445
Q ss_pred CHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc--cCCChhhHHHHHHH
Q 044352 112 NKF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM--FERDVVSWTSMISG 188 (544)
Q Consensus 112 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~ 188 (544)
.+. .|-..+..--..|+...|.++|+.-.+- .|+...|.+.+..-.+.+.++.|..++++. ..|++.+|--....
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarF 216 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARF 216 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHH
Confidence 443 3444444445679999999999988765 799999999999999999999999999987 45999999999998
Q ss_pred HhccCChhHHHHHHHHHHHc-CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HhHHHHHHHHHHcCC
Q 044352 189 YCNVSKVDEAVVLFERMKLE-GL-EPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD---LVTWNAMISGFAQSK 263 (544)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 263 (544)
-.++|+...+..+|+...+. |- ..+...+.+....-.++..++.|.-+|+-..+. -|. ...|..+...--+-|
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhc
Confidence 89999999999999887654 11 122334555555555678899999999888766 443 344544444444455
Q ss_pred CHHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCH-HHHHHHH-----HHH
Q 044352 264 RENEALKL--------FKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDV-FTGSALI-----DMY 329 (544)
Q Consensus 264 ~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~-----~~~ 329 (544)
+.....+. |++++..+ +.|-.++...+......|+.+...++++..+..-++.+. ..|...| -++
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 54443332 34444443 667788888888888899999999999998876433221 1121111 111
Q ss_pred ---HhcCCHHHHHHHHHhcCC---ccHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044352 330 ---SKCGSLKDARTLFEITRI---KNVA----SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGG 399 (544)
Q Consensus 330 ---~~~~~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (544)
....+.+.+.++++.... .... .|........++.+...|.+++...+. ..|-..+|...+..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 346788888888876553 2222 455555566678899999999998775 5899999999999999999
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCh----hHHHHHHHHHhhcCChHHHHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTN----SMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
+++.+..++++..+ -.|-+..+|...+..-...|+.+.|..+|+-+...|.. ..|.+++..-...|.++.|..+
T Consensus 452 efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999987 34556778888888888999999999999988756643 3567777777789999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhc
Q 044352 476 GEEFFEMGLRKPDGFVMLSNICA-----ADG-----------EWHEAENLRKIMKEK 516 (544)
Q Consensus 476 ~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 516 (544)
|+++++..+. ..+|...+..-. ..| ....|..+|+++...
T Consensus 530 YerlL~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 530 YERLLDRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 9999998874 447776665444 344 667888888888654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=3e-18 Score=155.12 Aligned_cols=257 Identities=16% Similarity=0.083 Sum_probs=110.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCG 333 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 333 (544)
+...+.+.|++++|++++++......+|+ ...+..+.......++++.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35555566666666666644333221222 223333344445556666666666666555422 44555556655 5778
Q ss_pred CHHHHHHHHHhcCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 044352 334 SLKDARTLFEITRI--KNVASWNAMIGCYGKHGMVDSSIELFERMLEEG-MRANEVTLISVLSACSHGGLVEKGLEIFRS 410 (544)
Q Consensus 334 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 410 (544)
++++|.++++..-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766543 455667777788888899999999988877542 345677788888888899999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 411 MKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
..+. .|.+......++..+...|+.+++.++++... .+.++..+..++.++...|++++|..+++++.+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 8874 34457788888889999999998877776653 2456677888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+...++.++...|+.++|.++++++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.4e-13 Score=120.84 Aligned_cols=361 Identities=13% Similarity=0.084 Sum_probs=258.5
Q ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhH--HHHH
Q 044352 144 FENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY--NAII 221 (544)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~ 221 (544)
...|...+-...-.+.+.|....|+..|......-+..|.+.+....-..+.+.+.. +. .|.+.+.... -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHH
Confidence 355555555556667778889999998888876555555555443322233322222 21 1222222221 1234
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCc
Q 044352 222 ASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGI--KPNNVTVTGVLQAGGLTGS 299 (544)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 299 (544)
.++-...+.+++..-.+.....|++.+...-+....+.....++|+|+.+|+++.++.. -.|..+|..++-+-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 55566668888888888888888777777667677778888999999999999997631 1145666666644322111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 300 IQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN---VASWNAMIGCYGKHGMVDSSIELFERM 376 (544)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 376 (544)
.. .+-......+ +--+.+...+.+-|.-.++.++|...|++..+-| ...|+.+..-|...++...|++-++++
T Consensus 315 Ls---~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LS---YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH---HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11 1111111111 2345677778888888999999999999888644 357899999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChh
Q 044352 377 LEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNS 454 (544)
Q Consensus 377 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 454 (544)
++- .+-|...|-.+.++|.-.+...=|+-+|++..+ --|.|+..|.+++.+|.+.++.++|+..|.++. ...+..
T Consensus 391 vdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred Hhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 985 244888999999999999999999999999876 456788999999999999999999999999875 334557
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFE-------MGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.+..++..|-+.++..+|...|++-++ .+|.-..+..-|+.-+.+.+++++|-.+..+....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 888999999999999999999999887 33444455666788888999999998877666554
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=5.2e-14 Score=133.30 Aligned_cols=288 Identities=10% Similarity=-0.019 Sum_probs=151.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHH--HHHHHHHcCCCHHHH
Q 044352 192 VSKVDEAVVLFERMKLEGLEPNQFT-YNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWN--AMISGFAQSKRENEA 268 (544)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 268 (544)
.|+++.|.+.+....+.. +++.. |..........|+++.|...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666655544331 11222 222233335666666666666666554 44433222 224556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc
Q 044352 269 LKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK 348 (544)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 348 (544)
...++++.+.. +-+......+...+...|+++.+..++..+.+.+..++...-....
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~---------------------- 229 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH----------------------
Confidence 66666666543 3334455555555556666666666666555554332111000000
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 349 NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
..|..++.......+.+...++++.+... .+.++.....+...+...|+.++|...+++..+. +++.... ++
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l 301 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LL 301 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HH
Confidence 01122222222223334444444444322 2335555556666666666666666666555542 3333222 12
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH
Q 044352 429 DMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
......++.+++.+..++.. .+.++.....++..+...|++++|.+.|+++++.+|+ ...+..++.++.+.|+.++|
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 22233466666666665542 2334455667777777777777777777777777774 44456777777777777777
Q ss_pred HHHHHHHHh
Q 044352 507 ENLRKIMKE 515 (544)
Q Consensus 507 ~~~~~~~~~ 515 (544)
.++|++.+.
T Consensus 381 ~~~~~~~l~ 389 (398)
T PRK10747 381 AAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh
Confidence 777776654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.5e-13 Score=128.71 Aligned_cols=287 Identities=10% Similarity=-0.003 Sum_probs=212.3
Q ss_pred hCCCHHHHHHHHhhccCC--Chh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHHhcCChHHHH
Q 044352 160 KCGLLCSARRVFHGMFER--DVV-SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYN--AIIASYARRGDSNAAF 234 (544)
Q Consensus 160 ~~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 234 (544)
..|+++.|++.+....+. ++. .+.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 379999999999887553 233 3333345558899999999999999865 56654333 3467888999999999
Q ss_pred HHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC
Q 044352 235 AFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG 314 (544)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (544)
..++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH-----------------------
Confidence 9999998885 55778889999999999999999999999998764432 2111110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 315 LHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISV 391 (544)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 391 (544)
..+|..++.......+.+...++++.+.. .++.....+...+...|+.++|..++++..+. +|++... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 01222222222233445555666665543 46677788888889999999999999888873 5555322 2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcCChH
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 470 (544)
+.+....++.+++.+..+...+ ..+.|+..+..++..+.+.|++++|.+.|+.+. ..|+...+..+..++.+.|+.+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3344456888999999988877 456667778888999999999999999998874 6688888888888999999999
Q ss_pred HHHHHHHHHHHcC
Q 044352 471 LAVTMGEEFFEMG 483 (544)
Q Consensus 471 ~A~~~~~~~~~~~ 483 (544)
+|..+|++.+.+-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.3e-13 Score=119.98 Aligned_cols=327 Identities=9% Similarity=-0.032 Sum_probs=244.9
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHH--HH
Q 044352 177 RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTW--NA 254 (544)
Q Consensus 177 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 254 (544)
.|...+......+-+.|..+.|.+.|......- +-.-..|..|.... .+.+.+.. +... .+.|...+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~----l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSI----LVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHH----HHhc-CcccchHHHHHH
Confidence 455555555566777899999999988876431 33334444443333 23322222 2211 12221111 12
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhc
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH--IDVFTGSALIDMYSKC 332 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 332 (544)
+..++....+.+++..-.......|.+.+...-+....+.....|++.|+.+|+.+.+..+- .|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34566666688888888888888887777777777777788899999999999999988421 2667777776433332
Q ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044352 333 GSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMK 412 (544)
Q Consensus 333 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (544)
.++.---...-.+.+-.+.+...+..-|.-.++.++|...|++.++.+ +.....|+.+.+-|...++...|++-++.+.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222221222223444456677778888888999999999999999963 3355678888889999999999999999998
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 413 ERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
+ -.|.|-..|..++.+|.-.+...=|+-+|+++. .+.|+..|.+++.+|.+.++.++|++.|.+++..+..+..++
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 7 457788999999999999999999999999984 566889999999999999999999999999999998889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 491 VMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..|+.+|.+.++.++|..+|++.++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999886
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.4e-13 Score=122.23 Aligned_cols=471 Identities=10% Similarity=-0.034 Sum_probs=306.5
Q ss_pred CcchHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC-CCCchhHHHHHHHHHh
Q 044352 12 SVNYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP-NPNVFMLNWMVMASAF 90 (544)
Q Consensus 12 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~ 90 (544)
+|..-+-+++++.-.|+++.|..+...-.-...+.. .....+.++.+..++++|..++.... ..++..|..-=. ..
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~-cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~ 124 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIA-CRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--AN 124 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hc
Confidence 455677889999999999998877766533366777 78888889999999999999999543 111111111000 00
Q ss_pred cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRV 170 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 170 (544)
.-..+.+. ++.. +......+-.-.+.|....+.++|...+.+..... ......+..++....- ...+-..+
T Consensus 125 ~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D-~~c~Ea~~~lvs~~ml--t~~Ee~~l 195 (611)
T KOG1173|consen 125 TLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYKEALLAD-AKCFEAFEKLVSAHML--TAQEEFEL 195 (611)
T ss_pred eeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhc--chhHHHHH
Confidence 00000010 0100 11111111122233445556666666666655432 1112222222222211 11122233
Q ss_pred Hhhc-----cCCChhhHHHHHHHH-hccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 171 FHGM-----FERDVVSWTSMISGY-CNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 171 ~~~~-----~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
|+.+ ...+......+.... ++..+ +.....-.+..-.+..-+.........-+...+++.+..++++.+.+..
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d 274 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD 274 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC
Confidence 3321 111222111111111 01000 0000000001111234455555666677778899999999999988765
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 245 FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSA 324 (544)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (544)
++....+..-|.++...|+..+-..+=.++.+.- +....+|..+.--|...|..++|++.|.+....+.. -...|..
T Consensus 275 -pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~ 351 (611)
T KOG1173|consen 275 -PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLA 351 (611)
T ss_pred -CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHH
Confidence 6677777777789999999988888888888653 556778888888888899999999999998876533 3557888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 044352 325 LIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLV 401 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (544)
....|.-.|..++|...+....+ .....+--+..-|.+.++.+.|.++|.+...- .+.|+..++-+.-.....+.+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhh
Confidence 99999999999999988865543 22222333444678889999999999998884 344777888887777788999
Q ss_pred HHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHH
Q 044352 402 EKGLEIFRSMKERYG-----VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVT 474 (544)
Q Consensus 402 ~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (544)
.+|..+|+.....-. .+....+++.|+.+|.+.+++++|+..+++.. .+.+..++.+++-.|...|+++.|+.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 999999998873210 11234578899999999999999999999874 67788999999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
.|.+++.+.|+|..+-..|..+...
T Consensus 511 ~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 511 HFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999998877777766554
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=5.6e-13 Score=127.04 Aligned_cols=284 Identities=13% Similarity=-0.000 Sum_probs=136.0
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHh--HHHHHHHHHHcCCCHHH
Q 044352 191 NVSKVDEAVVLFERMKLEGLEPNQ-FTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLV--TWNAMISGFAQSKRENE 267 (544)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 267 (544)
..|+++.|.+.+.+..+. .|+. ..+-.....+...|+++.|.+++.+..+. .|+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 356666666666555443 2332 22233345555566666666666665543 23322 22223555566666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---H----hcCCHHHHHH
Q 044352 268 ALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMY---S----KCGSLKDART 340 (544)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~ 340 (544)
|...++.+.+.. +-+..+...+...+...|+++.+.+.+..+.+.+..++......-..++ . .....+....
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666666543 2244455555566666666666666666666554332221111111111 1 1112233333
Q ss_pred HHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhcCCchHHHHHHHHHHHHH
Q 044352 341 LFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTL---ISVLSACSHGGLVEKGLEIFRSMKER 414 (544)
Q Consensus 341 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 414 (544)
.++.... .++..+..++..+...|++++|.+++++..+. .|+.... ..........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4444432 25555666666666666666666666666664 2322210 11111112234444444444444432
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHH--HHHHcCCCCchhHHH
Q 044352 415 YGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGE--EFFEMGLRKPDGFVM 492 (544)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~ 492 (544)
.+.++ +.....+++..+.+.|++++|.+.|+ .+.+..|+ +..+..
T Consensus 329 --~p~~~------------------------------~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~ 375 (409)
T TIGR00540 329 --VDDKP------------------------------KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAM 375 (409)
T ss_pred --CCCCh------------------------------hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHH
Confidence 11122 11334455555555666666666666 34444453 333445
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 044352 493 LSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
++.++.+.|+.++|.++|++.+
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666665543
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.1e-16 Score=140.08 Aligned_cols=256 Identities=15% Similarity=0.164 Sum_probs=109.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 044352 219 AIIASYARRGDSNAAFAFFSRMTAEG-FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLT 297 (544)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (544)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|...|+++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667777888888888885544332 13345556666667777888888888888887654 2244555566665 677
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CccHHHHHHHHHHHHhcCChHHHHHH
Q 044352 298 GSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR-----IKNVASWNAMIGCYGKHGMVDSSIEL 372 (544)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 372 (544)
+++++|..++....+.. +++..+..++..+...++++++..+++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887777665543 455666777888888899999888887744 24667888889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CC
Q 044352 373 FERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MY 450 (544)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 450 (544)
+++.++.. +.|......++..+...|+.+++.+++....+. .+.++..+..++.+|...|++++|..+|++.. .+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999962 346778888999999999999999999998775 36677788899999999999999999999874 45
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
.|+.....++.++...|+.++|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6788889999999999999999999998875
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=9.9e-13 Score=117.77 Aligned_cols=218 Identities=10% Similarity=-0.059 Sum_probs=166.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 260 AQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
.-.|+.-.|..-|+..+.....++ ..|..+...|....+.++....|....+.+ +.++.+|..-.+++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 346777888888888886543332 226667777888888888888888888876 346777888888888889999999
Q ss_pred HHHHhcCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC
Q 044352 340 TLFEITRIK---NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 340 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 416 (544)
.=|++...- +...|-.+..+..+.+++++++..|++.+.. ++..+..|+.....+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 999887764 3445666666667788999999999999887 6777889999999999999999999999998763
Q ss_pred CCCc---------hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 417 VKIS---------KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 417 ~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
.|+ +.+...++..- -.+++..|.++++++. .+....++..++..-.+.|+.++|+++|++...+-.
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 332 12222222222 2388999999999875 344556788888899999999999999999887653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=6.6e-13 Score=126.55 Aligned_cols=213 Identities=10% Similarity=-0.028 Sum_probs=134.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhcC
Q 044352 325 LIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA---CSHG 398 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 398 (544)
....+...|+++.|...++.+.+ .++..+..+...+...|++++|.+.+..+.+.+..+.......-..+ ....
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666665553 24455666666777777777777777777776533222211111111 1222
Q ss_pred CchHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhH---HHHHHHHHhhcCChHHH
Q 044352 399 GLVEKGLEIFRSMKERY--GVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSM---AGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A 472 (544)
+..+.+.+.+..+.+.. ..+.+...+..++..+...|+.++|.+++++.. ..|+... ...........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 33333334444444420 112367788888888888899999888888764 3444432 11122233456888999
Q ss_pred HHHHHHHHHcCCCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEecC-eeecccc
Q 044352 473 VTMGEEFFEMGLRKP--DGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKRN-EFVEKEV 538 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 538 (544)
.+.+++.++..|+|+ .....+|+++.+.|+|++|.++|++.......|++.... .++. +...|+.
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~ 386 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence 999999999999999 899999999999999999999999644444455665533 4444 6666664
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=2e-11 Score=115.75 Aligned_cols=382 Identities=10% Similarity=0.049 Sum_probs=258.6
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHh-hHH
Q 044352 143 GFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQF-TYN 218 (544)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 218 (544)
.+..+..+|..+.-+....|+++.+-+.|++... .....|+.+...+...|.-..|..+++.-......|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3456788888888888899999999999988765 455678888888888888888888887765442224333 333
Q ss_pred HHHHHHH-hcCChHHHHHHHHHhhhC--CC--CCCHhHHHHHHHHHHc----CC-------CHHHHHHHHHHHHHcCCCC
Q 044352 219 AIIASYA-RRGDSNAAFAFFSRMTAE--GF--VPDLVTWNAMISGFAQ----SK-------RENEALKLFKGMLVSGIKP 282 (544)
Q Consensus 219 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~----~~-------~~~~a~~~~~~~~~~~~~~ 282 (544)
..-..|. +.+.+++++++-.++.+. +. ...+..|..+.-+|.. .. ...++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333333 456777777776666552 10 1223444444444432 11 2346777777777654 33
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--------------
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK-------------- 348 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------- 348 (544)
|+.....+.--++-.++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+.....
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 444444455556777888889888888888866778888888888888888888888887644321
Q ss_pred -----c----HHHHHHHHHHHH-----------------------hcCChHHHHHHHHHHHH--------cC--------
Q 044352 349 -----N----VASWNAMIGCYG-----------------------KHGMVDSSIELFERMLE--------EG-------- 380 (544)
Q Consensus 349 -----~----~~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~~~~--------~~-------- 380 (544)
+ ..+...++..+- ..++..++.+....+.. .|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0 112222221111 01122222222222110 11
Q ss_pred -CCCCH--------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 044352 381 -MRANE--------VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--M 449 (544)
Q Consensus 381 -~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 449 (544)
+.|.+ ..+......+.+.+..++|...+.+... ..+.....|...+..+...|+..+|.+.|.... .
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 11111 2344555667788888999988888876 556677888888899999999999999998764 4
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHH--HHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVT--MGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRV 527 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 527 (544)
+.++.+..+++..+.+.|+..-|.. ++..+++++|.|+.+|..+|.++.+.|+.+.|.+.|.-+.+... ..|..+|.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs 793 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFS 793 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccccc
Confidence 5567889999999999998888887 99999999999999999999999999999999999999987542 34444444
Q ss_pred E
Q 044352 528 E 528 (544)
Q Consensus 528 ~ 528 (544)
.
T Consensus 794 ~ 794 (799)
T KOG4162|consen 794 N 794 (799)
T ss_pred c
Confidence 3
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.4e-14 Score=131.41 Aligned_cols=281 Identities=11% Similarity=-0.056 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCchHHHHH
Q 044352 228 GDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSG--IKPNNVTVTGVLQAGGLTGSIQIGRE 305 (544)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (544)
-+..+|...|..+..+- .-+......+..+|...+++++|.++|+.+.+.. ..-+..+|...+..+.. +-+..
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35678899998866552 2233555667889999999999999999998642 11245566666654322 12222
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044352 306 IH-ALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNV---ASWNAMIGCYGKHGMVDSSIELFERMLEEGM 381 (544)
Q Consensus 306 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 381 (544)
.+ +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-|+ .+|+.+..-+.....++.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 22 2333333 55789999999999999999999999999887544 57788888888899999999999998763
Q ss_pred CC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHH
Q 044352 382 RA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGA 458 (544)
Q Consensus 382 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 458 (544)
.| +...|--+...|.+.++++.|+-.|+++.+ --|.+......++..+.+.|+.++|+++++++. .+.++.....
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 33 445677788889999999999999999986 234456667778888999999999999999974 5667777777
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
.+..+...+++++|...+|++.++-|++..++..++.+|.+.|+.+.|+.-|--+.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 888899999999999999999999999999999999999999999999999888776543
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8e-14 Score=129.69 Aligned_cols=286 Identities=13% Similarity=0.090 Sum_probs=226.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHhHHHHHHHHHHcCCCHHHHHH
Q 044352 193 SKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG--FVPDLVTWNAMISGFAQSKRENEALK 270 (544)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 270 (544)
-+..+|...|.++... +.-+......+..+|...+++++|.++|+.+.+.. ...+...|.+.+..+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888886554 23334556778899999999999999999998762 12356778777765422 22333
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc
Q 044352 271 LF-KGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN 349 (544)
Q Consensus 271 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 349 (544)
.+ +.+++.. +..+.+|..+..+|..+++.+.|++.|++..+.+ +....+|..+..-+....++|.|...|+.....+
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 3333332 5567899999999999999999999999999875 2367889999999999999999999999998876
Q ss_pred HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHH
Q 044352 350 VA---SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYAC 426 (544)
Q Consensus 350 ~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (544)
+. +|..+...|.+.++++.|+-.|+++.+-+ +-+......+...+.+.|+.++|+++++++... -+.|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHH
Confidence 65 56667888999999999999999999842 336667777888889999999999999999763 3445556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
-+..+...+++++|+..++++. .+.+...+..++..|.+.|+.+.|+..|-=|..++|+-..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 7788889999999999999985 4555667888889999999999999999999999996443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=2.2e-10 Score=106.46 Aligned_cols=484 Identities=13% Similarity=0.092 Sum_probs=275.7
Q ss_pred cchHHHHHHHhhccchhhhhhHHhHHHhhc---ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHH
Q 044352 13 VNYLDCLLGKCMKSKALRQGKQVHALLCTN---DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASA 89 (544)
Q Consensus 13 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 89 (544)
|..+...++.+.++|++..-...|+.++.. ..... +|...+......|-++.++.++.+..+.++..-+-.|..++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r-IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR-IWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc-chHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345666667777888888888888888887 33345 77777777777888888888888888777777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcc------cccCHHHHHHHHHHhhCCCChH---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 90 FTGNFQEAIGYFSLMREFI------YRCNKFTFSIVLKACVGLLDIK---KGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
..+++++|.+.+...+... .+.+...|..+-...++..+.- ....++..+...-...-...|.+|...|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 8888888888887765431 1223334444444444333222 223333333332111113567888888888
Q ss_pred CCCHHHHHHHHhhccCC--ChhhHHHHHHHH-------------------------------------------------
Q 044352 161 CGLLCSARRVFHGMFER--DVVSWTSMISGY------------------------------------------------- 189 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~------------------------------------------------- 189 (544)
.|.+++|..++++.... .+.-|..+.++|
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 88888888888776331 111111111111
Q ss_pred -----------------hccCChhHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 044352 190 -----------------CNVSKVDEAVVLFERMKLEGLEPN------QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFV 246 (544)
Q Consensus 190 -----------------~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (544)
+..|+..+....|.+.... +.|. ...|..+...|-..|+++.|..+|++..+...+
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 0112233333333333221 1111 123466677777888888888888887755422
Q ss_pred CC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHhhccCchHHHHHH
Q 044352 247 PD---LVTWNAMISGFAQSKRENEALKLFKGMLVSGIK----------P-------NNVTVTGVLQAGGLTGSIQIGREI 306 (544)
Q Consensus 247 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~ 306 (544)
.- ..+|..-...-.+..+++.|++++++.....-. | +...|...+...-..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 21 234555555556677888888887776532111 1 122234444444556677777888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----ccHH-HHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 044352 307 HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI----KNVA-SWNAMIGCYGK---HGMVDSSIELFERMLE 378 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 378 (544)
++.+.+..+. ++.+.......+..+.-++++.+++++... |++. .|+..+.-+.+ .-..+.|..+|++.++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888877643 444444444455666778888888887664 4443 67777766654 2367889999999888
Q ss_pred cCCCCCHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh
Q 044352 379 EGMRANEVTLISVL--SACSHGGLVEKGLEIFRSMKERYGVKIS--KEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTN 453 (544)
Q Consensus 379 ~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 453 (544)
|.+|...-+..++ ..-.+.|....|+.+++++.. ++++. ...|+..+.--...=-...-..+|+++. .-|+.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS 655 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH
Confidence 5666543222222 223346777888888888755 33332 2344444432222111222223333321 11222
Q ss_pred h---HHHHHHHHHhhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCC
Q 044352 454 S---MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR--KPDGFVMLSNICAADGE 502 (544)
Q Consensus 454 ~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 502 (544)
. .....+..-.+.|..+.|+.+|...-++-++ ++..|...=..-.+-|+
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 2 2222333445667777777777766665432 33445555555555565
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=9.6e-12 Score=107.02 Aligned_cols=443 Identities=11% Similarity=0.072 Sum_probs=272.1
Q ss_pred HHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHH
Q 044352 20 LGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQ 95 (544)
Q Consensus 20 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 95 (544)
+.-+...+|++.|+.+++..... ......+-.-++.++.+.|++++|...+..+. .++...+..+.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 34445678999999999888766 22222144556667778899999999988776 455666777777777788888
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhcc
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMF 175 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 175 (544)
+|..+-.+..+ ++..-..++....+.++-++-....+.+... ..-..+|....-..-.+.+|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766643 3444455566667788877777776665432 2333345555445567889999999887
Q ss_pred CCCh--hhHHHHH-HHHhccCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhH
Q 044352 176 ERDV--VSWTSMI-SGYCNVSKVDEAVVLFERMKLEGLEPN-QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVT 251 (544)
Q Consensus 176 ~~~~--~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (544)
..+. ...|..+ -+|.+..-++-+.+++.-..+. .|| +...|.......+.-+-..|.+-.+.+...+-..
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 6443 3445433 4566777777777777776654 444 3444544444444333333333344443332111
Q ss_pred HHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 252 WNAMISGFAQ-----SKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALI 326 (544)
Q Consensus 252 ~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 326 (544)
|. .+.-+++ -.+-+.|++++-.+.+. -| ..-..++--|.+.+++.+|..+.+.+. +.++.-|..-.
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 11 1222222 23345677776665532 23 233345556778888888887766543 22333333222
Q ss_pred HHHHhcCC-------HHHHHHHHHhcCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 327 DMYSKCGS-------LKDARTLFEITRIK-----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 327 ~~~~~~~~-------~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
-.+...|+ ..-|.+.|+-.-.. ...--.++...+.-..++++++..+...... +..|......+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 23333332 34455666543321 1122344555566667788888888887775 34444445557888
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChh-HHHHHHHHHhhcCChHHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNS-MAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 473 (544)
.+..|++.+|.++|-.+... .+..+..-...+.++|.+.++++-|++++-++..+.+.. ....+++.|.+.+.+--|-
T Consensus 403 k~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999887542 333333334567788999999999999988876444443 3445556788899998899
Q ss_pred HHHHHHHHcCCCCchhH
Q 044352 474 TMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 474 ~~~~~~~~~~p~~~~~~ 490 (544)
+.|+.+-.++| +|..|
T Consensus 482 KAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEILDP-TPENW 497 (557)
T ss_pred HhhhHHHccCC-Ccccc
Confidence 99998888887 34443
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.5e-11 Score=108.00 Aligned_cols=282 Identities=13% Similarity=0.039 Sum_probs=154.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 044352 192 VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKL 271 (544)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (544)
.|++.+|+++..+-.+.+ +.....|..-.++.-..|+.+.+-.++.+..+.--.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555544443 2222333334444445555555555555555441133334444444555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 272 FKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDV-------FTGSALIDMYSKCGSLKDARTLFEI 344 (544)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 344 (544)
+.++.+.+ +-+........++|.+.|++.....++..+.+.+.-.+. .++..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 223444455555555555555555555555555443332 2344444444444455555556665
Q ss_pred cCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch
Q 044352 345 TRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK 421 (544)
Q Consensus 345 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 421 (544)
.+. .++..-.+++.-+.+.|+.++|.++.++..+++..|+ ....-.+.+.++...-++..++..+. .+.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCCCh
Confidence 553 3566666667777777777777777777777655555 22222455666666666666666553 33334
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQV-PMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
..+..++..|.+.+.+.+|.+.|+.. ...|+...+..++.++.+.|+.++|....++++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55666666666666666666666654 2555666666666666666666666666666554
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.4e-12 Score=108.47 Aligned_cols=275 Identities=12% Similarity=0.033 Sum_probs=188.2
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC-CCCch------hHHHHHH
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP-NPNVF------MLNWMVM 86 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~------~~~~l~~ 86 (544)
.|..=++.+ -+++.+.|...|-++++. +.+.. ++..|+..|.+.|..|.|+++-+.+. .||.. +...|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e-~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFE-AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCchhhH-HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344444433 456788888888888888 44455 88888888888899999998888876 44432 3445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhCC
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV----SVGNALIDMYSKCG 162 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 162 (544)
-|...|-++.|.++|..+.+.+. --......++..|-...+|++|+.+-+++.+.+-.+.. ..|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 77888888888888888877432 24456777888888888888888888888877633332 34556666666677
Q ss_pred CHHHHHHHHhhccCCChh---hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 163 LLCSARRVFHGMFERDVV---SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
+.+.|...+.+..+.|.. .--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|...|+.++....+..
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 788888888777654433 33445567777888888888888877765444455667777788888888888888777
Q ss_pred hhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 044352 240 MTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL 296 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (544)
+.+. .+....-..+...-....-.+.|...+.+-+.. +|+...+..++.....
T Consensus 275 ~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 275 AMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 7766 334444444444444445556666665555544 6777777777766443
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.3e-12 Score=107.31 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=171.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH------hHHHHHHHHHHcCCCH
Q 044352 192 VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDL------VTWNAMISGFAQSKRE 265 (544)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 265 (544)
+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++.+.+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456677777777776532 223334455667777777777777777776643 322 1233455556667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044352 266 NEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEIT 345 (544)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 345 (544)
|.|..+|..+.+.+ ..-......++..|....++++|+.+-.++.+.+..+.. ..+..
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~---~eIAq------------------ 181 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR---VEIAQ------------------ 181 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch---hHHHH------------------
Confidence 77777776666533 222333444444444445555554444444443322110 00111
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHH
Q 044352 346 RIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYA 425 (544)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (544)
.|..+...+....+.+.|..++.+..+.+ +.+...-..+.......|+++.|.+.++.+.+. +...-+.+..
T Consensus 182 ------fyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~ 253 (389)
T COG2956 182 ------FYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 23445555556667777777777777652 334444555666677777777777777777765 4444456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-h--cC
Q 044352 426 CVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA-A--DG 501 (544)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~--~g 501 (544)
.|..+|...|+.++...++.++. ..+....-..+........-.+.|...+-+-+...|. ...+..++.... . .|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhcccccc
Confidence 77777777888877777776653 4444555555555545555567777777777777774 444444444433 2 24
Q ss_pred ChHHHHHHHHHHHhcCCCCCC
Q 044352 502 EWHEAENLRKIMKEKNVQKQP 522 (544)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~~~~ 522 (544)
...+-+..++.|+...++..|
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcC
Confidence 577777788888776665554
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-10 Score=102.27 Aligned_cols=294 Identities=10% Similarity=-0.015 Sum_probs=213.6
Q ss_pred cCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HhHHHHHHHHHHcCCCHHHHH
Q 044352 192 VSKVDEAVVLFERMKLE-GLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD-LVTWNAMISGFAQSKRENEAL 269 (544)
Q Consensus 192 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 269 (544)
.++-..+...+-.+... -++-+......+...+...|+.++|+..|++.... .|+ ..........+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444443333222 23556677788888888888888888888887744 232 222333334456778888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 044352 270 KLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-- 347 (544)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 347 (544)
.+...+.... .-+...|..-.......++++.|..+-.+.++.. +.+...+..-...+...++.++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7777776432 2233334344444556778888888888877765 33566777777888899999999999986653
Q ss_pred -ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-CCchHHHHHHHHHHHHHhCCCCc-hhH
Q 044352 348 -KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVL-SACSH-GGLVEKGLEIFRSMKERYGVKIS-KEH 423 (544)
Q Consensus 348 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~ 423 (544)
-+..+|..|+.+|...|++.+|...-+..... ++.+..++..+. ..|.. ...-++|..++++..+ +.|+ ...
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~A 440 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPA 440 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHH
Confidence 46789999999999999999999988887765 456777777663 34433 3345788999888764 3555 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQV-PMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
...+.+.+...|.+.+++.++++. ...||....+.++..+...+.+++|...|..++.++|+|..+...+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 778888999999999999999986 4788999999999999999999999999999999999876665544
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.5e-10 Score=106.51 Aligned_cols=456 Identities=13% Similarity=0.046 Sum_probs=259.3
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCch--hHHHHHHHHHhc
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVF--MLNWMVMASAFT 91 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~ 91 (544)
.+..=++.+..+|++++|.+...+++.. |.+.+ ++..-+-++.+.+++++|+.+.+.-...... -+-.-+.+..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~-a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED-AIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh-hHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4555567788999999999999999999 66666 8888888889999999999776665421111 112234455678
Q ss_pred CCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhCCCHHHHHH
Q 044352 92 GNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV-SVGNALIDMYSKCGLLCSARR 169 (544)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 169 (544)
+..++|+..++- ..++ ..+...-.+.+.+.|++++|..+|..+.+.+.+.-. .....++.+ +-.-.+.
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ- 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-
Confidence 999999999883 3333 336666677888999999999999999887632211 111222211 1111121
Q ss_pred HHhhccCCChhhHHHH---HHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 044352 170 VFHGMFERDVVSWTSM---ISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFV 246 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (544)
+.+..+.....+|..+ ...++..|++.+|+++++...+.+.+ .+ ..++.. -.++-.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l-~~~d~~-eEeie~e------- 222 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KL-EDEDTN-EEEIEEE------- 222 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hh-cccccc-hhhHHHH-------
Confidence 3444443333333333 33456678888888888876322100 00 000000 0000000
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHhhccCchHH--------------HHHHHHH
Q 044352 247 PDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGV---LQAGGLTGSIQI--------------GREIHAL 309 (544)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~--------------a~~~~~~ 309 (544)
.+ ..-..|...+-..|+..+|..+|...+... ++|....... +.+.....++.. +...+..
T Consensus 223 l~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 223 LN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence 00 011223344445555555555555555443 2222111111 111111111111 0111111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc-HHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC--
Q 044352 310 VCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN-VASWNAMIGCYGK--HGMVDSSIELFERMLEEGMRAN-- 384 (544)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~-- 384 (544)
+.... ......-+.++.. -.+..+.+.++........ ...+..++....+ ...+..+.+++...-+. .|.
T Consensus 301 Ls~~q-k~~i~~N~~lL~l--~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s 375 (652)
T KOG2376|consen 301 LSKKQ-KQAIYRNNALLAL--FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKS 375 (652)
T ss_pred HHHHH-HHHHHHHHHHHHH--HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchh
Confidence 11110 0011111222222 2456677777777666543 2344444444332 23577788888887765 333
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHH--------HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFR--------SMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-----MYV 451 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~ 451 (544)
..+....+......|+++.|.+++. .+.+ +...+.+...+...+.+.++.+.|..++..+. ..+
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 3455666677889999999999998 4432 23345567778888888888777777776652 112
Q ss_pred Chh----HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 452 TNS----MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 452 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
... .+.-++..-.+.|+-++|...++++++.+|++..++..+..+|++. +.+.|..+=+.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 222 3333333445679999999999999999999999999999999776 45666665433
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=8.5e-12 Score=109.45 Aligned_cols=283 Identities=11% Similarity=0.027 Sum_probs=225.1
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHH
Q 044352 226 RRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGRE 305 (544)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (544)
..|++.+|++...+-.+.+ .-....|..-+.+--+.|+.+.+-.++.+..+..-.++..............|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999988876 334456666678888999999999999999876435566667777788899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc-----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 044352 306 IHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN-----------VASWNAMIGCYGKHGMVDSSIELFE 374 (544)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~ 374 (544)
-...+.+.+. .++.+......+|.+.|++.....++..+.+.+ ..+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998874 467888999999999999999999999887632 2368888887777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC
Q 044352 375 RMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVT 452 (544)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 452 (544)
..-.+ .+.++..-..++.-+...|+.++|.++..+..++ +..|. ...++ ...+-++...-++..++.. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 77665 5667888888899999999999999999999887 55555 11111 2234555554444444331 2345
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 453 NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+..+.+++..|.+.+.+.+|...|+.+++..| +...+..++.++.+.|+..+|.+.+++.+-.-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 58889999999999999999999999999998 68999999999999999999999999887443
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=3.6e-09 Score=98.59 Aligned_cols=495 Identities=10% Similarity=0.021 Sum_probs=326.5
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhc--------CCChHHHHHHhccCC---
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAG--------CGDVNSARLVFDKIP--- 74 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~--- 74 (544)
..+|.|-..+.+.+..... .-...-..+|+.+++. |.+.. +|...+..-.. ...++..-..|++..
T Consensus 21 lRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~syk-iW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m 98 (835)
T KOG2047|consen 21 LRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYK-IWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM 98 (835)
T ss_pred HcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Confidence 4567777777777775544 2334456789999999 77777 88877743211 122333333444332
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 044352 75 NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREF-IYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNA 153 (544)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 153 (544)
..=+..|-..+..+..+|+.......|...+.. -+......|...+......+-++-+..++++.++. ++...+-
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 344567888888889999999999999887753 22334456777888888888899999999998865 3444677
Q ss_pred HHHHHHhCCCHHHHHHHHhhccCC----------ChhhHHHHHHHHhccCCh---hHHHHHHHHHHHcCCCCC--HhhHH
Q 044352 154 LIDMYSKCGLLCSARRVFHGMFER----------DVVSWTSMISGYCNVSKV---DEAVVLFERMKLEGLEPN--QFTYN 218 (544)
Q Consensus 154 l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~ 218 (544)
.+..++..+++++|-+.+..+... +...|..+-....++-+. -.+..+++.+... -+| ...|.
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~ 252 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWC 252 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHH
Confidence 788889999999999988888552 344566666655554332 2334444444432 334 34678
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcC----------------C------CHHHHHHHHHHHH
Q 044352 219 AIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQS----------------K------RENEALKLFKGML 276 (544)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~ 276 (544)
+|...|.+.|.+++|.++|++.... ..++..|..+.+.|++- + +++-.+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 8999999999999999999987765 44555555555555431 1 1223334444444
Q ss_pred HcC-----------CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044352 277 VSG-----------IKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG-----LHIDVFTGSALIDMYSKCGSLKDART 340 (544)
Q Consensus 277 ~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~ 340 (544)
... -+.+...+..-+ -...|+..+....+.++.+.- +......|..+...|-..|+++.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 321 011222232222 233455666677777766541 11124577888999999999999999
Q ss_pred HHHhcCCcc---H----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHh
Q 044352 341 LFEITRIKN---V----ASWNAMIGCYGKHGMVDSSIELFERMLEEGMR----------A-------NEVTLISVLSACS 396 (544)
Q Consensus 341 ~~~~~~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~ 396 (544)
+|++..+-+ + .+|..-...-.++.+++.|++++++.....-. | +...|...+....
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 999887632 2 35666666667888999999999887652111 1 1234555666666
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC-hhHHHHHHHHHhh---cCCh
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP---MYVT-NSMAGAFRNGCNI---HGRR 469 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~~l~~~~~~---~g~~ 469 (544)
..|-++....+|+++.+..- .++.+.-..+..+....-++++.++|++-. ..|. ...|+.++.-+.+ ....
T Consensus 489 s~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 77888889999999887522 244444555555667778899999999853 3444 3477777665443 3479
Q ss_pred HHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 470 DLAVTMGEEFFEMGLRKP--DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+.|+.+|+++++.-|+.. ..|..++..-.+-|....|+.+|+++..
T Consensus 567 EraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999777422 3456666666777999999999998643
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=1.7e-09 Score=100.86 Aligned_cols=451 Identities=11% Similarity=0.041 Sum_probs=287.6
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHH
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASA 89 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 89 (544)
.+++.-+.-|...+++...+...+.+++. +.... +....+-.+...|+-++|........ ..+..+|..+.-.+-
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE-SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 35666666677999999999999999999 55566 66777777788899999999988766 456778999998888
Q ss_pred hcCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 044352 90 FTGNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSAR 168 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 168 (544)
...++++|+..|+.+... .| |...+.-+.-.-++.|+++.......++.+.. +.....|..++.++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999984 44 44566666555578888888888888887763 445566788888888889999999
Q ss_pred HHHhhccC-----CChhhHHHH------HHHHhccCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChHHHHHH
Q 044352 169 RVFHGMFE-----RDVVSWTSM------ISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY-NAIIASYARRGDSNAAFAF 236 (544)
Q Consensus 169 ~~~~~~~~-----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~ 236 (544)
.+++...+ ++...+... .......|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 88887743 333333322 24456678888888877665432 2233333 3345667788999999999
Q ss_pred HHHhhhCCCCCCHhHHHHHH-HHHHcCCCHHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHhhccCchHHHHHHHHHHHHc
Q 044352 237 FSRMTAEGFVPDLVTWNAMI-SGFAQSKRENEAL-KLFKGMLVSGIKPNNVTVTGV-LQAGGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 313 (544)
+..+... .||...|.... .++.+-.+--+++ .+|...-+. .|.......+ +.......-.+....++....+.
