Query 044352
Match_columns 544
No_of_seqs 665 out of 3167
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 03:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-41 1E-45 342.1 44.9 449 57-517 63-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.2E-42 2.5E-46 346.6 40.2 481 11-499 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-30 2.5E-34 243.8 43.5 374 85-502 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-28 7.5E-33 233.6 43.2 352 19-378 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.8E-33 237.6 22.7 215 95-331 7-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 1.3E-26 4.4E-31 230.2 36.4 263 250-517 187-479 (514)
7 2gw1_A Mitochondrial precursor 100.0 8.2E-26 2.8E-30 224.4 36.6 453 14-494 7-490 (514)
8 4g26_A Pentatricopeptide repea 100.0 2.1E-27 7.2E-32 230.0 21.9 188 79-297 27-223 (501)
9 3fp2_A TPR repeat-containing p 100.0 2.1E-25 7.1E-30 222.8 33.2 433 45-491 24-500 (537)
10 3fp2_A TPR repeat-containing p 99.9 3.9E-25 1.3E-29 220.8 32.9 423 12-448 24-489 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.3E-24 1.5E-28 208.2 37.7 342 146-517 24-411 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 9.4E-24 3.2E-28 205.8 36.7 385 94-507 8-445 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.4E-21 4.9E-26 184.1 35.2 312 179-498 3-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.3E-21 1.8E-25 180.2 35.2 300 213-517 2-336 (359)
15 2xm6_A Protein corresponding t 99.9 2.1E-19 7.3E-24 176.5 42.3 379 112-514 38-465 (490)
16 3hym_B Cell division cycle pro 99.9 9.5E-21 3.2E-25 176.3 30.6 287 214-504 22-322 (330)
17 2xm6_A Protein corresponding t 99.9 1.3E-18 4.6E-23 170.8 44.5 363 132-518 26-434 (490)
18 3hym_B Cell division cycle pro 99.9 3.6E-20 1.2E-24 172.4 28.6 287 246-539 19-322 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2.6E-18 8.8E-23 170.6 42.8 212 301-517 255-493 (530)
20 1xi4_A Clathrin heavy chain; a 99.9 7.7E-17 2.6E-21 165.7 50.5 419 9-477 981-1440(1630)
21 1fch_A Peroxisomal targeting s 99.9 4.4E-20 1.5E-24 174.7 21.6 305 188-514 34-357 (368)
22 4g1t_A Interferon-induced prot 99.9 1.1E-18 3.7E-23 171.0 32.0 390 77-527 50-470 (472)
23 2ooe_A Cleavage stimulation fa 99.8 1.2E-17 4E-22 165.9 38.7 215 267-485 256-495 (530)
24 1xi4_A Clathrin heavy chain; a 99.8 2E-16 6.7E-21 162.7 46.8 372 51-473 989-1375(1630)
25 1b89_A Protein (clathrin heavy 99.8 7E-19 2.4E-23 162.2 25.4 280 59-372 15-304 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 2.1E-18 7E-23 156.2 27.5 272 223-510 8-288 (291)
27 4eqf_A PEX5-related protein; a 99.8 1.3E-19 4.4E-24 171.2 20.3 256 252-512 68-352 (365)
28 1b89_A Protein (clathrin heavy 99.8 3.3E-18 1.1E-22 157.7 25.1 376 25-446 15-413 (449)
29 1fch_A Peroxisomal targeting s 99.8 5E-18 1.7E-22 160.5 27.3 298 158-481 35-358 (368)
30 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4E-23 164.6 22.0 257 12-273 64-351 (365)
31 3cv0_A Peroxisome targeting si 99.8 7.3E-19 2.5E-23 163.2 20.1 278 214-515 21-314 (327)
32 4g1t_A Interferon-induced prot 99.8 4E-17 1.4E-21 159.9 31.6 385 46-494 51-471 (472)
33 3mkr_A Coatomer subunit epsilo 99.8 4.9E-18 1.7E-22 153.7 22.6 247 256-517 6-265 (291)
34 3cv0_A Peroxisome targeting si 99.8 6.2E-18 2.1E-22 157.0 23.9 259 12-275 20-312 (327)
35 2pl2_A Hypothetical conserved 99.8 3.9E-17 1.3E-21 141.3 19.2 195 316-514 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.8 1.6E-16 5.5E-21 141.8 22.9 230 250-517 6-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-15 4E-20 147.4 28.3 250 17-279 7-281 (452)
38 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-16 4.9E-21 153.8 21.5 334 165-516 55-421 (452)
39 3uq3_A Heat shock protein STI1 99.7 1.7E-16 5.7E-21 141.8 19.6 238 214-496 5-256 (258)
40 3u4t_A TPR repeat-containing p 99.7 1.5E-15 5.2E-20 136.7 22.2 257 216-501 5-269 (272)
41 1ouv_A Conserved hypothetical 99.7 1.9E-14 6.5E-19 129.5 26.9 224 248-517 5-252 (273)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.6E-15 8.9E-20 135.4 21.2 239 263-510 19-269 (275)
43 2pl2_A Hypothetical conserved 99.7 7.3E-16 2.5E-20 133.2 16.5 192 10-206 2-212 (217)
44 3spa_A Mtrpol, DNA-directed RN 99.7 7.5E-17 2.6E-21 160.8 9.7 116 179-294 127-246 (1134)
45 2h6f_A Protein farnesyltransfe 99.7 3.3E-15 1.1E-19 139.6 20.3 246 6-257 90-361 (382)
46 3vtx_A MAMA; tetratricopeptide 99.7 9.2E-15 3.1E-19 123.0 20.8 166 349-517 4-171 (184)
47 1ouv_A Conserved hypothetical 99.7 4.8E-14 1.7E-18 126.9 26.6 228 212-486 4-255 (273)
48 2q7f_A YRRB protein; TPR, prot 99.7 3.1E-15 1.1E-19 132.1 18.3 197 318-517 22-223 (243)
49 2h6f_A Protein farnesyltransfe 99.7 1.2E-14 4.2E-19 135.8 22.9 244 252-500 100-366 (382)
50 4e6h_A MRNA 3'-END-processing 99.7 2E-12 6.7E-17 129.0 40.0 433 29-488 48-576 (679)
51 2vq2_A PILW, putative fimbrial 99.7 2.4E-14 8.2E-19 124.7 23.0 198 318-517 7-212 (225)
52 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.5E-19 128.3 21.9 197 319-517 37-239 (252)
53 2q7f_A YRRB protein; TPR, prot 99.7 5.7E-15 1.9E-19 130.4 18.3 181 318-501 56-241 (243)
54 3u4t_A TPR repeat-containing p 99.6 8.2E-14 2.8E-18 125.3 25.6 245 179-428 3-262 (272)
55 3sf4_A G-protein-signaling mod 99.6 8.7E-15 3E-19 140.1 20.1 300 211-511 6-371 (406)
56 3sf4_A G-protein-signaling mod 99.6 5.5E-15 1.9E-19 141.5 18.2 292 178-470 8-364 (406)
57 4a1s_A PINS, partner of inscut 99.6 8.9E-15 3E-19 140.4 18.9 269 216-516 50-372 (411)
58 2ho1_A Type 4 fimbrial biogene 99.6 9.2E-14 3.1E-18 123.4 23.5 172 319-492 71-248 (252)
59 4e6h_A MRNA 3'-END-processing 99.6 7.9E-12 2.7E-16 124.7 39.2 217 301-519 326-573 (679)