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 9999987 56666665544 4443333333333 555554432 2221111111 11112222234445566666777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHhcC--------------CccHH--HHHHHHHHHHhcCChHHHHHHH
Q 044352 314 GLHIDVFTGSALIDMYSKCGSLKD----ARTLFEITR--------------IKNVA--SWNAMIGCYGKHGMVDSSIELF 373 (544)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~--------------~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 373 (544)
|+++ ++..+...|-.-...+- +..+...+. .|... ++.-++..+-..|+++.|...+
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7554 33333333322111111 111111111 12233 3345666777888999999988
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-
Q 044352 374 ERMLEEGMRANE-VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYV- 451 (544)
Q Consensus 374 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 451 (544)
+..+.+ .|+. ..|..-.+.+...|++++|..++++..+. ..+|...-..-+.-..+.++.++|.++........
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 888885 5543 45666667788888999998888888652 33444433356666778888888888876653111
Q ss_pred C--------hhHHHHH--HHHHhhcCChHHHHHHHHHHHH
Q 044352 452 T--------NSMAGAF--RNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 452 ~--------~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
+ .-.|..+ +.+|.+.|++..|++-|..+.+
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 1 1133332 2356677777777766655544
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=6e-12 Score=111.44 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
....+..+...+...|++++|...+++... .+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677778888888999999888886653 345678888888999999999999999998863 4466778888888
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+...|++++|...++++......+.....+..++.++...|++++|...+++.. .+.+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988642223345677788899999999999999998864 334566788888899999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888899999999999999999999998877653
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=4.9e-10 Score=104.45 Aligned_cols=437 Identities=8% Similarity=-0.005 Sum_probs=228.8
Q ss_pred cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRV 170 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 170 (544)
.+++...+...+.+++. .+-...|.....-.+...|+.++|........+.. ..+.+-|..+.-.+....++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44555555555555542 22233333333333445555566655555544432 33444455555555555566666666
Q ss_pred HhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CC
Q 044352 171 FHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG-FV 246 (544)
Q Consensus 171 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 246 (544)
|..... .|...|.-+.-.-++.|+++........+.+.. +.....|..+..++.-.|++..|..+++...+.. -.
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 655533 334455554444455555555555555554431 1223344455555555566666666666555442 13
Q ss_pred CCHhHHHHHH------HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCchHHHHHHHHHHHHcCCCCCH
Q 044352 247 PDLVTWNAMI------SGFAQSKRENEALKLFKGMLVSGIKPNNVTV-TGVLQAGGLTGSIQIGREIHALVCRMGLHIDV 319 (544)
Q Consensus 247 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (544)
|+...|.... .....+|.+++|++.+..-... ..|...+ ..-...+.+.++.++|..++..+.... +.+.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhH
Confidence 4444333222 2234455556665555443321 1122221 222334455666666666666666654 2233
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHhcCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 320 FTGSALIDMYSKCGSLKDA-RTLFEITRIK---NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSAC 395 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (544)
..|..+..++.+-.+.-++ ..+|....+. ....-..=+.......-.+..-.++..+.+.|+++--..+..+-.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk-- 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK-- 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh--
Confidence 3333344444322222222 2455443321 000000001111111223334455666677776653333332221
Q ss_pred hcCCchHHHHHHHHHHHHHh-C------------CCCchhHH--HHHHHHHHhcCCHHHHHHHHHhCC-CCCCh-hHHHH
Q 044352 396 SHGGLVEKGLEIFRSMKERY-G------------VKISKEHY--ACVVDMLCRSGRMVEAYDLLRQVP-MYVTN-SMAGA 458 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~-~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~ 458 (544)
.-...+-..++.-.+.... + -+|....| .-++..+-+.|+++.|..+++.+. ..|+. ..|..
T Consensus 332 -~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~ 410 (700)
T KOG1156|consen 332 -DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLV 410 (700)
T ss_pred -chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHH
Confidence 1111111111111111100 1 14554444 456677889999999999999875 45553 45556
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CCCCceEEEecC--
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ-----KQPGFSRVEKRN-- 531 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~-- 531 (544)
=++.+.+.|+.++|..+++++.+++-.|...-...+.-..++++.++|.++.-...+.|.. .+..++|..+++
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhH
Confidence 6678899999999999999999999767776668899999999999999999988876642 345788988887
Q ss_pred -eeecc
Q 044352 532 -EFVEK 536 (544)
Q Consensus 532 -~~~~~ 536 (544)
++..|
T Consensus 491 ay~r~~ 496 (700)
T KOG1156|consen 491 AYLRQN 496 (700)
T ss_pred HHHHHH
Confidence 55543
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=8.3e-10 Score=106.44 Aligned_cols=483 Identities=11% Similarity=0.038 Sum_probs=252.2
Q ss_pred CccccCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc--ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCch
Q 044352 2 NRLIFPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN--DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVF 79 (544)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (544)
++.++.| ++.+|..++..|+..|+++.|- +|..|.-. |-+.. .++.++....+.|+.+.+. .|.+.
T Consensus 17 e~~gi~P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~-vf~~lv~sh~~And~Enpk-------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILP---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREG-VFRGLVASHKEANDAENPK-------EPLAD 84 (1088)
T ss_pred HHhcCCC---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccch-hHHHHHhcccccccccCCC-------CCchh
Confidence 3455555 4479999999999999999988 88777666 66666 8888998888888876655 77888
Q ss_pred hHHHHHHHHHhcCCHHH---HHHHHHHHHh----cccccCHHHHHHHHHHhhCCCChHHHH---------HHHHHHHHcC
Q 044352 80 MLNWMVMASAFTGNFQE---AIGYFSLMRE----FIYRCNKFTFSIVLKACVGLLDIKKGK---------QVHAVATQMG 143 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~---A~~~~~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~a~---------~~~~~~~~~~ 143 (544)
+|..+..+|...||..- ..+.++.... .|+.- ..-+ .++...+.-+-...|. .++....+.+
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs-~e~~-fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGS-PERW-FLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCc-HHHH-HHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 2221222211 11110 0111 1111011111111111 1122222221
Q ss_pred C-CCChhHHH---HHHHHHHh-CCCHHHHHHHHhhccC-CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhH
Q 044352 144 F-ENDVSVGN---ALIDMYSK-CGLLCSARRVFHGMFE-RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTY 217 (544)
Q Consensus 144 ~-~~~~~~~~---~l~~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (544)
. .|...-++ ..++-+.. ...+++-......... ++..++.+.+.+-...|+.+.|..++.+|++.|++.+.+-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 0 01100000 01111111 1223333333333333 56666666666666667777777777777766666666655
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 044352 218 NAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLT 297 (544)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (544)
-.++-+ .++...+..++.-|...|+.|+..|+...+-.+..+|....+ +.| .+....++.-+.+-.-.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAACR 310 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHhc
Confidence 555544 566666666666666666677666666655555554431111 112 12222222222222222
Q ss_pred Cc-----hH--HHHHH---HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc-------cHHHHHHHHHHH
Q 044352 298 GS-----IQ--IGREI---HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK-------NVASWNAMIGCY 360 (544)
Q Consensus 298 ~~-----~~--~a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~ 360 (544)
|. .+ ....+ +....=.|......+|....... ..|+-+...++...+..| ++..+..++.-|
T Consensus 311 g~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 311 GLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred ccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 21 10 00111 11111123333334444433322 246555555555544432 333443333333
Q ss_pred Hhc----------------------CChHHHHHHHHHHHHcCCCCCH----------------------------HHHHH
Q 044352 361 GKH----------------------GMVDSSIELFERMLEEGMRANE----------------------------VTLIS 390 (544)
Q Consensus 361 ~~~----------------------g~~~~A~~~~~~~~~~~~~~~~----------------------------~~~~~ 390 (544)
.+. .+..+..+.+... .||. ..-+.
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 221 1111111111111 1111 12233
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHhh
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-----MYVTNSMAGAFRNGCNI 465 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~ 465 (544)
++..|+..-+..+++..-++.... -+ ...|..++..+....+.+.|..+.++.. ...+..-+..+...+.+
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 444444444445555444433221 22 2567788888888888889988888874 23344556677778888
Q ss_pred cCChHHHHHHHHHHHHcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 044352 466 HGRRDLAVTMGEEFFEMG---LRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQK 520 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 520 (544)
.+....+..++++..+.- |.-...+..+.......|+.+.-.++.+-+...|+.-
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888998888887632 3334556667777777888888888888887777655
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=3.1e-11 Score=113.82 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhC--CCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C--CC-
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYG--VKI----SKEHYACVVDMLCRSGRMVEAYDLLRQVP-------M--YV- 451 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~- 451 (544)
++.+...|...+++++|..++++..+.+. +.+ -..++..+...|...|++++|.++++++. . .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44445556666666666666665544322 111 23467777788888888888888877653 1 11
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHc----CCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM----GLRKP---DGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
....++.++..|.+.+++++|.++|.+...+ +|++| .+|..|+.+|.++|++++|+++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2345677777888888888888888887653 34444 568889999999999999999988886
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.4e-09 Score=92.57 Aligned_cols=454 Identities=11% Similarity=0.022 Sum_probs=268.7
Q ss_pred HhhcCCChHHHHHHhccCCCC---C-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHH
Q 044352 56 VYAGCGDVNSARLVFDKIPNP---N-VFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKK 131 (544)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 131 (544)
-+....++..|+.+++--... . ..+-..+..++.+.|++++|+..|..+.+.. .|+......+.-...-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344567777787777654411 1 1222334566678899999999988887643 4555555555555555677777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q 044352 132 GKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLE 211 (544)
Q Consensus 132 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (544)
|.++-... +.++--...++..-.+.++-++-..+-+.+... ..--.++.+.......+.+|.++|.+.... .
T Consensus 110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 77765543 333333445555556667766655554444332 233334555555556788899999888755 4
Q ss_pred CCHhhHHHH-HHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 212 PNQFTYNAI-IASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGV 290 (544)
Q Consensus 212 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (544)
|+-...|.. .-+|.+..-++-+.+++.-..+.- +.++..-|..+....+.=+-..|.+-.+.+.+.+-..-+..-...
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 444444433 345667777777777777766551 334445554444444433333444445555443322111111111
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCC-----
Q 044352 291 LQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGM----- 365 (544)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 365 (544)
-.-+.--.+-+.|.+++--+.+. -+.+-..++-.|.+.+++.+|..+.+.+....+.-|-.-...+...|+
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 11122334456677766655543 233445667778999999999999999987666555433333444433
Q ss_pred --hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044352 366 --VDSSIELFERMLEEGMRANE-VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 366 --~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 442 (544)
..-|...|+-.-..+..-|. .--..+..++.-..++++.+.++..+.. -+..|...-..+..+++..|.+.+|.+
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--YF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--YFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 33455555544444322221 1122334444455678899999888866 344455555678999999999999999
Q ss_pred HHHhCCC--CCChhHH-HHHHHHHhhcCChHHHHHHHHHHHHcC-CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 443 LLRQVPM--YVTNSMA-GAFRNGCNIHGRRDLAVTMGEEFFEMG-LRKP-DGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 443 ~~~~~~~--~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+|-++.. -.+..+| ..++++|.+.+..+.|-.+ +++.+ |.+. ..+..++..|.+.|++=-|.+.|+.+...+
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 9988752 1244444 4556688899999887554 45555 4333 334556788999999999999999887654
Q ss_pred CCCCCCceEEEecC
Q 044352 518 VQKQPGFSRVEKRN 531 (544)
Q Consensus 518 ~~~~~~~~~~~~~~ 531 (544)
|.| ..|---+|
T Consensus 492 --P~p-EnWeGKRG 502 (557)
T KOG3785|consen 492 --PTP-ENWEGKRG 502 (557)
T ss_pred --CCc-cccCCccc
Confidence 333 34544443
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=2.9e-12 Score=103.89 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDML 431 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (544)
+...|...|...|++..|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+ --+.+..+.|..+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 45667788999999999999999999863 44667888889999999999999999999886 3466778999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHH
Q 044352 432 CRSGRMVEAYDLLRQVPMYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 507 (544)
|..|++++|...|+++...|. ..+|.+++.+..+.|+++.|...|+++++++|+++.+...++..+.+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998753433 4578888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEEec
Q 044352 508 NLRKIMKEKNVQKQPGFSRVEKR 530 (544)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~ 530 (544)
.++++....+. .....-|+-++
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHH
Confidence 99998876654 44444454443
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=2.8e-09 Score=101.59 Aligned_cols=407 Identities=11% Similarity=-0.005 Sum_probs=243.5
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-CCChhHHHHH
Q 044352 76 PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGF-ENDVSVGNAL 154 (544)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 154 (544)
.++..|..+.-+..+.|+++.+.+.|++.... .......|..+...+...|.-..|..+++......- ++++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45566666777777777777777777776643 223455666666667777777777777766554321 2233333333
Q ss_pred HHHHH-hCCCHHHHHHHHhhccC--------CChhhHHHHHHHHhcc----C-------ChhHHHHHHHHHHHcCCCCCH
Q 044352 155 IDMYS-KCGLLCSARRVFHGMFE--------RDVVSWTSMISGYCNV----S-------KVDEAVVLFERMKLEGLEPNQ 214 (544)
Q Consensus 155 ~~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~ 214 (544)
...|. +.+..+++..+..++.. .....|..+.-+|... . ...++++.+++..+.+ +.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 33333 33555555555544422 2233444444444321 1 1345566666665543 2222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 044352 215 FTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAG 294 (544)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (544)
...-.+.--|+..++++.|.+..++..+.+-.-+...|..|.-++...+++.+|+.+.+...+.- .-|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22233444566677888888888887777546677788888888888888888888877766431 11111111111122
Q ss_pred hccCchHHHHHHHHHHHHc----------------------------CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 044352 295 GLTGSIQIGREIHALVCRM----------------------------GLHIDVFTGSALIDMYSKCG---SLKDARTLFE 343 (544)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 343 (544)
...++.+++......+... .....+.++..+.......+ ..+.....+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 2233433333322221110 00111222222221111100 1111111111
Q ss_pred hcCCcc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCC
Q 044352 344 ITRIKN------VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGV 417 (544)
Q Consensus 344 ~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (544)
....++ ...|......+...++.++|...+.+.... .+-....|......+...|.+.+|.+.|..... --
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 111222 235667777888899999999999888775 345667788777888899999999999988875 33
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHH--HHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYD--LLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
|.+.....+++.++.+.|+..-|.. ++..+. .+.++..|..++..+.+.|+.+.|...|..++++.+.+|.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 4557889999999999998777776 887764 5667889999999999999999999999999999977764
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=5.7e-12 Score=107.20 Aligned_cols=223 Identities=11% Similarity=-0.019 Sum_probs=172.4
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cHHHHHHHHHHHHhcCC
Q 044352 289 GVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--K-NVASWNAMIGCYGKHGM 365 (544)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 365 (544)
.+.++|.+.|-+.+|.+.++...+. .|-+.+|..+.+.|.+.++...|+.++..... | ++.....+.+.+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455556666666666666555554 24455667777777777777777777776654 2 44445556677777888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 366 VDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLR 445 (544)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 445 (544)
.++|.++|+...+. .+.+......+...|.-.++.+-|+.+|+++.+. |. .+++.|..++-++.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888876 2456667777777788888899999999998886 64 477788888888888889998888887
Q ss_pred hCC---CCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 446 QVP---MYVT--NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 446 ~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
++. ..|+ .+.|.++.......||+..|.+.|+-++..+|++..+++.|+-+-.+.|+.++|..++......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 763 2233 5689999888999999999999999999999999999999999999999999999999887654
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=1.8e-09 Score=103.47 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 044352 218 NAIIASYARRGDSNAAFAFFSRMTAEGFVPD-LVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL 296 (544)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (544)
..+...|...|++++|++++++..++ .|+ +..|..-.+.+-+.|++.+|.+.++.....+ .-|...-+.....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 44455566667777777777666665 343 5556666666666777777777666666544 3455555555556666
Q ss_pred cCchHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 044352 297 TGSIQIGREIHALVCRMGLHIDVF--------TGSALIDMYSKCGSLKDARTLFEIT 345 (544)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~ 345 (544)
.|++++|..++....+.+..|... .......+|.+.|++..|+..|..+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666666665554322111 1123455666666666666555433
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=6.3e-11 Score=117.48 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=138.3
Q ss_pred ChHHHHHHhccCC---CCCchhHHHHHHHHH---------hcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCCh
Q 044352 62 DVNSARLVFDKIP---NPNVFMLNWMVMASA---------FTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDI 129 (544)
Q Consensus 62 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 129 (544)
++++|+..|++.. |.+...|..+..++. ..+++++|...+++..+.+. -+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCH
Confidence 3456666666655 233344444444332 22346777777777776431 1445566666666677777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCCh---hhHHHHHHHHhccCChhHHHHHHHHHH
Q 044352 130 KKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDV---VSWTSMISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 130 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
++|...++++.+.+ |.+...+..+..++...|++++|...+++..+.++ ..+..++..+...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 77777777777765 45566666677777777777777777777654222 122333444555677777777777766
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCH
Q 044352 207 LEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD-LVTWNAMISGFAQSKRENEALKLFKGMLVSG-IKPNN 284 (544)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 284 (544)
....+-+...+..+..++...|++++|...+.++... .|+ ....+.+...|...| ++|...++.+.+.. ..+..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 5431223444566666777778888887777776544 333 333444555566666 36666666655421 12222
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 044352 285 VTVTGVLQAGGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (544)
..+ .-..+.-.|+.+.+... +++.+.
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222 33334445555555544 555544
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.6e-10 Score=113.12 Aligned_cols=262 Identities=12% Similarity=0.056 Sum_probs=180.8
Q ss_pred CCHhHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh---------ccCchHHHHHHHHHHH
Q 044352 247 PDLVTWNAMISGFAQ-----SKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGG---------LTGSIQIGREIHALVC 311 (544)
Q Consensus 247 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 311 (544)
.+...|...+.+... .+.+++|...|++.++. .|+ ...+..+..++. ..+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 344545454444211 23457888888888865 444 334444433322 3345788999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 044352 312 RMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN-EVT 387 (544)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 387 (544)
+.+ +.+..++..+..++...|++++|...|++... .+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 876 34677888888888899999999999988764 34567888889999999999999999999985 443 333
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhh
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNI 465 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 465 (544)
+..++..+...|++++|...++++... ..+.++..+..++.+|...|++++|...+.++. ..|+ ...+..+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 344455566789999999999998764 223345567778889999999999999998874 3343 3345555556666
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 466 HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.| ++|...++.+++..-..+.....+..++.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788877777764422222222366677777888777776 7777654
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=105.49 Aligned_cols=235 Identities=11% Similarity=-0.023 Sum_probs=168.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044352 253 NAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKC 332 (544)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (544)
+.+.++|.+.|.+.+|.+.++..+++ .|-+.||..+-++|.+..+...|..++.+-.+.- +.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34555566666666666666555544 4444555555556666666666666555555442 33444445566667777
Q ss_pred CCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 044352 333 GSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFR 409 (544)
Q Consensus 333 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 409 (544)
++.++|.++++...+ .++.....+...|.-.++++-|+.+|++++..|+ -++..|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 788888888876654 3555566666778888899999999999999874 477788888888889999999999888
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 410 SMKERYGVKIS--KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 410 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
+.... -..|+ .++|..+.......|++.-|.+.|+-.. ...+..++++++-.-.+.|++++|+.++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88764 33333 5688888888889999999999998764 4445678899988888999999999999999998886
Q ss_pred CchhHHH
Q 044352 486 KPDGFVM 492 (544)
Q Consensus 486 ~~~~~~~ 492 (544)
-......
T Consensus 462 m~E~~~N 468 (478)
T KOG1129|consen 462 MAEVTTN 468 (478)
T ss_pred ccccccc
Confidence 5544333
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-08 Score=90.13 Aligned_cols=300 Identities=9% Similarity=-0.051 Sum_probs=215.2
Q ss_pred CCCHhhHHHHHHHHH--hcCChHHHHHHHHHhhhC-CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH-H
Q 044352 211 EPNQFTYNAIIASYA--RRGDSNAAFAFFSRMTAE-GFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNV-T 286 (544)
Q Consensus 211 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 286 (544)
+|...+....+.+++ -.++...+...+-.+... -++.|+.....+..++...|+.++|+..|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 344334343444333 344444444444443332 34667888899999999999999999999998743 44433 2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc---cHHHHHHHHHHHHhc
Q 044352 287 VTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK---NVASWNAMIGCYGKH 363 (544)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 363 (544)
.....-.+...|+.+....+...+.... ..+...|..-+......++++.|+.+-++..+. ++..+-.-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 3333344566778887777776665542 123333444444555678999999998877753 445565556778899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH-HHHH-hcCCHHHHH
Q 044352 364 GMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV-DMLC-RSGRMVEAY 441 (544)
Q Consensus 364 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 441 (544)
|++++|.-.|+..... -+-+...|..++.+|...|.+.+|.-.-..... -++.+..+..-++ ..+. .-..-++|.
T Consensus 348 ~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999998884 234778999999999999999999988888776 3455666665553 2332 223457899
Q ss_pred HHHHhCC-CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 442 DLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 442 ~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++++.. ..|+ ..+.+.++..+...|.++.++.++++.+...| +...+..|+..+...+.+++|.+.|..++..+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9998864 5565 45677788889999999999999999999888 57889999999999999999999999887654
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.5e-08 Score=93.82 Aligned_cols=416 Identities=13% Similarity=0.049 Sum_probs=246.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 044352 83 WMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCG 162 (544)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (544)
+=+.-+...|++++|+....+++..+ +-+...+..-+.+.++.+.+++|+.+.+.-... ..+...+..-+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33556677889999999999999854 345566777777888999999998665432211 111111122344556789
Q ss_pred CHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044352 163 LLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTA 242 (544)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (544)
..++|...++.+.+.+..+...-...+.+.|++++|+++|..+.+.+.+ +... ....++... +--..+. +.+...
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~-~~r~nl~a~-~a~l~~~-~~q~v~- 168 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDE-ERRANLLAV-AAALQVQ-LLQSVP- 168 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHH-HHHHHHHHH-HHhhhHH-HHHhcc-
Confidence 9999999999776667667778888899999999999999999866532 2211 111111111 0001111 222222
Q ss_pred CCCCCCHhHHHH---HHHHHHcCCCHHHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHhhccCchHHHHH
Q 044352 243 EGFVPDLVTWNA---MISGFAQSKRENEALKLFKGMLVS-------GIKPNN-------VTVTGVLQAGGLTGSIQIGRE 305 (544)
Q Consensus 243 ~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 305 (544)
..| ..+|.. ..-.++..|++.+|++++....+. +-..+. ..-..+..++...|+..+|..
T Consensus 169 --~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 169 --EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred --CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 123 223333 345677899999999999988321 111111 122345556778999999999
Q ss_pred HHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH-H-HHHHHHHhcCCcc--------------HHHH-HHHHHHHHhcCC
Q 044352 306 IHALVCRMGLHIDVF---TGSALIDMYSKCGSL-K-DARTLFEITRIKN--------------VASW-NAMIGCYGKHGM 365 (544)
Q Consensus 306 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~-~-~A~~~~~~~~~~~--------------~~~~-~~l~~~~~~~g~ 365 (544)
++..+........+. ..|.++. .....++ + .++..++...... .... +.++..| .+.
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999887443221 2222222 2211111 1 2223333222111 1111 2222222 233
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHH
Q 044352 366 VDSSIELFERMLEEGMRANEVTLISVLSACS--HGGLVEKGLEIFRSMKERYGVKIS-KEHYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 442 (544)
.+.+.++...... ..|... +..++..+. +...+..+.+++....+ +.+.+ ..+....+......|++..|.+
T Consensus 323 ~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444444333222 233333 333333322 22357788888888766 33333 4556666778889999999999
Q ss_pred HHH--------hCC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHhcCChHHH
Q 044352 443 LLR--------QVP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM-------GLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 443 ~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
++. .+. ..-.+.+...+...+.+.++.+.|..++.+++.- .+.....+..++..-.+.|+-++|
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 998 443 2334555566666788888888888888887761 122334566667777788999999
Q ss_pred HHHHHHHHhcC
Q 044352 507 ENLRKIMKEKN 517 (544)
Q Consensus 507 ~~~~~~~~~~~ 517 (544)
...++++.+.+
T Consensus 478 ~s~leel~k~n 488 (652)
T KOG2376|consen 478 SSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHhC
Confidence 99999998854
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.4e-09 Score=95.22 Aligned_cols=432 Identities=12% Similarity=-0.006 Sum_probs=217.3
Q ss_pred HHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCH
Q 044352 19 LLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNF 94 (544)
Q Consensus 19 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 94 (544)
-.++....||++.|+..|.+++.. |++.. .|.....+|+..|++++|++--.+.. |.-+..|+....++.-.|++
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHV-LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccc-hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 345666778888888888888888 77777 77777778888888888777655544 33455677777777777888
Q ss_pred HHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH-----HHHHhCCCHHHHH
Q 044352 95 QEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALI-----DMYSKCGLLCSAR 168 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~ 168 (544)
++|+..|.+-++. .|+ ...+..+..++ ..+.+. +. .-.++..+..+. +.+...-.+..-+
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 8888888777763 343 34455555544 111111 10 011222222221 1111111111111
Q ss_pred HHHhhccCCChhhH------HHHHHHHhccCChhHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHhcCCh-HHHH
Q 044352 169 RVFHGMFERDVVSW------TSMISGYCNVSKVDEAVVLFERMKLEG-------LEPNQFTYNAIIASYARRGDS-NAAF 234 (544)
Q Consensus 169 ~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~-~~a~ 234 (544)
.. .+.++... ..++.+.......+.- .+...| ..|... -....-..++. ++..
T Consensus 153 ~~----~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 153 EI----IQKNPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERR 219 (539)
T ss_pred HH----hhcCcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccc----cCCCCCccchhHHHHH
Confidence 11 11111111 1111111111000000 000000 001000 00000000000 0000
Q ss_pred HHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC
Q 044352 235 AFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG 314 (544)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (544)
. ..-..-...+.+...+..+++.|++.+...++.. -+..-++....++...|.+......-....+.|
T Consensus 220 ------~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 220 ------V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred ------H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 0 0011123445566666666666766666666543 233334444455555555555554444444433
Q ss_pred CCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-
Q 044352 315 LHIDVFTGS-------ALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEV- 386 (544)
Q Consensus 315 ~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 386 (544)
.. ...-|+ .+..+|.+.++++.++..|++...+... -....+....++++...+...- +.|...
T Consensus 288 re-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~ 359 (539)
T KOG0548|consen 288 RE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAE 359 (539)
T ss_pred HH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHH
Confidence 21 111112 2334555566777777777664421100 0111222334444444443333 223221
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHh
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCN 464 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 464 (544)
-...-...+.+.|++..|+..|.+++.+ .|.|...|..-.-+|.+.|.+..|+.-.+... .++....|..=+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 1222244566778888888888887774 36667778888888888888888877766553 2333344544455666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 465 IHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
...++++|.+.|+++++.+|.+..+...+..+....
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 667888888888888888888888877777777654
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=1.3e-10 Score=105.49 Aligned_cols=231 Identities=9% Similarity=-0.076 Sum_probs=134.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044352 258 GFAQSKRENEALKLFKGMLVSG-IKPN--NVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGS 334 (544)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (544)
.....+..+.++..+.+++... ..|+ ...+......+...|+.+.|...|....+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3444566677777777777532 1222 2345566666777777778877777777765 3356777777777777788
Q ss_pred HHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 044352 335 LKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (544)
++.|...|+...+ .+..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...+.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8887777776653 23456677777777777788887777777764 343321122222234456777777777665
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHH--HHHHHhC-C-----CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 412 KERYGVKISKEHYACVVDMLCRSGRMVEA--YDLLRQV-P-----MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
.. ..+++...+ ...+...|+..++ .+.+.+. . .+....+|..++..+...|++++|+..|+++++.+
T Consensus 192 ~~--~~~~~~~~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWGW---NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccHH---HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43 223322211 2222334444332 2222221 1 11123467777777777777777777777777777
Q ss_pred CC-CchhHHHHHHH
Q 044352 484 LR-KPDGFVMLSNI 496 (544)
Q Consensus 484 p~-~~~~~~~l~~~ 496 (544)
|. .......++..
T Consensus 267 ~~~~~e~~~~~~e~ 280 (296)
T PRK11189 267 VYNFVEHRYALLEL 280 (296)
T ss_pred CchHHHHHHHHHHH
Confidence 53 33333334333
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1e-10 Score=103.55 Aligned_cols=192 Identities=14% Similarity=0.032 Sum_probs=136.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG 125 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 125 (544)
.+..++..+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 66777777777777777777777654 4445666777777777778888888777777643 2244556666677777
Q ss_pred CCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHH
Q 044352 126 LLDIKKGKQVHAVATQMGF-ENDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVL 201 (544)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (544)
.|++++|...++...+... +.....+..+..++...|++++|...+++... .+...+..+...+...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888777776431 22344566677777888888888888877754 2345677777888888888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044352 202 FERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTA 242 (544)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (544)
+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8887765 244556666677777788888888888777654
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=1e-08 Score=100.35 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYA----CVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAF 459 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 459 (544)
....|........+.+.+..|.+...+...-.....+...|+ .+.+.++..|.++.|..-+.......+......-
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 344555555555566666666665555432211122333333 3455667777787777666555433333322222
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+. ..-.|+++++.+.|++++.+.-.+. .....++......+..+.|...+=+...
T Consensus 1046 l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1046 LT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 21 2346789999999999998764433 3455566777778888888887655543
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=6.2e-09 Score=87.95 Aligned_cols=316 Identities=10% Similarity=0.006 Sum_probs=181.3
Q ss_pred HHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHH-HHHhhCCC
Q 044352 52 KLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV-LKACVGLL 127 (544)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~ 127 (544)
+.+..+.+..++++|++++..-. +.+....+.+..+|....++..|-+.++++.. ..|...-|..- .+.+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhc
Confidence 34444455566666666665543 23444555666666666666666666666655 33444433322 23344556
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHhCCCHHHHHHHHhhccC-CChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 128 DIKKGKQVHAVATQMGFENDVSVGNALI--DMYSKCGLLCSARRVFHGMFE-RDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 128 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.+..|+++...|... ++...-..-+ ...-..+++..+..+++..+. .+..+.+...-...+.|+++.|.+-|..
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 666666666655432 1111111111 122345677777777777763 5555555555566677788888777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-------------C---------------HhHHHHHH
Q 044352 205 MKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVP-------------D---------------LVTWNAMI 256 (544)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~l~ 256 (544)
..+-+--.....|+..+ ++.+.++++.|++...++..+|+.. | +..+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 76654344455666444 3445677777877777777665421 1 11234344
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044352 257 SGFAQSKRENEALKLFKGMLVS-GIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSL 335 (544)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 335 (544)
..+.+.++++.|.+.+.+|.-+ ....|+.|...+.-. -..+++.....-+.-+.+.++ ....+|..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 4567889999999888887532 234466666554432 234455566666666666653 4577888888899999889
Q ss_pred HHHHHHHHhcCCc-----cHHHHHHHHHHHH-hcCChHHHHHHHHHH
Q 044352 336 KDARTLFEITRIK-----NVASWNAMIGCYG-KHGMVDSSIELFERM 376 (544)
Q Consensus 336 ~~A~~~~~~~~~~-----~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 376 (544)
+.|-.++.+-... +...|+.+ .++. ..-..++|.+-++.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 9888888655432 23333332 3322 234555555554444
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.4e-08 Score=97.44 Aligned_cols=412 Identities=9% Similarity=0.074 Sum_probs=229.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC-----C
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKC-----G 162 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 162 (544)
+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ |.+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34455555555555443331 22122233444444555555555555555555554 33333334444433111 1
Q ss_pred CHHHHHHHHhhccC--CChhhHHHHHHHHhccCChh-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 163 LLCSARRVFHGMFE--RDVVSWTSMISGYCNVSKVD-EAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 163 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
+.+....+++++.. |...+...+.-.+.....+. .+...+..+...|+++ +|+.+-..|.......-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 34444555554432 11111111111111111222 3344555566666543 344444555544444444444444
Q ss_pred hhhC----C----------CCCCHh--HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHH
Q 044352 240 MTAE----G----------FVPDLV--TWNAMISGFAQSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTGSIQI 302 (544)
Q Consensus 240 ~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 302 (544)
.... + -+|+.. ++..+...|...|++++|++++++.+++ .|+ +..|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 4321 1 134443 4466678899999999999999999976 455 6678888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccH----------HHH--HHHHHHHHhcCChHHHH
Q 044352 303 GREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNV----------ASW--NAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~--~~l~~~~~~~g~~~~A~ 370 (544)
|...++....... .|..+-+..+..+.+.|++++|..++....+++. ..| .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999998873 3777778888999999999999999988776541 133 34567899999999998
Q ss_pred HHHHHHHHcC--C-------------CCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHhCCCC---------
Q 044352 371 ELFERMLEEG--M-------------RANEVTLISVLSACSHGGL-------VEKGLEIFRSMKERYGVKI--------- 419 (544)
Q Consensus 371 ~~~~~~~~~~--~-------------~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~--------- 419 (544)
..|....+.- + +.+..+|.-++...-+... ...|.+++-.+........
T Consensus 326 k~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~ 405 (517)
T PF12569_consen 326 KRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNE 405 (517)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 8877765530 1 1233344444443322211 2334445444433200000
Q ss_pred --chhHHHHHHHHH---HhcCCHHHHHHHHHh-----------C----C--CCCChhHHHHHHHHHhhcC-ChHHHHHHH
Q 044352 420 --SKEHYACVVDML---CRSGRMVEAYDLLRQ-----------V----P--MYVTNSMAGAFRNGCNIHG-RRDLAVTMG 476 (544)
Q Consensus 420 --~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~ 476 (544)
+..--..+..-. .+...-+++...-.+ . + ..+|+.. .-+.+.. =.++|.+++
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-----ekL~~t~dPLe~A~kfl 480 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-----EKLLKTEDPLEEAMKFL 480 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-----HHHhcCCcHHHHHHHHH
Confidence 000001111100 111111222211100 0 1 1222221 1223333 478899999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 477 EEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 477 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
+-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 481 ~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 481 KPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999988764
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=9.8e-10 Score=105.97 Aligned_cols=360 Identities=14% Similarity=0.112 Sum_probs=223.9
Q ss_pred HHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCC
Q 044352 99 GYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERD 178 (544)
Q Consensus 99 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 178 (544)
.++-.+...|+.|+..||..++.-|+..|+.+.|- +|.-|.-..++.+...++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667778899999999999999999999999998 9998888888888889999998888888877665 677
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh-CCCCCCHhHHHHHHH
Q 044352 179 VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTA-EGFVPDLVTWNAMIS 257 (544)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 257 (544)
..+|..+..+|...||... ++..++ ....+...+...|.-.....++..+.- .+..||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999776 222222 122345566667766666666655432 233455433 444
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044352 258 GFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKD 337 (544)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (544)
.....|-++.+++++..+....-. .+..+ +++-+.... ...+++........-.+++.++..++..-...|+.+.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhh
Confidence 555667788888877665432111 11111 233333222 2233333332222124788888888888888888888
Q ss_pred HHHHHHhcCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 338 ARTLFEITRIKNV----ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 338 A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
|..++..|.+.+. .-|..|+.+ .++...+..++..|.+.|+.|+..|+...+..+..+|....+.+
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e------- 292 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE------- 292 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc-------
Confidence 8888888886432 233344333 77888888888888888888888888887777777554222211
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh---------CC------CCCChhHHHHHHHHHhhcCChHHHHHHHHH
Q 044352 414 RYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQ---------VP------MYVTNSMAGAFRNGCNIHGRRDLAVTMGEE 478 (544)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (544)
+.+.+ ..+.+-+..-.-.| ..|.+.+++ .+ .......| .+..-...+|..++.+++-..
T Consensus 293 --~sq~~-hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~ 366 (1088)
T KOG4318|consen 293 --GSQLA-HGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQ 366 (1088)
T ss_pred --ccchh-hhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhh
Confidence 22222 22222222222222 222222221 11 11112233 333344457888888887777
Q ss_pred HHH----cCCCCchhHHHHHHHHHhcCC
Q 044352 479 FFE----MGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 479 ~~~----~~p~~~~~~~~l~~~~~~~g~ 502 (544)
+.. +.|.+..++..+..-|.+.-+
T Consensus 367 l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 367 LLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred hcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 654 446677777777777766533
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=2.2e-09 Score=97.47 Aligned_cols=214 Identities=16% Similarity=0.058 Sum_probs=142.5
Q ss_pred CchHHHHHHHHHHHHcC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHH
Q 044352 298 GSIQIGREIHALVCRMG-LH--IDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIE 371 (544)
Q Consensus 298 ~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 371 (544)
+..+.+..-+.++.... .. .....+......+...|+.++|...|++... .++..|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45556666666666432 11 2245677777788888999999888887653 356788888888889999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 044352 372 LFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMY 450 (544)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (544)
.|++.++. .| +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|.+.+.+....
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99888874 44 4567777888888889999999998888764 333322112222344567888888888654311
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHH-------HcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFF-------EMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
.++..|. ........|+..++ ..++.+. +++|+.+.+|..+|.++.+.|++++|+..|+++++.++
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1222222 12233334554433 2333333 45566778889999999999999999999988887654
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.1e-08 Score=84.84 Aligned_cols=416 Identities=13% Similarity=0.035 Sum_probs=261.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHHH
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGN-ALIDMYS 159 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 159 (544)
+.+++.-+.+..+++.|++++..-.+++. .+....+.+..+|....++..|...++++... .|...-|. --...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 56667777888899999999998888642 26667777888888999999999999998876 34444332 2345566
Q ss_pred hCCCHHHHHHHHhhccCCC-hhh--HHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 044352 160 KCGLLCSARRVFHGMFERD-VVS--WTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAF 236 (544)
Q Consensus 160 ~~~~~~~A~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 236 (544)
+.+.+..|+++...+...+ ... ...-.......+++..+..++++.... .+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 7899999999998887642 221 111223345678888999988887532 2444555566666789999999999
Q ss_pred HHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC
Q 044352 237 FSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH 316 (544)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (544)
|+...+-+--.....|+.. -+..+.++++.|+++..+++++|++..+..-..+..--...+.+.....+. ..
T Consensus 167 FqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh----~S--- 238 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH----QS--- 238 (459)
T ss_pred HHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH----HH---
Confidence 9998776434455677754 456688999999999999999886543221000000000000000000000 00
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 317 IDVFTGSALIDMYSKCGSLKDARTLFEITRIK-----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISV 391 (544)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 391 (544)
.-...++.-...+.+.++++.|.+.+-.|+.+ |+++...+.-.- ..+++....+-+.-++... +....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 01335555666778899999999999998853 666665554322 2456666677677777653 3467799999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCChhHHHHHHHHH--hhcC
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVK-ISKEHYACVVDMLCR-SGRMVEAYDLLRQVPMYVTNSMAGAFRNGC--NIHG 467 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~--~~~g 467 (544)
+-.||+..-++.|-.++.+-... ... .+... ..++.++.- .-..++|.+-++.+............+..- ...+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yl-y~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~ 394 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHL-TYKFLTPYL-YDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNR 394 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999888887543211 011 11222 234444443 345666666655442100000111111111 1111
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 468 ---RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 468 ---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
....|++-|++.+++-- .+....++.|.+..++.-+.++|+.-.+-.
T Consensus 395 dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 23445566666666652 367778899999999999999998876654
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=2.4e-07 Score=89.25 Aligned_cols=349 Identities=11% Similarity=0.088 Sum_probs=195.9
Q ss_pred hhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCC-----------CCc-hhHHHHHHHHHh
Q 044352 23 CMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN-----------PNV-FMLNWMVMASAF 90 (544)
Q Consensus 23 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~ 90 (544)
|.-.|+.+.|-+-.+.+.. .. +|..+++++.+..+.+-|.-++..|.. .|. ..=-.+......
T Consensus 738 yvtiG~MD~AfksI~~IkS----~~-vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS----DS-VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh----hH-HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 4456777766655544433 34 788888888888888877777766641 111 222222333456
Q ss_pred cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRV 170 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 170 (544)
.|..++|+.+|++..+ |..+-+.|-..|.+++|.++-+.-.+..+ ..+|......+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 7888888888888876 33444556678888888887765443322 23455555666667888888888
Q ss_pred HhhccC-----------------------CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 044352 171 FHGMFE-----------------------RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARR 227 (544)
Q Consensus 171 ~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (544)
|++... +|...|.-....+-..|+.+.|+.+|...++ |-.+++..+-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 876622 2333444444444556666666666665542 34455555666
Q ss_pred CChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHhhccC--chH
Q 044352 228 GDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSG--IKP--NNVTVTGVLQAGGLTG--SIQ 301 (544)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~--~~~ 301 (544)
|+.++|-++-++ ..|......|.+.|-..|++.+|+.+|.+...-. +.. ....-..+...+...+ +.-
T Consensus 952 Gk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred cCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence 777777666554 3456666778888888888888888887764210 000 0000011112222222 222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------------CccHHHHHHHHHHHHhcCChH
Q 044352 302 IGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR--------------IKNVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~ 367 (544)
.|-++|++. |. -+...+..|.+.|.+.+|+++-=.-. ..|+...+.-...++...+++
T Consensus 1026 ~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1026 SAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred HHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 333334332 11 12233445667777666665421111 134555555555555555555
Q ss_pred HHHHHHHHHHHc----------C----------------CCCCH----HHHHHHHHHHhcCCchHHHHHHHHHH
Q 044352 368 SSIELFERMLEE----------G----------------MRANE----VTLISVLSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 368 ~A~~~~~~~~~~----------~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (544)
+|..++-...+. + -.|+. ..+..+...|.++|.+..|.+-|.+.
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 555544332210 0 12222 35666777888888888888777665
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=4.7e-08 Score=84.41 Aligned_cols=313 Identities=14% Similarity=0.060 Sum_probs=170.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHH---HHHhccCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhc
Q 044352 152 NALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMI---SGYCNVSKVDEAVVLFERMKLEGLEPNQFTY-NAIIASYARR 227 (544)
Q Consensus 152 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 227 (544)
.-+...+...|++..|+..|....+.|+..|.++. ..|...|+...|+.-+.+.++. +||-..- ..-...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34556667778888888888888887777776664 4677778888888777777765 5654322 2233456778
Q ss_pred CChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 044352 228 GDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIH 307 (544)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (544)
|.+++|..=|+...+. .|+..+- ..++.+.-..++-. .....+..+...||...++...