60 3ro2_A PINS homolog, G-protein 99.6 1.3E-14 4.5E-19 134.9 17.8 270 216-517 7-333 (338)
61 3spa_A Mtrpol, DNA-directed RN 99.6 6.6E-16 2.2E-20 154.1 9.2 127 212-338 125-255 (1134)
62 2vq2_A PILW, putative fimbrial 99.6 2.2E-13 7.4E-18 118.6 23.7 208 248-493 7-222 (225)
63 4abn_A Tetratricopeptide repea 99.6 1.3E-14 4.4E-19 141.1 16.7 208 300-512 84-317 (474)
64 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 4.2E-18 124.4 22.0 217 181-408 45-269 (275)
65 4a1s_A PINS, partner of inscut 99.6 5.9E-14 2E-18 134.6 18.1 276 180-484 49-374 (411)
66 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-13 6.2E-18 115.0 18.3 167 318-487 4-175 (184)
67 3ro2_A PINS homolog, G-protein 99.6 1.3E-13 4.4E-18 128.2 17.9 276 181-485 7-335 (338)
68 3ulq_A Response regulator aspa 99.6 2E-13 6.8E-18 129.5 19.4 195 320-515 144-367 (383)
69 4gyw_A UDP-N-acetylglucosamine 99.5 2E-13 6.9E-18 137.8 20.0 164 349-515 8-173 (723)
70 3ulq_A Response regulator aspa 99.5 1.2E-12 4.2E-17 124.0 23.4 164 320-483 185-369 (383)
71 3as5_A MAMA; tetratricopeptide 99.5 4E-13 1.4E-17 112.8 16.5 163 352-517 10-174 (186)
72 2ond_A Cleavage stimulation fa 99.5 4.3E-12 1.5E-16 116.1 24.5 219 266-488 33-276 (308)
73 3nf1_A KLC 1, kinesin light ch 99.5 8.6E-14 2.9E-18 127.8 13.0 238 248-516 26-307 (311)
74 2ond_A Cleavage stimulation fa 99.5 1.7E-12 5.9E-17 118.8 20.7 214 30-278 33-270 (308)
75 4i17_A Hypothetical protein; T 99.5 1.1E-12 3.8E-17 114.3 17.8 190 318-517 6-210 (228)
76 4abn_A Tetratricopeptide repea 99.5 7.1E-13 2.4E-17 128.8 17.0 193 77-274 101-317 (474)
77 1hz4_A MALT regulatory protein 99.5 6.4E-11 2.2E-15 111.8 29.4 266 220-515 20-321 (373)
78 4i17_A Hypothetical protein; T 99.5 3.8E-12 1.3E-16 110.9 19.1 207 282-498 5-225 (228)
79 3nf1_A KLC 1, kinesin light ch 99.5 2.5E-13 8.5E-18 124.7 11.1 167 7-174 21-221 (311)
80 3q15_A PSP28, response regulat 99.4 8E-12 2.7E-16 118.1 19.8 220 295-515 112-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 103.4 19.0 169 319-490 8-181 (186)
82 3q15_A PSP28, response regulat 99.4 1.4E-10 4.7E-15 109.6 25.5 165 319-483 182-366 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.4 6.2E-12 2.1E-16 127.0 15.3 164 8-175 4-172 (723)
84 3edt_B KLC 2, kinesin light ch 99.3 9.2E-12 3.1E-16 112.4 13.8 198 319-516 43-281 (283)
85 1hz4_A MALT regulatory protein 99.3 2.9E-10 9.9E-15 107.2 24.4 163 182-344 17-199 (373)
86 3qky_A Outer membrane assembly 99.3 5E-11 1.7E-15 106.2 17.7 183 318-517 14-225 (261)
87 4ga2_A E3 SUMO-protein ligase 99.3 2.7E-12 9.1E-17 103.3 7.5 140 359-502 6-149 (150)
88 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.6E-10 9.1E-15 98.8 20.4 182 319-519 4-216 (225)
89 1qqe_A Vesicular transport pro 99.3 7.1E-11 2.4E-15 107.0 17.0 170 321-490 79-277 (292)
90 3qky_A Outer membrane assembly 99.3 8.2E-11 2.8E-15 104.8 16.5 205 281-507 12-252 (261)
91 3mv2_B Coatomer subunit epsilo 99.3 7.2E-10 2.5E-14 98.1 22.0 181 303-491 85-291 (310)
92 1qqe_A Vesicular transport pro 99.3 5.6E-11 1.9E-15 107.6 15.4 202 299-515 32-268 (292)
93 3mv2_B Coatomer subunit epsilo 99.3 1E-09 3.4E-14 97.2 22.4 175 338-517 85-283 (310)
94 3qou_A Protein YBBN; thioredox 99.3 1.3E-10 4.4E-15 104.8 16.8 176 336-515 103-283 (287)
95 2fo7_A Synthetic consensus TPR 99.3 1.4E-10 4.8E-15 91.3 15.1 128 388-517 4-133 (136)
96 2pzi_A Probable serine/threoni 99.3 2.4E-11 8.3E-16 123.5 12.5 169 330-502 402-583 (681)
97 3rjv_A Putative SEL1 repeat pr 99.3 6E-10 2.1E-14 95.4 19.1 162 348-518 16-199 (212)
98 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-11 4.5E-16 99.2 7.4 125 391-517 3-130 (150)
99 3gyz_A Chaperone protein IPGC; 99.2 7.5E-11 2.6E-15 94.2 10.7 98 420-517 35-134 (151)
100 2uy1_A Cleavage stimulation fa 99.2 1.6E-08 5.4E-13 98.1 27.9 375 59-481 6-412 (493)
101 3edt_B KLC 2, kinesin light ch 99.2 4.5E-10 1.5E-14 101.2 16.1 224 226-483 13-282 (283)
102 2vsy_A XCC0866; transferase, g 99.2 3.1E-10 1E-14 113.5 16.1 160 332-494 2-169 (568)
103 2r5s_A Uncharacterized protein 99.2 1.4E-10 4.9E-15 96.2 11.4 76 440-515 93-172 (176)
104 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.7E-14 86.1 15.8 131 352-485 3-135 (136)
105 3urz_A Uncharacterized protein 99.2 9.5E-10 3.2E-14 93.9 16.2 128 354-485 58-189 (208)
106 2pzi_A Probable serine/threoni 99.1 5.8E-10 2E-14 113.4 16.0 179 9-194 390-583 (681)
107 4gco_A Protein STI-1; structur 99.1 3.4E-10 1.1E-14 87.7 10.9 94 423-516 15-110 (126)
108 2r5s_A Uncharacterized protein 99.1 8.2E-10 2.8E-14 91.5 13.8 161 10-173 3-169 (176)
109 4gco_A Protein STI-1; structur 99.1 7.5E-10 2.6E-14 85.7 12.6 110 386-497 14-125 (126)
110 2uy1_A Cleavage stimulation fa 99.1 1.1E-07 3.6E-12 92.3 30.1 373 25-447 6-410 (493)
111 2ifu_A Gamma-SNAP; membrane fu 99.1 2.5E-09 8.5E-14 97.5 17.8 219 262-508 4-253 (307)
112 3urz_A Uncharacterized protein 99.1 7E-10 2.4E-14 94.8 13.1 156 357-517 11-187 (208)
113 3dra_A Protein farnesyltransfe 99.1 2E-08 6.8E-13 90.0 22.9 149 364-515 124-286 (306)
114 2vgx_A Chaperone SYCD; alterna 99.1 2.2E-10 7.6E-15 91.7 9.0 98 420-517 20-119 (148)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.3E-09 1.1E-13 91.0 15.5 130 351-486 7-154 (213)
116 3qou_A Protein YBBN; thioredox 99.1 2E-09 6.9E-14 97.0 14.5 160 43-206 114-282 (287)
117 3u3w_A Transcriptional activat 99.1 2.5E-08 8.7E-13 90.2 21.9 162 354-515 79-265 (293)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 1.4E-09 4.9E-14 99.2 13.4 197 296-514 3-222 (307)
119 2vsy_A XCC0866; transferase, g 99.1 2.9E-09 1E-13 106.3 16.7 146 298-447 3-154 (568)