T Consensus 120 Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred ccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHH
Confidence 8888888888888766 3322110 01111100011111 1112222333445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---cCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044352 308 ALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEI---TRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN 384 (544)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 384 (544)
..+.+.. +.+...+..-..+|...|++..|+.-++. +...+......+-..+...|+.+.++...++-++ +.|+
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 5555543 33455555555556666666655544432 2234444444555555555665555555555554 2343
Q ss_pred HHHHHH-------H------HHHHhcCCchHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 385 EVTLIS-------V------LSACSHGGLVEKGLEIFRSMKERYGVKIS-----KEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 385 ~~~~~~-------l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
...... + +......++|.++++..+...+. .|. ...+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 321110 0 11223455666666666665543 222 12233344555566677777766666
Q ss_pred CC-CCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 447 VP-MYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 447 ~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
+. ..| |..++..-+.+|.-...++.|+.-|+.+.+.+++|..+-..+
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 53 233 355566666666666677777777777777777665554443
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.7e-08 Score=92.43 Aligned_cols=414 Identities=14% Similarity=0.088 Sum_probs=256.5
Q ss_pred HHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCCh
Q 044352 54 VGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDI 129 (544)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~ 129 (544)
+.+....|+++.|+.+|-..+ |+|...|..-..+|+..|++++|++--.+.++ +.|+ ...|+....++...|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 455567899999999998876 66777788888899999999999888777776 4565 34788888888899999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH-HHHhhccCCChhhHHHHH-----HHHhccCChhHHHHHHH
Q 044352 130 KKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSAR-RVFHGMFERDVVSWTSMI-----SGYCNVSKVDEAVVLFE 203 (544)
Q Consensus 130 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~ 203 (544)
++|..-|.+-++.. +.+...+..+..++ ..+.+. +.| .++..|..+. +.+...-.+.. ++.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~---~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVK---ILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHH---HHH
Confidence 99999998888774 55666677777766 111111 111 1122222211 11111111111 111
Q ss_pred HHHHcCCCCCH-hhH---HHHHHHHHhcCChHHHHHHHHHhhhCC-------CCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 044352 204 RMKLEGLEPNQ-FTY---NAIIASYARRGDSNAAFAFFSRMTAEG-------FVPDLVTWNAMISGFAQSKRENEALKLF 272 (544)
Q Consensus 204 ~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (544)
.+. . .|+. ..| ..++.+.......+.- .....| ..|. .......-..++..+-.+
T Consensus 154 ~~~-~--~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 IIQ-K--NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC----KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred Hhh-c--CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc----cccCCCCCccchhHHHHH--
Confidence 111 1 1111 000 1111111110000000 000111 1111 000000000000000000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHH-
Q 044352 273 KGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVA- 351 (544)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 351 (544)
..--..-...+..+.....+++.+.+.+....+.. .+...++....+|...|.+..+...-+...+.+..
T Consensus 220 -------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 220 -------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred -------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 01112234567777888889999999999888876 46666777888899999888887776655543221
Q ss_pred ---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch-
Q 044352 352 ---------SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK- 421 (544)
Q Consensus 352 ---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 421 (544)
.+..+..+|.+.++++.++..|++.+.....|+.. .+....+++........- +.|..
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A 358 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKA 358 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHH
Confidence 22234446777889999999999977754343321 223344444444444322 23332
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
.-...-+..+.+.|++..|+..|.++. .+.|...|.+.+.+|.+.|.+..|+.-.+..++++|+....|..-+.++..
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 223334777889999999999999875 556778899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcC
Q 044352 500 DGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~ 517 (544)
..+|++|.+.|.+.++.+
T Consensus 439 mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988766
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.2e-06 Score=86.47 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 350 VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
+..|..+..+-.+.|...+|++-|-+ ..|+..|.-++..+.+.|.|++-..++....++ .-.|..+ ..++-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45688888888888888888776644 236677889999999999999999998888776 5455543 46788
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
+|++.++..+-.+++. .|+......++.-|...|.++.|.-+|.. ..-|..|+..+...|++..|.+.
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888776654 46666677777777788888887777653 35566777777777777777665
Q ss_pred HHH
Q 044352 510 RKI 512 (544)
Q Consensus 510 ~~~ 512 (544)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 444
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=3.1e-07 Score=87.44 Aligned_cols=423 Identities=14% Similarity=0.090 Sum_probs=234.8
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChH
Q 044352 52 KLVGVYAGCGDVNSARLVFDKIPNPNVF-MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIK 130 (544)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 130 (544)
..+.+|....++++|+.+-+-...|... .-.+.++++...|+-++|-++- .. +-. -...|+.|.+.|.+.
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCCch
Confidence 3466777777788877776655533322 2334455555566655554331 10 111 123345556666665
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCC--------------------------hh-hHH
Q 044352 131 KGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERD--------------------------VV-SWT 183 (544)
Q Consensus 131 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~-~~~ 183 (544)
+|.+....-.. +..|..+...+..++.+..-+++|-.+|+++..++ ++ .-.
T Consensus 633 ~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee 710 (1636)
T KOG3616|consen 633 KAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEE 710 (1636)
T ss_pred HHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHH
Confidence 55543221111 12333344444444444333444444444432211 11 111
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCC
Q 044352 184 SMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSK 263 (544)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (544)
.....+.+.|+++.|...|-+.. .....+.+.....+|.+|+.+++.+..+ .....-|..+...|...|
T Consensus 711 ~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKG 779 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccch
Confidence 22333444555555555443321 1223455566677888888888888766 334455777788888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 264 RENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFE 343 (544)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 343 (544)
+++.|.++|.+.- .+...+..|.+.|.++.|.++-.+.. |.......|..-..-+-+.|++.+|.+++-
T Consensus 780 dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 780 DFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 9998888886532 24556777888888888887765543 334456667666777778888888888888
Q ss_pred hcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhH
Q 044352 344 ITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEH 423 (544)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (544)
.+..|+. .|..|-+.|..+..+++.++-... .-..|...+..-+...|++..|...|-+.. -
T Consensus 849 ti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d 910 (1636)
T KOG3616|consen 849 TIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------D 910 (1636)
T ss_pred EccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------h
Confidence 7777764 356677788888877776653221 112345556666777788777777665542 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C-Chh--HHH------HHHHHH-------------hhcCChHHHHHHHHHHH
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVPMY-V-TNS--MAG------AFRNGC-------------NIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~--~~~------~l~~~~-------------~~~g~~~~A~~~~~~~~ 480 (544)
|.+-+.+|-..+.+++|.++-+.-... . ... .|. +....+ +..+-++-|..+.+-+.
T Consensus 911 ~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh
Confidence 444555566666666666665432200 0 000 010 011112 22333444433333222
Q ss_pred HcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEec
Q 044352 481 EMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKR 530 (544)
Q Consensus 481 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 530 (544)
+ ..-+.+...++..+...|++++|-+.|-+.++.+. -.+.|.+..
T Consensus 991 k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt---ynitwcqav 1035 (1636)
T KOG3616|consen 991 K--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT---YNITWCQAV 1035 (1636)
T ss_pred h--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc---ccchhhhcc
Confidence 2 23456777788888888888888888777776553 234455443
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=4.1e-09 Score=85.93 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRIKN---VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH 397 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (544)
+...+.-.|...|+...|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++.+... +-+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 44556677888888888888888777543 3477778888888888888888888888752 3356678888888888
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHH
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
.|++++|...|++.........-..+|..++.+..+.|+.+.|.+.|++.. .+..+.....+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 888888888888887753334445678888888888888888888888764 344466777777888888888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 476 GEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 476 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
++......+.+...+...+.+-.+.|+.+.|-++=.++.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888777777777777788888888888777655444
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=2.1e-09 Score=95.89 Aligned_cols=254 Identities=11% Similarity=-0.006 Sum_probs=138.2
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHH
Q 044352 224 YARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIG 303 (544)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 303 (544)
+.-.|++..++.-.+ .....-..+......+.+++...|+++.++. ++.... .|....+..+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654444 2221111122333445566666666554332 222222 44444444443333332333333
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044352 304 REIHALVCRMGLH-IDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMR 382 (544)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 382 (544)
..-++........ .+.........++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333332222212 22333333344566678888888877765 45566666777888888888888888888763 2
Q ss_pred CCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHH
Q 044352 383 ANEVTLISVLSACSH----GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMA 456 (544)
Q Consensus 383 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 456 (544)
+..+...+..++.. .+.+.+|..+|+++.+ .+++++.+.+.++.++...|++++|.+++.+.. .+.++.++
T Consensus 162 -eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 -EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp -CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33444444444332 3357888888888765 445667777777777778888888887777653 34456666
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHHcCCCCchh
Q 044352 457 GAFRNGCNIHGRR-DLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 457 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~ 489 (544)
.+++.+....|+. +.+.+++.++...+|.+|..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 6676666666666 56667777777777765543
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=1.9e-07 Score=80.83 Aligned_cols=198 Identities=12% Similarity=0.038 Sum_probs=138.1
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchh-HHHHHHHHHhc
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFM-LNWMVMASAFT 91 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~ 91 (544)
-...+...+...|++..|+..|-.+++..|+...++...+..|...|+...|+.-|.++. +||-.. -.--...+.++
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 345566777788888888888888888844444388888888888888888888888876 344322 22234567788
Q ss_pred CCHHHHHHHHHHHHhcccccC--HHH------------HHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 044352 92 GNFQEAIGYFSLMREFIYRCN--KFT------------FSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDM 157 (544)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~p~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (544)
|.+++|..-|+..++....-+ ... ....+..+...|+...|+.....+++.. +-+...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 889999888888877532111 011 2223445567788888888888888774 6677788888888
Q ss_pred HHhCCCHHHHHHHHhhc---cCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHh
Q 044352 158 YSKCGLLCSARRVFHGM---FERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQF 215 (544)
Q Consensus 158 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 215 (544)
|...|++..|+.-+... ...+...+.-+-..+...|+.+.++...++.++. .||..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 88888888887665554 3356666667777777888888888777777654 45543
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.6e-09 Score=102.33 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=134.9
Q ss_pred ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC----------CCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 044352 43 DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN----------PNVF-MLNWMVMASAFTGNFQEAIGYFSLMREF---- 107 (544)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 107 (544)
.|....+...++..|...|+++.|+.+++.... +... ..+.+...|...+++.+|+.+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 555444666688888888888888888776541 2222 2445667788888888888888887642
Q ss_pred -c--cccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-----C-CCCCh-hHHHHHHHHHHhCCCHHHHHHHHhhccC-
Q 044352 108 -I--YRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM-----G-FENDV-SVGNALIDMYSKCGLLCSARRVFHGMFE- 176 (544)
Q Consensus 108 -~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 176 (544)
| .+--..+++.|..+|.+.|++++|...++...+. + ..+.. ..++.+...+...+++++|..+++...+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 1112346777777888888888888887766543 1 11222 2345556666777777777776664421
Q ss_pred ------C-C---hhhHHHHHHHHhccCChhHHHHHHHHHHHcC----C--CC-CHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 177 ------R-D---VVSWTSMISGYCNVSKVDEAVVLFERMKLEG----L--EP-NQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 177 ------~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
+ + ..+++.|...|.+.|++++|.+++++..... - .+ ....++.+...|.+.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1 1 1245556666666666666666666554321 0 11 123345555555555555555555554
Q ss_pred hhhC----C--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044352 240 MTAE----G--FVPDLVTWNAMISGFAQSKRENEALKLFKGML 276 (544)
Q Consensus 240 ~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (544)
.... | .+....+|..|...|.+.|+++.|+++...+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3221 1 11123445555566666666666665555544
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=6.1e-11 Score=74.87 Aligned_cols=45 Identities=36% Similarity=0.696 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHH
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISG 258 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (544)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6.3e-11 Score=74.80 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC
Q 044352 76 PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG 125 (544)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 125 (544)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=1.9e-07 Score=88.76 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=37.7
Q ss_pred HHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccC
Q 044352 21 GKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKI 73 (544)
Q Consensus 21 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (544)
.+....|++..|...++....-|.... .|..+...-...|+.--|.++|..+
T Consensus 452 gaaid~~df~ra~afles~~~~~da~a-mw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLESLEMGPDAEA-MWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred ccccccCchHHHHHHHHhhccCccHHH-HHHHHHHHHHHhccchHHHHHHHHH
Confidence 345578899999887776544344444 8888888888888888888877654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=7.8e-08 Score=90.94 Aligned_cols=195 Identities=7% Similarity=-0.010 Sum_probs=120.5
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccc--hhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHH
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLN--IFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLN 82 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 82 (544)
+|..+.++..+...+...|+.+.+.+.+....+. +.+ ........+..+...|++++|...++++. |.+...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4556667777777777778888877777777666 322 22133334445567788888888877765 33444444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcccccCH-HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 044352 83 WMVMASAF----TGNFQEAIGYFSLMREFIYRCNK-FTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDM 157 (544)
Q Consensus 83 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (544)
. ...+.. .+....+.+.++... ...|+. .....+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 2 222222 344444444444311 122322 233444556677888888888888888775 5556667777777
Q ss_pred HHhCCCHHHHHHHHhhccCC-----Ch--hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 044352 158 YSKCGLLCSARRVFHGMFER-----DV--VSWTSMISGYCNVSKVDEAVVLFERMKL 207 (544)
Q Consensus 158 ~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (544)
+...|++++|...+++..+. +. ..|..+...+...|++++|..++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888888887776541 11 2344566777778888888888877653
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.6e-09 Score=98.59 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=170.8
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHH
Q 044352 294 GGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 370 (544)
+.+.|++.+|.-.|+...+.. +.+..+|..|.......++-..|+..+++..+ .|......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777888888888887776 44778888888888888888888888877664 46678888888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHH--------HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044352 371 ELFERMLEEGMRANEVTLIS--------VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 442 (544)
..++..+... |....... .-..+.....+....++|-.+....+..+|+++...|+-.|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999987742 11100000 0011122223445555565555543556889999999999999999999999
Q ss_pred HHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 443 LLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 443 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.|+.+. .+.|...|+.|+..+....+.++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|=.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999874 4556789999999999999999999999999999999999999999999999999999998877764
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=7.3e-07 Score=95.57 Aligned_cols=330 Identities=12% Similarity=-0.014 Sum_probs=210.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--C----CCC--HhHHHHHHHHH
Q 044352 188 GYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG--F----VPD--LVTWNAMISGF 259 (544)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~ 259 (544)
.+...|+++.+...+..+.......+..........+...|+++++..++......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655221111122222334455567899999999888765421 0 111 11222334556
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 044352 260 AQSKRENEALKLFKGMLVSGIKPNN----VTVTGVLQAGGLTGSIQIGREIHALVCRMGL---HI--DVFTGSALIDMYS 330 (544)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 330 (544)
...|++++|...+++....-...+. .....+...+...|+++.|...+........ .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763211121 2334455567789999999998888765311 11 1234455677788
Q ss_pred hcCCHHHHHHHHHhcCC-------c----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 044352 331 KCGSLKDARTLFEITRI-------K----NVASWNAMIGCYGKHGMVDSSIELFERMLEEG--MRA--NEVTLISVLSAC 395 (544)
Q Consensus 331 ~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 395 (544)
..|+++.|...+++... + ....+..+...+...|++++|...+++..... ..+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999988765442 1 12234455666777899999999998876531 112 233445566677
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCh----hHHHHHHHHHh
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKISKEHY-----ACVVDMLCRSGRMVEAYDLLRQVPMY--VTN----SMAGAFRNGCN 464 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~ 464 (544)
...|+++.|...+...............+ ...+..+...|+.+.|...+...... ... ..+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998885531111111111 11224455689999999998776421 111 11345666788
Q ss_pred hcCChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 465 IHGRRDLAVTMGEEFFEMGL------RKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
..|++++|...++++++... ....++..++.++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999987531 123467788999999999999999999998754
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=1.1e-08 Score=86.22 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=112.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777776444332221 11 012235667777777777766 346778889999999999999
Q ss_pred HHHHHHHHHhCC--CCCChhHHHHHHHHH-hhcCC--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044352 437 MVEAYDLLRQVP--MYVTNSMAGAFRNGC-NIHGR--RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 437 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
+++|...|+++. .+.+...+..++.++ ...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998874 445677778887764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC
Q 044352 512 IMKEKNVQ 519 (544)
Q Consensus 512 ~~~~~~~~ 519 (544)
++++....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99886543
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=7.7e-07 Score=84.17 Aligned_cols=193 Identities=11% Similarity=-0.041 Sum_probs=92.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcC
Q 044352 325 LIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RANE--VTLISVLSACSHG 398 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~ 398 (544)
+...+...|++++|...+++... .+...+..+..++...|++++|...+++...... .|+. ..+..+...+...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 33444455555555555554432 2233444555555555555555555555544311 1111 1233444455555
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHH-H--HHHHHHHhcCCHHHHHHH---HHhC----CCCCChhHHHHHHHHHhhcCC
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHY-A--CVVDMLCRSGRMVEAYDL---LRQV----PMYVTNSMAGAFRNGCNIHGR 468 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~g~ 468 (544)
|++++|..++++........+..... . .+...+...|..+.+.+. .... ..............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 56666655555543210101111100 1 112222233322222111 1110 000011111244456667788
Q ss_pred hHHHHHHHHHHHHcCC---------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 469 RDLAVTMGEEFFEMGL---------RKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++|...++.+....- .........+.++...|++++|.+.+...+...
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888877755321 123455667778889999999999998887643
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.5e-06 Score=82.45 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=155.6
Q ss_pred HhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------c-cccCHHHHHHHHHHhhCC
Q 044352 56 VYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREF--------I-YRCNKFTFSIVLKACVGL 126 (544)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~-~~p~~~~~~~ll~~~~~~ 126 (544)
.|..-|+.+.|.+-.+.+.. ...|..|.+.|.+..+.+-|.-.+-.|... . -.|+ .+=..+.......
T Consensus 737 fyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 45667888888877766654 456888888888887777665555444321 0 1122 2222333334577
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCC-ChhhHHHHHHHHhccCChhHHHHHHHHH
Q 044352 127 LDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFER-DVVSWTSMISGYCNVSKVDEAVVLFERM 205 (544)
Q Consensus 127 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (544)
|.+++|+.+|.+..+.. .|=..|...|.+++|.++.+.--+- =..+|......+...++.+.|++.|++.
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 88888888888877542 3445567788888888877654331 1246666777777788888888888764
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 044352 206 KLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNV 285 (544)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (544)
. .|--..+..|. .++.....+.+.+. |...|.-....+-..|+.|.|+.+|....+
T Consensus 885 ~----~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 885 G----VHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred C----ChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 2 11111111111 12223333333332 445555566666678888888888877653
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044352 286 TVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR 346 (544)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 346 (544)
|..+++..|-.|+.++|-++-++ .-|..+...+.+.|...|++.+|..+|-+..
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777778888888777654 2255666677888888888888888876544
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.09 E-value=1.2e-06 Score=86.44 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=70.1
Q ss_pred cchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhcc-------------------
Q 044352 13 VNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDK------------------- 72 (544)
Q Consensus 13 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------- 72 (544)
..+|..+...|...-|...|.+-|+.+.+. +.+.. +.......|++..+++.|....-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdae-aaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAE-AAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh-hHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 346666666666666777777777777777 44444 667777777777777766655322
Q ss_pred -----------------CC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHH--HHHhhCCCChH
Q 044352 73 -----------------IP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV--LKACVGLLDIK 130 (544)
Q Consensus 73 -----------------~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~~~~~ 130 (544)
.. |.|...|..++.+|.+.|++..|+++|.+... +.|+.. |... ...-+..|.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHH
Confidence 11 33445555666666666666666666665554 233322 1111 11223455666
Q ss_pred HHHHHHHHHHH
Q 044352 131 KGKQVHAVATQ 141 (544)
Q Consensus 131 ~a~~~~~~~~~ 141 (544)
++...+..+..
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=4.3e-08 Score=87.59 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=121.9
Q ss_pred HhhccchhhhhhHHhHHHhhc-c-cchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044352 22 KCMKSKALRQGKQVHALLCTN-D-LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIG 99 (544)
Q Consensus 22 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 99 (544)
-+.-.|++..++.-.+ .... + .... ....+.+++...|+++.++.-...-.+|.......+...+...++-+.++.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e-~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLE-RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHH-HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHH-HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 3445677777776555 2222 2 2233 556677777778887777666655556666666555555544445555555
Q ss_pred HHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCC
Q 044352 100 YFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERD 178 (544)
Q Consensus 100 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 178 (544)
-++........+ +..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.+.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 555544332221 2222222223445566666666665431 234444555666666666666666666665422
Q ss_pred h-hhHHHH----HHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHH
Q 044352 179 V-VSWTSM----ISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWN 253 (544)
Q Consensus 179 ~-~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (544)
. .+...+ +..+.-...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +.++.+..
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 1 111112 22222223466666666665433 34555555555556666666666666666655443 33444444
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHH
Q 044352 254 AMISGFAQSKRE-NEALKLFKGMLV 277 (544)
Q Consensus 254 ~l~~~~~~~~~~-~~a~~~~~~~~~ 277 (544)
.++.+....|+. +.+.+++.++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 455555555555 444455555543
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=3.2e-08 Score=87.30 Aligned_cols=182 Identities=12% Similarity=-0.008 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---H
Q 044352 317 IDVFTGSALIDMYSKCGSLKDARTLFEITRI--K-NV---ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEV---T 387 (544)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~ 387 (544)
.....+...+..+...|+++.|...|+.+.. | ++ ..+..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 3456677777778888888888888876653 2 22 356777778888888888888888887752 21222 3
Q ss_pred HHHHHHHHhcC--------CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 044352 388 LISVLSACSHG--------GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAF 459 (544)
Q Consensus 388 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 459 (544)
+..+..++... |+++.|.+.++++... .+.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44555555543 6777888888887764 2222222222211100 00000 0112355
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+..+...|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999999977654 68999999999999999999999988764
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.1e-05 Score=76.90 Aligned_cols=350 Identities=15% Similarity=0.142 Sum_probs=204.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC-CCCch-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHH
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP-NPNVF-----MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKA 122 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 122 (544)
.......++...+-..+-+++++++. .+++. .-|.++-.. -.-+..+..+..+++-..+. |+ +...
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa-~~------ia~i 1057 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDA-PD------IAEI 1057 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCc-hh------HHHH
Confidence 33445556666666666666666654 22221 222222222 22233444444444433211 11 1223
Q ss_pred hhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHH
Q 044352 123 CVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLF 202 (544)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (544)
+...+-+++|..+|... ..+..+.+.|+. .-+..++|.+..++..+ +..|..+..+-.+.|...+|.+-|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHH
Confidence 34445556666666543 233444444433 24556666666665544 356888888888888888888776
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 044352 203 ERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKP 282 (544)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (544)
-+ .-|+..|.-+++...+.|.+++-.+++.-..+..-.|... +.|+.+|++.++..+..+++. -|
T Consensus 1128 ik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1128 IK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred Hh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 54 3466778888999999999999888887777664455444 467888888888877665542 57
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--------------
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK-------------- 348 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------- 348 (544)
|......+..-|...+.++.|.-+|..+ .-|..+...+...|+++.|...-++....
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 7777777777888888888887777643 34556666666667776665554433311
Q ss_pred --------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044352 349 --------------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKER 414 (544)
Q Consensus 349 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 414 (544)
...-...++.-|..+|-+++.+.+++..+... +.....|+-+.-.|.+- ++++..+.++-.-.+
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR 1341 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 11234556777777888888777777654321 22333455555555543 455555555544443
Q ss_pred hCCCC------chhHHHHHHHHHHhcCCHHHHHH
Q 044352 415 YGVKI------SKEHYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 415 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 442 (544)
.+++. ....|..++-.|.+-..++.|.-
T Consensus 1342 vNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1342 VNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 23221 23456666667766666665543
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=9.9e-09 Score=81.78 Aligned_cols=93 Identities=9% Similarity=-0.119 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
+...+..+...|++++|...|+.+. .+.+...+..++.++...|++++|+..|+++++++|.++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344455555555555555555542 23344455555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHhc
Q 044352 502 EWHEAENLRKIMKEK 516 (544)
Q Consensus 502 ~~~~A~~~~~~~~~~ 516 (544)
++++|+..|++.++.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=4e-06 Score=89.98 Aligned_cols=257 Identities=10% Similarity=0.003 Sum_probs=110.4
Q ss_pred HHhCCCHHHHHHHHhhccC----CCh----hhHHHHHHHHhccCChhHHHHHHHHHHHcCC---CC--CHhhHHHHHHHH
Q 044352 158 YSKCGLLCSARRVFHGMFE----RDV----VSWTSMISGYCNVSKVDEAVVLFERMKLEGL---EP--NQFTYNAIIASY 224 (544)
Q Consensus 158 ~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 224 (544)
+...|++++|...++.... .+. ...+.+...+...|++++|...+.+...... .+ ...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3445555555555544322 111 1223333444455555555555555432100 11 112233344445
Q ss_pred HhcCChHHHHHHHHHhhh----CCCC--C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHH
Q 044352 225 ARRGDSNAAFAFFSRMTA----EGFV--P-DLVTWNAMISGFAQSKRENEALKLFKGMLVSG--IKPN--NVTVTGVLQA 293 (544)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 293 (544)
...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 555555555555554332 1111 1 11223334444455566666555555543310 0111 1222233344
Q ss_pred hhccCchHHHHHHHHHHHHcCC--CCCHH--H--HHHHHHHHHhcCCHHHHHHHHHhcCCcc---H----HHHHHHHHHH
Q 044352 294 GGLTGSIQIGREIHALVCRMGL--HIDVF--T--GSALIDMYSKCGSLKDARTLFEITRIKN---V----ASWNAMIGCY 360 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~l~~~~ 360 (544)
....|+.+.|...+........ ..... . ....+..+...|+.+.|..++.....+. . ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4555555555555555433210 00000 0 0111233334566666666654443211 0 0123444555
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044352 361 GKHGMVDSSIELFERMLEE----GMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKER 414 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 414 (544)
...|++++|...+++.... |..+ ...+...+..++...|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666666655442 1111 1124444555566666666666666666553
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=2.5e-08 Score=79.50 Aligned_cols=124 Identities=9% Similarity=-0.041 Sum_probs=102.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 044352 370 IELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP- 448 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 448 (544)
..++++.++. .|+. +......+...|++++|...|+.+.. .-+.+...+..++.++.+.|++++|...|+++.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 4443 55567788899999999999999876 446678888999999999999999999999874
Q ss_pred -CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 449 -MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 449 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
.+.+...+..++.++...|++++|+..|++++++.|+++..+...+.++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 556788999999999999999999999999999999999999888877654
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=5.3e-08 Score=90.17 Aligned_cols=248 Identities=11% Similarity=-0.002 Sum_probs=170.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044352 258 GFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKD 337 (544)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (544)
-+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456666777776776666553 3345566666666666666667777777766665 3356666667777777777777
Q ss_pred HHHHHHhcCCccHH-HHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044352 338 ARTLFEITRIKNVA-SWNAMI---------GCYGKHGMVDSSIELFERM-LEEGMRANEVTLISVLSACSHGGLVEKGLE 406 (544)
Q Consensus 338 A~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 406 (544)
|...+.......+. .|.... ..+..........++|-++ ...+..+|+.+...|.-.|--.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 77776654321100 000000 0111111223344444444 444445788888999989999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 407 IFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
.|+.+.. --|.|...|+.|+..++...+..+|+..|.++. ..|. +.++..++-.|+..|.+++|.++|-.++.+.+
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999987 345678899999999999999999999999975 5555 56889999999999999999999999998764
Q ss_pred C-----C-----chhHHHHHHHHHhcCChHHHHHH
Q 044352 485 R-----K-----PDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 485 ~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
. . ..+|..|=.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 3 1 14677777777777877755544
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=1.3e-07 Score=96.14 Aligned_cols=201 Identities=14% Similarity=0.155 Sum_probs=163.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044352 316 HIDVFTGSALIDMYSKCGSLKDARTLFEITRIK--------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVT 387 (544)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 387 (544)
+.+...|...|......++.++|+++++++... -...|.+++......|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667888888888999999999998877641 2347888888888888888899999999884 334557
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHH
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVTNSMAGAFRNGC 463 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~ 463 (544)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+..+-+.|..++.++. .........-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888899999999999999999999766 567788899999999999999999988763 222344445555566
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 044352 464 NIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQK 520 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 520 (544)
.+.|+.+.++.+|+..+.-.|.-.+.|..+++.-.+.|+.+.++.+|++++..++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 788999999999999999999999999999999999999999999999999887654
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=5.2e-05 Score=70.27 Aligned_cols=433 Identities=13% Similarity=0.117 Sum_probs=249.4
Q ss_pred ccccCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCch
Q 044352 3 RLIFPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVF 79 (544)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 79 (544)
|..+.-+|-+-.+|..+++-+-.+ -+++++..+++++.. |..+. +|...+....+..+++....+|.+.. .-+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r-~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR-AWKLYIERELASKDFESVEKLFSRCLVKVLNLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh
Confidence 445667888888999999876544 899999999999999 66667 99999999999999999999999876 45677
Q ss_pred hHHHHHHHHHh-cCCHH----HHHHHHHHHHh-cccccCHH-H---HHHHHHHhh------CCCChHHHHHHHHHHHHcC
Q 044352 80 MLNWMVMASAF-TGNFQ----EAIGYFSLMRE-FIYRCNKF-T---FSIVLKACV------GLLDIKKGKQVHAVATQMG 143 (544)
Q Consensus 80 ~~~~l~~~~~~-~~~~~----~A~~~~~~~~~-~~~~p~~~-~---~~~ll~~~~------~~~~~~~a~~~~~~~~~~~ 143 (544)
.|...++---+ .|+.. ...+.|+-..+ .|+.+-.. . |...++..- ...+++...+++.+++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77777764433 23322 23344444333 23333221 2 233333322 2334556667777776543
Q ss_pred CCCChhHHHHH------HHHH-------HhCCCHHHHHHHHhhccC------CC---------------hhhHHHHHHHH
Q 044352 144 FENDVSVGNAL------IDMY-------SKCGLLCSARRVFHGMFE------RD---------------VVSWTSMISGY 189 (544)
Q Consensus 144 ~~~~~~~~~~l------~~~~-------~~~~~~~~A~~~~~~~~~------~~---------------~~~~~~l~~~~ 189 (544)
+..=...|+.. ++.. -+...+-.|.++++++.. .+ ...|-.+|..-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 22112222221 1111 122344555555555411 00 11233333221
Q ss_pred hccC------Ch--hHHHHHHHHH-HHcCCCCCHhhH-----HHHHHHHHhcCC-------hHHHHHHHHHhhhCCCCCC
Q 044352 190 CNVS------KV--DEAVVLFERM-KLEGLEPNQFTY-----NAIIASYARRGD-------SNAAFAFFSRMTAEGFVPD 248 (544)
Q Consensus 190 ~~~~------~~--~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 248 (544)
-.++ .. ....-.+++. .-.+..|+.... ....+.+...|+ .+++..+++.....-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 00 0111112221 111223322110 111122333343 3455555555443322334
Q ss_pred HhHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCC-CHHHHHH
Q 044352 249 LVTWNAMISGFA---QSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHI-DVFTGSA 324 (544)
Q Consensus 249 ~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 324 (544)
..+|..+...-- +-...+.....+++++..-..--..+|...+....+..-...|..+|.++.+.+..+ ++.+..+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 444444443211 122366677777777654323334567777888888888899999999998877665 6777777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCC
Q 044352 325 LIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN--EVTLISVLSACSHGG 399 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 399 (544)
++..+| .++..-|.++|+-..+ .++.--...+.-+...++-..+..+|++.+..++.|+ ...|..++..-..-|
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 777666 4788889999987664 2444456677777888888899999999988866654 358888888888889
Q ss_pred chHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHH
Q 044352 400 LVEKGLEIFRSMKERYG--VKISKEHYACVVDMLCRSGRMV 438 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 438 (544)
++..+.++-++....+. ..+....-..++..|.-.+.+.
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 99888888887766433 2222233344455555444433
No 113
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=1.4e-06 Score=78.97 Aligned_cols=213 Identities=12% Similarity=-0.027 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCCh--HHHHH
Q 044352 298 GSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCG-SLKDARTLFEITRI---KNVASWNAMIGCYGKHGMV--DSSIE 371 (544)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~A~~ 371 (544)
+..++|......+++.. +.+..+|+....++...| ++++++..++.+.. .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34445555555555443 223344444444455555 45677777766553 3444566555455555543 56788
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCH----HHHHHHH
Q 044352 372 LFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRS---GRM----VEAYDLL 444 (544)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~ 444 (544)
+++++++.. +-|..+|.....++...|+++++++.++++.+. -+.+...|+.....+.+. |.. +++.++.
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888887753 447778888888888888888888888888874 344556666666555444 222 4566666
Q ss_pred HhCC--CCCChhHHHHHHHHHhhc----CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-----------------
Q 044352 445 RQVP--MYVTNSMAGAFRNGCNIH----GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG----------------- 501 (544)
Q Consensus 445 ~~~~--~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 501 (544)
.++. .+.+..+|+.+...+... ++..+|...+.++++.+|+++.++..|+.+|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 4542 455677888887777763 45577999999999999999999999999998743
Q ss_pred -ChHHHHHHHHHHH
Q 044352 502 -EWHEAENLRKIMK 514 (544)
Q Consensus 502 -~~~~A~~~~~~~~ 514 (544)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 3467888888873
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=2.4e-07 Score=92.63 Aligned_cols=133 Identities=8% Similarity=-0.053 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044352 349 NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACV 427 (544)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 427 (544)
++..+..|.....+.|++++|..+++...+. .| +......++.++.+.+++++|...+++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3556666666666777777777777777664 34 344556666666677777777777776665 334445556666
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
..++.+.|++++|.++|+++. .+.+..++..++.++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 666667777777777776654 2223556666666666777777777777777666543
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=0.00011 Score=72.48 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=150.9
Q ss_pred hccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHH
Q 044352 24 MKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGY 100 (544)
Q Consensus 24 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 100 (544)
...+++..|.+..+++++..|+...+...-+-.+.+.|+.++|..+++... ..|..+...+-.+|...++.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 366899999999999999955544144444455668999999999998765 45778889999999999999999999
Q ss_pred HHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-C---------HHHHHHH
Q 044352 101 FSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCG-L---------LCSARRV 170 (544)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~A~~~ 170 (544)
|++..+ ..|+......+..+|++.+++.+-.++--++.+. ++.++..+=+++......- . ..-|.+.
T Consensus 100 Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999987 4677778888888999988887755554444443 3455555445555544321 1 2234555
Q ss_pred HhhccCCC-----hhhHHHHHHHHhccCChhHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 171 FHGMFERD-----VVSWTSMISGYCNVSKVDEAVVLFE-RMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 171 ~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
++.+.+.+ ..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55554433 1122233344556788999999994 44444333344444566777788889998888888888775
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=4.8e-07 Score=86.28 Aligned_cols=212 Identities=8% Similarity=-0.073 Sum_probs=148.8
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--ccHHHHHHHHHHHHhcCC
Q 044352 288 TGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--KNVASWNAMIGCYGKHGM 365 (544)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 365 (544)
..+...+...|-...|..+++++ ..+..++.+|...|+..+|..+..+..+ +++..|..+++......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34445555666666666666643 3455566677777777777666654443 455566666665555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 366 VDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLR 445 (544)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 445 (544)
+++|.++.+..... .-..+.....+.++++++.+.|+...+. .+....+|..++.+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 66666665543321 1111222223467788888888777663 34456688888888889999999999888
Q ss_pred hCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 446 QVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 446 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
... .+.+..+|+++..+|.+.|+-.+|...+.++++-+-.+...|.+..-+..+.|.+++|++.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 764 344567899999999999999999999999999888888999999999999999999999999987643
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=5.2e-07 Score=86.09 Aligned_cols=188 Identities=16% Similarity=0.069 Sum_probs=160.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 315 LHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
.+|--..-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+|++..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445556678888999999999999999765 677888999999999999999999888 38999999999998
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
.....-+++|.++.+....+ .-..+.....+.+++.++.+.|+... .+....+|..++.+..+.++.+.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888889999988776542 22233334456899999999998753 455678999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.+.|.....++|++...|+++..+|.+.|+..+|...+++.++-+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999877
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.85 E-value=4.1e-08 Score=76.48 Aligned_cols=98 Identities=9% Similarity=-0.073 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+......+...+...|++++|..+|+-+. .+.+...|..|+.++...|++++|+..|..+..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34556677778889999999999999874 5567789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|+.+.|++.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=8.4e-07 Score=74.40 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044352 354 NAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR 433 (544)
Q Consensus 354 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (544)
..+...+...|+-+....+....... .+.+.......+....+.|++..|...+.+... .-++|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666677777777666665442 233444555567777777788888877777765 567777777777777778
Q ss_pred cCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044352 434 SGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
.|++++|..-|.+.. ...++...++++-.+.-.|+.+.|..++..+....+.++.+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888887777776653 344566677777777778888888888888877777777888888888888888888877654
Q ss_pred H
Q 044352 512 I 512 (544)
Q Consensus 512 ~ 512 (544)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=1.8e-07 Score=82.47 Aligned_cols=181 Identities=13% Similarity=0.033 Sum_probs=125.0
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccch---hhHHHHHHHHhhcCCChHHHHHHhccCC---CCCch
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNI---FSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVF 79 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 79 (544)
|.++.+...+...+..+...|+++.|...++++++. |.++ . ++..++.++...|++++|+..++.+. |.++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQ-AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 566677788888888888999999999999998888 4433 4 67788888888999999999998876 22332
Q ss_pred ---hHHHHHHHHHhc--------CCHHHHHHHHHHHHhcccccCHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCC
Q 044352 80 ---MLNWMVMASAFT--------GNFQEAIGYFSLMREFIYRCNKF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFEND 147 (544)
Q Consensus 80 ---~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 147 (544)
++..+..++... |++++|++.|+++... .|+.. ....+.... . +....
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---------~~~~~-------- 165 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---------LRNRL-------- 165 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---------HHHHH--------
Confidence 355555555544 6788888888888774 34332 221111110 0 00000
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhccC--C----ChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044352 148 VSVGNALIDMYSKCGLLCSARRVFHGMFE--R----DVVSWTSMISGYCNVSKVDEAVVLFERMKLE 208 (544)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (544)
......+...|.+.|++.+|...++...+ | ....+..+..++...|++++|..+++.+...
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01112456678889999999999888854 2 2357888889999999999999998888754
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=5.7e-07 Score=74.68 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRI--K-NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH 397 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (544)
+|..++-+....|+.+.|..+++.+.. | +..+-..-...+-..|++++|+++++.+++.+ +.|..++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 455666777788888888888877653 2 22222222233456788999999999988874 4466677666666667
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcC---ChHHH
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHG---RRDLA 472 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A 472 (544)
.|+--+|++-+....+ .+..|.+.|..+...|...|++++|.-.++++. .|.++..+..++..+.-.| +.+.|
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777788888888877 567888899999999999999999998888874 3445556667776655433 67888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
.++|.++++++|.+...+..+-.++.
T Consensus 211 rkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 89999999998876666666544443
No 122
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=4.8e-07 Score=81.97 Aligned_cols=187 Identities=14% Similarity=0.024 Sum_probs=143.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCc---cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch--
Q 044352 328 MYSKCGSLKDARTLFEITRIK---NVASWNAMIGCYGKHG-MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLV-- 401 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 401 (544)
.+...++.++|+.+...+... +..+|+....++...| ++++++..++++.... +.+..+|......+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344567788888888877753 3446666666667777 6799999999999863 44666777666666666653
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc---CC----hHHH
Q 044352 402 EKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH---GR----RDLA 472 (544)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~----~~~A 472 (544)
+++..+++++.+ ..+-+..+|.....++...|+++++++.++++. .+.+..+|+....++.+. |. .+++
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 678889988887 345678889999999999999999999999985 556778888877766554 22 3578
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAA----DGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (544)
+.+..++++.+|+|..+|..++.++.. .++..+|.+...++.+.+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 888999999999999999999999988 355677988888876644
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=7.9e-07 Score=75.03 Aligned_cols=155 Identities=7% Similarity=0.079 Sum_probs=119.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKG 404 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (544)
-+..|...|+++.+....+....+. ..+...++.+++...+++.+... +.+...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456778888887755543332221 01223567788888888888763 66888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHH-HhcCC--HHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 044352 405 LEIFRSMKERYGVKISKEHYACVVDML-CRSGR--MVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEF 479 (544)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (544)
...|++..+. .+.+...+..+..++ ...|+ .++|.++++++. .+.+..++..++..+...|++++|+..|+++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999873 455778888888874 67777 599999999874 4556788899999999999999999999999
Q ss_pred HHcCCCCchhH
Q 044352 480 FEMGLRKPDGF 490 (544)
Q Consensus 480 ~~~~p~~~~~~ 490 (544)
++++|++..-.
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998766544
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=3.7e-07 Score=76.45 Aligned_cols=172 Identities=16% Similarity=0.079 Sum_probs=126.6
Q ss_pred hhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044352 31 QGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREF 107 (544)
Q Consensus 31 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (544)
.+..+.......|.+.. + ..+...+...|+-+.+..+..... +.+....+..+....+.|++..|+..+++....
T Consensus 52 a~~al~~~~~~~p~d~~-i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLS-I-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHhcCcchHH-H-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 34444444444455666 6 777777778888888887777754 445555666788888888888888888888764
Q ss_pred ccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHH
Q 044352 108 IYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTS 184 (544)
Q Consensus 108 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 184 (544)
-++|...|+.+.-+|.+.|+++.|..-|.+..+.- +.++...+.+.-.+.-.|+.+.|..++..... .|...-..