120 3dra_A Protein farnesyltransfe 99.1 1.9E-07 6.6E-12 83.5 26.6 194 299-496 84-302 (306)
121 1a17_A Serine/threonine protei 99.0 4E-09 1.4E-13 86.3 14.0 127 387-515 15-145 (166)
122 2qfc_A PLCR protein; TPR, HTH, 99.0 1.7E-08 5.7E-13 91.4 19.2 163 352-515 77-265 (293)
123 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-08 4.3E-13 88.2 16.6 185 283-488 3-219 (225)
124 2xcb_A PCRH, regulatory protei 99.0 2.4E-09 8.3E-14 85.0 11.1 95 422-516 19-115 (142)
125 2e2e_A Formate-dependent nitri 99.0 1.5E-09 5.1E-14 90.1 10.0 121 363-486 23-148 (177)
126 3upv_A Heat shock protein STI1 99.0 3.6E-09 1.2E-13 82.1 11.3 97 421-517 4-102 (126)
127 2vyi_A SGTA protein; chaperone 99.0 7.5E-09 2.6E-13 80.7 12.9 118 385-504 12-131 (131)
128 3gyz_A Chaperone protein IPGC; 99.0 1.7E-09 5.7E-14 86.3 8.8 107 34-142 23-133 (151)
129 2lni_A Stress-induced-phosphop 99.0 6.9E-09 2.4E-13 81.2 12.4 116 385-502 16-133 (133)
130 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-07 4.5E-12 80.7 21.0 170 233-414 5-197 (212)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.3E-08 7.7E-13 85.7 16.3 124 321-447 8-147 (213)
132 1p5q_A FKBP52, FK506-binding p 99.0 5.2E-09 1.8E-13 96.6 12.8 95 421-515 196-293 (336)
133 1na0_A Designed protein CTPR3; 99.0 1.4E-08 4.6E-13 78.4 13.1 115 385-501 9-125 (125)
134 1hxi_A PEX5, peroxisome target 98.9 3.4E-09 1.2E-13 81.3 9.2 95 423-517 19-115 (121)
135 2c2l_A CHIP, carboxy terminus 98.9 2.8E-09 9.5E-14 95.7 9.7 192 318-516 3-199 (281)
136 2vgx_A Chaperone SYCD; alterna 98.9 2.5E-09 8.7E-14 85.4 8.3 107 384-492 20-128 (148)
137 2kck_A TPR repeat; tetratricop 98.9 8.3E-09 2.8E-13 77.9 10.8 99 420-518 5-108 (112)
138 2fbn_A 70 kDa peptidylprolyl i 98.9 1.1E-09 3.7E-14 92.9 6.4 169 328-517 13-187 (198)
139 3sz7_A HSC70 cochaperone (SGT) 98.9 8.6E-09 2.9E-13 84.2 11.1 111 384-496 10-122 (164)
140 4gcn_A Protein STI-1; structur 98.9 6.6E-09 2.3E-13 80.5 9.6 95 422-516 9-112 (127)
141 3q49_B STIP1 homology and U bo 98.9 1.9E-08 6.6E-13 79.2 12.1 99 419-517 7-107 (137)
142 4f3v_A ESX-1 secretion system 98.9 2.7E-08 9.1E-13 86.9 13.4 122 392-516 109-237 (282)
143 3upv_A Heat shock protein STI1 98.8 3E-08 1E-12 76.7 11.6 112 386-499 5-124 (126)
144 2e2e_A Formate-dependent nitri 98.8 3.3E-08 1.1E-12 81.9 12.5 123 395-519 20-147 (177)
145 2xcb_A PCRH, regulatory protei 98.8 2.4E-08 8E-13 79.3 11.0 110 385-496 18-129 (142)
146 1elw_A TPR1-domain of HOP; HOP 98.8 6.5E-08 2.2E-12 73.6 13.0 107 388-496 7-115 (118)
147 1elw_A TPR1-domain of HOP; HOP 98.8 4.5E-08 1.5E-12 74.5 11.9 98 420-517 3-102 (118)
148 3u3w_A Transcriptional activat 98.8 6.2E-07 2.1E-11 81.0 21.3 159 325-483 81-267 (293)
149 4f3v_A ESX-1 secretion system 98.8 9.5E-08 3.2E-12 83.4 14.9 140 352-496 104-250 (282)
150 2lni_A Stress-induced-phosphop 98.8 3.5E-08 1.2E-12 77.1 11.3 100 418-517 13-114 (133)
151 3sz7_A HSC70 cochaperone (SGT) 98.8 5.1E-08 1.8E-12 79.5 12.3 98 420-517 10-109 (164)
152 2qfc_A PLCR protein; TPR, HTH, 98.8 3E-07 1E-11 83.1 18.3 163 321-483 77-267 (293)
153 3gw4_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 80.6 14.4 93 423-515 68-175 (203)
154 2hr2_A Hypothetical protein; a 98.8 3.9E-08 1.3E-12 77.4 10.0 93 424-516 14-131 (159)
155 1na0_A Designed protein CTPR3; 98.8 7.5E-08 2.6E-12 74.1 11.7 97 421-517 9-107 (125)
156 2c2l_A CHIP, carboxy terminus 98.8 4.4E-08 1.5E-12 87.8 10.9 97 10-107 1-101 (281)
157 2vyi_A SGTA protein; chaperone 98.7 7.4E-08 2.5E-12 74.9 10.8 99 419-517 10-110 (131)
158 2dba_A Smooth muscle cell asso 98.7 2.6E-07 8.8E-12 73.6 14.1 112 384-498 27-144 (148)
159 2dba_A Smooth muscle cell asso 98.7 1.3E-07 4.5E-12 75.4 11.9 100 418-517 25-129 (148)
160 2xev_A YBGF; tetratricopeptide 98.7 9.8E-08 3.3E-12 74.1 10.8 89 428-516 9-105 (129)
161 3q49_B STIP1 homology and U bo 98.7 1.1E-07 3.6E-12 74.8 11.1 114 383-498 7-127 (137)
162 3q7a_A Farnesyltransferase alp 98.7 2.1E-05 7.2E-10 71.1 27.1 169 264-437 69-258 (349)
163 3q7a_A Farnesyltransferase alp 98.7 1.3E-06 4.4E-11 79.1 19.1 175 17-194 58-257 (349)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.2E-07 4.1E-12 91.4 13.3 96 421-516 317-415 (457)
165 1a17_A Serine/threonine protei 98.7 4.2E-07 1.4E-11 74.0 14.8 129 351-482 14-146 (166)
166 3dss_A Geranylgeranyl transfer 98.7 6.1E-06 2.1E-10 74.3 22.5 179 336-517 91-305 (331)
167 3rkv_A Putative peptidylprolyl 98.7 9.8E-08 3.4E-12 77.6 9.4 62 455-516 65-126 (162)
168 1p5q_A FKBP52, FK506-binding p 98.7 6.6E-08 2.2E-12 89.1 9.2 140 25-167 125-283 (336)
169 2if4_A ATFKBP42; FKBP-like, al 98.6 8.7E-08 3E-12 88.3 9.6 150 350-519 179-331 (338)
170 1elr_A TPR2A-domain of HOP; HO 98.6 1E-07 3.6E-12 74.0 8.7 110 386-498 5-123 (131)
171 1wao_1 Serine/threonine protei 98.6 7E-08 2.4E-12 93.4 9.2 118 392-511 13-134 (477)
172 3k9i_A BH0479 protein; putativ 98.6 3.1E-08 1.1E-12 75.5 4.9 63 454-516 28-90 (117)
173 1hxi_A PEX5, peroxisome target 98.6 1.8E-07 6.1E-12 71.6 9.2 98 388-487 20-119 (121)
174 2xev_A YBGF; tetratricopeptide 98.6 8E-07 2.7E-11 68.8 13.0 107 390-498 7-121 (129)
175 3rkv_A Putative peptidylprolyl 98.6 1.6E-07 5.4E-12 76.4 9.0 81 420-500 62-145 (162)
176 1elr_A TPR2A-domain of HOP; HO 98.6 2.9E-07 1E-11 71.4 9.8 97 421-517 4-109 (131)
177 2fbn_A 70 kDa peptidylprolyl i 98.6 1.4E-07 4.7E-12 79.7 8.2 144 21-167 12-175 (198)
178 2kck_A TPR repeat; tetratricop 98.6 2.3E-07 7.8E-12 69.7 8.5 98 9-107 2-106 (112)
179 4gcn_A Protein STI-1; structur 98.6 3.6E-07 1.2E-11 70.6 9.7 92 14-106 9-111 (127)
180 3gw4_A Uncharacterized protein 98.6 5.2E-07 1.8E-11 76.4 11.5 83 59-141 4-94 (203)