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 34577788888888888888888888888888774 55667777777778888888888888877632 46667777
Q ss_pred HHHHHhccCChhHHHHHHHHHH
Q 044352 185 MISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
+.......|++++|.++...-.
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 7777788888888888776543
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=2.7e-06 Score=86.04 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=161.6
Q ss_pred CCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHH
Q 044352 8 INNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVM 86 (544)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 86 (544)
-+|....++..|+..+...|++++|.++++..++. |.... .+..++..+.+.++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-ALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-hHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 35667788999999999999999999999988888 44455 777777788888886666655 3344
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCS 166 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (544)
......++.-...+...|.. ..-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 44444455444444555555 23355578888889999999999999999999987 77888999999999988 9999
Q ss_pred HHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CC
Q 044352 167 ARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE-GF 245 (544)
Q Consensus 167 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 245 (544)
|..++.+.. ..+...+++.++.++|.++.... |+...+ -..+.+.+... |.
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhcc
Confidence 998877653 33666678888888888887652 322211 11112222111 11
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 044352 246 VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGG 295 (544)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (544)
..-..++-.+-..|-..+++++++.+++.+++.. +-|......++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2233444455566666677777777777776553 234444555555443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=1.5e-07 Score=74.78 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
.....++..+...|++++|.+.++.+. .+.+...+..++..+...|++++|..+++++++.+|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 344445555556666666666665542 233455555666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHhcC
Q 044352 500 DGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~ 517 (544)
.|++++|...+++.++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 666666666666666543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4e-06 Score=69.77 Aligned_cols=182 Identities=13% Similarity=0.083 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044352 262 SKRENEALKLFKGMLV---SG-IKPNNVT-VTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLK 336 (544)
Q Consensus 262 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (544)
..+.++.++++.+++. .| ..++..+ +..++-+....++.+.|...++.+...- +.+..+-..-...+...|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4455666666666553 22 3334332 3344455555566666666666655543 333333333333444556666
Q ss_pred HHHHHHHhcCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 337 DARTLFEITRIK---NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 337 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
+|+++++.+... |..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666665543 2334444444444555555666666665554 455666666666666666666666666666653
Q ss_pred HhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhC
Q 044352 414 RYGVKISKEHYACVVDMLCRSG---RMVEAYDLLRQV 447 (544)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 447 (544)
..|.++..+..+.+.+.-.| +..-|.++|.+.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22334444455555544333 344455555554
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.3e-05 Score=67.32 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchH
Q 044352 327 DMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH----GGLVE 402 (544)
Q Consensus 327 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 402 (544)
..|+..|++++|.+...... +......=+..+.+..+.+-|...+++|.+- .+..|++.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 34444555555555544422 1122222222333444445555555555441 233344444443332 22344
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 403 KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
.|.-+|+++.+ ..+|+..+.+....+....|++++|..+++.+
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 44555555443 23444444444444444444444444444443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.2e-06 Score=68.55 Aligned_cols=243 Identities=11% Similarity=0.062 Sum_probs=147.6
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHH
Q 044352 190 CNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEAL 269 (544)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (544)
.-.|++..++..-...... +-+...-..+.++|...|.+..... ++.... .|.......+......-++.+.-+
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3345555555544443322 1223333334455666665543322 222211 344444444444444444433333
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc
Q 044352 270 -KLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK 348 (544)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 348 (544)
++.+.+.......+......-...|+..+++++|.+...... +......-+.++.+..+.+.|...++.|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444444334444444445556778888888887776521 3444445556677888888898888888874
Q ss_pred -cHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhH
Q 044352 349 -NVASWNAMIGCYGK----HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEH 423 (544)
Q Consensus 349 -~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (544)
+..+.+.|..++.+ .+.+..|.-+|++|.++ .+|++.+.+..+.++...|++++|..+++....+ ...++.+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpet 243 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPET 243 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHH
Confidence 34466666666654 45688899999999886 6899999999999999999999999999998874 4455667
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHhC
Q 044352 424 YACVVDMLCRSGRMVEAY-DLLRQV 447 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~-~~~~~~ 447 (544)
...++-+-...|...++. +.+.++
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777776666666554443 344444
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=6.2e-06 Score=84.43 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc-c-HHHHH
Q 044352 281 KPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM-GLHI---DVFTGSALIDMYSKCGSLKDARTLFEITRIK-N-VASWN 354 (544)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 354 (544)
+.....|...|.-....++.+.|+++.+++... ++.- -..+|.++++.-...|.-+...++|+++.+- + ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334556777777777777888888777776653 1111 2346667777777778888888999988863 3 34788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044352 355 AMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRS 434 (544)
Q Consensus 355 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (544)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+...-..........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999887 556778899999999999999999999999887411112455566677777899
Q ss_pred CCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhc-CChHHHH
Q 044352 435 GRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG--LRKPDGFVMLSNICAAD-GEWHEAE 507 (544)
Q Consensus 435 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~~A~ 507 (544)
|+.+.+..+|+... .+...+.|+.++..-.++|+.+.++.+|++++.+. |.....+...=--|.+. |+-..+.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999998874 44467899999999999999999999999999877 44443333332233333 5444333
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.2e-05 Score=73.58 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=75.1
Q ss_pred HHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCChHH
Q 044352 394 ACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDL 471 (544)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~ 471 (544)
.+...|+++.|+..++.+.. ..+.|+..+......+.+.|+.++|.+.++++. ..|+ ...+..++.++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34455677777777777665 344455555556666777777777777776653 3333 5556666667777777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 472 AVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 472 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
|+.++++....+|++|..|..|+.+|...|+..+|...+.+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777777777777777777777777766666555554444333
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=6e-06 Score=83.60 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=118.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDL-VTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQ 292 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (544)
...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++.-+ .+ +.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 344455555555556666666665554443 2322 2233333344444443333332 11 12
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHH
Q 044352 293 AGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 369 (544)
......++.....+...+.+.+ .+..++..++.+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222223333333333333321 2333555555666666666666666655553 3445555565555555 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 044352 370 IELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPM 449 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (544)
.+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....-. .
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~------------~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE------------F 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc------------c
Confidence 6665555442 4444556666666666654 233333333333322221110 1
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
..-..++..+-..|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1122334444456667777888888888888888888888777777776
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1e-05 Score=74.15 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=113.7
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044352 348 KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACV 427 (544)
Q Consensus 348 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 427 (544)
.....+......+...|.+++|+..++.++.. .+-|+.........+...++.++|.+.++++... .+........+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 34445555555677788999999999998876 3556667777778888999999999999998863 23336667778
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHH
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHE 505 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 505 (544)
..+|.+.|++++|+.+++... .+.++..|..++.+|...|+..++...+. ..|.-.|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHH
Confidence 889999999999999998864 56678889999999999998777766544 45566677777
Q ss_pred HHHHHHHHHhcC
Q 044352 506 AENLRKIMKEKN 517 (544)
Q Consensus 506 A~~~~~~~~~~~ 517 (544)
|+..+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.3e-06 Score=69.45 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 044352 372 LFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-- 448 (544)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 448 (544)
.+++++.. .| +......+...+...|++++|.+.++.+... .+.+...+..++.++...|++++|..++++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 44 4455667777888999999999999998773 45677888899999999999999999998863
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHH
Q 044352 449 MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
.+.+...+..++..+...|++++|...++++++.+|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4556778888899999999999999999999999998766443
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3.2e-05 Score=77.67 Aligned_cols=127 Identities=10% Similarity=0.098 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI--K-NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
+...+..|..+..+.|.+++|..+++...+ | +......++.++.+.+++++|+..+++..... +-+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 344444455555555555555555544442 2 22344444444555555555555555554431 2233344444444
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
+.+.|++++|..+|+++.. ..+.+...+..+..++...|+.++|...|+++
T Consensus 164 l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 164 WDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555543 22233444444555555555555555555443
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.6e-07 Score=52.92 Aligned_cols=32 Identities=44% Similarity=0.860 Sum_probs=15.2
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044352 244 GFVPDLVTWNAMISGFAQSKRENEALKLFKGM 275 (544)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (544)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=4.2e-06 Score=67.10 Aligned_cols=115 Identities=15% Similarity=0.047 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHhhcCChHH
Q 044352 398 GGLVEKGLEIFRSMKERYGVK-ISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTN----SMAGAFRNGCNIHGRRDL 471 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~ 471 (544)
.++...+...++.+.+.++-. ........+...+...|++++|...|+.+. ..|++ .....++..+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 556666666666665531111 012233334455666666666666666653 12222 234455666677777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 472 AVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 472 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
|+..++.. .-.+..+..+..+|.+|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223444566677777777777777777777654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=2.6e-06 Score=78.84 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHh
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCN 464 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 464 (544)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.. .+.+...+..-+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455566666677888888888888764 233 44557777777788888888887764 3345666666677788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 465 IHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
..++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.8e-07 Score=52.76 Aligned_cols=33 Identities=39% Similarity=0.814 Sum_probs=27.9
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 044352 208 EGLEPNQFTYNAIIASYARRGDSNAAFAFFSRM 240 (544)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (544)
.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 377888888888888888888888888888876
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.50 E-value=3.8e-07 Score=62.43 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhcC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG-EWHEAENLRKIMKEKN 517 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 517 (544)
+...|..++..+...|++++|+..|+++++++|+++.++..++.++...| ++++|++.+++.++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999999999 7999999999988753
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0014 Score=61.28 Aligned_cols=448 Identities=12% Similarity=0.073 Sum_probs=237.7
Q ss_pred HHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 044352 37 ALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCN 112 (544)
Q Consensus 37 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 112 (544)
++-++. |-|.. +|..|++-+... .++++++.++++. +..+..|...|..-.+.++++....+|.+.+..-. +
T Consensus 10 ~~rie~nP~di~-sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--n 85 (656)
T KOG1914|consen 10 RERIEENPYDID-SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--N 85 (656)
T ss_pred HHHHhcCCccHH-HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--h
Confidence 334444 77788 999999877665 8999999998876 56677899999999999999999999999886433 4
Q ss_pred HHHHHHHHHHhhC-CCChH----HHHHHHHHHH-HcCCCC-ChhHHHHHHHHH---------HhCCCHHHHHHHHhhccC
Q 044352 113 KFTFSIVLKACVG-LLDIK----KGKQVHAVAT-QMGFEN-DVSVGNALIDMY---------SKCGLLCSARRVFHGMFE 176 (544)
Q Consensus 113 ~~~~~~ll~~~~~-~~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~~~~~~A~~~~~~~~~ 176 (544)
...|..-+..-.+ .++.. ...+.|+-.. +.|+.+ +..+|+..+..+ ..+.+++...++++++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5555554443322 22222 2233344333 334333 223455544432 223345555666666543
Q ss_pred C---Ch-hhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCC--
Q 044352 177 R---DV-VSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE--GFVPD-- 248 (544)
Q Consensus 177 ~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-- 248 (544)
. +. ..|+-.. .... ..|..|-..++ --+...+..|.++++++... |+..+
T Consensus 166 tPm~nlEkLW~DY~-----------------~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYE-----------------AFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred CccccHHHHHHHHH-----------------HHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 2 11 1121111 0000 00000000000 00112233333333333211 11100
Q ss_pred -------------HhHHHHHHHHHHcCC------C--HHHHHHHHHHHH-HcCCCCCHHHHH-----HHHHHhhccCc--
Q 044352 249 -------------LVTWNAMISGFAQSK------R--ENEALKLFKGML-VSGIKPNNVTVT-----GVLQAGGLTGS-- 299 (544)
Q Consensus 249 -------------~~~~~~l~~~~~~~~------~--~~~a~~~~~~~~-~~~~~~~~~~~~-----~l~~~~~~~~~-- 299 (544)
...|-.+|.---..+ . .....-.+++.+ --+..|+..-.. ..-..+...|+
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 011222221110000 0 001111222211 112222221100 00112223333
Q ss_pred -----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhcCC----ccHHHHHHHHHHHHhcCChH
Q 044352 300 -----IQIGREIHALVCRMGLHIDVFTGSALIDMYSKCG---SLKDARTLFEITRI----KNVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 300 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~ 367 (544)
.+++..+++...+.-...+..+|..+...--..- +.+....+++++.. .-..+|..++..-.+..-..
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHH
Confidence 3455555655554433334444444432221111 24444455554442 22336777787777888899
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 368 SSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
.|..+|.+..+.+..+ ...+..+++..+|. ++...|.++|+.=.++ +..++......+.-+...|+-..|..+|++
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 9999999999987666 55666777776654 6889999999987775 344555667778888899999999999998
Q ss_pred CCC---CC--ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 447 VPM---YV--TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP----DGFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 447 ~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
+.. .+ ....|..++.--...|+...+.++-++....-|.+. ..-.....-|--.+.+..-..-++.+
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 742 22 346899998888889999999999888877666221 12333444555555555444444433
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=8e-07 Score=59.90 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55678899999999999999999999999999999999999999999999999998754
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=4.7e-06 Score=64.49 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC---chhHHHHH
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP-MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK---PDGFVMLS 494 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 494 (544)
++..++..+.+.|++++|.+.|+.+. ..|+ ...+..++.++...|++++|...++.++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44455555666666666666666553 1121 2345556666777777777777777777766654 34566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 044352 495 NICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++.+.|++++|...++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776654
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.41 E-value=2.8e-06 Score=62.77 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
.+..++..+...|++++|..+++++. .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35567777888889999998888763 2334467778888888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 044352 501 GEWHEAENLRKIMKEKN 517 (544)
Q Consensus 501 g~~~~A~~~~~~~~~~~ 517 (544)
|++++|...+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=3.4e-05 Score=61.86 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc--hhHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN---EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS--KEHYAC 426 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 426 (544)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...+. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344555554 4788888888888888862 333 234445667788899999999999999875 32222 224455
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVPM-YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (544)
+...+...|++++|+..++.... ...+..+...+.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77888899999999999988652 3345566777788999999999999998864
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=1.6e-05 Score=73.64 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHG 398 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (544)
-.....++..+...++++.|..+|+++.+.++.....++..+...++..+|.+++++.+.. .+-+...+......|...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 3445566777777899999999999999888777788889998899999999999999975 344677777778889999
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
++++.|+.+.+++.. -.|.+..+|..|+.+|...|+++.|+-.++.+|
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999987 345567799999999999999999999999987
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=4.3e-06 Score=71.71 Aligned_cols=108 Identities=9% Similarity=-0.036 Sum_probs=77.0
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV-TNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 472 (544)
..+.+++++|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+... ..| ...+|..|+.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566777777777777775 334455556666777778888877777776654 333 345777777788888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChH
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 504 (544)
++.|+++++++|+|......|-++-.+.+..+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888877777777666665555
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.36 E-value=2e-06 Score=80.06 Aligned_cols=109 Identities=8% Similarity=-0.091 Sum_probs=91.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcC
Q 044352 390 SVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHG 467 (544)
Q Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 467 (544)
.-...+...|+++.|+..|.++.+. .+.+...|..++.+|...|++++|+..++++. .+.+...+..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3455667889999999999999874 45567788889999999999999999999874 4446778888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 468 RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
++++|+..|+++++++|.++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888776665444
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=8.6e-06 Score=70.40 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=93.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc---CChHHHHHHHHHHHHcCCCCchhHH
Q 044352 417 VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH---GRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
.+.|...|..|+..|...|+.+.|..-|.+.. ..+++..+..++.++... ....++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 46788899999999999999999999998874 456677777777765432 3578999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceE
Q 044352 492 MLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSR 526 (544)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 526 (544)
.|+..+...|++.+|...|+.|++.....+|..+-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 99999999999999999999999987666664443
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=4e-07 Score=65.05 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhCC-CCC---ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 434 SGRMVEAYDLLRQVP-MYV---TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
.|++++|+.+++++. ..| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666665553 111 344555567777777888888888777 666676667777778888888888888887
Q ss_pred HHH
Q 044352 510 RKI 512 (544)
Q Consensus 510 ~~~ 512 (544)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0048 Score=61.41 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 044352 455 MAGAFRNGCNIHGR---RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQP 522 (544)
Q Consensus 455 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 522 (544)
+.+.++..+.+.++ +-+|+.+++..+..+|.|+.+-..++.+|.-.|-+..|.+.|+.+--++|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 34566677777665 568889999999999999999999999999999999999999988766665554
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6.5e-06 Score=70.62 Aligned_cols=90 Identities=17% Similarity=0.041 Sum_probs=80.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHH
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHE 505 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 505 (544)
+.-+.+.+++.+|+..|.++. .+.+...|..-+.+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445678899999999999875 455677788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 044352 506 AENLRKIMKEKN 517 (544)
Q Consensus 506 A~~~~~~~~~~~ 517 (544)
|++.|++.++-.
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999999987643
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.9e-05 Score=69.43 Aligned_cols=273 Identities=11% Similarity=-0.002 Sum_probs=162.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccC
Q 044352 220 IIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPN-NVTVTGVLQAGGLTG 298 (544)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 298 (544)
....+.+..++..|+..+....+.. +.+..-|..-+..+...++++++.--.++-++. .|. .......-+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhH
Confidence 4456666677777777777776664 334555555666666667777766555544422 221 223333334444444
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----ccHHHHHHH-HHHHHhcCChHHHHHH
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----KNVASWNAM-IGCYGKHGMVDSSIEL 372 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-~~~~~~~g~~~~A~~~ 372 (544)
+..+|.+.++ +...+ ....+...++.+.. |....|..+ ..++...|++++|...
T Consensus 132 ~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444433 11111 11122222222221 112233333 2345567888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhH-------------HHHHHHHHHhcCCHHH
Q 044352 373 FERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEH-------------YACVVDMLCRSGRMVE 439 (544)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~ 439 (544)
--..++.. ..+......-..++...++.+.+...|++... ..|+... +..-+.-..+.|++..
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 77766642 22222222222334456778888888877653 3444221 1222334567899999
Q ss_pred HHHHHHhCC-C-----CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 440 AYDLLRQVP-M-----YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 440 A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
|.+.|.+.. + .++...|...+.+..+.|+.++|+.-.+++++++|.-..++..-+.++...++|++|.+.++++
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998764 2 3334456666667788899999999999999999988888888999999999999999999998
Q ss_pred HhcCCC
Q 044352 514 KEKNVQ 519 (544)
Q Consensus 514 ~~~~~~ 519 (544)
.+..-.
T Consensus 348 ~q~~~s 353 (486)
T KOG0550|consen 348 MQLEKD 353 (486)
T ss_pred Hhhccc
Confidence 875443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.25 E-value=2.4e-05 Score=60.45 Aligned_cols=106 Identities=8% Similarity=0.059 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGV-KISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT----NSMAGAFR 460 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 460 (544)
++..++..+...|++++|...+..+.+...- +.....+..++.++.+.|++++|...|+.+. ..|+ ..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666677777888888888777664211 1113456667777888888888888887753 1222 45677778
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 461 NGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
.++...|+.++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88889999999999999999999987765543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=2.3e-05 Score=73.11 Aligned_cols=90 Identities=9% Similarity=-0.073 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
....+...|++++|+..|++++... +.+...+..+..+|...|++++|+..++++... .+.+...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3455677888889999988888862 446677888888888888999999888888763 3446677888888888889
Q ss_pred CHHHHHHHHHhCC
Q 044352 436 RMVEAYDLLRQVP 448 (544)
Q Consensus 436 ~~~~A~~~~~~~~ 448 (544)
++++|...|+++.
T Consensus 85 ~~~eA~~~~~~al 97 (356)
T PLN03088 85 EYQTAKAALEKGA 97 (356)
T ss_pred CHHHHHHHHHHHH
Confidence 9999988888764
No 156
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00038 Score=55.39 Aligned_cols=133 Identities=10% Similarity=0.029 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHH
Q 044352 381 MRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVTNSMA 456 (544)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 456 (544)
..|+...-..+..+....|+..+|...|++...- .+..|......+..+....+++..|...++++- ...++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777777888888888888888888888763 446677788888888888888888888887752 22334556
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..++..+...|++..|+..|+.++.--| .+.....++..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677888889999999999999988887 578888888889999988888766555543
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.21 E-value=2e-05 Score=65.36 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV---T-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
...+..++..+...|++++|...|+++. ..| + ...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3456667777777888888888877653 112 1 3567788888999999999999999999999999999999999
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhcC
Q 044352 496 ICAADGE--------------WHEAENLRKIMKEKN 517 (544)
Q Consensus 496 ~~~~~g~--------------~~~A~~~~~~~~~~~ 517 (544)
++...|+ +++|.++++++.+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988877 566777777766544
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0012 Score=59.51 Aligned_cols=261 Identities=8% Similarity=-0.126 Sum_probs=154.2
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHh
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAF 90 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 90 (544)
........+.+..++..|+..+..+++. |.+.. .|..-+..+...|++++|..-.+.-. +..+....-.-+++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~-yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNAS-YYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchh-hhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 3445556677788999999999999999 77766 88888899999999999887765443 2222222223333333
Q ss_pred cCCHHHHHHHHH---------------HHHhccc-ccCHHHHHHHH-HHhhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 044352 91 TGNFQEAIGYFS---------------LMREFIY-RCNKFTFSIVL-KACVGLLDIKKGKQVHAVATQMGFENDVSVGNA 153 (544)
Q Consensus 91 ~~~~~~A~~~~~---------------~~~~~~~-~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 153 (544)
.++..+|.+.++ ....... +|.-.++..+- ..+.-.|+.+.|.++--.+++.. +.+......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHh
Confidence 333333333222 2222111 12223333332 33456788888888877777654 333333333
Q ss_pred HHHHHHhCCCHHHHHHHHhhccCCChhh---------------HHHHHHHHhccCChhHHHHHHHHHHHc---CCCCCHh
Q 044352 154 LIDMYSKCGLLCSARRVFHGMFERDVVS---------------WTSMISGYCNVSKVDEAVVLFERMKLE---GLEPNQF 215 (544)
Q Consensus 154 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 215 (544)
-..++--.++.+.|...|++....++.. |..-..-..+.|++..|.+.|.+.+.. ++.|+..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 3344555678888888888886644332 222233445677788888888777643 2344455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 044352 216 TYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVS 278 (544)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (544)
.|........+.|+..+|+.--+...+.+ ..-...|..-..++...++|++|++-|++..+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56556666667777777777777766331 001122333345566677777777777776654
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=8.3e-06 Score=56.49 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=52.9
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 461 NGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
..|.+.+++++|.+.++++++++|+++..+...+.++.+.|++++|.+.++++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678899999999999999999999999999999999999999999999999987654
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=3.5e-06 Score=57.42 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=46.6
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 464 NIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|++++|+..|+++++.+|+++.++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999998887654
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=98.14 E-value=2.9e-05 Score=61.10 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
.......+...|++++|..+|.-+. ..-+...|..|+.++...+++++|+..|..+..++++||.+....+.++...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344555678899999999988753 45567788888888889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 044352 502 EWHEAENLRKIMKEK 516 (544)
Q Consensus 502 ~~~~A~~~~~~~~~~ 516 (544)
+.++|+..|+.++++
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988773
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.13 E-value=2.5e-05 Score=64.51 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV----TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLS 494 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 494 (544)
....+..++..+...|++++|...|+++. ..+ ...++..++..+...|++++|+..++++++++|.+...+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34566777778888889999988888763 222 2347888889999999999999999999999999999999999
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 044352 495 NICA-------ADGEWHEAENLRKIM 513 (544)
Q Consensus 495 ~~~~-------~~g~~~~A~~~~~~~ 513 (544)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666655544
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.12 E-value=6.3e-06 Score=55.47 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 487 (544)
++..+...|++++|.+.|+++. .+.+...+..++.++...|++++|+..|+++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5667888999999999998874 333577888999999999999999999999999999875
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.00028 Score=68.85 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
..+..++......|++++|...++++++++| +..+|..+|.++...|+.++|.+.++++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344443334444555555555555555555 3445555555555555555555555555443
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=2.3e-05 Score=55.87 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHhhcCChHHHHHHHH
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYV-TNSMAGAFRNGCNIHGRRDLAVTMGE 477 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (544)
|+++.|+.+++++.+.....++...+..++.+|.+.|++++|..++++....+ +......++.++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44555555555554431111123333334555555555555555554422111 12333333445555555555555554
Q ss_pred H
Q 044352 478 E 478 (544)
Q Consensus 478 ~ 478 (544)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=6.6e-05 Score=55.19 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc
Q 044352 389 ISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH 466 (544)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 466 (544)
..+...+...|++++|...++.+.+. .+.+...+..++..+...|++++|.+.++... .+.+...+..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 33444555566666666666666542 22333455556666666666777766666542 233345666666777777
Q ss_pred CChHHHHHHHHHHHHcCC
Q 044352 467 GRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 467 g~~~~A~~~~~~~~~~~p 484 (544)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777888877777777665
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.01 E-value=0.00033 Score=68.33 Aligned_cols=143 Identities=10% Similarity=0.013 Sum_probs=103.8
Q ss_pred cCCccHHHHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcC--------CchHHHHHHHHH
Q 044352 345 TRIKNVASWNAMIGCYGK--H---GMVDSSIELFERMLEEGMRANE-VTLISVLSACSHG--------GLVEKGLEIFRS 410 (544)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~ 410 (544)
....+...|...+++... . ++...|..+|++.++. .|+. ..+..+..++... .++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 334678889888887544 2 2367899999999995 5654 4555554444322 123344444444
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 411 MKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
.......+.++..+..+...+...|++++|...++++. ..|+..+|..++..+...|+.++|...|++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 33321234456778888777788899999999999975 56788889999999999999999999999999999988853
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=0.00027 Score=58.61 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044352 350 VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN--EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACV 427 (544)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 427 (544)
...+..+...+...|++++|...|++.......+. ...+..+..++...|++++|...+.+..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34677777788888888888888888876432222 356777777888888888888888888763 33345666677
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 428 VDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
+.++...|+...+..-++.+ ...+++|.+.++++++.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 77777777766555433321 123788899999999999876
No 169
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=46.02 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCN 112 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 112 (544)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=2.1e-05 Score=53.66 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCC
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHG-RRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 484 (544)
++..|..++..+...|++++|+..|+++. .+.+...+..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677778888888888888888888764 4456778888888999998 79999999999999887
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=45.61 Aligned_cols=33 Identities=36% Similarity=0.850 Sum_probs=20.3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCC
Q 044352 181 SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPN 213 (544)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 213 (544)
+|++++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666554
No 172
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.9e-05 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 044352 79 FMLNWMVMASAFTGNFQEAIGYFSLMREFIYRC 111 (544)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 111 (544)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=4.4e-05 Score=59.84 Aligned_cols=93 Identities=5% Similarity=-0.077 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG 125 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 125 (544)
....++..+...|++++|..+|+-+. +.+..-|..|..++-..|++++|++.|......++ -|+..+..+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 45556666666777777777776654 45555666666666777777777777777666542 255566666666677
Q ss_pred CCChHHHHHHHHHHHHc
Q 044352 126 LLDIKKGKQVHAVATQM 142 (544)
Q Consensus 126 ~~~~~~a~~~~~~~~~~ 142 (544)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766654
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.93 E-value=0.0038 Score=59.69 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh-----------
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNS----------- 454 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----------- 454 (544)
++..+...+.+...+.-|-++|.++-. ...++......+++++|..+-++.+ ..++..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 333344444444555555555555422 1234455555566666666555554 111111
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
-+...-.+|.+.|+..+|..+++++..
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 011111255566677777777766543
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2e-05 Score=44.77 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 044352 250 VTWNAMISGFAQSKRENEALKLFKGMLVSGIKP 282 (544)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (544)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666655554
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=1.5e-05 Score=54.18 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 433 RSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 433 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
..|++++|.++|+++. .+.+...+..++.+|.+.|++++|..+++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3444555555554442 233444555555555555555555555555555555554444443
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.1e-05 Score=45.33 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHH
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICAADGEWHEAEN 508 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 508 (544)
.|+++++++|+|+.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00012 Score=64.34 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCh
Q 044352 432 CRSGRMVEAYDLLRQVP-MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK---PDGFVMLSNICAADGEW 503 (544)
Q Consensus 432 ~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 503 (544)
.+.|++++|...|+... ..|+ +.++..++.+|...|++++|...|+.+++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33445555554444432 1121 2344555555555566666666666665555443 33444445555555666
Q ss_pred HHHHHHHHHHHhc
Q 044352 504 HEAENLRKIMKEK 516 (544)
Q Consensus 504 ~~A~~~~~~~~~~ 516 (544)
++|..+|+++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 179
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.90 E-value=0.025 Score=54.17 Aligned_cols=405 Identities=11% Similarity=0.030 Sum_probs=218.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 044352 77 NVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALI 155 (544)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 155 (544)
+...|..++.---...+.+.+..++..++.. .|-.. -|......=.+.|..+.+..+|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3345555555444444445555666666642 34333 2333333335677777788888777754 556666666555
Q ss_pred HHHH-hCCCHHHHHHHHhhccC------CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH---
Q 044352 156 DMYS-KCGLLCSARRVFHGMFE------RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYA--- 225 (544)
Q Consensus 156 ~~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 225 (544)
..+. ..|+.+.....|+.... .+...|...+..-..++++.....+|+++++. | ...|+..-..|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 5443 34666677777776644 34556777777777777788888888877743 1 222222222211
Q ss_pred hc------CChHHHHHHHHHhhhC-C---CCCCHhHHHHHHHHHH-cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 044352 226 RR------GDSNAAFAFFSRMTAE-G---FVPDLVTWNAMISGFA-QSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAG 294 (544)
Q Consensus 226 ~~------~~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (544)
.. ...+++.++-...... . ..+....+..-+.--. ..+..+++.....+... .--..+
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHH
Confidence 11 1122222221111110 0 0000111111110000 01111111111111000 000011
Q ss_pred hccCchHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc---HHHHHHHHHHHHhcC
Q 044352 295 GLTGSIQIGREIHALVCRM---GL----HIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN---VASWNAMIGCYGKHG 364 (544)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 364 (544)
.........+..++.-... .+ .+....|...+..-...|+.+.+.-+|++...|- ...|-..+.-....|
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 1111112222222222221 11 1234567777777788999999999999888653 346666666666679
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH---
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAY--- 441 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--- 441 (544)
+.+-|..++.+..+--++..+.+-..-...+-..|+++.|..+++.+.+. .+.-...-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 99999988888777544434443333334455678999999999999885 3222333334455567888888887
Q ss_pred HHHHhCC-CCCChhHH----HHHHH-HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 442 DLLRQVP-MYVTNSMA----GAFRN-GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 442 ~~~~~~~-~~~~~~~~----~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
+++.... ...+.... ....+ .+...++.+.|..++.++.+..|++...|..+.....-.+
T Consensus 424 ~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 424 ELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5555442 22222222 22222 3446789999999999999999999999999988877665
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00053 Score=61.65 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA-CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
.+|..++....+.+..+.|..+|.+..+. ...+..+|...+.. +...++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 36777888888888899999999999854 24456666666655 33356777799999999885 4567778888899
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 430 MLCRSGRMVEAYDLLRQVP-MYV----TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
.+...|+.+.|..+|++.. .-+ ....|..++..-.+.|+.+...++.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999874 222 2347888888888999999999999999998886443
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.023 Score=55.09 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEE-GMRANEVTLISVLSACSHGGLVEKGLEIFRSMK 412 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (544)
.+..|.+-....|..+.|+..--.+.+. .+-|....|..+.-+-+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3444555556677888777765444432 255666777777666665555555555555543
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.87 E-value=7.3e-05 Score=68.99 Aligned_cols=67 Identities=15% Similarity=0.005 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG---FVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+.+...++.++.+|...|++++|+..|+++++++|+++.+ |..++.+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445677777777777777777777777777777777643 777777777777777777777777764
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.00023 Score=53.93 Aligned_cols=86 Identities=21% Similarity=-0.006 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC----CCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHH
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVP----MYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR---KPDGFVMLSNICA 498 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 498 (544)
...++...|+.++|+.+|++.. ..+ ....+..++..+...|++++|+.++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3344444555555555554432 000 1223444555555666666666666666655554 4444444555566
Q ss_pred hcCChHHHHHHHHH
Q 044352 499 ADGEWHEAENLRKI 512 (544)
Q Consensus 499 ~~g~~~~A~~~~~~ 512 (544)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666655433
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.83 E-value=3.9e-05 Score=46.52 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
.++..++.+|...|++++|+++|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988875
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.0017 Score=58.76 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHhcC-CchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC----Ch-hHHH
Q 044352 392 LSACSHG-GLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEAYDLLRQVP----MYV----TN-SMAG 457 (544)
Q Consensus 392 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~-~~~~ 457 (544)
...|... |+++.|++.|++..+.+..... ..++..++..+.+.|++++|.++|+++. ..+ +. ..+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3345555 6666666666665543221111 2344555666667777777777766542 011 11 1222
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
..+-++...||...|...+++....+|
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 233345556777777777777776665
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00042 Score=64.75 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 218 NAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVL 291 (544)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (544)
.++++.|...|..+.++.++..=..-|+-||..+++.|+..+.+.|++..|.++...|..++...+..|....+
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444333333333333
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00016 Score=62.69 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=59.1
Q ss_pred ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhcccccCHHHH
Q 044352 43 DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTG---NFQEAIGYFSLMREFIYRCNKFTF 116 (544)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~ 116 (544)
|.|.. -|..|+.+|...|+++.|...|.+.. ++|+..+..+..++..+. ...++..+|++++..+. -|..+.
T Consensus 153 P~d~e-gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAE-GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCch-hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 55555 66666667666666666666666554 555666666555554332 34566666766666321 134445
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcC
Q 044352 117 SIVLKACVGLLDIKKGKQVHAVATQMG 143 (544)
Q Consensus 117 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 143 (544)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 555555666677777777777776664
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.80 E-value=0.0002 Score=64.17 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=132.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHH--Hc--CCCC-CHHHHHHHHH
Q 044352 222 ASYARRGDSNAAFAFFSRMTAEGFVPDL----VTWNAMISGFAQSKRENEALKLFKGML--VS--GIKP-NNVTVTGVLQ 292 (544)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~~-~~~~~~~l~~ 292 (544)
.-+++.|+......+|+...+.| ..|. ..|..|..+|.-.+++++|+++-..=+ .. |-+. ...+-..+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788899999999999988877 3343 346667777777888888887654311 11 1110 1112223333
Q ss_pred HhhccCchHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChH
Q 044352 293 AGGLTGSIQIGREIHAL----VCRMGLH-IDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 367 (544)
.+-..|.+++|...-.+ ..+.|-. ....++..+...|...|+.-....--+. -.++.=+. ..++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~------g~f~~ev~-----~al~ 172 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK------GAFNAEVT-----SALE 172 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc------ccccHHHH-----HHHH
Confidence 34445556665543322 2222211 1123344444455444321100000000 00000000 0111
Q ss_pred HHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhcCCchHHHHHHHHHH---HHHhCCCC-chhHHHHHHHHHHhcCCHH
Q 044352 368 SSIELFERMLE----EGMR-ANEVTLISVLSACSHGGLVEKGLEIFRSM---KERYGVKI-SKEHYACVVDMLCRSGRMV 438 (544)
Q Consensus 368 ~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 438 (544)
.|.++|.+-++ .|-. .....|..+...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 22222222111 1100 01123444444445556666666554432 12223221 2334555666666666666
Q ss_pred HHHHHHHhCC--------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC------CCCchhHHHHHHHHHhcCChH
Q 044352 439 EAYDLLRQVP--------MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG------LRKPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 439 ~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 504 (544)
.|.+.|+... ......+.+++++.|.-..++++|+.++.+-+.+- .....++..|+.++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 6666665421 11223344556666666666666666666544422 123345666666666666666
Q ss_pred HHHHHHHHHHh
Q 044352 505 EAENLRKIMKE 515 (544)
Q Consensus 505 ~A~~~~~~~~~ 515 (544)
+|+.+.+.-++
T Consensus 333 kAl~fae~hl~ 343 (639)
T KOG1130|consen 333 KALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00063 Score=56.16 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRA--NEVTLISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
.|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555556666666666666666665532111 123455555566666666666666666554
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0071 Score=54.71 Aligned_cols=129 Identities=12% Similarity=0.180 Sum_probs=56.2
Q ss_pred HHHHhc-CChHHHHHHHHHhhhC----CCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----CHH-HHH
Q 044352 222 ASYARR-GDSNAAFAFFSRMTAE----GFVP--DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKP-----NNV-TVT 288 (544)
Q Consensus 222 ~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~ 288 (544)
..|... |+++.|++.|++..+. | .+ -...+..+...+.+.|++++|.++|+++....... +.. .+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 344444 5555555555554321 1 11 12234445556666666666766666665432111 111 122
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHhcCCccHH
Q 044352 289 GVLQAGGLTGSIQIGREIHALVCRMG--LHID--VFTGSALIDMYSK--CGSLKDARTLFEITRIKNVA 351 (544)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~ 351 (544)
..+-++...||...|...++...... +..+ ......++.++-. ...++.+..-|+.+.+.|..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 23334444556666666665554432 1111 2334445555543 23455666666666655543
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0083 Score=48.05 Aligned_cols=140 Identities=12% Similarity=-0.034 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 044352 90 FTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARR 169 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 169 (544)
..=|++....-..+-.. +.|+...-..+..+..+.|+..+|...|++...--+..|....-.+.++....+++..|..
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 33344444333333332 3455555556666666667777777777666655455566666666666666666666666
Q ss_pred HHhhccC-----CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044352 170 VFHGMFE-----RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAA 233 (544)
Q Consensus 170 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 233 (544)
.++++.+ +++.....+.+.+...|.+.+|..-|+..... -|+...-......+.+.|+.+++
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 6666643 23334445556666666666666666666554 33333333333344455544444
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.035 Score=51.20 Aligned_cols=136 Identities=10% Similarity=0.101 Sum_probs=79.6
Q ss_pred hhccchhhhhhHHhHHHhhc-ccchh-----hHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHHH--HHhcC
Q 044352 23 CMKSKALRQGKQVHALLCTN-DLNIF-----SLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVMA--SAFTG 92 (544)
Q Consensus 23 ~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~--~~~~~ 92 (544)
+-+++++.+|..+|.++.+. ..++. -.-..++++|.. ++.+.-...+.... .+ ...|..+..+ +.+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 45889999999999999988 43322 033456666654 33333333333332 12 3345555443 45788
Q ss_pred CHHHHHHHHHHHHhc--cccc------------CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----CCChhHHHHH
Q 044352 93 NFQEAIGYFSLMREF--IYRC------------NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGF----ENDVSVGNAL 154 (544)
Q Consensus 93 ~~~~A~~~~~~~~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l 154 (544)
.+.+|++.+...... +..| |-..=+..+..+...|++.++..+++++...=+ .-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999888877654 2222 111113344556677888887777777665432 3566677765
Q ss_pred HHHHHh
Q 044352 155 IDMYSK 160 (544)
Q Consensus 155 ~~~~~~ 160 (544)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 555544
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00083 Score=48.84 Aligned_cols=74 Identities=22% Similarity=0.389 Sum_probs=40.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC-CCCHhHHHHHHHHHHcCC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 221 IASYARRGDSNAAFAFFSRMTAEGF-VPDLVTWNAMISGFAQSK--------RENEALKLFKGMLVSGIKPNNVTVTGVL 291 (544)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (544)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555666666665555 556666665555544432 1224555666666666666666666665
Q ss_pred HHh
Q 044352 292 QAG 294 (544)
Q Consensus 292 ~~~ 294 (544)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 544
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.72 E-value=0.00061 Score=60.05 Aligned_cols=103 Identities=7% Similarity=-0.011 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKI-SKEHYACVVDMLCRSGRMVEAYDLLRQVP-----MYVTNSMAGAFR 460 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~ 460 (544)
.|...+....+.|++++|...|+.+.+.+.-.+ .+..+..++.+|...|++++|...|+.+. .+..+.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444566888888888888887521111 13567788888888888888888888763 222355677777
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 461 NGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
.++...|+.++|...|+++++..|++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 78889999999999999999999976543
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00072 Score=51.23 Aligned_cols=107 Identities=9% Similarity=-0.004 Sum_probs=74.3
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhc---ccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCC----chhHHHH
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTN---DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPN----VFMLNWM 84 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l 84 (544)
.+.+.+..++-..|+.++|+.+|++++.. .+....++..+++.+...|++++|..+|+... .|+ ......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46677888888899999999999999887 22222377788888888899999999988766 232 2233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhh
Q 044352 85 VMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACV 124 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 124 (544)
..++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4566778888888888766554 23335555555543
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00073 Score=49.09 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=66.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHhhhCCCCCCHhHHHH
Q 044352 184 SMISGYCNVSKVDEAVVLFERMKLEGL-EPNQFTYNAIIASYARRG--------DSNAAFAFFSRMTAEGFVPDLVTWNA 254 (544)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (544)
..|..+...+++.....+|..+++.|+ .|+..+|+.++.+.+++. .+-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666999999999999999999 899999999999887653 24467889999999999999999999
Q ss_pred HHHHHHc
Q 044352 255 MISGFAQ 261 (544)
Q Consensus 255 l~~~~~~ 261 (544)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9988764
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.69 E-value=0.038 Score=49.92 Aligned_cols=292 Identities=16% Similarity=0.165 Sum_probs=185.6
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHhhhCCCCCCHhHHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 044352 217 YNAIIASYA--RRGDSNAAFAFFSRMTAEGFVPDLVTWNAMIS--GFAQSKRENEALKLFKGMLVSGIKPNNV--TVTGV 290 (544)
Q Consensus 217 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 290 (544)
|..|-.++. -.|+-..|.++-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|.. .|... -+..+
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 444444333 346666666665543321 1223333333333 33447888888888888873 22221 23334
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CccHH--HHHHHHHHHH--
Q 044352 291 LQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR-----IKNVA--SWNAMIGCYG-- 361 (544)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~-- 361 (544)
.-...+.|+.+.|.++-....+.. +.-.......+...+..|+|+.|+++++.-. ++++. .--.|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444467788888888887776654 3346677888889999999999999987443 34332 1122222211
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044352 362 -KHGMVDSSIELFERMLEEGMRANEV-TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 362 -~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (544)
-.-+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta- 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTA- 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcH-
Confidence 12356677777666665 466543 3344566788999999999999998765 5565554322 344556543
Q ss_pred HHHHHHhC----C-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHH
Q 044352 440 AYDLLRQV----P-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD-GEWHEAENLRKIM 513 (544)
Q Consensus 440 A~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 513 (544)
+.-+++. . .+.+..+...+..+....|++..|..-.+.+....|. ...|..|+.+-... |+-.++...+-+.