181 3k9i_A BH0479 protein; putativ 98.5 8.4E-08 2.9E-12 73.0 5.6 94 398-492 3-100 (117)
182 1ihg_A Cyclophilin 40; ppiase 98.5 4.2E-07 1.4E-11 84.7 11.3 138 351-509 224-363 (370)
183 3ro3_A PINS homolog, G-protein 98.5 3.8E-07 1.3E-11 73.9 9.7 94 423-516 51-158 (164)
184 3ma5_A Tetratricopeptide repea 98.5 6E-07 2E-11 65.9 9.1 67 450-516 4-70 (100)
185 1dce_A Protein (RAB geranylger 98.5 8.5E-06 2.9E-10 80.3 20.0 168 335-505 45-244 (567)
186 2l6j_A TPR repeat-containing p 98.5 4.9E-08 1.7E-12 73.5 3.0 93 420-512 3-103 (111)
187 3dss_A Geranylgeranyl transfer 98.5 8.3E-06 2.8E-10 73.4 17.9 194 331-531 41-278 (331)
188 1wao_1 Serine/threonine protei 98.5 7.7E-07 2.6E-11 86.1 11.9 114 361-477 17-134 (477)
189 4b4t_Q 26S proteasome regulato 98.5 1.4E-06 4.7E-11 83.7 13.5 164 352-515 57-244 (434)
190 3n71_A Histone lysine methyltr 98.5 1E-06 3.5E-11 84.6 11.7 130 394-523 318-471 (490)
191 1zu2_A Mitochondrial import re 98.4 1.9E-07 6.6E-12 73.2 4.8 49 469-517 62-121 (158)
192 1dce_A Protein (RAB geranylger 98.4 2.6E-06 8.9E-11 84.0 13.8 164 363-531 42-234 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.4 1.3E-06 4.3E-11 80.6 10.5 153 319-488 179-334 (338)
194 1na3_A Designed protein CTPR2; 98.4 1.5E-06 5E-11 62.4 8.8 81 421-501 9-91 (91)
195 2hr2_A Hypothetical protein; a 98.4 1.1E-06 3.8E-11 69.1 8.1 73 423-495 59-144 (159)
196 2kat_A Uncharacterized protein 98.4 9.2E-07 3.1E-11 66.9 7.4 64 452-515 18-81 (115)
197 3bee_A Putative YFRE protein; 98.4 2.9E-06 1E-10 60.7 9.3 70 450-519 3-75 (93)
198 3ro3_A PINS homolog, G-protein 98.4 2.1E-06 7.3E-11 69.3 9.8 133 352-484 11-160 (164)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-06 3.9E-11 84.6 8.9 141 25-168 246-405 (457)
200 4b4t_Q 26S proteasome regulato 98.3 7.2E-06 2.4E-10 78.7 14.3 159 358-516 12-204 (434)
201 1klx_A Cysteine rich protein B 98.3 8E-06 2.8E-10 63.9 11.4 110 400-517 10-127 (138)
202 1ihg_A Cyclophilin 40; ppiase 98.3 2.9E-06 9.9E-11 79.0 9.4 66 452-517 272-337 (370)
203 2l6j_A TPR repeat-containing p 98.2 6.3E-06 2.1E-10 61.6 8.6 67 452-518 3-69 (111)
204 1zu2_A Mitochondrial import re 98.2 2.3E-06 7.7E-11 67.2 5.7 92 398-491 15-129 (158)
205 1na3_A Designed protein CTPR2; 98.1 1.3E-05 4.4E-10 57.3 8.0 66 452-517 8-73 (91)
206 2kat_A Uncharacterized protein 98.1 9E-06 3.1E-10 61.3 7.3 81 403-485 3-85 (115)
207 2kc7_A BFR218_protein; tetratr 98.0 7E-06 2.4E-10 59.9 5.2 81 427-515 6-89 (99)
208 1klx_A Cysteine rich protein B 98.0 0.0001 3.5E-09 57.5 12.1 112 364-484 9-128 (138)
209 3n71_A Histone lysine methyltr 97.9 2.5E-05 8.6E-10 75.0 7.9 83 23-105 319-420 (490)
210 2kc7_A BFR218_protein; tetratr 97.9 4.7E-05 1.6E-09 55.4 7.7 62 458-519 5-67 (99)
211 3ma5_A Tetratricopeptide repea 97.8 2.7E-05 9.1E-10 56.9 5.3 64 9-73 3-67 (100)
212 3qww_A SET and MYND domain-con 97.8 4.8E-05 1.6E-09 71.8 8.0 82 434-515 311-410 (433)
213 3qwp_A SET and MYND domain-con 97.7 0.00017 5.8E-09 68.2 9.8 88 428-515 294-399 (429)
214 3qww_A SET and MYND domain-con 97.6 0.00022 7.4E-09 67.4 9.9 96 397-492 310-426 (433)
215 3ly7_A Transcriptional activat 97.6 0.0011 3.8E-08 59.9 13.6 132 9-142 190-339 (372)
216 3ly7_A Transcriptional activat 97.6 0.0031 1.1E-07 57.0 16.2 66 451-517 275-340 (372)
217 1qsa_A Protein (soluble lytic 97.6 0.077 2.6E-06 52.3 28.3 114 364-481 228-347 (618)
218 3lvg_A Clathrin heavy chain 1; 97.5 4.4E-06 1.5E-10 76.7 -3.2 119 44-174 52-170 (624)
219 3qwp_A SET and MYND domain-con 97.5 0.00048 1.6E-08 65.1 10.2 100 393-492 295-415 (429)
220 1wy6_A Hypothetical protein ST 97.4 0.01 3.6E-07 44.0 14.3 140 361-519 18-157 (172)
221 3u64_A Protein TP_0956; tetrat 97.4 0.00055 1.9E-08 59.2 8.9 87 438-524 180-277 (301)
222 1pc2_A Mitochondria fission pr 97.4 0.00034 1.2E-08 54.2 6.7 92 399-492 12-110 (152)
223 1pc2_A Mitochondria fission pr 97.4 0.0007 2.4E-08 52.4 8.3 67 450-516 29-100 (152)
224 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0009 3.1E-08 49.0 8.7 73 422-494 6-87 (104)
225 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00087 3E-08 49.0 8.2 66 452-517 4-76 (104)
226 3bee_A Putative YFRE protein; 97.4 0.0016 5.6E-08 46.2 9.3 70 418-487 3-77 (93)
227 3lvg_A Clathrin heavy chain 1; 97.0 2.9E-05 1E-09 71.4 -3.7 244 11-270 52-325 (624)
228 3mkq_A Coatomer beta'-subunit; 97.0 0.042 1.4E-06 57.2 19.3 151 158-343 609-760 (814)
229 3mkq_A Coatomer beta'-subunit; 96.9 0.058 2E-06 56.1 20.2 101 328-446 661-761 (814)
230 1nzn_A CGI-135 protein, fissio 96.8 0.023 7.8E-07 42.2 11.3 92 400-493 16-114 (126)
231 1nzn_A CGI-135 protein, fissio 96.4 0.012 3.9E-07 43.8 7.2 68 450-517 32-104 (126)
232 4h7y_A Dual specificity protei 96.4 0.018 6.1E-07 43.9 8.0 106 382-489 10-130 (161)
233 3mkq_B Coatomer subunit alpha; 96.3 0.28 9.4E-06 39.0 14.9 128 328-479 14-141 (177)
234 3u64_A Protein TP_0956; tetrat 96.2 0.039 1.3E-06 47.8 10.3 82 28-110 178-272 (301)
235 3mkq_B Coatomer subunit alpha; 96.2 0.19 6.5E-06 40.0 13.4 46 58-105 16-61 (177)
236 4gns_B Protein CSD3, chitin bi 95.9 0.038 1.3E-06 55.5 10.5 54 461-514 345-398 (754)
237 1y8m_A FIS1; mitochondria, unk 95.7 0.13 4.3E-06 39.0 9.9 75 417-491 35-115 (144)
238 4h7y_A Dual specificity protei 95.6 0.12 4.2E-06 39.4 9.6 51 467-517 74-124 (161)
239 3ffl_A Anaphase-promoting comp 95.4 0.14 4.7E-06 40.0 9.6 129 321-463 22-165 (167)
240 3o48_A Mitochondria fission 1 95.4 0.048 1.6E-06 40.7 6.7 74 418-491 37-116 (134)
241 4ady_A RPN2, 26S proteasome re 95.2 3.3 0.00011 42.7 34.7 252 224-480 384-656 (963)
242 1wy6_A Hypothetical protein ST 95.1 0.75 2.6E-05 34.3 12.8 68 248-316 90-157 (172)
243 4ady_A RPN2, 26S proteasome re 94.9 4 0.00014 42.1 32.9 400 50-460 233-668 (963)
244 3ffl_A Anaphase-promoting comp 94.8 0.055 1.9E-06 42.2 5.8 27 488-514 123-149 (167)
245 1qsa_A Protein (soluble lytic 94.5 4.1 0.00014 40.2 36.0 240 49-312 74-347 (618)
246 1y8m_A FIS1; mitochondria, unk 94.4 0.93 3.2E-05 34.3 11.4 68 450-517 36-107 (144)
247 4fhn_B Nucleoporin NUP120; pro 94.3 1.7 5.9E-05 46.8 18.2 82 114-195 900-987 (1139)
248 2ff4_A Probable regulatory pro 94.1 0.14 4.7E-06 47.6 8.1 65 458-522 176-245 (388)
249 3o48_A Mitochondria fission 1 93.9 0.5 1.7E-05 35.3 9.0 67 450-516 37-107 (134)
250 4b4t_P 26S proteasome regulato 92.2 7.9 0.00027 36.5 19.6 96 182-277 140-246 (445)
251 4gns_B Protein CSD3, chitin bi 91.3 2.2 7.5E-05 43.0 12.4 54 393-448 345-398 (754)
252 1v54_E Cytochrome C oxidase po 90.9 1.2 4E-05 31.2 7.0 63 365-429 25-87 (109)
253 2uwj_G Type III export protein 90.8 3 0.0001 29.0 10.6 99 16-118 9-107 (115)
254 3txn_A 26S proteasome regulato 90.7 10 0.00034 34.9 17.9 58 390-447 104-165 (394)
255 2p58_C Putative type III secre 90.6 3.2 0.00011 29.0 10.6 99 16-118 10-108 (116)
256 1zbp_A Hypothetical protein VP 90.1 3.7 0.00013 35.1 11.0 120 359-489 6-136 (273)
257 2wpv_A GET4, UPF0363 protein Y 89.8 10 0.00035 33.5 22.8 83 317-414 132-217 (312)
258 2ff4_A Probable regulatory pro 89.2 4 0.00014 37.7 11.8 71 353-424 174-248 (388)
259 4fhn_B Nucleoporin NUP120; pro 89.2 14 0.00047 39.9 17.5 186 289-482 817-1050(1139)
260 1zbp_A Hypothetical protein VP 89.2 1.1 3.7E-05 38.3 7.0 55 431-485 7-63 (273)
261 2wpv_A GET4, UPF0363 protein Y 87.5 14 0.00049 32.5 18.2 127 49-186 35-172 (312)
262 2y69_E Cytochrome C oxidase su 87.0 2.8 9.5E-05 31.2 7.0 63 365-429 68-130 (152)
263 1v54_E Cytochrome C oxidase po 86.2 5.5 0.00019 27.9 7.8 49 94-142 26-74 (109)
264 2uwj_G Type III export protein 85.5 7.3 0.00025 27.2 9.6 89 125-218 18-106 (115)
265 3ltj_A Alpharep-4; protein eng 85.5 13 0.00046 30.1 17.3 44 49-92 30-73 (201)
266 2p58_C Putative type III secre 85.1 7.8 0.00027 27.1 9.8 89 125-218 19-107 (116)
267 3esl_A Checkpoint serine/threo 84.6 11 0.00037 30.6 10.1 47 437-483 95-145 (202)
268 4b4t_P 26S proteasome regulato 83.7 29 0.001 32.6 22.8 97 351-447 138-244 (445)
269 3ltm_A Alpha-REP4; protein eng 83.5 17 0.00058 29.7 16.9 49 44-93 31-79 (211)
270 3ltm_A Alpha-REP4; protein eng 81.8 20 0.00068 29.3 18.0 119 150-277 66-184 (211)
271 3lpz_A GET4 (YOR164C homolog); 79.0 35 0.0012 30.4 23.2 113 49-172 37-160 (336)
272 3ltj_A Alpharep-4; protein eng 78.9 24 0.00082 28.5 18.1 60 212-276 119-178 (201)
273 2y69_E Cytochrome C oxidase su 78.9 18 0.00061 27.0 8.6 59 96-155 71-129 (152)
274 4b4t_R RPN7, 26S proteasome re 78.2 7.9 0.00027 36.3 8.7 94 49-142 133-237 (429)
275 4a1g_A Mitotic checkpoint seri 77.3 23 0.00077 27.3 9.6 49 472-520 84-134 (152)
276 4b4t_R RPN7, 26S proteasome re 77.0 13 0.00046 34.7 9.9 96 320-415 132-238 (429)
277 2qx5_A Nucleoporin NIC96; mRNA 75.2 69 0.0024 31.8 18.0 41 150-191 155-198 (661)
278 2wvi_A Mitotic checkpoint seri 73.3 31 0.0011 26.9 9.4 31 453-483 96-126 (164)
279 3esl_A Checkpoint serine/threo 72.4 37 0.0013 27.5 11.5 84 65-149 62-151 (202)
280 3txn_A 26S proteasome regulato 71.2 63 0.0022 29.6 22.5 291 214-518 19-345 (394)
281 3lpz_A GET4 (YOR164C homolog); 68.9 64 0.0022 28.8 28.1 83 316-413 133-215 (336)
282 1ya0_A SMG-7 transcript varian 68.0 18 0.00061 34.6 8.3 56 459-514 158-213 (497)
283 4b4t_S RPN3, 26S proteasome re 66.1 17 0.00058 34.6 7.5 25 387-411 233-257 (523)
284 4gq2_M Nucleoporin NUP120; bet 64.7 81 0.0028 33.2 13.3 49 114-162 898-950 (950)
285 3bqo_A Telomeric repeat-bindin 60.9 31 0.0011 27.7 6.9 71 437-507 94-171 (211)
286 3mv2_A Coatomer subunit alpha; 59.7 89 0.003 27.5 10.3 49 455-517 209-257 (325)
287 2zu6_B Programmed cell death p 59.6 80 0.0027 27.8 10.3 65 323-387 170-239 (307)
288 4gq2_M Nucleoporin NUP120; bet 55.3 74 0.0025 33.5 11.0 52 391-448 816-867 (950)
289 2d2s_A Exocyst complex compone 54.9 60 0.002 27.2 8.4 23 84-106 24-46 (235)
290 1wdy_A 2-5A-dependent ribonucl 54.8 75 0.0026 27.0 9.7 15 58-72 47-61 (285)
291 4a1g_A Mitotic checkpoint seri 53.6 74 0.0025 24.4 10.9 52 97-148 84-136 (152)
292 4aez_C MAD3, mitotic spindle c 53.3 45 0.0015 27.6 7.1 33 451-483 148-180 (223)
293 1oyz_A Hypothetical protein YI 53.0 1.1E+02 0.0037 26.2 22.0 18 247-264 204-221 (280)
294 2d2s_A Exocyst complex compone 52.4 52 0.0018 27.6 7.6 29 418-446 88-116 (235)
295 2wvi_A Mitotic checkpoint seri 51.2 85 0.0029 24.5 11.0 84 64-150 47-133 (164)
296 3ctd_A Putative ATPase, AAA fa 51.0 1E+02 0.0034 25.2 9.1 70 76-145 30-107 (213)
297 2ion_A PDCD4, programmed cell 50.9 82 0.0028 24.2 8.3 65 322-386 12-81 (152)
298 2r9g_A AAA ATPase, central reg 49.8 1E+02 0.0035 24.9 10.2 67 79-146 12-86 (204)
299 1oyz_A Hypothetical protein YI 49.2 1.2E+02 0.0042 25.8 22.5 18 247-264 140-157 (280)
300 1wdy_A 2-5A-dependent ribonucl 48.1 82 0.0028 26.7 8.9 14 330-343 227-240 (285)
301 3kea_A K1L; tropism, ANK repea 47.2 1.4E+02 0.0047 25.7 10.1 79 157-239 101-183 (285)
302 2nsz_A Programmed cell death p 45.7 89 0.0031 23.1 9.5 65 322-386 10-79 (129)
303 4aez_C MAD3, mitotic spindle c 45.6 1.3E+02 0.0044 24.9 9.1 117 28-147 50-184 (223)
304 2zu6_B Programmed cell death p 45.3 1.4E+02 0.0047 26.3 9.5 73 352-426 168-242 (307)
305 3bge_A Predicted ATPase; struc 44.7 1.2E+02 0.0042 24.4 8.5 45 184-228 9-56 (201)
306 2r9g_A AAA ATPase, central reg 44.1 1.3E+02 0.0043 24.4 9.7 61 184-245 16-84 (204)