T Consensus 312 -~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 -LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred -HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3323222 1 2445667778888889999999999999999999995 67788888887765 9999999999887
Q ss_pred HhcCCCCCCCce
Q 044352 514 KEKNVQKQPGFS 525 (544)
Q Consensus 514 ~~~~~~~~~~~~ 525 (544)
++.. .+|.|+
T Consensus 390 v~AP--rdPaW~ 399 (531)
T COG3898 390 VKAP--RDPAWT 399 (531)
T ss_pred hcCC--CCCccc
Confidence 7643 455554
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.0096 Score=52.17 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=27.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHh-H---HHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 044352 223 SYARRGDSNAAFAFFSRMTAEGFVPDLV-T---WNAMISGFAQSKRENEALKLFKGMLVS 278 (544)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (544)
.+...|++++|.+.|+.+... -|+.. . .-.++.++.+.+++++|...+++.++.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455666666666665544 22221 1 123445556666666666666666544
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.043 Score=50.07 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGL 400 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (544)
+.+..+.-+...|+...|.++.....-|+-.-|...+.+++..++|++-..+... +-++.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455666778888888888888888888888888888888888776665432 2244667888888888888
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 401 VEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
..+|..++.++. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888887766521 134566778888888887765543
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.65 E-value=0.0002 Score=49.43 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 429 DMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
..|.+.+++++|.++++.+. .+.++..+...+.++...|++++|...++++++.+|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56778888888888888874 455677788888899999999999999999999999877665543
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.63 E-value=0.024 Score=52.13 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCc-------cHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRIK-------NVASWNAMIGCYGK---HGMVDSSIELFERMLEEGMRANEVTLIS 390 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 390 (544)
+...++-.|....+++..+++++.+... .+..-...+-++-+ .|+.++|+.++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445555677777777777777766643 22223334445555 6788888888888665556677777777
Q ss_pred HHHHHhc---------CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHH---HhC-----C-
Q 044352 391 VLSACSH---------GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE----AYDLL---RQV-----P- 448 (544)
Q Consensus 391 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~- 448 (544)
+...|-. ....++|+..|.+.-+ +.|+...--+++..+...|...+ ..++- ..+ .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7665521 2236677777766543 34443333333444444443222 22222 111 1
Q ss_pred -CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 449 -MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 449 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
...+.-.+..++.++.-.|++++|.++++++.++.|+...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1223334466777888899999999999999999876443
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0015 Score=61.16 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=103.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 044352 209 GLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE--GFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVT 286 (544)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (544)
+.+.+......+++.+....+++.+..++.+.... ....-..|.+++++.|...|..+.++.+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777888888888888899999998887754 2222234557999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044352 287 VTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKC 332 (544)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (544)
++.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777666666655
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.031 Score=49.06 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=43.7
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH-H---HHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 044352 76 PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF-T---FSIVLKACVGLLDIKKGKQVHAVATQMG 143 (544)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 143 (544)
.++..+......+...|++++|++.|+.+...- |+.. . ...+..++.+.++++.|...+++..+..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344445555666677888888888888887743 3322 1 2344566677888888888888887764
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0007 Score=60.89 Aligned_cols=129 Identities=9% Similarity=0.009 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR-SGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
.+|..++....+.+..+.|..+|.++.+ ....+..+|...+..-.. .++.+.|..+|+... .+.+...|..++..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3677888888888899999999999974 334456677777666444 566777999999874 56678889999999
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+...|+.+.|+.+|++++..-|.+. ..|..++..-.+.|+.+....+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58899999999999999999999998875
No 205
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00011 Score=40.50 Aligned_cols=29 Identities=38% Similarity=0.911 Sum_probs=16.1
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 044352 181 SWTSMISGYCNVSKVDEAVVLFERMKLEG 209 (544)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (544)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=59.81 Aligned_cols=138 Identities=12% Similarity=-0.032 Sum_probs=102.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
...|.+.|++..|...|++.... -. +...-+.++.... . ..-..++..+..+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKA-E--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhhh
Confidence 45677777777777777776552 00 1111111111111 1 1223467788899999999
Q ss_pred HHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH-HHHHHHH
Q 044352 437 MVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA-ENLRKIM 513 (544)
Q Consensus 437 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 513 (544)
+.+|++..++.. .+++.-+...-+.++...|+++.|+..|+++++++|.|..+-..|+.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998874 5667778888889999999999999999999999999999999999888887776665 7789999
Q ss_pred Hhc
Q 044352 514 KEK 516 (544)
Q Consensus 514 ~~~ 516 (544)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 764
No 207
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00014 Score=40.19 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFI 108 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (544)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.027 Score=47.90 Aligned_cols=137 Identities=9% Similarity=-0.006 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh----CCCCchhHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERY----GVKISKEHYAC 426 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ 426 (544)
...+.++..+.-.|.+.-.+..+.+.++...+.++.....+.+.-.+.|+.+.|...|+...+.. +......+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35567777777888899999999999997555678888899999999999999999999776542 22223333334
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 487 (544)
....|.-.+++.+|...+.+++ .+.++...+.-+-+..-.|+...|++..+.+.+..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4445667788999999998886 445555666555566667899999999999999998643
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.53 E-value=0.0023 Score=49.42 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh---HHHHHH
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVP-----MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG---FVMLSN 495 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~ 495 (544)
+..-+....+.|++++|.+.|+.+. .+-...+-..++.+|.+.|++++|+..+++.++++|.++.+ +...|-
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3344455667778888877777763 12234456678889999999999999999999999887753 555555
Q ss_pred HHHhcCC---------------hHHHHHHHHHHHhc
Q 044352 496 ICAADGE---------------WHEAENLRKIMKEK 516 (544)
Q Consensus 496 ~~~~~g~---------------~~~A~~~~~~~~~~ 516 (544)
++.++.. ..+|...|+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5666655 77788888887764
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.065 Score=48.48 Aligned_cols=290 Identities=13% Similarity=0.028 Sum_probs=186.2
Q ss_pred hHHHHHHHh--hccchhhhhhHHhHHHhhc-ccc--hhhHHHHHHHHhhcCCChHHHHHHhccCC-CCCchh--HHHHHH
Q 044352 15 YLDCLLGKC--MKSKALRQGKQVHALLCTN-DLN--IFSLKSKLVGVYAGCGDVNSARLVFDKIP-NPNVFM--LNWMVM 86 (544)
Q Consensus 15 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~l~~ 86 (544)
.|..|...+ +..||-..|.++-.+.-+. ..| +. ++..-.+.-.-.|++++|.+-|+.|. .|.... ...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepL-IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPL-IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHH-HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 355554443 3667888899988887766 333 33 34444445556799999999999998 333322 333334
Q ss_pred HHHhcCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CCCChhH--HHHHHHHHH---
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMG-FENDVSV--GNALIDMYS--- 159 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~--- 159 (544)
..-+.|+.+.|.++-+..-.. -| -.-....++...+..|+++.|+++.+.-.... +.++..- ...|+.+-.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 445789999999988888764 33 34567888888999999999999998776553 3344322 222332211
Q ss_pred hCCCHHHHHHHHhhccC--CChhh-HHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH---
Q 044352 160 KCGLLCSARRVFHGMFE--RDVVS-WTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAA--- 233 (544)
Q Consensus 160 ~~~~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--- 233 (544)
-..+...|...-.+..+ +|... --.-..++.+.|+..++-.+++.+-+....|+. . .+..+.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLK 316 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHH
Confidence 12356666666655544 45432 233457788999999999999999877444443 2 33344566654322
Q ss_pred -HHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHH
Q 044352 234 -FAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL-TGSIQIGREIHALVC 311 (544)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 311 (544)
.+-++.|+ +.+...-..+..+-...|++..|..--+.... ..|....|..+...-.. .||-.++...+.+..
T Consensus 317 Ra~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 11223333 34556666777888889999888777666654 36777777777776544 499999999988887
Q ss_pred HcCCCC
Q 044352 312 RMGLHI 317 (544)
Q Consensus 312 ~~~~~~ 317 (544)
+..-.|
T Consensus 391 ~APrdP 396 (531)
T COG3898 391 KAPRDP 396 (531)
T ss_pred cCCCCC
Confidence 764333
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.51 E-value=0.00019 Score=50.38 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcC----CCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMG----LRK---PDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.++..++..|...|++++|+..|++++++. +++ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466778888889999999999999988642 222 34688899999999999999999998764
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00063 Score=61.47 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 453 NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
..++.+++.++.+.+++.+|++...++++++|+|.-++..-+.+|...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34677888899999999999999999999999999999999999999999999999999998754
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.019 Score=48.98 Aligned_cols=166 Identities=17% Similarity=0.094 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--c----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHH
Q 044352 324 ALIDMYSKCGSLKDARTLFEITRI--K----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANE--V--TLISVLS 393 (544)
Q Consensus 324 ~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~--~~~~l~~ 393 (544)
.....+...|++.+|...|+.+.. | -......++.++.+.|+++.|...+++++.. .|+. . .+-.+..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 344445566666666666666553 1 1234455666677777777777777776664 2221 1 1111111
Q ss_pred HHh-----------cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 044352 394 ACS-----------HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNG 462 (544)
Q Consensus 394 ~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 462 (544)
++. ..+....|...|+.+..++ | ......+|...+..+... -..--..++..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P-------------~S~y~~~A~~~l~~l~~~-la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---P-------------NSEYAEEAKKRLAELRNR-LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----T-------------TSTTHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC---c-------------CchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 111 1122344555555555432 1 122222333222222100 00111235667
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPD---GFVMLSNICAADGEWHEAEN 508 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 508 (544)
|.+.|.+..|..-++.+++.-|+.+. ++..++.+|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88999999999999999999987654 56778889999999885543
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.003 Score=52.29 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHhhc--cCCChhhHHHHHHHHhc-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 044352 169 RVFHGM--FERDVVSWTSMISGYCN-----VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYAR 226 (544)
Q Consensus 169 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (544)
..|+.. ..++-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 344444 34566666666666654 46677777778888888888888888888877644
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.012 Score=50.00 Aligned_cols=133 Identities=9% Similarity=-0.065 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCChhHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--------MYVTNSMAGA 458 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~ 458 (544)
....++..+.-.|.+.-....+.++.+. ..+.++.....+++.-.+.|+.+.|..+|++.. .........+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556677777889999999999999886 667788888999999999999999999998542 2223334444
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQK 520 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 520 (544)
....+.-.+++.+|...+.+.+..+|.++.+.+.-+-++.=.|+..+|++.++.+.+....+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 55567778899999999999999999999999999999999999999999999998765433
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.11 Score=47.42 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhc
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIH 466 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (544)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++... ..+|..|...+.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566777888887777664443 44 7888899999999999999988887654 34667888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044352 467 GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLR 510 (544)
Q Consensus 467 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 510 (544)
|+..+|..+..+ .....-...|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHH
Confidence 999999998877 11256677888999999997763
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.0021 Score=57.92 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccc---cCHHHHHHHHHHhhCCCChHHHHHHHH
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYR---CNKFTFSIVLKACVGLLDIKKGKQVHA 137 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 137 (544)
-+++.|+....+.+|+..++.|.. .=...|..+..+|.-.+++++|.+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 467788888888888888876533 112345666667777778888877653
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.062 Score=45.84 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 044352 221 IASYARRGDSNAAFAFFSRMTAEGF--VPDLVTWNAMISGFAQSKRENEALKLFKGMLVS 278 (544)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (544)
...+...|++.+|.+.|+.+..... +-.....-.++.++.+.|+++.|...+++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455666666666666654410 111223344555666666666666666666544
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0039 Score=53.70 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=39.9
Q ss_pred cCCchHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHhhcCChH
Q 044352 397 HGGLVEKGLEIFRSMKERYGV-KISKEHYACVVDMLCRSGRMVEAYDLLRQVP-----MYVTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~ 470 (544)
+.|++..|...|....+.+.- ......+.+|++++...|++++|..+|..+. .+.-+.++.-++.+....|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444555555555555553110 1112334444455555555555444444331 1112334444444444444444
Q ss_pred HHHHHHHHHHHcCCCCc
Q 044352 471 LAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~ 487 (544)
+|...|+++++..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 44444444444444433
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.24 Score=48.99 Aligned_cols=336 Identities=12% Similarity=0.035 Sum_probs=168.5
Q ss_pred cCCCCChhHHHH-----HHHHHHhCCCHHHHHHHHhhccCCC---hhhHHHHHHHHhccCCh--hHHHHHHHHHHHcCCC
Q 044352 142 MGFENDVSVGNA-----LIDMYSKCGLLCSARRVFHGMFERD---VVSWTSMISGYCNVSKV--DEAVVLFERMKLEGLE 211 (544)
Q Consensus 142 ~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~ 211 (544)
.|++.+..-|.. ++.-+...+.+..|.++-..+..|. ...|......+.+..+. +++.+..++=.... -
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 355655554443 4555666777888888777775544 34555555555555322 22222222211111 1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044352 212 PNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFV----PDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTV 287 (544)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (544)
-...+|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-....|+.+-...++-++...- +...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 33456677777777788888887776552222100 011223333444445555555555554443221 11111
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hc-----CCccHHHHHHHHHHH
Q 044352 288 TGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFE--IT-----RIKNVASWNAMIGCY 360 (544)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~-----~~~~~~~~~~l~~~~ 360 (544)
.. ...+...|..+|....+..-. . .+-..| +.++...+...|. .. ...-..........+
T Consensus 582 ~~------~l~~~p~a~~lY~~~~r~~~~---~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 582 FM------TLRNQPLALSLYRQFMRHQDR---A---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HH------HHHhchhhhHHHHHHHHhhch---h---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11 112233444444444432100 0 011112 1222222222111 10 001111122222333
Q ss_pred HhcCC----------hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 361 GKHGM----------VDSSIELFERMLE-EGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 361 ~~~g~----------~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
.+... ..+-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLT 723 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHH
Confidence 33222 1111222222222 1222333345555666677788888887765542 467788888888
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
++...+++++-.++-+... .+..|.-...+|.+.|+.++|.+++-+. ++.+ -...+|.+.|++.+|.++
T Consensus 724 aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv----~~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV----GGLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc----CChH----HHHHHHHHhccHHHHHHH
Confidence 8888888888877777654 3566666777888899988888876554 1111 567788888888888775
Q ss_pred H
Q 044352 510 R 510 (544)
Q Consensus 510 ~ 510 (544)
-
T Consensus 793 A 793 (829)
T KOG2280|consen 793 A 793 (829)
T ss_pred H
Confidence 3
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.24 Score=48.47 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 145 ENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
.|.+..|..+.......-.++.|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 456666666666655555556665555544
No 222
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.22 E-value=0.18 Score=46.99 Aligned_cols=139 Identities=9% Similarity=0.004 Sum_probs=94.8
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHH
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLN 82 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 82 (544)
++..|....-..-+.-....||+-.|-+-...++.. +.++. .......++...|+++.+...+.... .....+..
T Consensus 283 q~~~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~-~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 283 QEKQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPV-LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred CcCCcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCch-hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 333443344444455556788888888777777777 55555 55556667778899999998887665 45566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCC
Q 044352 83 WMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFEND 147 (544)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 147 (544)
.+++..-..|+++.|..+-+-|....+. +...........-..|-++++...|.++...+.+.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8888888889999999998888875554 333333333334456778888888888877653333
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.21 E-value=0.0059 Score=50.57 Aligned_cols=89 Identities=20% Similarity=0.362 Sum_probs=64.1
Q ss_pred CCCHhhHHHHHHHHHh-----cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcC----------------CCHHHHH
Q 044352 211 EPNQFTYNAIIASYAR-----RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQS----------------KRENEAL 269 (544)
Q Consensus 211 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 269 (544)
..+..+|..++..|.+ .|.++=....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5677778778877764 467777778888999999999999999999887542 1234566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 044352 270 KLFKGMLVSGIKPNNVTVTGVLQAGGLTGS 299 (544)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (544)
+++++|...|+-||..++..++..+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 666666666666666666666666655543
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.1 Score=50.40 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=43.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHH----------
Q 044352 286 TVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNA---------- 355 (544)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------- 355 (544)
+...+..-+.+...+..|.++|..+-+. ..++......++|++|..+-++.++--...|..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3334444444455555555555554322 234555666666666666666655422222222
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHH
Q 044352 356 ---MIGCYGKHGMVDSSIELFERMLE 378 (544)
Q Consensus 356 ---l~~~~~~~g~~~~A~~~~~~~~~ 378 (544)
.-.+|.+.|+..+|..+++++..
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22345556666666666666544
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=97.19 E-value=0.0079 Score=56.09 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHhc---------CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044352 365 MVDSSIELFERMLEE-GMRAN-EVTLISVLSACSH---------GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR 433 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (544)
..+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+ --+.|+.....++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 345677778887721 13444 3455555554432 1234456666666655 335566666666776777
Q ss_pred cCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH-HHhcCChHHHHHHH
Q 044352 434 SGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI-CAADGEWHEAENLR 510 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 510 (544)
.|+++.|...|+++. .+....+|...+....-.|+.++|.+.++++++++|.-..+-..-.++ .+=....++|+.+|
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 777888888887764 333455666666667777888888888888888887654443333333 22334566666665
Q ss_pred H
Q 044352 511 K 511 (544)
Q Consensus 511 ~ 511 (544)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0075 Score=51.96 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=56.9
Q ss_pred HHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCC
Q 044352 431 LCRSGRMVEAYDLLRQVP-----MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR---KPDGFVMLSNICAADGE 502 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 502 (544)
+.+.|++.+|...|.... ..-.+.++..|+.++...|+++.|...|..+.+-.|+ -|+.+..|+.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445666777777666542 2223445666777777777777777777777775543 34567777777777777
Q ss_pred hHHHHHHHHHHHhcC
Q 044352 503 WHEAENLRKIMKEKN 517 (544)
Q Consensus 503 ~~~A~~~~~~~~~~~ 517 (544)
.++|...|+++.+.-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777777776653
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.046 Score=47.72 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC
Q 044352 337 DARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 337 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 416 (544)
...+++++...+....-..-.......|++.+|...|...... .+-+......++.++...|+.+.|..++..+-..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--
Confidence 3344444444432222222233344555666666666555554 1223444555555555666666666655554321
Q ss_pred CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCchhHHH
Q 044352 417 VKIS-KEHYACVVDMLCRSGRMVEAYDLLRQVPMYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG--LRKPDGFVM 492 (544)
Q Consensus 417 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 492 (544)
...+ ......-+..+.+.....+..++-.+....| |...-..++..+...|+.+.|.+.+-.+++.+ -.+..+-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 1111 1111122333333333333333333332222 44455555555555566666655555555543 344555555
Q ss_pred HHHHHHhcCChHH
Q 044352 493 LSNICAADGEWHE 505 (544)
Q Consensus 493 l~~~~~~~g~~~~ 505 (544)
+..++.-.|..+.
T Consensus 278 lle~f~~~g~~Dp 290 (304)
T COG3118 278 LLELFEAFGPADP 290 (304)
T ss_pred HHHHHHhcCCCCH
Confidence 5555555554443
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.09 E-value=0.047 Score=41.13 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=82.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEA 440 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 440 (544)
.-.|..++..+++.+.... .+..-++.++--....-+-+-..+.++.+-+.|.+.+ -.....++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc----
Confidence 3467777777777777663 3445555555544444455555555555533211111 0122334444444443
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 441 YDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
........+..+...|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++-++++++-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344445567788999999999999998766678999999999999999999999999999998874
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.06 E-value=0.26 Score=45.73 Aligned_cols=436 Identities=11% Similarity=0.027 Sum_probs=222.0
Q ss_pred HhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 044352 35 VHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPN---VFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRC 111 (544)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 111 (544)
+-+++...|.+.. .|..|++-+...|..++-+++++++..|- +.+|...+.+-...+++.....+|.+.+.....
T Consensus 31 LRerIkdNPtnI~-S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 31 LRERIKDNPTNIL-SYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHhhcCchhHH-HHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3333333377777 88888888888888888888888877443 346777777777777888888888887765433
Q ss_pred CHHHHHHHHHHhhCCC------ChHHHHHHHHHHHH-cCCCCC-hhHHHHHHHHH---------HhCCCHHHHHHHHhhc
Q 044352 112 NKFTFSIVLKACVGLL------DIKKGKQVHAVATQ-MGFEND-VSVGNALIDMY---------SKCGLLCSARRVFHGM 174 (544)
Q Consensus 112 ~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---------~~~~~~~~A~~~~~~~ 174 (544)
...|..-+....+.+ .-....+.++-... .++.|- ...|+..+..+ -.+.+++.....+.++
T Consensus 109 -ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 -LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred -HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 333433333222211 11223344444333 233332 22333333222 1233456667777766
Q ss_pred cCC----------ChhhHHHHHHHHhc-------cCChhHHHHHHHHHHH--cCCC----CCHhhHHHHHH---------
Q 044352 175 FER----------DVVSWTSMISGYCN-------VSKVDEAVVLFERMKL--EGLE----PNQFTYNAIIA--------- 222 (544)
Q Consensus 175 ~~~----------~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~--------- 222 (544)
... |-..|..=+..... .--+-.|...++++.. .|.. .+..+++.+-+
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 441 11122111111100 1123455566665532 2322 12233332211
Q ss_pred --HHHhc-----CC-h-HHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 223 --SYARR-----GD-S-NAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQA 293 (544)
Q Consensus 223 --~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (544)
.-... |+ . +..--++++...- +.-....|.--...+...++-++|+..... |++..+.....+-..
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~ 342 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEY 342 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHH
Confidence 10000 00 0 0111111111111 122233333333344455666666665544 322222222222333
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHH
Q 044352 294 GGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSK---CGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 370 (544)
+....+.+.....|+...+.- ..-|. .+..-+. .|+++.-.+++-.-...=..+|...+..-.+..-.+.|.
T Consensus 343 yel~nd~e~v~~~fdk~~q~L----~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDL----KRKYS-MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHH----HHHHh-hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 344444444444444332210 00000 0000000 122222222221111122345666777777777788899
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 044352 371 ELFERMLEEG-MRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP- 448 (544)
Q Consensus 371 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 448 (544)
.+|-+..+.| +.++..++.+++..++ .|+...|..+|+.-... ++.+.......+..+.+.++-..|..+|+...
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999998887 5567777788777654 47888888888876653 34444444566777888899999999998653
Q ss_pred ---CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 449 ---MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 449 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
...-...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 22225577777777777888888888888888877753
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.099 Score=45.74 Aligned_cols=121 Identities=8% Similarity=0.017 Sum_probs=73.6
Q ss_pred HHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHhhcCChH
Q 044352 394 ACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGA---FRNGCNIHGRRD 470 (544)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 470 (544)
.....|++.+|...|+..... .+-+......++++|...|+.+.|..++..++..-....+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 445667777777777777663 333455666677777777888888888777763322222222 222333333333
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 471 LAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+... +++-+..+|+|...-..++..+...|+.++|.+.+=.+++++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3222 444456677777777777777777788877777665555543
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.00089 Score=46.87 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-----CC---CC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP-----MY---VT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
+++.++..|...|++++|+..|+++. .. |+ ..++..++.++...|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555666666666655555432 11 11 335666777777888888888888877654
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.00 E-value=0.0085 Score=44.79 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=39.2
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCc---hhHHHHHHHHHhcCChH
Q 044352 431 LCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG-LRKP---DGFVMLSNICAADGEWH 504 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~~ 504 (544)
+...|+.+.|++.|.+.. .+.....|++-+.++.-.|+.++|+.-+++++++. |... .+|..-+.+|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 334444455544444432 22334445555555555555555555555555543 2111 12444444555555555
Q ss_pred HHHHHHHHHHhc
Q 044352 505 EAENLRKIMKEK 516 (544)
Q Consensus 505 ~A~~~~~~~~~~ 516 (544)
.|+.-|+...+.
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 555555444433
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.071 Score=51.92 Aligned_cols=159 Identities=12% Similarity=0.010 Sum_probs=100.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHh----cCCchHHHHHHHHHHHHHhCCCCchhHHH
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEGMRANEV------TLISVLSACS----HGGLVEKGLEIFRSMKERYGVKISKEHYA 425 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (544)
++....-.|+-+.+++.+.+..+.+---.+. .|..++..++ .....+.|.+++..+.++ .|.+.-...
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3444444566666666666554432111111 2222222222 245678888888888774 333333334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH-HHHHH
Q 044352 426 CVVDMLCRSGRMVEAYDLLRQVPM------YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML-SNICA 498 (544)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~ 498 (544)
.-++.+...|+.++|++.|+++.. +.....+.-++..+....++++|...+.++.+.+.-+...|..+ +.++.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 446677788999999999987541 12234556677778888999999999999999887666665555 45566
Q ss_pred hcCCh-------HHHHHHHHHHHhc
Q 044352 499 ADGEW-------HEAENLRKIMKEK 516 (544)
Q Consensus 499 ~~g~~-------~~A~~~~~~~~~~ 516 (544)
..|+. ++|.++++++...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 77888 8888888888653
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.005 Score=49.45 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hcCCCCCC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK-----EKNVQKQP 522 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 522 (544)
+...++..+...|++++|+..+++++..+|-+...+..++.+|...|+..+|++.|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566678889999999999999999999999999999999999999999999999885 34666655
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.027 Score=44.74 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=42.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044352 360 YGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (544)
+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|+..|...... . ..|+..+...+.+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555555432 223334444444455555555555555554332 1 2333334445555555555555
Q ss_pred HHHHHHhCC
Q 044352 440 AYDLLRQVP 448 (544)
Q Consensus 440 A~~~~~~~~ 448 (544)
|...|+.+.
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
No 236
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.92 E-value=0.58 Score=47.56 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044352 363 HGMVDSSIELFERMLEEG-MRANEV--TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (544)
..+.+.|...+....... +.+... +...+.......+..+++...++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445566777777654432 222211 2233332223332245555555544321 2244444555555557777777
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044352 440 AYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 440 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (544)
+...+..|+ ......-...++.++...|+.++|..+|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777765 12223344555666666777777777777763
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.92 E-value=0.35 Score=45.00 Aligned_cols=416 Identities=13% Similarity=0.072 Sum_probs=203.3
Q ss_pred HHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC---C---------------Cch
Q 044352 19 LLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN---P---------------NVF 79 (544)
Q Consensus 19 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---------------~~~ 79 (544)
+++++ -.++++.-........+. +.... ...-.+-.+-+.++++.|.+.|..-.. . +..
T Consensus 52 ilnAf-fl~nld~Me~~l~~l~~~~~~s~~-l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~ 129 (549)
T PF07079_consen 52 ILNAF-FLNNLDLMEKQLMELRQQFGKSAY-LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF 129 (549)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH
Confidence 34444 445666666666666555 43433 333344444578999999998865431 1 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----cCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CCCChhHHHHH
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYR----CNKFTFSIVLKACVGLLDIKKGKQVHAVATQMG-FENDVSVGNAL 154 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 154 (544)
.-+..++.+...|++.++..+++++..+=.+ .+..+|+.++-.+.+ ..|-++.+.. ...-+..|. +
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYe-m 200 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPDYYE-M 200 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChHHHH-H
Confidence 1234567788999999999999998765333 688888886655432 2333332221 111222333 3
Q ss_pred HHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCChH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNV--SKVDEAVVLFERMKLEGLEPNQFT-YNAIIASYARRGDSN 231 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 231 (544)
+-.|.+.=+.-++. -+++. -|.......++....-. ....--.+++..-...-+.|+-.. ...+...+.. +.+
T Consensus 201 ilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 201 ILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 33333211111110 00111 12222222333222211 111112222222223334444332 2233333333 455
Q ss_pred HHHHHHHHhhhCCCC----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------HHhh-ccCc
Q 044352 232 AAFAFFSRMTAEGFV----PDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVL-------QAGG-LTGS 299 (544)
Q Consensus 232 ~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~-~~~~ 299 (544)
++..+.+.+....+. .=..+|..++....+.++...|.+.+.-+.-- .|+...-..++ ...+ ...+
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~ 354 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDES 354 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHH
Confidence 555555444432111 12356777788888888888888877766532 34333221111 1111 2222
Q ss_pred hHHHHH---HHHHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHhcCC---ccHHHHHHHH----HHHHh---
Q 044352 300 IQIGRE---IHALVCRMGLHIDVFTGSALI---DMYSKCGS-LKDARTLFEITRI---KNVASWNAMI----GCYGK--- 362 (544)
Q Consensus 300 ~~~a~~---~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~--- 362 (544)
...... ++......++. ......-++ .-+-+.|. -++|.++++.+.+ .|...-|.+. ..|.+
T Consensus 355 ~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs 433 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALS 433 (549)
T ss_pred HHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 222222 22332222211 111122222 22223344 6777777776553 2333222221 11211
Q ss_pred cCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 363 HGMVDSSIELFERMLEEGMRA----NEVTLISVLSA--CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
.....+-+.+-+-..+.|++| +...-+.+..+ +...|++.++.-.-.-+. .+.|++.+|.-++-++....+
T Consensus 434 ~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~ 510 (549)
T PF07079_consen 434 MHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKR 510 (549)
T ss_pred hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhh
Confidence 123334444444455567666 23345555544 456788888876655554 457888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhHHH
Q 044352 437 MVEAYDLLRQVPMYVTNSMAG 457 (544)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~~~~ 457 (544)
+++|..++..+| |+..+++
T Consensus 511 Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 511 YQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHHhCC--CchhhHH
Confidence 888888888885 3444443
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.57 Score=47.16 Aligned_cols=216 Identities=12% Similarity=0.026 Sum_probs=137.8
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc--ccc----------------hhhHHHHHHHHhhcCCChHHHHHHhc
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN--DLN----------------IFSLKSKLVGVYAGCGDVNSARLVFD 71 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 71 (544)
..+......++.++...+.+-.-.-+++.+... ... .. ....-+..+.+..-++-|+.+-+
T Consensus 280 s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek-~le~kL~iL~kK~ly~~Ai~LAk 358 (933)
T KOG2114|consen 280 SLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEK-DLETKLDILFKKNLYKVAINLAK 358 (933)
T ss_pred ccCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeec-cHHHHHHHHHHhhhHHHHHHHHH
Confidence 345556677777777777665544444444332 111 11 23345667778888888888877
Q ss_pred cCCCC-C--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh
Q 044352 72 KIPNP-N--VFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV 148 (544)
Q Consensus 72 ~~~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 148 (544)
.-..+ + ..........+.+.|++++|.+.|-+.+.. +.|. .++.-|........-..+++.+.+.|+ .+.
T Consensus 359 ~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~ 431 (933)
T KOG2114|consen 359 SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANS 431 (933)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccc
Confidence 65421 1 123334455667899999999988887643 3332 345555666667777778888888885 455
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhccCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 044352 149 SVGNALIDMYSKCGLLCSARRVFHGMFERDV-VSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARR 227 (544)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (544)
.....|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+-.+... ....... .+-..
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~ 503 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDL 503 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHh
Confidence 5567899999999999999888887763211 1245566677777777777666554431 2333333 33456
Q ss_pred CChHHHHHHHHHhh
Q 044352 228 GDSNAAFAFFSRMT 241 (544)
Q Consensus 228 ~~~~~a~~~~~~~~ 241 (544)
+++++|++.+..+.
T Consensus 504 ~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 504 HNYEEALRYISSLP 517 (933)
T ss_pred cCHHHHHHHHhcCC
Confidence 88999999988875
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.53 Score=46.71 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 044352 324 ALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEK 403 (544)
Q Consensus 324 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (544)
-.+.-+...|+..+|.++-.+..-|+-..|-.-+.+++..+++++-+++-+... ++.-|..++.+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 334444555666666666666666666666555666666666655444433221 13445555666666666666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044352 404 GLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLL 444 (544)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (544)
|..++-+... .+ ..+.+|.+.|++.+|.++-
T Consensus 763 A~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 763 AKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHH
Confidence 6665544321 11 3445556666666555543
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.13 Score=47.42 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHh---cCChHHHHHHHHHhhhCCCCCCHhHHHHHHH
Q 044352 184 SMISGYCNVSKVDEAVVLFERMKLEG---LEPNQFTYNAIIASYAR---RGDSNAAFAFFSRMTAEGFVPDLVTWNAMIS 257 (544)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (544)
.++-+|....+++...++++.+...- +.-....-....-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666677777777777765431 01111111223334444 6677777777777444444666677776665
Q ss_pred HHHc---------CCCHHHHHHHHHHHHH
Q 044352 258 GFAQ---------SKRENEALKLFKGMLV 277 (544)
Q Consensus 258 ~~~~---------~~~~~~a~~~~~~~~~ 277 (544)
.|-. ....++|+..|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 5432 2235667777776553
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=96.86 E-value=0.076 Score=49.81 Aligned_cols=140 Identities=9% Similarity=0.021 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcC---Ccc---HHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 044352 335 LKDARTLFEITR---IKN---VASWNAMIGCYGKH---------GMVDSSIELFERMLEEGMRANEVTLISVLSACSHGG 399 (544)
Q Consensus 335 ~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (544)
.+.|..+|.+.. .-+ ...|..+..++... ....+|.++.++..+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666777666 333 33444444433321 22345666666666653 456666666666666667
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChh---HHHHHHHHHhhcCChHHHHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV-PMYVTNS---MAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 475 (544)
+++.|...|++.... .|.....|........-.|+.++|.+.+++. ...|... .....+..|+.. ..+.|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 777777777777642 2333455656666666777777777777773 3333322 223333344433 45566665
Q ss_pred HHH
Q 044352 476 GEE 478 (544)
Q Consensus 476 ~~~ 478 (544)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 544
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.79 E-value=0.0061 Score=56.71 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC--CCC-c---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP--NPN-V---FMLNWMVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
.++.++.+|...|++++|+..|++.. .|+ . .+|+.+..+|...|+.++|+..+++.++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554433 122 1 1245555555555555555555555544
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.05 Score=48.12 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=67.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHH
Q 044352 363 HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYAC----VVDMLCRSGRMV 438 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~ 438 (544)
+|+..+|...++++++. .|.|...+...=.+|...|+.+.-...++++... ..++.+.|.. +.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555555555543 3334444444444555555555555555555432 2333322222 222334555555
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC----CchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 439 EAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR----KPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 439 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
+|.+.-++.. .+.|.-+.-+....+.-.|++.++++...+--..-.. -..-|...+..+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 5555555543 2222222233333444455555555544432211100 011233334444455555555555555
Q ss_pred HHhcCCCCCCC
Q 044352 513 MKEKNVQKQPG 523 (544)
Q Consensus 513 ~~~~~~~~~~~ 523 (544)
-+-+...++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 44444444443
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.78 E-value=0.0038 Score=35.11 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
.+..++..+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777777777777777777777764
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.76 E-value=0.59 Score=45.25 Aligned_cols=406 Identities=10% Similarity=0.045 Sum_probs=205.0
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHH-
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASA- 89 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~- 89 (544)
..+..++.---...+.+.+..++..++..-|-....|...+..-.+.|..+.+..+|++.. +.+...|......+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3444444444444455777788888887744444377777777778888888888888765 556666766665443
Q ss_pred hcCCHHHHHHHHHHHHhc-ccc-cCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-----CC
Q 044352 90 FTGNFQEAIGYFSLMREF-IYR-CNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK-----CG 162 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 162 (544)
..|+.+...+.|+..... |.. -....|...|..-..++++.....+++++++.....-...|.......-. ..
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 467777777788877654 211 13334666666667778888888888888765321111111111111111 11
Q ss_pred CHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhh--HHHHHH-------HHHhcCChHHH
Q 044352 163 LLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFT--YNAIIA-------SYARRGDSNAA 233 (544)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~a 233 (544)
..+++.++-...... ......+...+-.+. .+...+.+.+..+ .+.+.. .+-........
T Consensus 206 ~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~--~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 206 SIDELIQLRSDVAER---------SKITHSQEPLEELEI--GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred CHHHHHHHhhhHHhh---------hhcccccChhHHHHH--HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 122222211111100 000001111111111 1111110111100 011111 11111222223
Q ss_pred HHHHHHhhhCC---C----CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 044352 234 FAFFSRMTAEG---F----VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREI 306 (544)
Q Consensus 234 ~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (544)
...|+.-.+.- + .++..+|..-+.--...|+++.+.-+|+...-. +..-...|-..+.-....|+.+.+..+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 33333333221 1 234567888888888889999888888876532 111223333333333344888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--ccHH-HHHHHHHHHHhcCChHHHHH---HHHHHHHcC
Q 044352 307 HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--KNVA-SWNAMIGCYGKHGMVDSSIE---LFERMLEEG 380 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~ 380 (544)
+....+..++..+.+...-....-..|++..|..+++.+.. |+.. .-..-+....+.|+.+.+.. ++......
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 77777665544444433333334456788888888887764 3322 22222333445666666662 22222221
Q ss_pred CCCCHHHHHHHHHH-----HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 381 MRANEVTLISVLSA-----CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 381 ~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
.-+..+...+..- +.-.++.+.|..++.++.+ ..+++...|..++......+
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 1122222222211 2235677888888888876 56677777777766655443
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.027 Score=45.14 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 044352 218 NAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLV-----SGIKPNNVT 286 (544)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 286 (544)
..++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555556667777777766666553 44566666677777777777777776666542 355555443
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.55 Score=43.70 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChh-HHHHHHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYG-VKISKEHYACVVDMLCRSGRMVEAYDLLRQV-PMYVTNS-MAGAFRNGC 463 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~ 463 (544)
+|...+....+..-++.|..+|-++.+. + +.++..++.+++.-+ ..|+...|..+|+-- ..-||.. .....+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666666777889999999999876 5 567777788877755 468899999999863 3334444 445566677
Q ss_pred hhcCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 464 NIHGRRDLAVTMGEEFFEMGL--RKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
...++-..|+.+|+..++.-. .-...|..++.--..-|+...+..+=+++.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 788999999999997776432 2356788888888888998888776666543
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.33 Score=41.17 Aligned_cols=198 Identities=11% Similarity=0.007 Sum_probs=101.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCcc--HHHHHHHHHHHHhcCC
Q 044352 288 TGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKN--VASWNAMIGCYGKHGM 365 (544)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 365 (544)
.....+|....+++.+...+.+..+.. ..+...|. ....++.|.-+.+++.+-+ +..|+.-...|..+|.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 333445555666666666555444211 11111111 1122333444444443321 2234455566677777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHH
Q 044352 366 VDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGV----KISKEHYACVVDMLCRSGRMVEAY 441 (544)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 441 (544)
++.|-..+++.-+. ....+++.|+++|++...-... ..-.+.+....+.|.+..++++|-
T Consensus 107 pdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 107 PDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred cchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 76666665554331 2233445555555554332111 111234455556677777777776
Q ss_pred HHHHhCC-------CCCCh-hHHHHHHHHHhhcCChHHHHHHHHHHHHcC----CCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 442 DLLRQVP-------MYVTN-SMAGAFRNGCNIHGRRDLAVTMGEEFFEMG----LRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 442 ~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
..+.+-. ..+++ ..+...+-.+....++..|++.++.-.++. |++..+...|+.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 6554431 12222 234444556666678888888888866543 66667777777776 56777766554
Q ss_pred H
Q 044352 510 R 510 (544)
Q Consensus 510 ~ 510 (544)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 3
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.65 E-value=0.41 Score=41.90 Aligned_cols=192 Identities=18% Similarity=0.094 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 044352 322 GSALIDMYSKCGSLKDARTLFEITR-----IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLS-AC 395 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~ 395 (544)
.......+...+++..+...+.... ......+......+...+++..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 3333444444444444444443332 1222334444444444445555555555554432111 111111112 44
Q ss_pred hcCCchHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-ChhHHHHHHHHHhhcCChH
Q 044352 396 SHGGLVEKGLEIFRSMKERYGV--KISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYV-TNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~ 470 (544)
...|+++.+...+.+.... .. ......+......+...++.+.|...+.... .+. ....+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5555555555555555321 11 0122222233333445555555555555542 112 2344455555555555666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 471 LAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.|...+..+....|.....+..++..+...|.++++...+++..+
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666555444555555555555556666655555544
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.89 Score=45.64 Aligned_cols=210 Identities=12% Similarity=0.145 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHhcCCc-cHHHHHHHHHHHH----hcCChHHHH
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMYSK---CGSLKDARTLFEITRIK-NVASWNAMIGCYG----KHGMVDSSI 370 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~g~~~~A~ 370 (544)
+.+.|..++....+.|. |+.... +...+.. ..+...|.++|...... ....+..+..+|. ...+...|.
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 44555555555555552 222222 2222222 12455666666555542 2222222222222 123566777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHh----cCCHHHHHHH
Q 044352 371 ELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM---LCR----SGRMVEAYDL 443 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~ 443 (544)
.++.+..+.| .|...-....+..+.. +.++.+.-.+..+.+. +.......-..+... ... ..+...+...