307 3eiq_C Programmed cell death p 43.5 1.8E+02 0.0063 26.1 15.2 65 217-285 220-289 (358)
308 4b4t_S RPN3, 26S proteasome re 42.5 62 0.0021 30.9 7.1 68 421-488 231-305 (523)
309 3bge_A Predicted ATPase; struc 41.8 1.4E+02 0.0047 24.1 8.6 48 80-127 6-56 (201)
310 2crb_A Nuclear receptor bindin 39.9 38 0.0013 23.1 3.8 23 491-513 19-41 (97)
311 3pvs_A Replication-associated 39.1 2.5E+02 0.0084 26.3 14.5 43 81-123 255-300 (447)
312 3ctd_A Putative ATPase, AAA fa 38.0 1.6E+02 0.0056 23.9 8.8 65 180-244 33-105 (213)
313 2xig_A Ferric uptake regulatio 36.9 1.3E+02 0.0045 22.8 7.3 61 374-436 16-76 (150)
314 2ijq_A Hypothetical protein; s 35.3 1.3E+02 0.0043 23.4 6.7 18 466-483 45-62 (161)
315 3ygs_P Procaspase 9; apoptosis 34.7 54 0.0019 22.8 4.3 38 162-199 51-88 (97)
316 3jxi_A Vanilloid receptor-rela 34.5 40 0.0014 28.5 4.5 27 86-112 10-36 (260)
317 1mzb_A Ferric uptake regulatio 33.4 1.3E+02 0.0045 22.3 6.6 60 375-436 8-68 (136)
318 2w57_A Ferric uptake regulatio 32.5 1.4E+02 0.0046 22.8 6.7 61 374-436 6-67 (150)
319 2cfu_A SDSA1; SDS-hydrolase, l 32.1 95 0.0033 30.9 7.1 63 438-503 437-499 (658)
320 3kea_A K1L; tropism, ANK repea 30.9 2.5E+02 0.0086 23.9 9.2 180 58-251 39-225 (285)
321 2fe3_A Peroxide operon regulat 30.7 96 0.0033 23.4 5.5 61 103-164 12-72 (145)
322 3hra_A Ankyrin repeat family p 30.3 2E+02 0.0068 22.6 8.5 17 58-74 13-29 (201)
323 3t8k_A Uncharacterized protein 30.0 2E+02 0.0069 22.6 8.9 27 188-214 44-70 (186)
324 3jxi_A Vanilloid receptor-rela 29.5 53 0.0018 27.7 4.4 20 294-313 232-251 (260)
325 2fe3_A Peroxide operon regulat 28.1 1.9E+02 0.0064 21.8 6.8 60 204-264 12-71 (145)
326 2ion_A PDCD4, programmed cell 27.4 2.1E+02 0.0071 21.9 8.1 59 152-210 13-76 (152)
327 2p1h_A APAF-1, apoptotic prote 27.4 1.5E+02 0.0051 20.2 6.9 60 133-196 25-84 (94)
328 1ya0_A SMG-7 transcript varian 27.3 2.3E+02 0.0079 27.0 8.5 77 387-465 154-232 (497)
329 1bpo_A Protein (clathrin); cla 26.6 4.1E+02 0.014 25.0 14.4 109 127-239 343-454 (494)
330 3ygs_P Procaspase 9; apoptosis 26.4 72 0.0025 22.1 3.7 37 61-97 51-87 (97)
331 1wgl_A TOLL-interacting protei 25.8 68 0.0023 19.8 3.1 46 475-521 12-57 (59)
332 3eu9_A Huntingtin-interacting 25.4 1.1E+02 0.0038 25.0 5.6 217 20-246 13-239 (240)
333 3eyy_A Putative iron uptake re 25.2 1.1E+02 0.0038 23.1 5.0 58 375-435 9-66 (145)
334 2ko4_A Mediator of RNA polymer 25.1 1.1E+02 0.0038 20.1 3.9 38 67-104 23-62 (81)
335 3qil_A Clathrin heavy chain 1; 25.0 16 0.00056 26.5 0.2 70 57-134 16-85 (125)
336 4ets_A Ferric uptake regulatio 24.6 2.4E+02 0.0083 21.7 7.0 57 206-263 25-83 (162)
337 3ph0_C ASCG; type III secretio 23.8 1.3E+02 0.0045 18.3 4.7 45 22-67 15-60 (61)
338 4ets_A Ferric uptake regulatio 23.8 2.5E+02 0.0086 21.6 7.4 70 94-164 13-85 (162)
339 1k1a_A B-cell lymphoma 3-encod 23.3 3E+02 0.01 22.3 9.9 86 85-174 13-102 (241)
340 3ljn_A Hypothetical protein; a 22.9 2.7E+02 0.0092 24.7 8.1 14 260-273 252-265 (364)
341 3eiq_C Programmed cell death p 22.8 4.2E+02 0.014 23.8 19.2 68 322-389 220-292 (358)
342 2chq_A Replication factor C sm 22.5 3.7E+02 0.013 23.1 13.3 19 92-110 241-260 (319)
343 2nsz_A Programmed cell death p 22.5 2.3E+02 0.008 20.8 9.4 60 152-211 11-75 (129)
344 2rpa_A Katanin P60 ATPase-cont 22.3 1E+02 0.0035 20.4 3.5 22 493-514 18-39 (78)
345 4gq4_A Menin; tumor suppressor 21.9 2.2E+02 0.0076 26.1 6.6 101 22-123 264-390 (489)
346 2ijq_A Hypothetical protein; s 21.8 2.8E+02 0.0097 21.5 7.0 52 90-141 44-103 (161)
347 2qx5_A Nucleoporin NIC96; mRNA 21.6 6E+02 0.021 25.2 23.4 23 326-348 450-472 (661)
348 2fu4_A Ferric uptake regulatio 21.6 1.8E+02 0.006 19.0 6.6 60 375-436 7-67 (83)
349 2b7e_A PRE-mRNA processing pro 21.3 92 0.0031 19.3 2.9 29 196-224 3-31 (59)
350 3bqo_A Telomeric repeat-bindin 21.0 1.1E+02 0.0036 24.7 4.0 46 29-74 94-144 (211)
351 3pvs_A Replication-associated 20.3 5.3E+02 0.018 24.0 12.8 23 262-284 268-290 (447)
352 2fv2_A RCD1 required for cell 20.1 3.7E+02 0.013 22.8 7.2 56 392-447 180-235 (268)
353 3i5p_A Nucleoporin NUP170; hel 20.1 5.8E+02 0.02 24.4 12.1 68 449-516 174-246 (525)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-41 Score=342.14 Aligned_cols=449 Identities=9% Similarity=-0.058 Sum_probs=384.2
Q ss_pred hhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHH
Q 044352 57 YAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVH 136 (544)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 136 (544)
+...|....+...+...+.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777888888888878899999999999999999999999999986 5678889999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCC-------------------ChhhHHHHHHHHhccCChhH
Q 044352 137 AVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFER-------------------DVVSWTSMISGYCNVSKVDE 197 (544)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~ 197 (544)
+.+... +++..+++.++.+|.+.|++++|..+|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988654 688899999999999999999999999965443 37899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHH--------------------------------------HHHHHHhcCChHHHHHHHHH
Q 044352 198 AVVLFERMKLEGLEPNQFTYNA--------------------------------------IIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~ 239 (544)
|.+.|+++.+.+ +.+...+.. ++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999998764 222333322 24456678899999999999
Q ss_pred hhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCH
Q 044352 240 MTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDV 319 (544)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (544)
+.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+.
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 9866 6899999999999999999999999999999876 4577889999999999999999999999998765 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044352 320 FTGSALIDMYSKCGSLKDARTLFEITR---IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACS 396 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (544)
.++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999775 3567899999999999999999999999999863 558889999999999
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC--hhHHHHHHHHHhhcC
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-------MYVT--NSMAGAFRNGCNIHG 467 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~g 467 (544)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 45578899999999999999999999999873 3566 678999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 468 RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++++..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-42 Score=346.63 Aligned_cols=481 Identities=10% Similarity=-0.035 Sum_probs=411.9
Q ss_pred CCcchHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHHHH
Q 044352 11 LSVNYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVMAS 88 (544)
Q Consensus 11 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~ 88 (544)
++...|..++..+.+.|++++|..+++++++..|+.. .+..++.+|.+.|++++|+.+|+.+. ++++.+++.++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 4566789999999999999999999999997766777 88899999999999999999999984 78899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhc---------------ccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 044352 89 AFTGNFQEAIGYFSLMREF---------------IYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNA 153 (544)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 153 (544)
.+.|++++|+.+|+++... +.+++..+|..++.+|.+.|++++|..+|+++.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999954321 223467899999999999999999999999999875 455666666
Q ss_pred HHHHHHhCCCHHHHHHH---HhhccCC----ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 044352 154 LIDMYSKCGLLCSARRV---FHGMFER----DVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYAR 226 (544)
Q Consensus 154 l~~~~~~~~~~~~A~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (544)
+...+...+..+.+... +..+... ....|+.++..|.+.|++++|.++|+++.+. +++..++..++..|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 66655444333222211 2222222 2345666788889999999999999998865 6889999999999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 044352 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREI 306 (544)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (544)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998775 5578889999999999999999999999998654 56788899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044352 307 HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA 383 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 383 (544)
|+.+.+.. +.+..++..++.+|.+.|++++|.++|+++.. .+..+|..++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99998875 44688999999999999999999999997653 477899999999999999999999999999863 55
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh---CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHH
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERY---GVKIS--KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMA 456 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 456 (544)
+..++..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 78999999999999999999999999997753 44666 7899999999999999999999999874 45578899
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
..++.+|...|++++|...|+++++++|+++.++..++.+|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.4e-30 Score=243.76 Aligned_cols=374 Identities=11% Similarity=0.081 Sum_probs=258.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 044352 85 VMASAFTGNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGL 163 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (544)
...+.+.|++++|++.++++.+. .| +...+..+...+...|++++|...++...+.. |.+..++..+..++.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44556677777777777777663 23 33445555556666777777777776666654 4556666666666666666
Q ss_pred HHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 044352 164 LCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRM 240 (544)
Q Consensus 164 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (544)
+++|...|+++.. .+..+|..+..++...|++++|...|.++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666533 233455666666666666666666666655542 222334444555555556666666666655
Q ss_pred hhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHH
Q 044352 241 TAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVF 320 (544)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (544)
.+.. +.+..+|..+...+...|++++|...|+++++. + +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~-p~~~~ 204 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------D-PNFLD 204 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------C-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------C-CCcHH
Confidence 5442 233455555555566666666666665555543 2 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITR---IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH 397 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (544)
.+..+...+...|++++|...+++.. ..+..++..++.++...|++++|...++++.+.. +.+..++..+..++.+
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443 2345677788888888888888888888888852 4457788888889999
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHH
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
.|++++|...++++.+. .+.+..++..++..+.+.|++++|.+.++++. .+.+..++..++.++.+.|++++|+..
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874 46678888899999999999999999998874 344577889999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 476 GEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 476 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
|+++++++|+++.++..++.++...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999888764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.2e-28 Score=233.57 Aligned_cols=352 Identities=12% Similarity=0.070 Sum_probs=250.9
Q ss_pred HHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCH
Q 044352 19 LLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNF 94 (544)
Q Consensus 19 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 94 (544)
++..+.+.|++++|.+.+..+++. |.+.. ++..++..+...|++++|...++... |.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTG-VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456677899999999999999988 66666 88889999999999999999998765 66778899999999999999
Q ss_pred HHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhh
Q 044352 95 QEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHG 173 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 173 (544)
++|+..|+++.+. .|+ ..+|..+..++...|++++|...++.+.+.+ |.+...+..+..++...|++++|...|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999874 444 5578888889999999999999999988875 45566777788888888888888888887
Q ss_pred ccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHh
Q 044352 174 MFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLV 250 (544)
Q Consensus 174 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 250 (544)
+.+ .+..+|..+...+...|++++|...|+++...+ +.+...+..+...+...|++++|...|++..+.. +.+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 754 345677778888888888888888888877664 3345667777777778888888888887776653 33566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044352 251 TWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYS 330 (544)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (544)
++..+..++...|++++|...|+++++.+ +.+..++..+..++...|++++|...++.+.+.. +.+..++..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 77777777888888888888887777653 2234455555556666666666666666555543 234444445555555
Q ss_pred hcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044352 331 KCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLE 378 (544)
Q Consensus 331 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 378 (544)
+.|++++|...++++.. .+..++..++.++...|++++|...++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555444432 1233444444444444444444444444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=237.62 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhcccccCHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhh
Q 044352 95 QEAIGYFSLMREFIYRCNKF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHG 173 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 173 (544)
..+..+.+++.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555666777766655443 57888899999999999999999999999999999999999988877653221
Q ss_pred ccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHH
Q 044352 174 MFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWN 253 (544)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (544)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2334456777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044352 254 AMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSK 331 (544)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (544)
.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777664
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-26 Score=230.22 Aligned_cols=263 Identities=9% Similarity=-0.093 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHc---CCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 044352 250 VTWNAMISGFAQ---SKRENEALKLFKGMLV-----SGI--------KPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 250 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (544)
..+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|+++.|...++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334334444443 6666666666666665 211 112334555556666666666666666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 314 GLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLIS 390 (544)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 390 (544)
... ..++..++.++...|++++|...++.+.. .+...+..+...+...|++++|...++++.... +.+..++..
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 343 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQ 343 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHH
Confidence 433 55666666666777777777666665543 345566667777777777777777777776642 334566666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHH
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNG 462 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~ 462 (544)
+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++. ..++ ...+..++..