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777777765 3332222222333333 5555555555554443 322111111111111 111 2245566666
Q ss_pred HHhCCCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 044352 444 LRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD---GEWHEAENLRKIMKEK 516 (544)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 516 (544)
+.+.....+......+...|.. ..+++.|...|..+.+.. ......++..+... ..+..|.+++++..+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 6666555566666666655543 246888888888888777 77788888887654 1267888888887664
Q ss_pred C
Q 044352 517 N 517 (544)
Q Consensus 517 ~ 517 (544)
+
T Consensus 539 ~ 539 (552)
T KOG1550|consen 539 D 539 (552)
T ss_pred C
Confidence 3
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.59 E-value=0.0043 Score=34.90 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777778888888888888777775
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.58 E-value=0.042 Score=42.18 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044352 380 GMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLC 432 (544)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (544)
...|+..++.+++.+|+..|++..|.++++...+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999998888888888876443
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.1 Score=40.51 Aligned_cols=117 Identities=11% Similarity=-0.029 Sum_probs=56.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEGMRA---NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR 433 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (544)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.++++.|...+++.++.+...|+. -|...+.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 33445556666666666666554 121 23344555556666666666666666665542222221 12222222221
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 434 SGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
-...+. .+..+. ..=...+....|...|+++++.-|++..+-
T Consensus 95 ~~~~~~---~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 95 YEQDEG---SLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHhhh---HHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 111111 111110 011112336688899999999999876553
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.52 E-value=0.097 Score=43.35 Aligned_cols=152 Identities=19% Similarity=0.120 Sum_probs=93.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCC
Q 044352 359 CYGKHGMVDSSIELFERMLEEGMRAN-EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS-KEHYACVVDMLCRSGR 436 (544)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 436 (544)
.|-..|-+.-|.--|.+... +.|+ +.+|+.+.-.+...|+++.|.+.|+...+- .|. ..+...-+-++.--|+
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCc
Confidence 34455666667666777666 4664 568888888889999999999999998763 333 1222222333445788
Q ss_pred HHHHHHHHHhC----CCCCChhHHHHHHHHHhhcCChHHHH------------------------------HHHHHHHHc
Q 044352 437 MVEAYDLLRQV----PMYVTNSMAGAFRNGCNIHGRRDLAV------------------------------TMGEEFFEM 482 (544)
Q Consensus 437 ~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~------------------------------~~~~~~~~~ 482 (544)
+.-|.+-+.+. +..|-...|.-+.. ..-++.+|. .+++++.+-
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 88887665543 33333334432221 111222221 222333222
Q ss_pred CCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 483 GLRK-------PDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 483 ~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
..++ ..+|..|+.-+...|+.++|..+|+-.+..++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2222 35788999999999999999999998876654
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=1.1 Score=45.23 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=116.7
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCH
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNF 94 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (544)
.+...+..+.+-.-++-|+.+...--..+.....++...+.-+-+.|++++|...|-+.+.--.. ..++.-|....+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRI 413 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHH
Confidence 44555566666666666666554433323333336677777778899999999988776521111 3456667777777
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 95 QEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
..-..+++.+.+.|+. +...-..|+.+|.+.++.++-....+... .|.- ..-....+..+.+.+-.++|.-+-...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 7888889999988875 55666788899999999888776665443 2210 112345566666777777777666555
Q ss_pred cCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 044352 175 FERDVVSWTSMISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
.. +......++ -..+++++|+..+..+.
T Consensus 490 ~~-he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 44 333333333 34678888888887763
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.034 Score=49.07 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=94.5
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHH----HHHHHHHhhcCCh
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-M-YVTNSMA----GAFRNGCNIHGRR 469 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~----~~l~~~~~~~g~~ 469 (544)
...|+..+|-..++++.+ ..|.|...+.-.-.++.-.|+.+.-...++++. . .++.+.+ ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456888999999999988 567787888888888999999998888888874 2 3444322 2334466789999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 470 DLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
++|++..+++++++|.+.-+...++.++...|+..++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999999999999999999999999998765
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.14 Score=43.30 Aligned_cols=204 Identities=12% Similarity=0.048 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG 125 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 125 (544)
.|..-..+|....++++|...+.+.. +.|...|. ....+++|.-+.+++.+. +--...|......|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 45555666666777777777666654 22222222 122344555555555441 1122344555555666
Q ss_pred CCChHHHHHHHHHHHHc--CCCCCh--hHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHH
Q 044352 126 LLDIKKGKQVHAVATQM--GFENDV--SVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVL 201 (544)
Q Consensus 126 ~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (544)
.|.++.|-..++..-+. +..|+. ..|..-+......++...|..+ +......+.+...+++|-..
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------YGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------HHHhhhHhhhhHHhhHHHHH
Confidence 66666555555544332 112221 1122222222222222222222 23334455555555555444
Q ss_pred HHHHHHc----CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCCHhHHHHHHHHHHcCCCHHHHHHHHH
Q 044352 202 FERMKLE----GLEPNQ-FTYNAIIASYARRGDSNAAFAFFSRMTAEG---FVPDLVTWNAMISGFAQSKRENEALKLFK 273 (544)
Q Consensus 202 ~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (544)
+.+-... .--++. ..|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++.
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 4332111 001221 234555555666677777777777743332 233555666677665 4566666555443
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.46 E-value=0.0046 Score=37.32 Aligned_cols=42 Identities=5% Similarity=-0.210 Sum_probs=32.6
Q ss_pred cchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHH
Q 044352 13 VNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVG 55 (544)
Q Consensus 13 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 55 (544)
|.++..+..++...|++++|.++++++++. |.+.. ++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~-a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE-AWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH-HHHHhhh
Confidence 356788888888888888888888888888 66666 7666553
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.35 E-value=0.1 Score=46.73 Aligned_cols=223 Identities=15% Similarity=0.021 Sum_probs=102.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHh
Q 044352 259 FAQSKRENEALKLFKGMLVSG--IKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM--GLHI---DVFTGSALIDMYSK 331 (544)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~ 331 (544)
+.+..+.++|+..+.+.+..- ...--.++..+..+.+..|.++++...--..++. .... -...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887766431 1112234555566666666666654432111110 0011 12233344444444
Q ss_pred cCCHHHHHHHHHhcCC-c-------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHhcC
Q 044352 332 CGSLKDARTLFEITRI-K-------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMR---A--NEVTLISVLSACSHG 398 (544)
Q Consensus 332 ~~~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~ 398 (544)
..++.+++.+-..-.. | ......++..++...+.++++++.|+....--.. | ...++..+...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444443332111 0 1123334555555556666666666665542111 1 123555666666666
Q ss_pred CchHHHHHHHHHHHHH---hCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHH
Q 044352 399 GLVEKGLEIFRSMKER---YGVKISKEHY-----ACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNG 462 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~---~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~ 462 (544)
.++++|.-+..+..+. +++..-..-| ..+.-++...|..-+|.+..++.. ...| ......++..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666555544331 1211111112 222334445555555555554431 1112 2233445555
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 044352 463 CNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~ 481 (544)
|...|+.+.|..-|+.++.
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665543
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.014 Score=47.44 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHh
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISK-----EHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCN 464 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~ 464 (544)
..-+...|++++|..-|..+... +++.. ..|..-..++.+.+.++.|++-..+.. ..|. ..+...-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44567788888888888888774 33332 234445566777888888877776653 2332 233444455777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH
Q 044352 465 IHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
+...+++|++-|+++++.+|....+-...+.+--..+...++
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 777888888888888888887666655555544333333333
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.32 E-value=0.14 Score=46.01 Aligned_cols=224 Identities=9% Similarity=0.084 Sum_probs=141.2
Q ss_pred HHhcCChHHHHHHHHHhhhC--CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhhc
Q 044352 224 YARRGDSNAAFAFFSRMTAE--GFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVS--GIKPN---NVTVTGVLQAGGL 296 (544)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 296 (544)
+....+.++++..+.+...+ +...-..++..+..+..+.|.+++++..--.-+.. ..... -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888776543 11122346667778888888888877654332211 11111 2345555666666
Q ss_pred cCchHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----c----cHHHHHHHHHHHHhc
Q 044352 297 TGSIQIGREIHALVCRM-GLHI---DVFTGSALIDMYSKCGSLKDARTLFEITRI-----K----NVASWNAMIGCYGKH 363 (544)
Q Consensus 297 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~ 363 (544)
..++.+++.+-..-... |..+ .......+..++...+.++++++.|+...+ . ...++-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665554443 2212 223444567778888889999999986653 1 234788899999999
Q ss_pred CChHHHHHHHHHHHHc----CCCCCHH-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHH
Q 044352 364 GMVDSSIELFERMLEE----GMRANEV-----TLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDM 430 (544)
Q Consensus 364 g~~~~A~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 430 (544)
.++++|.-+..+..+. ++..-.. ...-+.-++...|.+-.|.+..++..+..-..-| ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999888776552 2111111 2233445677788888888888876553222223 3345567788
Q ss_pred HHhcCCHHHHHHHHHhC
Q 044352 431 LCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~ 447 (544)
|...|+.+.|+.-|+.+
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 99999999998888764
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.26 E-value=1.1 Score=42.50 Aligned_cols=64 Identities=20% Similarity=0.076 Sum_probs=40.2
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcC-CChHHHHHHhccCC
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGC-GDVNSARLVFDKIP 74 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 74 (544)
+.++..+...+.-|-+.+.+.+...+|..++.. |.++. +|..-+.-.... -.++.|+.+|.+..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d-LWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD-LWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch-hHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 335556677777676666677777777777777 54555 555444433333 33777777777655
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.23 E-value=0.87 Score=41.11 Aligned_cols=19 Identities=16% Similarity=-0.111 Sum_probs=13.3
Q ss_pred HHhhcCChHHHHHHHHHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~ 480 (544)
.+.+.+++++|..+|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888877554
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.13 E-value=0.62 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHH
Q 044352 287 VTGVLQAGGLTGSIQIGREIHALVCR 312 (544)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (544)
+..++....-.||.+.+.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34455555556666666666666544
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.06 E-value=0.84 Score=39.39 Aligned_cols=57 Identities=21% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
.++.-|.+.|.+..|..-++++++.-|+.+ .++..+..+|.+.|..++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 455678899999999999999999876544 456667788999999999988655443
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.43 Score=45.92 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHHhcCCHHHHHHHHH--HHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 044352 87 ASAFTGNFQEAIGYFS--LMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLL 164 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~--~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (544)
...-.++++++.++.+ ++.. .+ .......++..+.+.|..+.|+++- .|+.+ -.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFV---------TDPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHH---HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CChHH---HhHHHHhcCCH
Confidence 3455677777766664 2221 12 2444667777777788888877763 33322 23445678888
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 165 CSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 165 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
+.|.++.++.. +...|..|.......|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777664 55688888888888888888888887754 24556667777788777777776666554
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 044352 245 FVPDLVTWNAMISGFAQSKRENEALKLFKG 274 (544)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (544)
-++....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244455555666777777776654
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.79 E-value=0.021 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
++..|+.+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999865
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.78 E-value=0.019 Score=32.19 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
+|..++..|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777888888888877777774
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.77 E-value=0.36 Score=45.66 Aligned_cols=60 Identities=10% Similarity=-0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR--KPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
+-..++.++.+.|+.++|++.++++++..|. +-.+...|+.+|...+.+.++..++.+.-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445666777888888888888888877664 44567778888888888888888877753
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.77 E-value=1.2 Score=42.38 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCChh--HHHHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPM--YVTNS--MAGAFRN 461 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~ 461 (544)
.+-..+..++.+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+-.. -|... .|...+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3334566677789999999999999987533222445778899999999999999999988751 12222 3333222
Q ss_pred HHhhcCC---------------hHHHHHHHHHHHHcCCCCc
Q 044352 462 GCNIHGR---------------RDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 462 ~~~~~g~---------------~~~A~~~~~~~~~~~p~~~ 487 (544)
-+...++ -..|.+.+.++++.||--|
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 2222222 2346788999999887544
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.76 E-value=0.098 Score=45.19 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=69.8
Q ss_pred HHHHHhhcc--CCChhhHHHHHHHHhc-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 167 ARRVFHGMF--ERDVVSWTSMISGYCN-----VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 167 A~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
.+..|..+. ++|-.+|.+.+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 344555554 4677788877776654 35667777778889999999999999988877644221
Q ss_pred hhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 044352 240 MTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGS 299 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (544)
.|... +....-.|-+ +-+=+++++++|...|+.||..+-..++.++.+.+-
T Consensus 123 ------iP~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ------IPQNV-FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------ccHHH-HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12111 1111111111 122356667777777777777777777777666554
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.74 E-value=1.2 Score=38.54 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=83.5
Q ss_pred HHhcCChHHHHHHHHHhhhCC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----
Q 044352 224 YARRGDSNAAFAFFSRMTAEG--FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLT---- 297 (544)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 297 (544)
-.+.|++++|.+.|+.+..+. -+-...+--.++.++.+.++++.|+..+++.+..........|...+.+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345677777777777776552 11123444555666777777777777777776543222222333333332211
Q ss_pred ---CchH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHH
Q 044352 298 ---GSIQ---IGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIE 371 (544)
Q Consensus 298 ---~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 371 (544)
.|.. .|..-|+.+++.= +.+..+ ..|...+..+...=...=..+.+-|.+.|.+..|..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya--------------~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY-PNSRYA--------------PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC-CCCcch--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1111 2222222222221 111110 011110000000000011234556777888888888
Q ss_pred HHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 372 LFERMLEEGMRAN---EVTLISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 372 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
-+++|++. .+-+ ...+-.+..+|...|-.++|...-+-+..
T Consensus 189 R~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 189 RFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888775 2222 23455566677777777777766555543
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.72 E-value=0.054 Score=40.70 Aligned_cols=90 Identities=18% Similarity=0.088 Sum_probs=65.3
Q ss_pred HHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCH---HHHHHHHHHhhCCC
Q 044352 54 VGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNK---FTFSIVLKACVGLL 127 (544)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~ 127 (544)
+-+++..|+.+.|++.|.... |.++..||.-..++--+|+.++|++-+++..+..-..+. ..|..-...|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445667888888888888765 677888888888888888888888888887765322222 23444445667778
Q ss_pred ChHHHHHHHHHHHHcC
Q 044352 128 DIKKGKQVHAVATQMG 143 (544)
Q Consensus 128 ~~~~a~~~~~~~~~~~ 143 (544)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888887776
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.61 E-value=2.6 Score=44.63 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKG 404 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (544)
.+..-.++|-+.+|..++..-.+.-...|.+....+...+.+++|.-.|+..-+ ....+.+|...|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333344556666666655444444445666666677777888888777776543 23456677888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 044352 405 LEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEF 479 (544)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (544)
..+..++.. +-..-..+-..|+..+...+++-+|-++.......|... ...+++...+++|.......
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhc
Confidence 888777643 111112223566777778888888888877765333222 12344444566665554443
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=0.96 Score=35.80 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=56.2
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHH
Q 044352 119 VLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEA 198 (544)
Q Consensus 119 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (544)
++..+...+........++.+...+ +.+...++.++..|++.+ ..+....+.. ..+......+++.|.+.+-++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444444445555555555555444 244445555555555432 2233333331 12223333455555555555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHH
Q 044352 199 VVLFERMKLEGLEPNQFTYNAIIASYARR-GDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFA 260 (544)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 260 (544)
.-++.++.. +...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 555554421 11222223333 566666665554 224455665555544
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=1 Score=35.70 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcC
Q 044352 219 AIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQS 262 (544)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 262 (544)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455555556666666666665554 34555666666666554
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.43 E-value=0.28 Score=45.81 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=90.9
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHH
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (544)
...|++-.|-+-+.....+ .+.++.............|+++.+...+.... ......+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456666666555444443 23333333333444566788888887776653 2334456666777777788888888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEecC---eeecccccc
Q 044352 474 TMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKRN---EFVEKEVQN 540 (544)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 540 (544)
...+-++.-.-+++.+...-+......|-++++...|+++..-+ ++....|+...+ ||-.|.--+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~~~~ 445 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGNAFS 445 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcchHH
Confidence 88888877776677776666666667788888888888887544 444455666555 777776443
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=3.4 Score=41.65 Aligned_cols=102 Identities=5% Similarity=-0.101 Sum_probs=59.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccc---CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 84 MVMASAFTGNFQEAIGYFSLMREFIYRC---NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
-+..+.+.+.+++|+++-+.... ..| -.......+..+...|+++.|....-.|.. .+...|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 46667778888888887766543 233 223345556666677777777777766653 345555555555666
Q ss_pred CCCHHHHHHHHhhccC-CChhhHHHHHHHHhc
Q 044352 161 CGLLCSARRVFHGMFE-RDVVSWTSMISGYCN 191 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~ 191 (544)
.++......++-.-.. .+...|..++..+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 5555444333322222 345566666666555
No 279
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.38 E-value=0.24 Score=38.08 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCHhHHHHHHH
Q 044352 210 LEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE-GFVPDLVTWNAMIS 257 (544)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 257 (544)
..|+..+..+++.+|+..+++..|+++.+...+. +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455666666666666666666666666655433 44445555555554
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.3 Score=39.98 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHH-----
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTL--ISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHY----- 424 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 424 (544)
.|..++.... .+.+ +.....+++....-.....++ ..+...+...+++++|...++..... + ....+
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t-~De~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---T-KDENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---c-hhHHHHHHHH
Confidence 4555554433 2233 444555555553211111222 22334456677777777776665532 2 22222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVPMYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
..|.+.....|.+|+|...++....+.- ......-+.++...|+.++|+..|+++++.++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 2344555666777777777766542211 11222333456667777777777777776653
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.30 E-value=0.23 Score=43.00 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=77.6
Q ss_pred HHHHhccCC--CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCC-----------
Q 044352 66 ARLVFDKIP--NPNVFMLNWMVMASAF-----TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLL----------- 127 (544)
Q Consensus 66 A~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------- 127 (544)
.+..|..++ +.|..+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344566666 6777888888877754 3567777788899999999999999999998875432
Q ss_pred -----ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 044352 128 -----DIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLL 164 (544)
Q Consensus 128 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (544)
.-+-+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2245788999999999999999999999998887653
No 282
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.27 E-value=0.38 Score=46.27 Aligned_cols=156 Identities=13% Similarity=0.016 Sum_probs=86.4
Q ss_pred HHhhccchhhhhhHHhH--HHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHH
Q 044352 21 GKCMKSKALRQGKQVHA--LLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEA 97 (544)
Q Consensus 21 ~~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 97 (544)
....-+|+++++.++.+ +++.. | .. ..+.+++.+.+.|-.+.|+++... -..-.....+.|+.+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~-~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KD-QGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HH-HHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hh-HHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHH
Confidence 34446688888766665 33332 3 23 457788888888888888887654 13334455667777777
Q ss_pred HHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCC
Q 044352 98 IGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFER 177 (544)
Q Consensus 98 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 177 (544)
.++.++. .+...|..|.....+.|+++-|...+.+... +..|+-.|...|+.+.-.++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6654333 2555777777777777777777777765432 345556666777776666666554432
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 178 DVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.. ++....++...|+.++..+++.+
T Consensus 403 ~~--~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD--INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 33444444555677766666654
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.8 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=22.4
Q ss_pred hccchhhhhhHHhHHHhhc-ccc--hhhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044352 24 MKSKALRQGKQVHALLCTN-DLN--IFSLKSKLVGVYAGCGDVNSARLVFDKIP 74 (544)
Q Consensus 24 ~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (544)
++.|..++|..-|..+.+. ..+ .. +...........|+...|...|+++.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3444555555555555554 111 11 22333334444555555555555543
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.16 E-value=2 Score=37.41 Aligned_cols=196 Identities=15% Similarity=0.036 Sum_probs=121.8
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--ccH-HHHHHHHH-HH
Q 044352 286 TVTGVLQAGGLTGSIQIGREIHALVCRM-GLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--KNV-ASWNAMIG-CY 360 (544)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~ 360 (544)
........+...+++..+...+...... ........+......+...+++..+...+..... ++. ........ .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3344444444444455444444444331 1122344444555555556666666666665553 111 22222222 67
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcC
Q 044352 361 GKHGMVDSSIELFERMLEEGMRA----NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKI-SKEHYACVVDMLCRSG 435 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 435 (544)
...|+++.|...+.+.... .| ....+......+...++.+.+...+...... .+. ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 7888888888888888552 33 2333444444466778889999998888763 333 4677888888888888
Q ss_pred CHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 436 RMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 436 ~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
+++.|...+.... ..|+ ...+......+...+..+++...+++.++..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999998888764 2333 344555555555777899999999999999986
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.11 E-value=0.04 Score=31.39 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
++..++..|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999996654
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.06 E-value=0.15 Score=45.00 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
++..++..+...|+++.+...+++.++.+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555556666666666666666666666666666666666666666666666666643
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.96 E-value=0.028 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=18.9
Q ss_pred hHHHhhc-ccchhhHHHHHHHHhhcCCChHHHH
Q 044352 36 HALLCTN-DLNIFSLKSKLVGVYAGCGDVNSAR 67 (544)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 67 (544)
|+++++. |.+.. +++.++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~-a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE-AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH-HHHHHHHHHHHCcCHHhhc
Confidence 4455555 55555 6666666666666666664
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.95 E-value=0.054 Score=30.23 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++..++.++...|++++|++.+++.++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998754
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.91 E-value=0.72 Score=36.75 Aligned_cols=59 Identities=12% Similarity=-0.101 Sum_probs=36.9
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP 74 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (544)
.+..++..-.+.++.+.+..+++-+.-. |.... .-..-+..+...|++.+|+.+|+.+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE-LDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3444455555666777777777666666 33333 55555666667777777777777766
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.78 E-value=0.079 Score=47.01 Aligned_cols=97 Identities=6% Similarity=-0.113 Sum_probs=69.5
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCC
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGR 468 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 468 (544)
-..-|.+.|.+++|+.+|..... -.+.++..+..-..+|.+..++..|..-.+.+. ...-..+|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35678889999999999988764 223377778888889999999888877666553 12222334434444445688
Q ss_pred hHHHHHHHHHHHHcCCCCchh
Q 044352 469 RDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p~~~~~ 489 (544)
..+|.+-++.++++.|++...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 999999999999999985543
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.67 E-value=1.9 Score=34.89 Aligned_cols=131 Identities=7% Similarity=0.039 Sum_probs=68.2
Q ss_pred HHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 044352 234 FAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (544)
.++++.+.+.+++|+...+..++..+.+.|++... .+++..++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566667778888888888888888888886654 444455666666555444432222 222233222222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044352 314 GLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFE 374 (544)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 374 (544)
= ...+..+++.+...|++-+|.++......-+......++.+-.+.+|...-..+++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 01234455566666666666666655433222222334444444444443333333
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=11 Score=43.38 Aligned_cols=310 Identities=10% Similarity=0.022 Sum_probs=156.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhhccC----CC--hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 044352 153 ALIDMYSKCGLLCSARRVFHGMFE----RD--VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYAR 226 (544)
Q Consensus 153 ~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (544)
.+..+=.+++.+.+|...++.-.. .+ ..-+..+...|...+++|.+.-+...-.. .|+ . ..-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHHHh
Confidence 344555677888888888887311 11 22344455588888888888877764111 222 2 234445567
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhhccCchHHHHH
Q 044352 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVT-GVLQAGGLTGSIQIGRE 305 (544)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 305 (544)
.|++..|...|+.+.+.+ ++...+++-++......|.++.++-..+...... .+....++ .-+.+-=+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 789999999999988774 4446778878877777888877776555544321 22222222 12222244555555555
Q ss_pred HHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHH-----HHHHHHHhcC-C-------c--cHHHHHHHHHHHHhcCChHH
Q 044352 306 IHALVCRMGLHIDVFTGSA--LIDMYSKCGSLK-----DARTLFEITR-I-------K--NVASWNAMIGCYGKHGMVDS 368 (544)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~-----~A~~~~~~~~-~-------~--~~~~~~~l~~~~~~~g~~~~ 368 (544)
.+. .. +...|.. ++....+..+-+ +.++..+... . . -...|..++..+.-..--..
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 443 11 1111111 222222211111 0111111100 0 0 01234444333322111111
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCH
Q 044352 369 SIELFERMLEEGMRANE------VTLISVLSACSHGGLVEKGLEIFRSMKERYGVK-----ISKEHYACVVDMLCRSGRM 437 (544)
Q Consensus 369 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 437 (544)
... .. ++.++. .-|..-+..-....+..+-+--+++..-..... .-..+|....+.....|++
T Consensus 1613 ~~~----l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1613 IEE----LK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHH----hh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 100 00 112211 112112211111111222111122211110111 2346777788888889999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 438 VEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 438 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
+.|...+-++....-+..+.-.+...++.|+...|+.++++.++++
T Consensus 1687 q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9998887666534455666677788899999999999999999766
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.57 E-value=0.072 Score=29.41 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=15.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
.++.++...|++++|...|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555553
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.54 E-value=0.56 Score=38.53 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=50.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044352 358 GCYGKHGMVDSSIELFERMLEEGMRANE-----VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLC 432 (544)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (544)
.-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++. + +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-N-PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-C-chhHHHHHHHHHHHH
Confidence 3456677777777777777765 33322 23444444566677777777766666542 1 112223333345666
Q ss_pred hcCCHHHHHHHHHhCC
Q 044352 433 RSGRMVEAYDLLRQVP 448 (544)
Q Consensus 433 ~~g~~~~A~~~~~~~~ 448 (544)
+..++++|++-|+++.
T Consensus 180 k~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL 195 (271)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 6777777777776653
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.53 E-value=0.075 Score=29.69 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.+|..+|.++...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999998754
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=3 Score=35.47 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhH-------H-HHHHHHHhh
Q 044352 399 GLVEKGLEIFRSMKERYGVK----ISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSM-------A-GAFRNGCNI 465 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-------~-~~l~~~~~~ 465 (544)
.+++.|+..|+..-+-+... .....+..+...-...+++.+|+++|+++. ...+... + ...+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 34555555555543322111 112233344444556777888888877753 1111111 1 111112223
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh
Q 044352 466 HGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
..|.-.+...+++..+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 367777777777877888754443
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.22 E-value=1.9 Score=32.92 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC
Q 044352 249 LVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH 316 (544)
Q Consensus 249 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (544)
.......+..+..+|+-|+-.+++..+.+.+ .+++..+..+..+|.+.|+..++.+++.++.+.|.+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444556677777888888888887776533 677777777888888888888888888888777743
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.18 E-value=0.41 Score=38.08 Aligned_cols=83 Identities=18% Similarity=0.035 Sum_probs=55.1
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHHhCC-CCCChh-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 422 EHYACVVDM---LCRSGRMVEAYDLLRQVP-MYVTNS-MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 422 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.+...|+.. -.+.++.+++..++..+. ..|... .-..-+..+...|++.+|+.+++++.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344444443 346778888888887763 334333 223333456778888888888888877778777777777777
Q ss_pred HHhcCChH
Q 044352 497 CAADGEWH 504 (544)
Q Consensus 497 ~~~~g~~~ 504 (544)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77777655
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=3.3 Score=35.22 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=34.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKPDG-------FVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+.--...+++.+|+.+|++.....-+|+.. +..-+.++.-.++.-.+...+++..+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 333457789999999999998866555532 33333344444555555555555443
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=0.75 Score=37.75 Aligned_cols=126 Identities=7% Similarity=0.022 Sum_probs=68.6
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhh--HHHHHHHHhhcCCChHHHHHHhccCC-CCCchhHH-----HH
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFS--LKSKLVGVYAGCGDVNSARLVFDKIP-NPNVFMLN-----WM 84 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~-----~l 84 (544)
..|..++.+.. .+.. ......+++... +.+.+. +...++..+..+|++++|...++... .+.-..+. .|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34555555442 3333 444455555555 444431 23334556667777777777777554 22222222 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 044352 85 VMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMG 143 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 143 (544)
.+.....|.+++|+.+++.....+. .......-...+...|+-++|..-|+.....+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455667777777777776655322 12223333456667777777777777777664
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=2.6 Score=33.91 Aligned_cols=119 Identities=10% Similarity=0.067 Sum_probs=80.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHh
Q 044352 360 YGKHGMVDSSIELFERMLEEGMRANEV-TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACV-----VDMLCR 433 (544)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 433 (544)
+.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. .+.+.....+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 356778889999999988877544333 2223344566788999999999998754 2233233222 234567
Q ss_pred cCCHHHHHHHHHhCCCCCC---hhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 434 SGRMVEAYDLLRQVPMYVT---NSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
.|-+++.....+.+..+.+ ...-..|.-+-.+.|++..|.++|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888888777652222 34556677777889999999999998876
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.02 E-value=2 Score=35.60 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHH--HH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANE--VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYA--CV 427 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 427 (544)
.+..+...|.+.|+.+.|++.|.++.+....+.. ..+..++......+++..+...+.++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5666677777777777777777777765433332 3455666667777777777777776654311111111111 11
Q ss_pred --HHHHHhcCCHHHHHHHHHhCC
Q 044352 428 --VDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 428 --~~~~~~~g~~~~A~~~~~~~~ 448 (544)
+-.+...+++.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 112345678888877776654
No 303
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.25 Score=41.84 Aligned_cols=63 Identities=10% Similarity=-0.090 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.+.++..++...|++-++++...+.+...|.|..+|..-+.+....=+.++|..-|..+++..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344555667778888888888888888888888888888888888888888888888777654
No 304
>PRK09687 putative lyase; Provisional
Probab=93.87 E-value=4.8 Score=36.31 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=26.7
Q ss_pred cchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCH----HHHHHHHHHH
Q 044352 44 LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNF----QEAIGYFSLM 104 (544)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~ 104 (544)
++.. +....+..+...|..+-...+..-...+|+..-...+.++...|+. .++...+..+
T Consensus 35 ~d~~-vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSL-KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHH-HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3444 4444555555555433222222222244444444445555555542 3455555544
No 305
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.87 E-value=8.8 Score=39.34 Aligned_cols=116 Identities=9% Similarity=-0.030 Sum_probs=71.8
Q ss_pred ccCchHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--cHHHHHHHHHHHHhcCChHHHH
Q 044352 296 LTGSIQIGREIHALVCRMG-LHID--VFTGSALIDMYSKCGSLKDARTLFEITRIK--NVASWNAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 370 (544)
...+.+.|...+....... ..+. ..+...+.......+...+|...+...... +......-+..-...++++.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 3456688888888764443 2222 122333333333332366777777765432 4444455555556888999888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 044352 371 ELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMK 412 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (544)
..+..|... ..-...-.--+..++...|+.++|..+|+.+.
T Consensus 333 ~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888887553 23344445556777777899999999999874
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.84 E-value=6.4 Score=37.72 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKC 332 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (544)
|......++..+.......-...+..++...| .+...+..++++|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 34444444444544444444444444444443 2333444444444444
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.81 E-value=0.28 Score=30.78 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 456 AGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
...++-++.+.|++++|++..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4456678899999999999999999999988776543
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.68 E-value=0.18 Score=40.68 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044352 401 VEKGLEIFRSMKERYGVKISKEHYACVVDMLC 432 (544)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (544)
++.|.+.++..... -|.|...++.-+.++.
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALL 36 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALL 36 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHH
Confidence 34455555554332 2445555555554444
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.57 E-value=0.53 Score=36.76 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=41.9
Q ss_pred hcCCHHHHHHHHHhCC-CCCChh-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChH
Q 044352 433 RSGRMVEAYDLLRQVP-MYVTNS-MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 433 ~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 504 (544)
..++.+++..+++.+. ..|... .-..-+..+...|++++|..++++..+-.+..|..-..++.++.-.|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4667777777776653 222222 22222335566777777777777776666655666666666666666554
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.53 E-value=0.17 Score=29.82 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
+++.++..|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555555544
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.45 E-value=1.8 Score=33.97 Aligned_cols=59 Identities=12% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCCC
Q 044352 16 LDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN 75 (544)
Q Consensus 16 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (544)
+..++..-...+++.++..+++-+.-. |.... .-..-+..+...|++++|+++|.++..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e-~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE-LDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc-cchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 334444455677888888887777776 33333 556666677788888888888888873
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.44 E-value=0.26 Score=43.95 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
..-|.+.|.+++|+..|...+.. .| |+.++..-..+|.+...+..|..-....... ...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999998884 55 8899999999999999998888776666542 0111223444444444566
Q ss_pred CHHHHHHHHHhCC-CCCC
Q 044352 436 RMVEAYDLLRQVP-MYVT 452 (544)
Q Consensus 436 ~~~~A~~~~~~~~-~~~~ 452 (544)
+..+|.+-++... ..|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 7777776666553 4444
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.43 E-value=7 Score=36.79 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-hCCCCchhHH
Q 044352 349 NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA---NEVTLISVLSACSHGGLVEKGLEIFRSMKER-YGVKISKEHY 424 (544)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 424 (544)
...+|..++..+.+.|.++.|...+.++...+... .+.....-+......|+..+|+..++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888888888999999999888887743211 3344455566667778888888888877762 1111111111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHhCCCCCChhHHHHHHHHHhh------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 425 ACVVDMLCRSGRMVEAYDL-LRQVPMYVTNSMAGAFRNGCNI------HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
..+...+.. ..+..... ........-...+..++.-... .++.+++...|+++.+..|....+|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000001122223333333 38899999999999999999999999888876
Q ss_pred Hhc
Q 044352 498 AAD 500 (544)
Q Consensus 498 ~~~ 500 (544)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 655
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.27 E-value=20 Score=41.62 Aligned_cols=314 Identities=15% Similarity=0.080 Sum_probs=170.0
Q ss_pred HHHHHHhccCChhHHHHHHHHH----HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHH
Q 044352 184 SMISGYCNVSKVDEAVVLFERM----KLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGF 259 (544)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (544)
++..+-.+.+.+..|...++.- ++. .....-|..+...|...+++|...-+...-.. .|+ .+. -+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHH
Confidence 4445566677888888888773 211 11223344455588888888887776653111 232 222 34455
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 260 AQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
...|+++.|...|+.+.+.+ ++...++..++......+.++......+-......+.....++.-+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 67888999999999888654 33366677777777777777766665554433321112222333344445667777666
Q ss_pred HHHHhcCCccHHHHHHH--HHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH----
Q 044352 340 TLFEITRIKNVASWNAM--IGCYGKHGMVD--SSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSM---- 411 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~l--~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 411 (544)
.... ..+...|... +....+...-+ .-.+.++.+.+.-+.| +.+|...|.+..+.++.-++
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHH
Confidence 6655 3333334333 33333322222 1122333333321111 11222222222222221111
Q ss_pred ------HHHhCCCCch------hHHHHHHHHHHhcCCHHHHHHHHHhC------C---CCCChhHHHHHHHHHhhcCChH
Q 044352 412 ------KERYGVKISK------EHYACVVDMLCRSGRMVEAYDLLRQV------P---MYVTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 412 ------~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~------~---~~~~~~~~~~l~~~~~~~g~~~ 470 (544)
....++.++. ..|..-+..-....+..+-+--+++. . ...-...|...++..+..|+++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111222222 22222222111111122222112211 1 1223568889999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 471 LAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
.|...+-.+.+..+ +.++...+..+...|+...|+.++++.++.+..
T Consensus 1688 ~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99999999988884 688999999999999999999999999976543
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.24 E-value=4.5 Score=34.02 Aligned_cols=191 Identities=19% Similarity=0.089 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVG 125 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 125 (544)
.+...+..|-..|-+.-|+.-|.... |.-+..||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY 145 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYY 145 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eee
Confidence 33334444555555566666555543 55567788888888889999999999998888543322222333232 334
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHH-HHhhccCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 126 LLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARR-VFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.|++..|.+-+...-+.. +.|+. ...-+-.--..-++.+|.. +.++....|..-|...+-.+.- |+. ....++++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D-~~DPf-R~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~ 221 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDD-PNDPF-RSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMER 221 (297)
T ss_pred cCchHhhHHHHHHHHhcC-CCChH-HHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHH
Confidence 678888887777766653 22221 1111222223445666654 4455566666666555444332 211 11233333
Q ss_pred HHHcCCC------CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 205 MKLEGLE------PNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 205 ~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
+...... .=..||-.+...+...|+.++|..+|+-....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3322111 113577888999999999999999999887543
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.91 E-value=0.61 Score=41.25 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cccccCHHHHHHH
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMRE-----FIYRCNKFTFSIV 119 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 119 (544)
++..++..+..+|+++.+.+.++++. +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55556666666666666666666655 44555666666666666666666666666544 3455554444333
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.81 E-value=0.18 Score=26.13 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 044352 488 DGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
.+...++.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677778888888888877765
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.79 E-value=0.17 Score=27.79 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++..++.++.+.|++++|++.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998754
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.52 E-value=3 Score=32.01 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCchhHHHHHHHHHHhcCCHH---HHHHHHHhCC--CCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 418 KISKEHYACVVDMLCRSGRMV---EAYDLLRQVP--MYVT--NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
.++..+-..+..++.+..+.+ +.+.+++.+. .+|+ .....-++-++.+.+++++++++.+..++.+|+|+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 556666667777777665443 4556666553 2222 33445566688899999999999999999999766543
No 320
>PRK10941 hypothetical protein; Provisional
Probab=92.44 E-value=0.83 Score=40.54 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 456 AGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
..++-.+|.+.++++.|....+.++.+.|++|.-+.-.|.+|.+.|.+..|..=++..++...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 345556788889999999999999999999888888888999999999999888888877653
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.57 Score=39.67 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHhCC-CCCCh-hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044352 434 SGRMVEAYDLLRQVP-MYVTN-SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
..+++.|+..|.+.. ..|.+ ..|..-+-.+.+..+++.+..--++++++.|+.......++..+.....+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 344555555554432 34444 3334444455556666666666666666666666666666666666666666666666
Q ss_pred HH
Q 044352 512 IM 513 (544)
Q Consensus 512 ~~ 513 (544)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 65
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.43 E-value=0.33 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.+|..++.+|...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998864
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.42 E-value=0.57 Score=37.94 Aligned_cols=43 Identities=9% Similarity=-0.082 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 468 RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.+++|...|+++.+.+|.|......|-.+ ++|-++..++.+.+
T Consensus 95 ~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHH
Confidence 47788888999999999776665555332 24555555554443
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.38 E-value=0.28 Score=26.39 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 456 AGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
+..++..+...|+++.|...++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444455555555555555555555544
No 325
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.14 E-value=5.1 Score=37.65 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFEMGLR-KPDGFVMLSNICA-ADGEWHEAENLRKIMKE 515 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 515 (544)
...+..+.+.|-+..|.++.+-++.++|. ||......++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 33445677899999999999999999998 8888888877765 88999988888887665
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.00 E-value=0.038 Score=44.10 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=63.1
Q ss_pred HHHHHhhccchhhhhhHHhHHHhhc--ccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHH
Q 044352 18 CLLGKCMKSKALRQGKQVHALLCTN--DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQ 95 (544)
Q Consensus 18 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (544)
.++..+.+.+.+......++.+.+. ..+.. .++.++..|++.++.+...+.++.... .-...++..+.+.|-++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 3566677789999999999999976 44466 889999999999888999998885433 33355677777778888
Q ss_pred HHHHHHHHHHh
Q 044352 96 EAIGYFSLMRE 106 (544)
Q Consensus 96 ~A~~~~~~~~~ 106 (544)
+|.-++.++..
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 88777776543
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.93 E-value=0.35 Score=28.40 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.++..++.+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46889999999999999999999998753
No 328
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.88 E-value=5.9 Score=37.68 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=65.9
Q ss_pred HhcCCchHHHHHHHHHHH--HHhCCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-------------------
Q 044352 395 CSHGGLVEKGLEIFRSMK--ERYGVKISK-----EHYACVVDMLCRSGRMVEAYDLLRQVP------------------- 448 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------- 448 (544)
+.-.|++..|.+++...- +..|...++ ..++.++-.+.+.|.+.-+..+|.++.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344567777766654331 111111111 123445555555666555555554331
Q ss_pred -CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 449 -MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 449 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
....-...+..+-.|...|+.-.|.+.|.++.+..-.||..|..++.+|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1122334455666888999999999999999999988999999999998754
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.73 E-value=0.011 Score=47.20 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=50.2
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHH
Q 044352 119 VLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEA 198 (544)
Q Consensus 119 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (544)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++.... .-...++..+.+.|-++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777777777777777665556677777888888887777777777663322 2233444555555555555
Q ss_pred HHHHHH
Q 044352 199 VVLFER 204 (544)
Q Consensus 199 ~~~~~~ 204 (544)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 554444
No 330
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.68 E-value=0.53 Score=45.32 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=70.4
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKIS--KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
..|+...|...+..+.- ..|- ......+...+.+.|...+|-.++.+.. ....+.++..+++++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 46778888887776653 2332 2234456667777777778877776642 345667778888888888889999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
++.|+.+++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999888888777655544
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.44 E-value=23 Score=38.07 Aligned_cols=113 Identities=9% Similarity=0.078 Sum_probs=64.8
Q ss_pred CCCHHHHHHHH----HHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHH---
Q 044352 281 KPNNVTVTGVL----QAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASW--- 353 (544)
Q Consensus 281 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 353 (544)
.|+...+.... ..+.....+++|.-.|...-+. ...+.+|..+|+|.+|..+-.++...-....
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 34544444333 3344455566666555543221 2346677778888888888777765433322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 044352 354 NAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRS 410 (544)
Q Consensus 354 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 410 (544)
..|+.-+...+++-+|-++..+.... | .-.+..+++...|++|..+...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 56777777788888888877776552 1 2223344555556666555443
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.32 E-value=0.83 Score=32.67 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCChH
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR--KPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 504 (544)
.|......++..+...|++++|++.+-++++.+|. +..+-..++.++.-.|.-+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34455566666666666666666666666666543 3445555666665555543
No 333
>PRK12798 chemotaxis protein; Reviewed
Probab=91.05 E-value=14 Score=34.81 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHhcCCc----cHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCchH
Q 044352 332 CGSLKDARTLFEITRIK----NVASWNAMIGCY-GKHGMVDSSIELFERMLEEGMRAN----EVTLISVLSACSHGGLVE 402 (544)
Q Consensus 332 ~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 402 (544)
.|+.+++.+.+..+... ....+-.|+.+- ....++..|+++|+...-. .|. ...+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58888888888777642 334555565543 3466888899988887663 443 234445555667888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHH
Q 044352 403 KGLEIFRSMKERYGVKISKEHYAC-VVDMLCRSG---RMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEE 478 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (544)
++..+-.+...+|...|=...|.. +...+.+.+ ..+.-..++..|........|..+...-...|+.+-|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888888887777666555444333 333333333 3344455556665333456777788888888999999999999
Q ss_pred HHHcCCCCchhHHHHHHH-----HHhcCChHHHHHHHHHHHhc
Q 044352 479 FFEMGLRKPDGFVMLSNI-----CAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 479 ~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 516 (544)
+..+... ...-...+.. -.-..+.++|.+.+..+-..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 8887632 2222222222 33345667777666665443
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.89 E-value=3.2 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccC--HHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCN--KFTFSIVLKACVGLLDIKKGKQVHAVATQ 141 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 141 (544)
.+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666665433332 23455556666666666666666555544
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.80 E-value=11 Score=33.34 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 456 AGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+......|...|.+.+|.++-++++.++|-+...+-.+...|...|+--.|.+.|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556788999999999999999999999999999999999999999999988888753
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.77 E-value=11 Score=32.99 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh----CCCCchh
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEE---GM--RANEVTLISVLSACSHGGLVEKGLEIFRSMKERY----GVKISKE 422 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 422 (544)
+...++..+.+.|++++.++.|.+++.. .+ .-+....+.++.......+.+-..++++...... +-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3444555555566666655555555431 01 1123344555544444444444444433322211 1111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--------------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC--CC
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP--------------MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL--RK 486 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~ 486 (544)
+-..+...|...|.+..-.++++++. ...-...|..-+..|...++..+-..+|++++.+.. ++
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 22345555555555555555555431 001112344444556666666666667776666542 23
Q ss_pred chhHHH----HHHHHHhcCChHHHHH
Q 044352 487 PDGFVM----LSNICAADGEWHEAEN 508 (544)
Q Consensus 487 ~~~~~~----l~~~~~~~g~~~~A~~ 508 (544)
|.+.-. =+..+.+.|+|++|..
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHh
Confidence 332221 1334556667766654
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.67 E-value=15 Score=34.54 Aligned_cols=54 Identities=6% Similarity=-0.073 Sum_probs=30.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCR 312 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (544)
...+.-+.|+++...+........ .++...+..+... ..++++++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677888888855554443311 2233333333322 77788877777666544
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.61 E-value=2.9 Score=34.80 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhCCCC---CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC----CCchhHHHHHHHHHhcCChHHHH
Q 044352 436 RMVEAYDLLRQVPMY---VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL----RKPDGFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 436 ~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~ 507 (544)
.-++|.+.|-++... .++.....++ .|....|.++++.++-+++++.+ .||.++..|+.++.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345677766666422 2444555554 45557899999999999999763 36889999999999999999884
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.28 E-value=2.5 Score=30.19 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
+.-++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466777777777788999999999999999999999999999988765332 4445655543
No 340
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.26 E-value=14 Score=33.63 Aligned_cols=77 Identities=13% Similarity=-0.027 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-------------
Q 044352 439 EAYDLLRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG------------- 501 (544)
Q Consensus 439 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 501 (544)
.|...+.++...-+......+...|.. ..+.++|..+|+++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455666555433345555555544432 3477788888888877776 55555565 555444
Q ss_pred --ChHHHHHHHHHHHhcCC
Q 044352 502 --EWHEAENLRKIMKEKNV 518 (544)
Q Consensus 502 --~~~~A~~~~~~~~~~~~ 518 (544)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66667777766665554
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.14 E-value=5.5 Score=28.71 Aligned_cols=97 Identities=10% Similarity=-0.078 Sum_probs=66.0
Q ss_pred HHHHHhhccchhhhhhHHhHHHhhcc-cchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHH
Q 044352 18 CLLGKCMKSKALRQGKQVHALLCTND-LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQE 96 (544)
Q Consensus 18 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (544)
.++.+-.-....++|..+.+.+...+ .... +....+..+...|+|++|..+.+....||...|-.+.. .+.|--+.
T Consensus 10 E~AL~gTG~HcHqEA~tIAdwL~~~~~~~E~-v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~ 86 (115)
T TIGR02508 10 EIALIGTGHHCHQEANTIADWLHLKGESEEA-VQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSA 86 (115)
T ss_pred HHHHHHccchHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHH
Confidence 33333344457788888887777663 3334 55555667788899999999999998888888877765 45676677
Q ss_pred HHHHHHHHHhcccccCHHHHHH
Q 044352 97 AIGYFSLMREFIYRCNKFTFSI 118 (544)
Q Consensus 97 A~~~~~~~~~~~~~p~~~~~~~ 118 (544)
+..-+.+|...| .|....|..
T Consensus 87 l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 87 LESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHHHHhCC-CHHHHHHHH
Confidence 777777777654 344444443
No 342
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.05 E-value=0.24 Score=44.20 Aligned_cols=119 Identities=12% Similarity=0.012 Sum_probs=64.8
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh-HHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNS-MAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A 472 (544)
....|.++.|++.|...++ --++....|..-..++.+.++...|++-+.... +.||.. .|..-..+-+..|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 3455667777777776665 234455555555666666666666666665543 333322 233333344556677777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
...++.+.+++-+ ..+-..+-.+.-+.+..++-...+++..+.
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 7777777666642 233333444444555555555555554443
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=4.8 Score=39.35 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=46.2
Q ss_pred hCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 160 KCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 160 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555544332 2334455555555555555555555554432 23344444555555444444444
Q ss_pred hhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 044352 240 MTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKG 274 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (544)
..+.| ..| ....+|...|+++++.+++..
T Consensus 718 ~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 44443 211 122344455566655555543
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.96 E-value=2.8 Score=30.28 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 368 SSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++.++.+.+. ....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 56666777777778899999999999999999999999999999886443 3336666654
No 345
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=20 Score=34.40 Aligned_cols=396 Identities=10% Similarity=-0.003 Sum_probs=209.3
Q ss_pred hHHHHHHHhhccc--hhhhhhHHhHHHhhc-ccchhh--HHHHHHHHhh-cCCChHHHHHHhccCC----------CCCc
Q 044352 15 YLDCLLGKCMKSK--ALRQGKQVHALLCTN-DLNIFS--LKSKLVGVYA-GCGDVNSARLVFDKIP----------NPNV 78 (544)
Q Consensus 15 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~--~~~~l~~~~~-~~g~~~~A~~~~~~~~----------~~~~ 78 (544)
++..++..+..+| ++..+++-++.+... +|+... ....++..+. ...+++.|...+++.. ..--
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 4555666677777 788888888888877 444321 4445555544 4578888888777643 1122
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHHHHHhcccc-c--CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 044352 79 FMLNWMVMASAFTG-NFQEAIGYFSLMREFIYR-C--NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNAL 154 (544)
Q Consensus 79 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 154 (544)
.++..+.+.+.... .+..+..++++.++..-. | .-.....+++.+.-..++..|.+++.--.... .+-...|..+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~ 167 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHH
Confidence 45667777777665 788888888888764211 1 11223445566677788888888754322221 1222222222
Q ss_pred HH------HHHhCCCHHHHHHHHhhc---cC---CChh------hH--HHHHHHHhccCChhHHHHHHHHHHHc---CC-
Q 044352 155 ID------MYSKCGLLCSARRVFHGM---FE---RDVV------SW--TSMISGYCNVSKVDEAVVLFERMKLE---GL- 210 (544)
Q Consensus 155 ~~------~~~~~~~~~~A~~~~~~~---~~---~~~~------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 210 (544)
+. ......+..++..+.... .+ +|.. .| ..-+..|...|+...+...++++... +.
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 21 122233444454444433 22 2221 12 22234456678888777777776432 11
Q ss_pred -----------CCCHhhHHHHHH----HH---------HhcCChHHHHHHHHHh-------hhCC-CCCCHh-----HHH
Q 044352 211 -----------EPNQFTYNAIIA----SY---------ARRGDSNAAFAFFSRM-------TAEG-FVPDLV-----TWN 253 (544)
Q Consensus 211 -----------~~~~~~~~~l~~----~~---------~~~~~~~~a~~~~~~~-------~~~~-~~~~~~-----~~~ 253 (544)
.|....+..+.. ++ .-.|-+++|.++-+++ ++.. ..|-.. +..
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 122222211111 00 1123344454444443 3221 111111 122
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHH-HhhccCchHHHHHHHHHHHHcCCCCCHHHH--
Q 044352 254 AMISGFAQSKRENEALKLFKGMLVSG-IKPNN-------VTVTGVLQ-AGGLTGSIQIGREIHALVCRMGLHIDVFTG-- 322 (544)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 322 (544)
.++.+-.-.|++.+|++-+.+|.+.- -.|.+ .....++. -++..+.++.|..-|....+.--..+..++
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 23333445899999999999987632 12331 11222333 345667788888888777665434444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCccHHHHH----------HHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHH
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRIKNVASWN----------AMIGCYGKHGMVDSSIELFERMLEEGMRA-----NEVT 387 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 387 (544)
..+...|.+.|+.+.-.++++.+..+|..++. .-.-.....+++.+|...+.+-++-.-.- ..-.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 34566788888888888888887765432211 11112235778888888887766531111 1112
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~ 411 (544)
+..+...+...|+..++.+...-.
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchH
Confidence 223333445566666666555433
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=7.9 Score=37.98 Aligned_cols=149 Identities=14% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 044352 161 CGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRM 240 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (544)
.|+++.|..++..++++. -+.++..+...|-.++|+++ .+|+.. -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchhh---hhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh
Confidence 466666666555554322 23334444455555555543 233221 122334567777777765553
Q ss_pred hhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHH
Q 044352 241 TAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVF 320 (544)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (544)
.+..-|..|.++....+++..|.+.|..... +..|+-.+...|+-+....+-....+.|..
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 3556677777777788888877777766542 334455555566665555555555554421
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEIT 345 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~ 345 (544)
+....+|...|+++++.+++..-
T Consensus 725 --N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 --NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --chHHHHHHHcCCHHHHHHHHHhc
Confidence 22223455567777776666543
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.56 E-value=25 Score=35.51 Aligned_cols=276 Identities=15% Similarity=0.094 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHH--H-HHhcCChHHHHHHHHHhhh-------CCCCCCHhHHHHHHHHHHcCC-
Q 044352 195 VDEAVVLFERMKLEGLEPNQFTYNAIIA--S-YARRGDSNAAFAFFSRMTA-------EGFVPDLVTWNAMISGFAQSK- 263 (544)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 263 (544)
...+.++++.....|. .........+. + +....|.+.|+.+|+.+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888888776652 22222222222 2 3356789999999998876 44 3335566777777643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 044352 264 ----RENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL-TGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSK----CGS 334 (544)
Q Consensus 264 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 334 (544)
+...|+.+|......| .|+.......+..... ..+...|.++|....+.|.. ..+..+..+|.. ..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 6678999999988887 5665555444444443 35678999999999998833 333334433332 347
Q ss_pred HHHHHHHHHhcCCccH-HHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH---hc----CCchHHH
Q 044352 335 LKDARTLFEITRIKNV-ASWNAMIGCYGK-HGMVDSSIELFERMLEEGMRANEVTLISVL-SAC---SH----GGLVEKG 404 (544)
Q Consensus 335 ~~~A~~~~~~~~~~~~-~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~~~~a 404 (544)
...|..++.+.-..+. .+...+...+.. .++++.+...+..+.+.|..- ..+-...+ ... .. ..+...+
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchhHH
Confidence 8889999988776653 323332222221 277888887777777765322 22111111 111 11 2245566
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhCCCCCChhHHHHHHHHHh----hcCChHHHHHHH
Q 044352 405 LEIFRSMKERYGVKISKEHYACVVDMLCRS----GRMVEAYDLLRQVPMYVTNSMAGAFRNGCN----IHGRRDLAVTMG 476 (544)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~ 476 (544)
...+.+... .-+......+...|... .++..|...+.....+. .....++...+- ... ...|.+++
T Consensus 459 ~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 459 FSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 666666644 33555666666665443 35788888888776444 444444443332 233 78999999
Q ss_pred HHHHHcCCC
Q 044352 477 EEFFEMGLR 485 (544)
Q Consensus 477 ~~~~~~~p~ 485 (544)
+++.+.+..
T Consensus 533 ~~~~~~~~~ 541 (552)
T KOG1550|consen 533 DQASEEDSR 541 (552)
T ss_pred HHHHhcCch
Confidence 999887754
No 348
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.16 E-value=17 Score=33.04 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHhhhCCC---CCCHhHHHHHHHHHHcCCCH
Q 044352 195 VDEAVVLFERMKLEGLEPNQFTYNAIIASYAR--RG----DSNAAFAFFSRMTAEGF---VPDLVTWNAMISGFAQSKRE 265 (544)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 265 (544)
+++...+++.|.+.|...+..+|-+....... .. ...+|..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888888877766553333332 22 34568888888887621 1233334444332 33333
Q ss_pred ----HHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCc--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 266 ----NEALKLFKGMLVSGIKPNN--VTVTGVLQAGGLTGS--IQIGREIHALVCRMGLHIDVFTGSALID 327 (544)
Q Consensus 266 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (544)
+.+..+|+.+.+.|...+. .....++..+....+ ...+..+++.+.+.|+++....|..++-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4566777777776755533 233334433333222 3466777777888877766666555443
No 349
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.02 E-value=11 Score=30.63 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccC--ChhHHHHHHHHHHHcCCCCC
Q 044352 136 HAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVS--KVDEAVVLFERMKLEGLEPN 213 (544)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 213 (544)
+..+.+.+++++...+..++..+.+.|++.....++.--.-+|.......+-.+.... -..-+++++.++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~------- 89 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG------- 89 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-------
Confidence 3444455566666666666666666666665555554433333222222221111110 0222333333332
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHh
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRM 240 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (544)
..+..++..+...|++-+|+++.+..
T Consensus 90 -~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 -TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 12344555566666666666666554
No 350
>PRK09687 putative lyase; Provisional
Probab=88.84 E-value=18 Score=32.73 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=12.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGML 276 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (544)
+..+-...+.++.+.++ ..++..+-.++
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L 168 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLL 168 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHh
Confidence 33444444455544444 33444444444
No 351
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.84 E-value=18 Score=32.90 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHhhC--CC----ChHHHHHHHHHHHHcC
Q 044352 95 QEAIGYFSLMREFIYRCNKFTFSIVLKACVG--LL----DIKKGKQVHAVATQMG 143 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~ 143 (544)
.+.+.+++.|.+.|+.-+..+|......... .. ...++..+++.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4556778888888888777776654433322 22 2445777777777764
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.43 E-value=1.1 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 491 VMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
..|+.+|...|+.+.|++++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357778888888888888888877544
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.26 E-value=23 Score=33.39 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCchHHHHHHHHHHHH
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACS-HGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 413 (544)
.+..+.+.|-+..|+++.+-+......-|+......|..|+ +.++++.-+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35566777888888888877777543335555555555543 66777777777776543
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.24 E-value=33 Score=35.18 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCC
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGL 126 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 126 (544)
..-.+|-.+.|.|++++|.++....... .......+...+..+...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445677788999999999999665543 455566778888888665
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.07 E-value=3.1 Score=35.61 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCChH-------HHHHHHHHHHHcC--CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 455 MAGAFRNGCNIHGRRD-------LAVTMGEEFFEMG--LRK----PDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
.+..+++.|...|+.+ .|...|+++.+.. |.. ......+|.+..+.|++++|.+.|.+++..+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3445555666666643 4555555555543 222 345666888888999999999999998876543
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.06 E-value=1.3 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 467 GRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 467 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
|+.+.|..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877654
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.33 E-value=1.2 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.++..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 56788999999999999999999988764
No 358
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=38 Score=34.71 Aligned_cols=22 Identities=14% Similarity=0.316 Sum_probs=12.1
Q ss_pred HHHHHhccCChhHHHHHHHHHH
Q 044352 185 MISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
|+..|...+++..|+.++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555555566666655555443
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.11 E-value=1.6 Score=29.82 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=36.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHH---HHHHHHhcCChHHHHHHH
Q 044352 465 IHGRRDLAVTMGEEFFEMGLRKPDGFVM---LSNICAADGEWHEAENLR 510 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~ 510 (544)
...+.++|+..|+.+++..++.+.-|.. ++.+|+..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999988776665555 456788899999988864
No 360
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.02 E-value=23 Score=32.01 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHH
Q 044352 329 YSKCGSLKDARTLFE 343 (544)
Q Consensus 329 ~~~~~~~~~A~~~~~ 343 (544)
+.+.++++.|.++|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 455677777777776
No 361
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.97 E-value=38 Score=34.51 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=111.9
Q ss_pred HHHHHHHHhhhCCCCCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHhhccC
Q 044352 232 AAFAFFSRMTAEGFVPD---LVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNV----------TVTGVLQAGGLTG 298 (544)
Q Consensus 232 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~ 298 (544)
+-..++.+|..+--.|+ ..+...++-.|....+++..+++.+.+... ||.. .|...+.--.+.|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 33455566655422332 334455666677777788777777777642 3211 1222333333456
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLE 378 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 378 (544)
|.+.|....-.+.+..-+..+..| |-+|+ +++.|. +...|...+..+.|.+.|++.-+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~-------Cl~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMY-------CLCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcee-------eeech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc
Confidence 666666665555544322222222 22222 111111 11123445566778888888776
Q ss_pred cCCCCCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHH
Q 044352 379 EGMRANEVTLISVLSACSHGGL-VEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAG 457 (544)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (544)
+.|+...=..+...+...|. ++...++ +. +-..|...+.+.|..+.-.++|+-.-
T Consensus 316 --veP~~~sGIN~atLL~aaG~~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV~~--------- 371 (1226)
T KOG4279|consen 316 --VEPLEYSGINLATLLRAAGEHFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDVAT--------- 371 (1226)
T ss_pred --cCchhhccccHHHHHHHhhhhccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhHHH---------
Confidence 46665432222222222332 2222211 11 11123445678888888877776431
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.+.+-.-.+++.+|+...+.+.++.|+....-..+..+
T Consensus 372 -y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 372 -YFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred -hhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 22344457789999999999999998766655555444
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.92 E-value=31 Score=33.42 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 044352 75 NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNAL 154 (544)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 154 (544)
+.|.....+++..+..+....-...+..+|... .-+...|..+++.|... ..++-..+|+++.+..+ .|...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 445667788889999888889999999999984 45777889999999887 66788899999888753 445555566
Q ss_pred HHHHHhCCCHHHHHHHHhhccC------CC---hhhHHHHHHHHhccCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFE------RD---VVSWTSMISGYCNVSKVDEAVVLFERMKLE-GLEPNQFTYNAIIASY 224 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 224 (544)
+..|-+ ++...+...|.++.. .+ ...|.-+... -..+.+..+.+..++... |...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 888888888877632 11 1245544432 135566666666666533 4344455566666778
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHH
Q 044352 225 ARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISG 258 (544)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (544)
....++.+|++++..+.+.+ ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 88899999999999887665 4455544444443
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.49 E-value=23 Score=31.51 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 044352 252 WNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALV 310 (544)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (544)
++.....|..+|.+.+|.++.+..+..+ +.+...+..+++.+...||--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566777777888877777777554 556666777777777777766666555554
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.28 E-value=43 Score=34.44 Aligned_cols=172 Identities=8% Similarity=0.026 Sum_probs=83.9
Q ss_pred hhHHhHHHhhc---ccc--hhhHHHHHHHHhh-cCCChHHHHHHhccCC----CCCch-----hHHHHHHHHHhcCCHHH
Q 044352 32 GKQVHALLCTN---DLN--IFSLKSKLVGVYA-GCGDVNSARLVFDKIP----NPNVF-----MLNWMVMASAFTGNFQE 96 (544)
Q Consensus 32 A~~~~~~~~~~---~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~-----~~~~l~~~~~~~~~~~~ 96 (544)
|+.-++-+++. +|. .. ++..++..+. ...+++.|+..+++.. +++.. +-..++..+.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~-~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEAR-VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45555555533 222 23 5666777666 5677888888777654 11111 1223445555554444
Q ss_pred HHHHHHHHHhcccc----cCHHHHHHH-HHHhhCCCChHHHHHHHHHHHHcC---CCCChhHHHHHHHHHH--hCCCHHH
Q 044352 97 AIGYFSLMREFIYR----CNKFTFSIV-LKACVGLLDIKKGKQVHAVATQMG---FENDVSVGNALIDMYS--KCGLLCS 166 (544)
Q Consensus 97 A~~~~~~~~~~~~~----p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 166 (544)
|...+++.++.--. +-...|..+ +..+...+++..|.+.++.+.... ..+...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 77777776553111 112222322 222223367777777777666542 1233333444444433 3444555
Q ss_pred HHHHHhhccC-------------CChhhHHHHHHHH--hccCChhHHHHHHHHH
Q 044352 167 ARRVFHGMFE-------------RDVVSWTSMISGY--CNVSKVDEAVVLFERM 205 (544)
Q Consensus 167 A~~~~~~~~~-------------~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 205 (544)
+.+.++.+.. +-..+|..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555544411 1233455555443 3456655665555544
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.02 E-value=48 Score=34.67 Aligned_cols=85 Identities=11% Similarity=-0.020 Sum_probs=45.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhCCCHHHHHHHHhhccC--------CChhhHHHHHH
Q 044352 124 VGLLDIKKGKQVHAVATQMGFENDVS-------VGNALI-DMYSKCGLLCSARRVFHGMFE--------RDVVSWTSMIS 187 (544)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~ 187 (544)
....++.+|..++.++...=.+|+.. .++.+- .+....|+++.|.++.+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35566777777776665542121111 122221 122345677777766655532 23445566666
Q ss_pred HHhccCChhHHHHHHHHHHHc
Q 044352 188 GYCNVSKVDEAVVLFERMKLE 208 (544)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~ 208 (544)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 666677777777766655433
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.81 E-value=45 Score=34.23 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=31.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---c
Q 044352 257 SGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG-LHIDVFTGSALIDMYSK---C 332 (544)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 332 (544)
..+.-.|+++.|++++.. ..+...+...+...+.-+.-.+-.+... ..+.... -.+..--+..++..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444556777777777765 1122344444444444433322222111 1111110 00111334455555554 3
Q ss_pred CCHHHHHHHHHhcC
Q 044352 333 GSLKDARTLFEITR 346 (544)
Q Consensus 333 ~~~~~A~~~~~~~~ 346 (544)
.+...|.+++--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 45666666665443
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.72 E-value=13 Score=31.20 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhcc-------CCChhhHHHHHHHHhccCChhHH
Q 044352 130 KKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMF-------ERDVVSWTSMISGYCNVSKVDEA 198 (544)
Q Consensus 130 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a 198 (544)
+.|.+.|-.+...+.-.++.....|...|. ..+.+++..++.... ..|+..+..|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444545554444444444444444444 344455555544442 13455555566666555555554
No 368
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.67 E-value=2.4 Score=37.51 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.8
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
..+.|+.++|..+|+.++.+.|.++.++..+|......++.-+|-++|-+++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 4467788888888888888888888888888887777777777777775544
No 369
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=10 Score=34.03 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC-CCh-----hhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhh
Q 044352 143 GFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE-RDV-----VSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFT 216 (544)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (544)
|.+....+...++..-....+++.+...+-++.. ++. .+-.++++.+ -.-++++++.++..=...|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3344444555555555555667777666655533 111 0111222222 23456677777776677777777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044352 217 YNAIIASYARRGDSNAAFAFFSRMTAE 243 (544)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (544)
++.+|+.+.+.+++.+|..+.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777766665543
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.48 E-value=47 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=32.2
Q ss_pred cCChHHHHHHHHHHHHcC---CCCchhHH------HHHHHHHhcCChHHHHHHHHHHH
Q 044352 466 HGRRDLAVTMGEEFFEMG---LRKPDGFV------MLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~---p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
.|+..+.......+..+- |+...... .+...+...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 688888777777666544 33233322 34455778899999998877654
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.23 E-value=25 Score=30.79 Aligned_cols=242 Identities=14% Similarity=0.110 Sum_probs=117.9
Q ss_pred ChHHHHHHHHHhhhCCCCCCH---hHHHHHHHHHHcCCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHhhccCch
Q 044352 229 DSNAAFAFFSRMTAEGFVPDL---VTWNAMISGFAQSKRENEALKLFKGMLV---SGI--KPNNVTVTGVLQAGGLTGSI 300 (544)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~ 300 (544)
++++|+.-|++..+..-.... .....++..+.+.+++++....|.+++. ..+ ..+....+.++.-.....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555554433111111 1223345555666666666666665542 111 11233344444444444444
Q ss_pred HHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc------------c---HHHHHHHHHHH
Q 044352 301 QIGREIHALVCRM----G-LHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK------------N---VASWNAMIGCY 360 (544)
Q Consensus 301 ~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~---~~~~~~l~~~~ 360 (544)
+....+++.-.+. . -..--.+-..+...|...+++.....+++++... + ...|..-|+.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4433333322111 0 0000112234566666777777777766655421 1 23577778888
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHh---CCCCchhH--HHHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEG-MRANEVTLISVLSAC-----SHGGLVEKGLEIFRSMKERY---GVKISKEH--YACVVD 429 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~~~--~~~l~~ 429 (544)
....+-..-..+|++.+.-. .-|.+.... +++-| .+.|++++|-.-|-++-+.+ |.+....+ |..+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 334444433 33333 46788888775444443332 22222222 444555
Q ss_pred HHHhcCC----HHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHH
Q 044352 430 MLCRSGR----MVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMG 476 (544)
Q Consensus 430 ~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (544)
.+.+.|- -++|.- ....|...+...++.+|.. ++..+-.+++
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 5665551 111110 1145556677778777764 4554444433
No 372
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.76 E-value=0.98 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=13.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHhc
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFD 71 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~ 71 (544)
+...++..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455556666666666665554
No 373
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=4.4 Score=36.49 Aligned_cols=91 Identities=9% Similarity=-0.047 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP----MYVT--NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.|..=+.-|.+..++..|...|.+-. ..|+ ...|.+-+.+-...|++..|+.-..+++.++|.+..++..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444566777888888888887642 2232 34556666666677899999999999999999988888888888
Q ss_pred HHhcCChHHHHHHHHHH
Q 044352 497 CAADGEWHEAENLRKIM 513 (544)
Q Consensus 497 ~~~~g~~~~A~~~~~~~ 513 (544)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877666655443
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.71 E-value=13 Score=26.94 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 044352 128 DIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKL 207 (544)
Q Consensus 128 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (544)
..++|..+-+.+...+- ....+.-.-+..+...|++++|..+.+...-||...|.++... +.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 34566666555554431 1222222233446677888888888888877888887766553 55666666666666666
Q ss_pred cCCCCCHhhHH
Q 044352 208 EGLEPNQFTYN 218 (544)
Q Consensus 208 ~~~~~~~~~~~ 218 (544)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.39 E-value=21 Score=33.11 Aligned_cols=137 Identities=5% Similarity=-0.126 Sum_probs=87.8
Q ss_pred CCCCCCcchHHHHHHHhhcc------------chhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccC
Q 044352 7 PINNLSVNYLDCLLGKCMKS------------KALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKI 73 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (544)
..+|.+..++..++..--.. .-.+.-+.+++++++. |.+.. ++..++..+.+..+.+...+.++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~-L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER-LLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566667777776542222 1245567889999998 76677 9999999999999999989999988
Q ss_pred C---CCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHhc------cc----cc----CHH---HHHHHHHHhhCCCChH
Q 044352 74 P---NPNVFMLNWMVMASAF---TGNFQEAIGYFSLMREF------IY----RC----NKF---TFSIVLKACVGLLDIK 130 (544)
Q Consensus 74 ~---~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~------~~----~p----~~~---~~~~ll~~~~~~~~~~ 130 (544)
. +.+...|...+..... .-.++....+|.+.++. +. .+ +.. .+..+...+...|..+
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 7 4466778888876654 33566777777765532 11 00 011 1222222334667777
Q ss_pred HHHHHHHHHHHcCC
Q 044352 131 KGKQVHAVATQMGF 144 (544)
Q Consensus 131 ~a~~~~~~~~~~~~ 144 (544)
.|..+++.+.+.++
T Consensus 172 ~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 172 RAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777776654
No 376
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.33 E-value=12 Score=33.58 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHH
Q 044352 178 DVVSWTSMISGYCNVSKVDEAVVLFERMKLEG---LEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNA 254 (544)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (544)
+..+...++..-....+++.+...+-+++... ..|+...+ .+++.+.+ -+.++++.++..=.+-|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 34445555555555677888888887776431 12222222 23333333 467788888888888899999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSG 279 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (544)
+++.+.+.+++.+|..+...|..+.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999888887654
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.24 E-value=5.3 Score=30.73 Aligned_cols=68 Identities=7% Similarity=-0.027 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHHc-CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 450 YVTNSMAGAFRNGCNIHG---RRDLAVTMGEEFFEM-GLR-KPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++..+-..+++++.+.. +..+.+.+++..++. .|. .......|+-.+++.|+|++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 556667777888887654 577889999999973 343 34567778889999999999999999888654
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.09 E-value=42 Score=32.47 Aligned_cols=241 Identities=9% Similarity=-0.084 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC------chHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCH-HH
Q 044352 267 EALKLFKGMLVSGIKPNNVTVTGVLQAGGLTG------SIQIGREIHALVCRMG-L-HIDVFTGSALIDMYSKCGSL-KD 337 (544)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~-~~ 337 (544)
....+|+...+. -|+...+...|..|...- .......+++...+.+ . +.....|..+...++..... .-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 444566655532 344445555555443322 2333344444444332 1 22344555555555554443 33
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhcC-ChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hHHH--HHHHHHHH
Q 044352 338 ARTLFEITRIKNVASWNAMIGCYGKHG-MVDSS-IELFERMLEEGMRANEVTLISVLSACSHGGL-VEKG--LEIFRSMK 412 (544)
Q Consensus 338 A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~ 412 (544)
|..+.......+...|..-+....+.. +++-- .+.+......-..+-...+.... .++ .+.. ..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 444444555566666665555554321 22211 11222222211111112222222 222 2211 12333333
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCch
Q 044352 413 ERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCN--IHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
.. +.+.....-+.+++-+.+.|-..+|..++..+. -+++...+..++..-. ..-+...++++|+.+..-...++.
T Consensus 453 s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 453 SV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred Hh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 32 322233344567777888889999999998864 3556666666665322 223488889999999876667888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.|..+...-...|+.+.+-.++-++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888888877788999888888777665
No 379
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.88 E-value=8.1 Score=27.71 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVAT 140 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 140 (544)
++.+-++.+...++.|++......+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666666666555
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.66 E-value=5.5 Score=33.56 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQV-PMYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
.+..+..+.+.+..++|+...+.- ..+| +...-..++..++-.|++++|..-++-+-++.|....
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 445566778888899988877653 3334 4556677778888999999999999988888886543
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.60 E-value=4.3 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCChHHHHHH--HHHHHHcCC
Q 044352 456 AGAFRNGCNIHGRRDLAVTM--GEEFFEMGL 484 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p 484 (544)
+..++..+...|++++|+.+ |+-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 33444455555556666655 334444444
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.45 E-value=2.2 Score=36.11 Aligned_cols=59 Identities=22% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 431 LCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
..+.|+.+.|.+++.++. .+.+...|..+...-.+.|+++.|.+.|++.++++|++...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 344556666666666553 23344555555555556666666666666666666654433
No 383
>PRK10941 hypothetical protein; Provisional
Probab=83.25 E-value=10 Score=33.81 Aligned_cols=68 Identities=10% Similarity=-0.113 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
+.+-.+|.+.++++.|..+.+.+. .+.++.-+.--+-.|.+.|.+..|..-++..++..|++|.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 344556777788888887777763 34455566666677888888888888888888888877765443
No 384
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=26 Score=34.46 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=27.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEGMRAN------------EVTLISVLSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (544)
....-+++|...|.-.... ..|+ ..++..+...|...|+.+.|..++++.
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3455666676666665543 1222 224455555666667766666666554
No 385
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.01 E-value=10 Score=27.50 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 142 (544)
+...-++.+...++.|++......+++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445555555556666666666666666666666666666666544
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.97 E-value=4.6 Score=29.18 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=39.0
Q ss_pred HhhcCChHHHHHHHHHHHHcCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLR----K-----PDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
..+.|++.+|.+.+.+....... . ..+...++.++...|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44678888887777777664321 1 234566788888999999999999988753
No 387
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.34 E-value=1.2 Score=41.97 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=67.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCC
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEH-YACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGR 468 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~ 468 (544)
+..+...+.++.|..++.++++. .|+... |..-..++.+.+++..|..=+..+. ..|. ...|..-+.++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 45566778888888888888763 554433 3333467778888888876665553 3333 2344444556777788
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 469 RDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
+.+|+..|+....+.|+++.+...+-.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 888888888888888887776655533
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.21 E-value=63 Score=34.27 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=19.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHH
Q 044352 181 SWTSMISGYCNVSKVDEAVVLFERMKL 207 (544)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (544)
-|..|+..|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466777777777777777777777764
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.11 E-value=19 Score=26.43 Aligned_cols=97 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred HHHHHHhhccchhhhhhHHhHHHhhccc-chhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHH
Q 044352 17 DCLLGKCMKSKALRQGKQVHALLCTNDL-NIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQ 95 (544)
Q Consensus 17 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (544)
..++.+-......++|..+.+.+...+. ... +....+..+...|+|++|+..=.....||...|-.+.. .+.|--+
T Consensus 10 AElAL~atG~HcH~EA~tIa~wL~~~~~~~E~-v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~ 86 (116)
T PF09477_consen 10 AELALMATGHHCHQEANTIADWLEQEGEMEEV-VALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLAS 86 (116)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHH-HHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHH
Confidence 3444444455678889988888887733 333 55556667788999999955555555777777766544 5778888
Q ss_pred HHHHHHHHHHhcccccCHHHHH
Q 044352 96 EAIGYFSLMREFIYRCNKFTFS 117 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~ 117 (544)
++...+.++...| .|....|.
T Consensus 87 ~~e~~l~rla~~g-~~~~q~Fa 107 (116)
T PF09477_consen 87 ALESRLTRLASSG-SPELQAFA 107 (116)
T ss_dssp HHHHHHHHHCT-S-SHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHH
Confidence 8888888777654 33444443
No 390
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.72 E-value=1.3 Score=39.75 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=47.2
Q ss_pred ccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHH
Q 044352 25 KSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGY 100 (544)
Q Consensus 25 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 100 (544)
..|.++.|++.+..+++. ++... .+....+++.+.++...|++-++... +.+...|-.-..+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~-l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAI-LYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhh-hcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 455666666666666666 44444 55666666666666666665555443 22222344444444445666666666
Q ss_pred HHHHHhcccccC
Q 044352 101 FSLMREFIYRCN 112 (544)
Q Consensus 101 ~~~~~~~~~~p~ 112 (544)
|+...+.++.+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666655554443
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.78 E-value=3.5 Score=25.90 Aligned_cols=33 Identities=15% Similarity=-0.075 Sum_probs=25.5
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc-ccchh
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIF 47 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 47 (544)
.++.++-++.+.|+++.|....+.+++. |.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4667788889999999999999999999 44443
No 392
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.75 E-value=19 Score=25.78 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.+++.++.+|+|......++..+...|++++|++.+-.+++.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555554443
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.72 E-value=55 Score=30.80 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPN------PNVFMLNWMVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
++.-++..|..+|+++.|++.|.++.+ .....|-.+|..-.-.|+|......-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 677788888888999999888888652 2334455666666667777777666666654
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=69 Score=31.74 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=86.9
Q ss_pred ccchhhhhhHHhHHHhhc-c------------cchhhHHHHHHHHhhcCCChHHHHHHhccCC-------C---------
Q 044352 25 KSKALRQGKQVHALLCTN-D------------LNIFSLKSKLVGVYAGCGDVNSARLVFDKIP-------N--------- 75 (544)
Q Consensus 25 ~~g~~~~A~~~~~~~~~~-~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--------- 75 (544)
.++.+++|...|.-++.. + -... ....+..++..+|+.+.|..+.++.. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvd-sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVD-SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchh-HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 445566666666666655 2 2334 56667777888888887777666532 1
Q ss_pred --------CCchhHHH---HHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcC
Q 044352 76 --------PNVFMLNW---MVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKAC-VGLLDIKKGKQVHAVATQMG 143 (544)
Q Consensus 76 --------~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~ 143 (544)
-|..-|-+ .+..+.+.|.+..|.++.+-+.+....-|+.....+|..| .+..+++-.+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 11122222 2445567788888888888777754444566666666665 36667777777766664432
Q ss_pred ---CCCChhHHHHHHHHHHhCCC---HHHHHHHHhhccC
Q 044352 144 ---FENDVSVGNALIDMYSKCGL---LCSARRVFHGMFE 176 (544)
Q Consensus 144 ---~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~ 176 (544)
.-|+...-.+++..|.+... -..|...+.....
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23444444455566655544 2334444444433
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.37 E-value=49 Score=31.55 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=8.5
Q ss_pred hcCChHHHHHHHHHHHHc
Q 044352 362 KHGMVDSSIELFERMLEE 379 (544)
Q Consensus 362 ~~g~~~~A~~~~~~~~~~ 379 (544)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 444444444444444443
No 396
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.18 E-value=64 Score=31.23 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC---c---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCCH---
Q 044352 328 MYSKCGSLKDARTLFEITRI---K---------NVASWNAMIGCYGKHGMVDSSIELFERMLE-------EGMRANE--- 385 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--- 385 (544)
.+.-.|++.+|.+++-.... + .-..||.+...+.+.|.+..+..+|.+.+. .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34445666666666543221 1 111345555555556666665555555543 3433321
Q ss_pred --------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044352 386 --------VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLC 432 (544)
Q Consensus 386 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (544)
.+|+. .-.+...|++-.|.+.|.+.... +..++..|..+.+++.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 12222 22455667777777777776653 4455566666666654
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.91 E-value=4.2 Score=38.57 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=79.1
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCC---chhHHHHHHHHHhc
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPN---VFMLNWMVMASAFT 91 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 91 (544)
.+-.-+......++++.|+.++.++++..|+-...+.....++.+.+++..|+.-+.++++.+ ...|..-..++.+.
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 444556777788999999999999999955544266666688889999999999888887444 23444455566667
Q ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHh
Q 044352 92 GNFQEAIGYFSLMREFIYRCNKFTFSIVLKAC 123 (544)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 123 (544)
+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 778888888888776 678877776666554
No 398
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=34 Score=29.56 Aligned_cols=85 Identities=6% Similarity=-0.049 Sum_probs=50.0
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHhhcCChHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISK-EHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT-NSMAGAFRNGCNIHGRRDL 471 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~ 471 (544)
|.....++.|+..|.+... +.|+. .-|..-+.++.+..+++.+..--.+.. ..|+ ......+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3344566666666665553 34554 344555666666777766655444432 2333 3455566666777777888
Q ss_pred HHHHHHHHHHc
Q 044352 472 AVTMGEEFFEM 482 (544)
Q Consensus 472 A~~~~~~~~~~ 482 (544)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 88888877553
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.66 E-value=5.6 Score=23.79 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=13.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEE 379 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~ 379 (544)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666665555543
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=78.62 E-value=4.7 Score=34.23 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=32.6
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
..+.++.+.+.+++.++.+ -.+.....|..+...-.+.|+++.|.+.|++.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 3456666777777776654 33445566666666666777777777766664
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.55 E-value=48 Score=29.46 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=19.5
Q ss_pred hHHHHHHHhhccchhhhhhHHhHHHhhc
Q 044352 15 YLDCLLGKCMKSKALRQGKQVHALLCTN 42 (544)
Q Consensus 15 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 42 (544)
.+...+.-+.-..||..|....++.++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqs 64 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQS 64 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677888888888877766
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.24 E-value=16 Score=27.75 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 368 SSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
+..+-+..+....+.|++......+.+|.+-+++..|.++|+-++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45556666777778999999999999999999999999999999775 333444555544
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=77.57 E-value=5.1 Score=35.67 Aligned_cols=79 Identities=6% Similarity=-0.091 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHH-HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 044352 417 VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGA-FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 493 (544)
+..|+..|...+.-..+.|.+.+...++.++. .+.+...|.. ...-+...++++.++.++.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44555566655555555666666666666552 3445556643 22245678999999999999999999999988765
Q ss_pred HH
Q 044352 494 SN 495 (544)
Q Consensus 494 ~~ 495 (544)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 404
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.57 E-value=1.1e+02 Score=33.25 Aligned_cols=154 Identities=8% Similarity=-0.079 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 317 IDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDS-SIELFERMLEEGMRANEVTLISVLSAC 395 (544)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (544)
++..+-...+.++.+.+..+ .+......++..+-...+.++...+..+. +...+..+.. .+++..-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 35555555555555544432 23334445666666666666666554432 3444555443 45666677777777
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHH
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
...|..+.+...+..+.+ .++..+-...+.++...+. +++...+..+...++...-...+.++...+....+...
T Consensus 800 g~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 777765544444444433 2455555566667766665 44555555555566776666666677665445567777
Q ss_pred HHHHHH
Q 044352 476 GEEFFE 481 (544)
Q Consensus 476 ~~~~~~ 481 (544)
+..+++
T Consensus 875 L~~al~ 880 (897)
T PRK13800 875 LTTALT 880 (897)
T ss_pred HHHHHh
Confidence 776665
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.19 E-value=4.1 Score=27.89 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=28.0
Q ss_pred hccchhhhhhHHhHHHhhc---ccchhhHHHHHHHHhhcCCChHHHHH
Q 044352 24 MKSKALRQGKQVHALLCTN---DLNIFSLKSKLVGVYAGCGDVNSARL 68 (544)
Q Consensus 24 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 68 (544)
...++.+.|+..+..+++. +++...++-.++.+|+..|++++++.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777776 33333355556666666666666554
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.76 E-value=13 Score=29.24 Aligned_cols=64 Identities=8% Similarity=-0.058 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChH
Q 044352 438 VEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 438 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 504 (544)
+.|.++.+-|. ........+......|++..|.++.+.++..+|+|..+....+.+|...|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45555555553 33444455566778999999999999999999999999999998888776443
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.50 E-value=21 Score=25.13 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHH
Q 044352 132 GKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEA 198 (544)
Q Consensus 132 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (544)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +.+..|..++.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455566666552 233333333332234577777777777777 7777777777777776665444
No 408
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.06 E-value=71 Score=30.11 Aligned_cols=63 Identities=8% Similarity=-0.116 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCh----hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVPMY--VTN----SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
..+.+++.|...+.++.|..+..+...+ .+. ..+.-++..-..++++..|.+.+-+++...|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3455556666666667776666665411 011 11122333444556677777766666666664
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.01 E-value=13 Score=36.45 Aligned_cols=86 Identities=14% Similarity=-0.031 Sum_probs=71.7
Q ss_pred hcCCHHHHHHHHHhCC-CCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 433 RSGRMVEAYDLLRQVP-MYVT--NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 433 ~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
..|+...|...+..+. ..|. ......+++...+.|-.-.|-.++.+.+.++...|-.+..+|.++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4689999998887763 2332 234566778888888889999999999999988899999999999999999999999
Q ss_pred HHHHHhcCC
Q 044352 510 RKIMKEKNV 518 (544)
Q Consensus 510 ~~~~~~~~~ 518 (544)
++.+.++..
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 999987654
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.85 E-value=38 Score=30.06 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHH----hcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----
Q 044352 324 ALIDMYSKCGSLKDARTLFE----ITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSAC---- 395 (544)
Q Consensus 324 ~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---- 395 (544)
.-|+++...++|.++....- .-.+-.+.+...-|-.|.+.|.+..+.++-...+...-.-+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 44788888899888865543 2223345566666777888899988888888877642122223466655544
Q ss_pred -hcCCchHHHHHHH
Q 044352 396 -SHGGLVEKGLEIF 408 (544)
Q Consensus 396 -~~~~~~~~a~~~~ 408 (544)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4578889988887
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.88 E-value=1.3e+02 Score=31.71 Aligned_cols=218 Identities=16% Similarity=0.109 Sum_probs=117.4
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCH-------hHHHHHH-HHHHcCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 044352 225 ARRGDSNAAFAFFSRMTAEGFVPDL-------VTWNAMI-SGFAQSKRENEALKLFKGMLVSG----IKPNNVTVTGVLQ 292 (544)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~ 292 (544)
....++++|..++.++...--.|+. ..|+.+- ......|++++|.++-+.....= ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888998888876544212221 1233332 23456889999999888877531 2233445566667
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHhcCCHHHHH--HHHHhcC-----Cc-----cHHHHHH
Q 044352 293 AGGLTGSIQIGREIHALVCRMGLHIDVFTGSAL-----IDMYSKCGSLKDAR--TLFEITR-----IK-----NVASWNA 355 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~--~~~~~~~-----~~-----~~~~~~~ 355 (544)
+..-.|++++|..+.....+..-..+...+... ...+...|+...+. ..|.... +. -...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777889999999888877665333333333222 23345566433332 2222211 11 1224444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhH----HH
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEG--MRANEV----TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEH----YA 425 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 425 (544)
++.++.+ .+.+..-.....+.| ..|.+. .+..++......|++++|...+.++... ...++..+ -.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHH
Confidence 4555544 333332222222211 123222 2236677778899999999999888664 22222111 11
Q ss_pred HHHH--HHHhcCCHHHHHHHHHh
Q 044352 426 CVVD--MLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 426 ~l~~--~~~~~g~~~~A~~~~~~ 446 (544)
..+. .....|+...|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 1222 23467888888777665
No 412
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.96 E-value=18 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=46.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+-.++.+.++++.|....++.+.++|.+|.-+.--|-+|.+.|-+.-|++-+....+..
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 33467778888888888888888888888888888888888888888888777766553
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.96 E-value=40 Score=26.00 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 471 LAVTMGEEFFEMG--LRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 471 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
.+..+|+.+...+ -..+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887744 56667788888888888888888888875
No 414
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.12 E-value=74 Score=28.09 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=70.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 044352 360 YGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSACSH-GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRM 437 (544)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (544)
+.+.....+|+.+-+..+.. .| +..++..--..+.. ..++.+-++.+.++.+. .+.+-.+|..--......|++
T Consensus 53 ~~~~E~S~RAl~LT~d~i~l--NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRL--NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred HhccccCHHHHHHHHHHHHh--CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhcCc
Confidence 34556677788888877774 33 22222221111111 22456666777777663 344444444332333334444
Q ss_pred H-HHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 438 V-EAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 438 ~-~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
. .=+++.+.|. ...+-.+|..--.++...++++.-+.+..++++.+-.|-.+|+..-.
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 4 4445555543 33344556555556666666777777777777776666666665433
No 415
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.05 E-value=54 Score=32.89 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHhC-C-CCCC------hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 431 LCRSGRMVEAYDLLRQV-P-MYVT------NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~-~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
..+..++..+.+.|..- . .+.| ......+.-+|....+.|.|+++++++-+.+|.++-.-.....+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34566777888777642 2 1111 22445666678888899999999999999999999998888999999999
Q ss_pred hHHHHHHHHHHHhc
Q 044352 503 WHEAENLRKIMKEK 516 (544)
Q Consensus 503 ~~~A~~~~~~~~~~ 516 (544)
-++|+.........
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999988777644
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.53 E-value=67 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=21.7
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
.|.+.|.+++|.+++++..+ +|++...-..|..+-...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 56666666666666666666 5555555444444433333
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.16 E-value=25 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 456 AGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
...++......|++++|...+++++++-
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445556677788888888888888754
No 418
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.06 E-value=77 Score=27.12 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 044352 354 NAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKER-YGVKISKEHYACVVDM 430 (544)
Q Consensus 354 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 430 (544)
+..+..+.+.+...+++...++-++.+ +.+..+-..++..++-.|+|++|..-++-..+. -...+....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677788888888887777752 445566777888888999999998777766432 0122334556655544
No 419
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.95 E-value=3.3e+02 Score=34.29 Aligned_cols=33 Identities=6% Similarity=-0.132 Sum_probs=19.1
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLS 494 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 494 (544)
...+.|+.++|-..|..+.++.-.-+.+|..+|
T Consensus 2821 f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg 2853 (3550)
T KOG0889|consen 2821 FLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWG 2853 (3550)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 445667777777777777665533334444433
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.90 E-value=14 Score=24.15 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=16.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGML 276 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (544)
|-...-.++.+|.+.|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333445666666666666666666654
No 421
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.83 E-value=60 Score=25.74 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhccC---------CChhhHHHHHHHHhccCC-hhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 044352 152 NALIDMYSKCGLLCSARRVFHGMFE---------RDVVSWTSMISGYCNVSK-VDEAVVLFERMKLEGLEPNQFTYNAII 221 (544)
Q Consensus 152 ~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 221 (544)
+.++......+++.....+++.+.. .+..+|.+++.+...... ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445444555555555555554411 234455666665544433 233445555555555566666666666
Q ss_pred HHHHh
Q 044352 222 ASYAR 226 (544)
Q Consensus 222 ~~~~~ 226 (544)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55544
No 422
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=65.89 E-value=17 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.+|..||.+-...++++.|.+=|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5688889999999999999988888765
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.14 E-value=33 Score=28.85 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
|++..+..++.++...|+.++|..+.+++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 424
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.09 E-value=1.4e+02 Score=29.43 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHhcccccC
Q 044352 90 FTGNFQEAIGYFSLMREFIYRCN 112 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~p~ 112 (544)
+.++++.|+.++..|...|..|.
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34555555555555555544443
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.44 E-value=2.1e+02 Score=30.60 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044352 80 MLNWMVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 478889999999999999999999876
No 426
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.41 E-value=1.2e+02 Score=29.26 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=9.5
Q ss_pred HHHHhCCCHHHHHHHHhh
Q 044352 156 DMYSKCGLLCSARRVFHG 173 (544)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~ 173 (544)
...+..|+.+.+..+++.
T Consensus 73 ~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 344455666655555543
No 427
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.83 E-value=1e+02 Score=26.76 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 315 LHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
++++......++..+...+- ....+....|..++..-...+ ..+..-|..... +++....+..-...
T Consensus 22 PP~s~~~L~~Ll~~i~~~~~---------~~~~K~~l~~YlLlD~~~~~~--~~~~~~Fa~~f~--ip~~~~~~~~g~W~ 88 (226)
T PF13934_consen 22 PPKSDNDLRALLDLILSSNV---------SLLKKHSLFYYLLLDLDDTRP--SELAESFARAFG--IPPKYIKFIQGFWL 88 (226)
T ss_pred CccCHHHHHHHHHHHhcCCc---------CHHHhHHHHHHHHHhcCcccc--ccHHHHHHHHhC--CCHHHHHHHHHHHH
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVT 474 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (544)
+-+ +++++|.+.+ ......+..-..++.++...|+.+.|..+++...-+.....-..+.......+...+|..
T Consensus 89 LD~-~~~~~A~~~L------~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~ 161 (226)
T PF13934_consen 89 LDH-GDFEEALELL------SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFS 161 (226)
T ss_pred hCh-HhHHHHHHHh------CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHH----hcCChHHHHHH
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICA----ADGEWHEAENL 509 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~ 509 (544)
+-+...+ +.....+..+...+. +.+..++-+.+
T Consensus 162 ~~R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 162 FQRSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 428
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.44 E-value=2.4e+02 Score=30.75 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=54.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCCCC-HhhHH-------HHHHHHHhcC---ChHHHHHHHHHhhhCCCCCCHhHHH
Q 044352 185 MISGYCNVSKVDEAVVLFERMKLEGLEPN-QFTYN-------AIIASYARRG---DSNAAFAFFSRMTAEGFVPDLVTWN 253 (544)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-------~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (544)
+=+++.....++.|...|+++... -|. ...|. +++.-....| .+++|+.-|+.+... +.-+--|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHH
Confidence 446777888899999999998765 222 22222 2333333334 467777777777643 22333344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc
Q 044352 254 AMISGFAQSKRENEALKLFKGMLVS 278 (544)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (544)
--.-.|-+.|++++-++.+.-..++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445677788888777777665543
No 429
>PF15469 Sec5: Exocyst complex component Sec5
Probab=62.00 E-value=37 Score=28.25 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--ChhHHHHH
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP---MYV--TNSMAGAF 459 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l 459 (544)
...+..++..-.+...+..++.++++..--+.+| .-+.-+.+.|+++.+...|.++. ... ....+..+
T Consensus 57 ~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP-------~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v 129 (182)
T PF15469_consen 57 NSVFKPLLERREKADKLRNALEFLQRNRFLFNLP-------SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV 129 (182)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRV 527 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 527 (544)
.. +.+....-++..+-..-.++. ...++..++++.+.+.+...+|.|.|+
T Consensus 130 ~~------eve~ii~~~r~~l~~~L~~~~------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 WS------EVEKIIEEFREKLWEKLLSPP------------SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HH------HHHHHHHHHHHHHHHHHhCCC------------CCHHHHHHHHHHHHhCCCCCCHHHHHH
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.46 E-value=1.3e+02 Score=27.35 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----------hcCCHHH
Q 044352 370 IELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLC----------RSGRMVE 439 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 439 (544)
.++++.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+... +.-+..++..++ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777888888888888887777777777888888888888653 222444444433 2577777
Q ss_pred HHHHHHhCC
Q 044352 440 AYDLLRQVP 448 (544)
Q Consensus 440 A~~~~~~~~ 448 (544)
..++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
No 431
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.01 E-value=25 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 468 RRDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
.++.|..+|++.+...| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46788888888888776 4666665543
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.95 E-value=27 Score=30.85 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----c-cccCHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 044352 83 WMVMASAFTGNFQEAIGYFSLMREF----I-YRCNKFTFSIVLKACVGLLDIKKGKQVHAVA 139 (544)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 139 (544)
.+...|.+.|++++|+++|+.+... | ..+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666677777777777666321 1 2234445555666666777777666654443
No 433
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.40 E-value=45 Score=28.88 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC
Q 044352 359 CYGKHGMVDSSIELFERMLEEGMR 382 (544)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~~~~~~~ 382 (544)
-+...|+++.|+++.+-++++|.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 356788999999999999988743
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.29 E-value=39 Score=28.46 Aligned_cols=51 Identities=14% Similarity=-0.080 Sum_probs=30.3
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444333344677777777777777777777777766665
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.06 E-value=62 Score=24.76 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=19.0
Q ss_pred HHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 044352 102 SLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVAT 140 (544)
Q Consensus 102 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 140 (544)
+.+...++.|++......+++|.+.+|+..|.++++-++
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333334444555555555555555555555555554444
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.78 E-value=62 Score=22.89 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=20.2
Q ss_pred hcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHH
Q 044352 331 KCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 369 (544)
..|+.+.|.+++..+. ..+..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 5555555555555555544333
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.23 E-value=1e+02 Score=26.53 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.9
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 044352 358 GCYGKHGMVDSSIELFERML 377 (544)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~ 377 (544)
......|+.+.|++....+.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33445555555555555443
No 438
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.62 E-value=1.5e+02 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHH
Q 044352 470 DLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
..|++...++++.+|.-|..+..
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHH
Confidence 35778888899988866654433
No 439
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=1.4e+02 Score=26.70 Aligned_cols=52 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccccCHHH-------HHHHHHHhhCCCChHHHHHH
Q 044352 84 MVMASAFTGNFQEAIGYFSLMREFIYRCNKFT-------FSIVLKACVGLLDIKKGKQV 135 (544)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~ 135 (544)
+..-..+.+++++|+..+.+....|+..+..+ ...+...|...|+...-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44556677888888888888888877665543 33445555666655544443
No 440
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.57 E-value=1.5e+02 Score=26.80 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 281 KPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM-GLHIDVFTGSALIDMYSKCGSLKDARTLFE 343 (544)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 343 (544)
.++..+...++..++..+++....+++...... +...|...|..++......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344444444444444444444444444443333 333344444444444444444444444443
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.40 E-value=87 Score=24.15 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHh
Q 044352 131 KGKQVHAVATQMGFEND-VSVGNALIDMYSKCGLLCSARRVFH 172 (544)
Q Consensus 131 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 172 (544)
.+..+|..|...|+-.. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555544443222 2334444555555555555555544
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.89 E-value=73 Score=25.34 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 371 ELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
.+.+.+.+.|+++++. -..++..+...++.-.|.++++.+.+. +...+..+....+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 3445556667666654 334555566666668888888888775 55555555555555555544
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.93 E-value=49 Score=27.29 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=10.1
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 044352 87 ASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~ 106 (544)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44455555555555555443
No 444
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.80 E-value=1.7e+02 Score=27.10 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=103.4
Q ss_pred ccHHHHHHHHHHHHhcC---C---------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 044352 348 KNVASWNAMIGCYGKHG---M---------VDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERY 415 (544)
Q Consensus 348 ~~~~~~~~l~~~~~~~g---~---------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (544)
.|+.+|-.++..--..- . .+.-+.++++++++ .+.+......++..+.+..+.+...+.|+++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~- 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK- 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 46778888886543321 1 34567789998887 3557778888889999988999999999999874
Q ss_pred CCCCchhHHHHHHHHHHh---cCCHHHHHHHHHhCC-------CCC--------C--hh---HHHHHHHHHhhcCChHHH
Q 044352 416 GVKISKEHYACVVDMLCR---SGRMVEAYDLLRQVP-------MYV--------T--NS---MAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-------~~~--------~--~~---~~~~l~~~~~~~g~~~~A 472 (544)
.+-+...|...+..... .-.+++...+|.+.. ... . .. .+..+...+.+.|..+.|
T Consensus 95 -~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 -NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred -CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 34467778777766543 235667766666541 111 1 11 223333345688999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
+.+++.+++++---|.....- ...+.++.|+..-+.++
T Consensus 174 va~~Qa~lE~n~~~P~~~~~~--------~~~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 174 VALWQALLEFNFFRPESLSSS--------SFSERLESFEEFWESEV 211 (321)
T ss_pred HHHHHHHHHHHcCCccccccc--------cHHHHHHHHHHHhCcCC
Confidence 999999999883223222211 11155666666666654
No 445
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.64 E-value=1.7e+02 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=7.7
Q ss_pred HHHHHHHHhcCCchH
Q 044352 388 LISVLSACSHGGLVE 402 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~ 402 (544)
|..++.+++..|+.+
T Consensus 324 yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSE 338 (412)
T ss_pred hhHHHHHHhcCChHH
Confidence 444555555555544
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.35 E-value=1.6e+02 Score=26.36 Aligned_cols=159 Identities=14% Similarity=0.012 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--------Ccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHH
Q 044352 324 ALIDMYSKCGSLKDARTLFEITR--------IKN---VASWNAMIGCYGKHGMVDSSIELFERMLEE----GMRANEVTL 388 (544)
Q Consensus 324 ~l~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 388 (544)
.++..+.+.|++.+|+.++..+. +++ +..+.+ .+|....+..++..-+...... -.||....-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES--Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~ 207 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES--KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ 207 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH--HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH
Confidence 46677778888888877665332 112 112211 2233333444433333332221 134433333
Q ss_pred HHHHHH--HhcCCchHHHHHHHHHHHHHhCC-CCchhHHHHH---HHHHHhcCCHHHHHHHHHhCC-----CCCChhHHH
Q 044352 389 ISVLSA--CSHGGLVEKGLEIFRSMKERYGV-KISKEHYACV---VDMLCRSGRMVEAYDLLRQVP-----MYVTNSMAG 457 (544)
Q Consensus 389 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 457 (544)
.-++.+ .|...++..|..+|-+..+.+.. ..+......+ +-.-...+..++...++..-- ......+..
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~ 287 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAML 287 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHH
Confidence 334443 34456777888877777662211 2233222222 112223455555555554321 122334444
Q ss_pred HHHHHHh--hcCChHHHHHHHHHHHHcCC
Q 044352 458 AFRNGCN--IHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 458 ~l~~~~~--~~g~~~~A~~~~~~~~~~~p 484 (544)
.+..++. ...++..|..-|+.-+..+|
T Consensus 288 avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 288 AVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 4444443 23466677666665555444
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.15 E-value=49 Score=20.23 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=22.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEGMRANEVTLISVLS 393 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 393 (544)
.+.|-.+++...+++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777666665554
No 448
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=54.11 E-value=1.9e+02 Score=26.93 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIE-LFERMLEEGMRANEVTLISVLSACSHGGLVEK 403 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (544)
+...+++.++.+.+..+-+.+..-......++..++-+..-.+...+ +++.+... ||......++++.........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 34445555555444444444443333344444444444333333222 22333222 566666666666665554444
Q ss_pred HHHHHHHHHH
Q 044352 404 GLEIFRSMKE 413 (544)
Q Consensus 404 a~~~~~~~~~ 413 (544)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 4443444444
No 449
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.78 E-value=59 Score=23.58 Aligned_cols=34 Identities=12% Similarity=-0.162 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
..+.-.|.+.|+.+.|.+-|+.-..+.|++....
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 3344455566666666666666555566544433
No 450
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=53.64 E-value=76 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 044352 423 HYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~ 442 (544)
++..|..++...|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 34445555566666655443
No 451
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=53.64 E-value=77 Score=30.94 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
+...|-..+.-|...++|+.|.++..... ....|..+.....+..+..-+...|..
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~-------eqTMWAtlAa~Av~~~~m~~~EiAYaA 627 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ-------EQTMWATLAAVAVRKHQMQISEIAYAA 627 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc-------chHHHHHHHHHHHhhccccHHHHHHHH
Confidence 33345555566666677777776655442 223455555555555555544444443
No 452
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=53.57 E-value=1.9e+02 Score=26.88 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=38.8
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHH-HHHHHHHHhcccccCHHHHHHHHHHhhCCCCh
Q 044352 51 SKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEA-IGYFSLMREFIYRCNKFTFSIVLKACVGLLDI 129 (544)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 129 (544)
..+...+++.++.+.+..+-+.+..--......+..++-...=.+.. ..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34455555555555544444444432233344444444333322222 2223333221 5555555555555554444
Q ss_pred HHHHHHHHHHHHc
Q 044352 130 KKGKQVHAVATQM 142 (544)
Q Consensus 130 ~~a~~~~~~~~~~ 142 (544)
......+..+.+.
T Consensus 247 ~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 247 DLVAILIDALLQS 259 (340)
T ss_pred hHHHHHHHHHhcC
Confidence 4444434444443
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.55 E-value=29 Score=31.21 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHH
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFS 117 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 117 (544)
|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5566777777777777777777777666553333443
No 454
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.42 E-value=3e+02 Score=29.20 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=30.2
Q ss_pred HHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044352 53 LVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMR 105 (544)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (544)
+-..|...|+++.|.+.-..-+..-...+..-...+.+.+++..|-++|-++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 45566677777777776554321111123333445566677777777777664
No 455
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.23 E-value=44 Score=21.81 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhh
Q 044352 218 NAIIASYARRGDSNAAFAFFSRMT 241 (544)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~ 241 (544)
-.++.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555666666666666555544
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.20 E-value=60 Score=28.69 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=9.5
Q ss_pred HHHHhcCCchHHHHHHHHHH
Q 044352 392 LSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~ 411 (544)
..-|...|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444445555555554444
No 457
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.19 E-value=1.5e+02 Score=25.73 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVE 402 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (544)
...+..|.+.-++.-|-..++++.+|=..- ..+--|.+..+.+--.++.+-....+++-+...+..++ +...|+..
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEPIQSR--CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEPIQSR--CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhhHHhh--hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Confidence 334555666666665555555555432111 11112333333333333333334444554444444443 34667777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044352 403 KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
.|+..++.....+|.... ..+|+- ...|.+.....++..|. .+++++|.+++.+++++
T Consensus 210 QalNnLQst~~g~g~Vn~--------------------enVfKv-~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 210 QALNNLQSTVNGFGLVNQ--------------------ENVFKV-CDEPHPLLVKKMLQACL-KRNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHhccccccch--------------------hhhhhc-cCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHc
Confidence 777777666553332211 111221 13667776666665444 45788888888888887
Q ss_pred CCCCchhHHHHHHHHH
Q 044352 483 GLRKPDGFVMLSNICA 498 (544)
Q Consensus 483 ~p~~~~~~~~l~~~~~ 498 (544)
+-...+....+..++-
T Consensus 268 gysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 268 GYSPEDIITTLFRVVK 283 (333)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7443444444444443
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.95 E-value=38 Score=32.24 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC-----------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP-----------NPNVFMLNWMVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
+...+++.++-.||+..|+++++.+. .-...++.-+.-+|...+++.+|++.|....-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888999999999998875 23445677788888899999999999888753
No 459
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=51.93 E-value=1e+02 Score=23.40 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHH-------cCCCCchhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFE-------MGLRKPDGF----VMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
..+..|..++...|++++++.-.+.++. ++.+....| ..-+.++...|+.++|+..|+..-
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455667788899999998887777765 444444434 345677889999999999998754
No 460
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=50.81 E-value=2.2e+02 Score=26.89 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCC------h--hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch-------h
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVPMYVT------N--SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD-------G 489 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~ 489 (544)
..+...+-.+|+.++|..++.+.+...- . ....-=++.|...+|+-.|--+-++.....-+++. .
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 4466677889999999999888752111 1 11112234667788999988888877665433332 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEecC
Q 044352 490 FVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKRN 531 (544)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (544)
|..+.....+.+.+=++-+.|+.+..-+..+....-|..+.-
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 777788888889999999999999887765555555665544
No 461
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.16 E-value=2.6e+02 Score=27.41 Aligned_cols=157 Identities=13% Similarity=0.012 Sum_probs=91.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHH--------HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchh--HHH
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEG-MRANEV--------TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKE--HYA 425 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 425 (544)
+.+-.-.|++.+|++-+..|.+-- -.|.+. .-..+...|..-+.++.|..-|....+. -...|.. .-.
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nl 408 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNL 408 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 333445788999988888887631 233321 1122233355677888888877776654 2222322 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CChh-------HHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CC-----chhH
Q 044352 426 CVVDMLCRSGRMVEAYDLLRQVPMY--VTNS-------MAGAFRNGCNIHGRRDLAVTMGEEFFEMGL-RK-----PDGF 490 (544)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~-----~~~~ 490 (544)
.+.-.|.+.|+.+.-.++++.+.-. .+.. .+...+-.....+++.+|+..+++.+++.- .+ .-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 4556688888888888888777411 1111 111122223467889999999998888651 11 1234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 044352 491 VMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
..|+.+..-.|+..++.+...-..
T Consensus 489 vLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHH
Confidence 455666777788888777655444
No 462
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.13 E-value=1.7e+02 Score=25.24 Aligned_cols=30 Identities=10% Similarity=-0.127 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
.....++....+.|++++|.++|.+++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344556667788999999999999998765
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.07 E-value=24 Score=31.53 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=21.7
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
+.|+.++|..+|+..... -+.++.....++......++.-+|-++|-++
T Consensus 128 ~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 445555555555555431 1222333333333333444444454444443
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.00 E-value=1.2e+02 Score=27.45 Aligned_cols=42 Identities=10% Similarity=0.283 Sum_probs=20.2
Q ss_pred HHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044352 235 AFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGML 276 (544)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (544)
++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444555554444444444444444455555555544
No 465
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.49 E-value=1.1e+02 Score=22.80 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 125 GLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.....++|..+.+.+...+- ....+.-..+..+...|++++|...=.....||...|.++.. .+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 33455666666666666542 122222233344566677777744444444466666655543 355666666666665
Q ss_pred HHHcC
Q 044352 205 MKLEG 209 (544)
Q Consensus 205 ~~~~~ 209 (544)
+-.+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55444
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.85 E-value=33 Score=35.71 Aligned_cols=100 Identities=15% Similarity=0.028 Sum_probs=56.7
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVT 474 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (544)
+...|+++.|++.-.++ .+..+|..|+....++|+.+-|...|++.. .|..+.-.|.-.|+.++-.+
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHH
Confidence 34567777777665443 256677788887778888777777777654 23333335666777777666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
+.+-+-..+ |...... . -.=.|+.++-..+++.
T Consensus 720 m~~iae~r~--D~~~~~q--n-alYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 720 MMKIAEIRN--DATGQFQ--N-ALYLGDVKERVKILEN 752 (1202)
T ss_pred HHHHHHhhh--hhHHHHH--H-HHHhccHHHHHHHHHh
Confidence 555443322 1111111 1 1124666666666654
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.39 E-value=2.9e+02 Score=27.55 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCc--cHH---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRIK--NVA---SWNAMIGCYGKHGMVDSSIELFERMLE 378 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 378 (544)
..++.-|.+.+++++|..++..|.=. ... +.+.++..+.+..--.+....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35666788899999999998887732 222 333444444444444444455555544
No 468
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.38 E-value=52 Score=29.70 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=23.7
Q ss_pred CCHhH-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044352 247 PDLVT-WNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTV 287 (544)
Q Consensus 247 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (544)
|+... |+..|....+.||.++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34433 345666666666666666666666666654433343
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.17 E-value=87 Score=24.90 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=13.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPNNVT 286 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (544)
++..+.+.++.-.|.++|+.+.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444444444455555444443333333
No 470
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.16 E-value=1.1e+02 Score=22.75 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHH
Q 044352 182 WTSMISGYCNVSKVDEAVVLFERMKL 207 (544)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (544)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.70 E-value=1.4e+02 Score=33.01 Aligned_cols=122 Identities=11% Similarity=-0.043 Sum_probs=78.4
Q ss_pred HHhcCCchHHHHH------HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHHH
Q 044352 394 ACSHGGLVEKGLE------IFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVT-NSMAG 457 (544)
Q Consensus 394 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~ 457 (544)
.+...|.+.++.+ ++...... -.+.....|..+...+.+.|+.++|...-.+.. ..|+ ...+.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3445566666666 44433221 234556778888888889999999888776542 2222 23444
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcC--------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMG--------LRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.+...+...++...|...+.++..+- |+-......+..++...++++.|+++++.+.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55545556667888888887776632 333344566777777778999999998888763
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.26 E-value=4.2e+02 Score=29.05 Aligned_cols=265 Identities=11% Similarity=-0.026 Sum_probs=136.2
Q ss_pred HHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 044352 169 RVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD 248 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (544)
.+...+..+|+..-...+..+.+.+..+ +...+..... .++...-...+.++.+.+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 4444445666666666666666666533 4344444432 33333333333333333221111122223322 245
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 249 LVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDM 328 (544)
Q Consensus 249 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (544)
..+-...+..+...+..+ .. .+-.+++ .+|...-...+.++...+..+.. ..+. ..++..+-...+.+
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~a 765 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKG 765 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHH
Confidence 555445555554432111 11 2222221 44555555556665555443321 1121 23456666666667
Q ss_pred HHhcCCHHH-HHH-HHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044352 329 YSKCGSLKD-ART-LFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLE 406 (544)
Q Consensus 329 ~~~~~~~~~-A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 406 (544)
+...+..+. +.. +...+..++...-...+.++...|....+...+..++. .++..+-...+.++...+. +++..
T Consensus 766 L~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHH
Confidence 766655432 223 33444557777777788888888876655555555554 3566666667777777665 34555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHH
Q 044352 407 IFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFR 460 (544)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 460 (544)
.+..+.+ .++..+-...+.++.+.+....+...+..+...++...-....
T Consensus 842 ~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 842 ALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555543 4666677777777777544456666666665455555444333
No 473
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.51 E-value=61 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred hcCChHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 465 IHGRRDLAVTMGEEFFEM-----GLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..|+.+.|+.+|+++++. .-+.+ .....-.|+.|..+-++|.+
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC--------cccccHHHHHHHHHHHHHHH
Confidence 457888888888887662 11111 23455678888888888764
No 474
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.22 E-value=36 Score=31.98 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 044352 85 VMASAFTGNFQEAIGYFSLM 104 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~ 104 (544)
.-+|...+++.+|.+.|-..
T Consensus 279 GFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 279 GFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554443
No 475
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.40 E-value=46 Score=22.81 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.7
Q ss_pred hhcCChHHHHHHHHHHHHc
Q 044352 464 NIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~ 482 (544)
-..|++++|..+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3678999999999998874
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.31 E-value=1.4e+02 Score=23.01 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044352 471 LAVTMGEEFFEMG--LRKPDGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 471 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
....+|..+.+.+ ...+..|...+..+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777654 5556677778888888899999888875
No 477
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=44.13 E-value=1.4e+02 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=19.3
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhCCCC
Q 044352 393 SACSHGGLVEKGLEIFRSMKERYGVKI 419 (544)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 419 (544)
..+...|+.-+|+++.+.+....|-..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 456677888888888888877644433
No 478
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.81 E-value=75 Score=19.40 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=16.0
Q ss_pred hcCCHHHHHHHHHHHHhcccccCHHHHHHHH
Q 044352 90 FTGNFQEAIGYFSLMREFIYRCNKFTFSIVL 120 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll 120 (544)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4445555555555555555555554444444
No 479
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.68 E-value=3.6e+02 Score=28.78 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=87.4
Q ss_pred HHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 044352 329 YSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIF 408 (544)
Q Consensus 329 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (544)
...+|+++.|++.-..+. +..+|..|+......|+.+-|+..|++... |..|-..|.-.|+.++-.++.
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 456788888888766655 455789999999999999999998888765 444555667788888877766
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 409 RSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
+.+..+ .|.... ...-.-.|+.++-..+++..... +.+|. ....+|.-++|.++.++.-...
T Consensus 722 ~iae~r----~D~~~~---~qnalYl~dv~ervkIl~n~g~~--~layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 722 KIAEIR----NDATGQ---FQNALYLGDVKERVKILENGGQL--PLAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHhh----hhhHHH---HHHHHHhccHHHHHHHHHhcCcc--cHHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 655432 222111 11122368888888888876421 22222 2335788889999888887633
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.33 E-value=3.2e+02 Score=26.53 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhh
Q 044352 193 SKVDEAVVLFERMKLEGLEPNQFT 216 (544)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~ 216 (544)
++++.|+..+..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666655554433
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.21 E-value=3.1e+02 Score=26.28 Aligned_cols=55 Identities=5% Similarity=-0.084 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccCHH--HHHHHHHHhh--CCCChHHHHHHHHHHHHc
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRCNKF--TFSIVLKACV--GLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 142 (544)
.+...+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345678888888888888876 554444 3444444443 445667777777766544
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.20 E-value=2.8e+02 Score=25.75 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSH------GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMV 438 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 438 (544)
-.+++..++.+...++ .|.+......+.++-. .-+|..-..+|+.+... .|++.+-.+-.-+..+.--.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHHHHHHhhhHH
Confidence 3567888888888886 4888777777766532 34677777777777643 455443322333344444566
Q ss_pred HHHHHHHhCCCCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 439 EAYDLLRQVPMYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 439 ~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
.++...+.+...|. ...+..-...+.+.|+.++|...|++++.+-++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 66666666643322 233444455678889999999999999988775443
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.91 E-value=2.5e+02 Score=25.13 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred hcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----ccccCHHHHHHHHHHhhCCCChH-HH
Q 044352 58 AGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREF----IYRCNKFTFSIVLKACVGLLDIK-KG 132 (544)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~-~a 132 (544)
.+++++++|++++.. =...+.+.|+...|-++-..+++. +.+++......++..+...+.-+ .-
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred HHHHHHHHHc-----CCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 044352 133 KQVHAVATQM-----GFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKL 207 (544)
Q Consensus 133 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (544)
.++.+.+.+. .-.-++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++--++.+
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R--- 146 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR--- 146 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH---
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH---
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC---------------CCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 044352 208 EGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE---------------GFVPDLVTWNAMISGFAQSKRENEALKLF 272 (544)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (544)
.+-.|...++...|...+....+. ........|..++-..++.++.+.-..+.
T Consensus 147 ------------aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~ 214 (260)
T PF04190_consen 147 ------------AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLC 214 (260)
T ss_dssp ------------HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred ------------HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHH
Q ss_pred HH
Q 044352 273 KG 274 (544)
Q Consensus 273 ~~ 274 (544)
++
T Consensus 215 ~~ 216 (260)
T PF04190_consen 215 EK 216 (260)
T ss_dssp HH
T ss_pred HH
No 484
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.81 E-value=2.3e+02 Score=24.74 Aligned_cols=44 Identities=9% Similarity=0.246 Sum_probs=29.4
Q ss_pred HHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044352 342 FEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEV 386 (544)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 386 (544)
|+-...|.+.....++..|. .+++++|.+++.++-+.|+.|...
T Consensus 231 fKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 33344566666666666554 457888888888888888776543
No 485
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=42.29 E-value=1.1e+02 Score=23.57 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=28.9
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
.+...-+.+.|..+|+++++..|++-.++..++..+..
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44455678999999999999999999998888877654
No 486
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.13 E-value=69 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHh-C-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERY-G-----VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
.+...+++.++-.|++..|+++++.+.-.. + ..-...++..++-+|...+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999999998762210 0 11234567788999999999999999999875
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.47 E-value=1.3e+02 Score=30.45 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHhhccchhhhhhHHhHHHhhc----ccchhhHHHHHHHHhhcCCChH------HHHHHhccCC-CCCchhHHHHHH
Q 044352 18 CLLGKCMKSKALRQGKQVHALLCTN----DLNIFSLKSKLVGVYAGCGDVN------SARLVFDKIP-NPNVFMLNWMVM 86 (544)
Q Consensus 18 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~l~~ 86 (544)
.++.+|..+|++-.+.++++..+.. ..-.. .++..++.+.+.|.++ .|.+.++... ..|..+|..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~-~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLP-MINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehh-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccCHHHHHHH
Q 044352 87 ASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV 119 (544)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 119 (544)
+....-...-.+-++.+++.+...--...+...
T Consensus 112 ~sln~t~~~l~~pvl~~~i~~s~ngv~di~~~~ 144 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIHRSANGVIDILMHE 144 (1117)
T ss_pred hhcChHhHHhccHHHHHHHHhhhhhHHHHHhhh
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.37 E-value=2.8e+02 Score=25.30 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=28.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044352 220 IIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLV 277 (544)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (544)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444455555555555444 222333455666677777777777776653
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.32 E-value=1.1e+02 Score=29.44 Aligned_cols=32 Identities=6% Similarity=-0.070 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
++...+..+.+.+++..|..+.+++++++|+.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 45555667789999999999999999999853
No 490
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.04 E-value=3.3e+02 Score=25.98 Aligned_cols=26 Identities=12% Similarity=-0.198 Sum_probs=15.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC
Q 044352 358 GCYGKHGMVDSSIELFERMLEEGMRA 383 (544)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 383 (544)
..+.+.+++..|..+|+++.....+|
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccCh
Confidence 34455667777777777776654333
No 491
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.91 E-value=1.5e+02 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLE 378 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 378 (544)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777778888888888777766
No 492
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.72 E-value=2.8e+02 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHcC
Q 044352 264 RENEALKLFKGMLVSG 279 (544)
Q Consensus 264 ~~~~a~~~~~~~~~~~ 279 (544)
+..+|..+|.+..+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4555555555555554
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.69 E-value=5.1e+02 Score=28.52 Aligned_cols=206 Identities=9% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhhc-------cCCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHcCCCCCHhhHHHHH---
Q 044352 153 ALIDMYSKCGLLCSARRVFHGM-------FERDVVSWTSMISGYCNV-SKVDEAVVLFERMKLEGLEPNQFTYNAII--- 221 (544)
Q Consensus 153 ~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 221 (544)
..++-+...+++.+|..+.++- ...++..|-.=+..+.++ ++.+-.-.++..+.+. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ---------HHHHhcCChHHHHHHHHHhhh-CCCCCCHhHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 222 ---------ASYARRGDSNAAFAFFSRMTA-EGFVPDLVTWNAMISGFAQSK--RENEALKLFKGMLVSGIKPNNVTVTG 289 (544)
Q Consensus 222 ---------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (544)
......+.+...-+.+..... . .........++.+|++.+ +++.|+....++.+.+...-......
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~--~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alky 854 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEKP--KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKY 854 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhH
Q ss_pred HHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHH
Q 044352 290 VLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 369 (544)
++-..--..-++.|.-.|+ .-..++-+-..+.|..+=+-+++++..-....-.-.|+ .+.+++++|
T Consensus 855 l~fLvDvn~Ly~~ALG~YD------------l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID--~hLkRy~kA 920 (928)
T PF04762_consen 855 LCFLVDVNKLYDVALGTYD------------LELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKID--DHLKRYEKA 920 (928)
T ss_pred heeeccHHHHHHHHhhhcC------------HHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHh--hhhCCHHHH
Q ss_pred HHHHHHH
Q 044352 370 IELFERM 376 (544)
Q Consensus 370 ~~~~~~~ 376 (544)
+..+.++
T Consensus 921 L~~L~~~ 927 (928)
T PF04762_consen 921 LRHLSAC 927 (928)
T ss_pred HHHHHhh
No 494
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.64 E-value=2.9e+02 Score=25.24 Aligned_cols=124 Identities=11% Similarity=0.101 Sum_probs=68.5
Q ss_pred cccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc---cCCChhhHHHH
Q 044352 109 YRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM---FERDVVSWTSM 185 (544)
Q Consensus 109 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l 185 (544)
+..+......++.. ..||...|+..++.+.......+. .. =..+...+.+..- ..++...+..+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~~----------it~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-IY----------LNKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-Cc----------cCHHHHHHHHhHHHhcccCCcchhHHH
Confidence 44556666666554 568888888888875532100100 00 0112222222211 12333444455
Q ss_pred HHHHhc---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHhhhCCC
Q 044352 186 ISGYCN---VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD-----SNAAFAFFSRMTAEGF 245 (544)
Q Consensus 186 ~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 245 (544)
++++.+ -.+++.|+-.+.+|++.|..|....-..++.++-.-|. ...|...++.....|.
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 666655 46888899999999988877777666666666655553 2334455555555553
No 495
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.51 E-value=1.7e+02 Score=22.55 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHhhcCChHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVPMYVT-NSMAGAFRNGCNIHGRRDLAVTMGEE 478 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (544)
..+..++..++.-.|..++|.++++...-.+. ...-..++..|....+-++..++=++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455566666666666666666666542222 12223455566666555555544433
No 496
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=40.38 E-value=66 Score=28.91 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHH
Q 044352 472 AVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 472 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 507 (544)
|+.+|..+..+.|.+..+|+.+|-++...|+.=+|.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~av 36 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAV 36 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHH
Confidence 344555555555555555555555555544444444
No 497
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.15 E-value=61 Score=29.28 Aligned_cols=77 Identities=5% Similarity=-0.136 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM-LSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVE 528 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 528 (544)
..|+..|...+.-..+.|-+.+...++.++++..|.|.+.|.. ...-+...++++.++.++.+-+..+. +...-|++
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~--~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS--RSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC--CCchHHHH
Confidence 4566777766655556778999999999999999999999887 45567788999999999988766553 33344544
No 498
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.73 E-value=5.7e+02 Score=28.43 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
|..+++.+...+-.+.+.++-..+.+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe 1011 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE 1011 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=3.6e+02 Score=29.83 Aligned_cols=128 Identities=12% Similarity=0.028 Sum_probs=75.6
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhc-c---cchhhHHHHHHHHhhcCCChHHHHHHhccCCC--CCchhHHHHHHH
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTN-D---LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPN--PNVFMLNWMVMA 87 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 87 (544)
+.|..+++.+-.-|..+.+.++...+++. + |.....++.+-......|.+-+|...+-+.+. ....+..-++..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45777788888888999999999888888 2 22232556666666777888888877766552 223345556666
Q ss_pred HHhcCCHH------------HHHH-HHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHH-HHHHHH
Q 044352 88 SAFTGNFQ------------EAIG-YFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQV-HAVATQ 141 (544)
Q Consensus 88 ~~~~~~~~------------~A~~-~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~ 141 (544)
+...|.++ +..+ +++..-+.........|..+...+...+++.+|-.+ |+...+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 66666543 2333 233332222222334455555555667777665543 444333
No 500
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.62 E-value=43 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=22.2
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 044352 190 CNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIAS 223 (544)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (544)
...|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667788888888888877765 4555543
Done!