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 777777777777777777777653 23345666677777777777777777776652 1111 2366666777
Q ss_pred Hhh---cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 463 CNI---HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 463 ~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+.. .|++++|+..++++++.+|+++.++..++.++.+.|++++|...++++++..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 777 7777777777777777777777777777777777777777777777776654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-26 Score=224.40 Aligned_cols=453 Identities=11% Similarity=-0.057 Sum_probs=276.9
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHh
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAF 90 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 90 (544)
.++...+..+.+.|++++|+..|+++++..|+.. ++..++.++...|++++|+..|+++. |.+..+|..++.++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHH-HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666644555 66666666666666666666666544 4444556666666666
Q ss_pred cCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRV 170 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 170 (544)
.|++++|+..|+++...+. ++......++..+........+...+..+...+..|+................
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------- 157 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C-------
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC-------
Confidence 6666666666666655431 22222222322222222222222222222111111111100000000000000
Q ss_pred HhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHhhh-----
Q 044352 171 FHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYAR---RGDSNAAFAFFSRMTA----- 242 (544)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----- 242 (544)
.++.......+..+...... . ....+.+...+......+.. .|++++|..+|+++.+
T Consensus 158 -----~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 158 -----LPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp -----CCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 01111110000000000000 0 00001123333334444443 6777777777777665
Q ss_pred CCC--------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC
Q 044352 243 EGF--------VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG 314 (544)
Q Consensus 243 ~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (544)
..- +.+...+..+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 210 1234566667777778888888888888877654 336667777777778888888888888777664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC---CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 315 LHIDVFTGSALIDMYSKCGSLKDARTLFEITR---IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISV 391 (544)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 391 (544)
+.+..++..+..++...|++++|...++.+. ..+...+..+...+...|++++|...++++.+. .+.+..++..+
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 378 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFF 378 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHH
Confidence 3356677788888888888888888887654 345678888888999999999999999999886 24467788889
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHh---cCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCR---SGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
...+...|++++|...++++.+.....++ ...+..++.++.. .|++++|...++++. .+.+..++..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999998775222222 3388889999999 999999999998874 45567788999999
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLS 494 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 494 (544)
+...|++++|...++++++++|.++..+..+.
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999888877663
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.1e-27 Score=229.98 Aligned_cols=188 Identities=13% Similarity=0.166 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCC---------hHHHHHHHHHHHHcCCCCChh
Q 044352 79 FMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLD---------IKKGKQVHAVATQMGFENDVS 149 (544)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 149 (544)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987664 567788888888877777776
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 044352 150 VGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD 229 (544)
Q Consensus 150 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 229 (544)
+|+.+|.+|++ .|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 107 tyn~lI~~~~~-------------------------------~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 107 TFTNGARLAVA-------------------------------KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHH-------------------------------HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh-------------------------------cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 66665555555 45555555666666666666677777777777777777
Q ss_pred hHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 044352 230 SNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLT 297 (544)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (544)
+++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..||..++..++..
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777666666777777777777777777777777777776666667766666666665543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.1e-25 Score=222.78 Aligned_cols=433 Identities=11% Similarity=0.000 Sum_probs=272.5
Q ss_pred chhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHH
Q 044352 45 NIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLK 121 (544)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 121 (544)
... .+..++..+.+.|++++|+..|+++. |.++.+|..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAV-QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHH-HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345 77888888888888888888888876 5677788888888888888888888888888753 235667777888
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCC------hhhHHHHHHHHhccCCh
Q 044352 122 ACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERD------VVSWTSMISGYCNVSKV 195 (544)
Q Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 195 (544)
.+...|++++|...++ .... .|+. ....+..+...+....|...++.+...+ .......+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8888888888888885 3322 2221 1222334445555677777777775421 11223344445555555
Q ss_pred hHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhc--------CChHHHHHHHHHhhhCCCCCC-------HhHHHHHHHHH
Q 044352 196 DEAVVLFERMKLEGLEPNQF-TYNAIIASYARR--------GDSNAAFAFFSRMTAEGFVPD-------LVTWNAMISGF 259 (544)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 259 (544)
+.+...+...... .+... ....+...+... +++++|..+|+++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 5555444332211 22222 222233332222 36778888888877653 222 22456666777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 260 AQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
...|++++|...++++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 7888888888888888765 3556677777778888888888888888877765 335667777777777777777777
Q ss_pred HHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC
Q 044352 340 TLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 340 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 416 (544)
..++.+.. .+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+...
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 77776542 345567777777777777777777777777652 44556677777777777777777777777665421
Q ss_pred CCCc----hhHHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044352 417 VKIS----KEHYACVVDMLCRS----------GRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 417 ~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (544)
..++ ...+...+.++... |++++|...|+++. .+.+..++..++.++...|++++|...|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 11233444555555 77777777776653 33445566666667777777777777777777
Q ss_pred HcCCCCchhHH
Q 044352 481 EMGLRKPDGFV 491 (544)
Q Consensus 481 ~~~p~~~~~~~ 491 (544)
+++|.++....
T Consensus 490 ~~~~~~~~~~~ 500 (537)
T 3fp2_A 490 ILARTMDEKLQ 500 (537)
T ss_dssp HHC--CHHHHH
T ss_pred HhCCCcHHHHH
Confidence 77766555433
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.9e-25 Score=220.79 Aligned_cols=423 Identities=11% Similarity=0.022 Sum_probs=329.3
Q ss_pred CcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHH
Q 044352 12 SVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMA 87 (544)
Q Consensus 12 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 87 (544)
....+..++..+.+.|++++|+..|+++++. |.+.. ++..++.+|...|++++|+..|+++. |.++.++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV-FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3567899999999999999999999999999 77777 99999999999999999999999876 6778899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhCCCHH
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGF--ENDVSVGNALIDMYSKCGLLC 165 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 165 (544)
+...|++++|+..|+ .... .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 4332 23322 1123333444556778888888765410 111111233445566778888
Q ss_pred HHHHHHhhccCCChh---hHHHHHHHHhcc--------CChhHHHHHHHHHHHcCCCCC--------HhhHHHHHHHHHh
Q 044352 166 SARRVFHGMFERDVV---SWTSMISGYCNV--------SKVDEAVVLFERMKLEGLEPN--------QFTYNAIIASYAR 226 (544)
Q Consensus 166 ~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~ 226 (544)
.+...+......+.. ....+...+... |++++|..+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 888877777664433 334444333332 47899999999998653 33 2346677788889
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 044352 227 RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREI 306 (544)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (544)
.|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999887 5668889999999999999999999999999765 45677899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---
Q 044352 307 HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEG--- 380 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 380 (544)
++.+.+.. +.+..++..+..++...|++++|..+++.+.. .+...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999876 33567888999999999999999999987763 456789999999999999999999999988742
Q ss_pred --CCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 381 --MRANEVTLISVLSACSHG----------GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 381 --~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
.......+.....++... |++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|+++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111223345556677777 9999999999999884 45567889999999999999999999999874
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.3e-24 Score=208.22 Aligned_cols=342 Identities=11% Similarity=0.020 Sum_probs=224.9
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 044352 146 NDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIA 222 (544)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 222 (544)
.+...+..+...+.+.|++++|...|+.+.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3444555555555555555555555555432 234455555555555555555555555555443 223444455555
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCH---hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 044352 223 SYARRGDSNAAFAFFSRMTAEGFVPDL---VTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGS 299 (544)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (544)
.|...|++++|...|+++.+.+ +.+. ..+..++..+... .+......+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 5555555555555555554432 1122 3333332221000 01122334566677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 300 IQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERM 376 (544)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 376 (544)
+++|...++.+.+.. +.+..++..++.+|.+.|++++|..+|+.+.. .+..+|..++.+|...|++++|+..++++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776654 34666777777888888888888888876653 45677888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHH------------HHHHhcCCchHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHH
Q 044352 377 LEEGMRANEVTLISV------------LSACSHGGLVEKGLEIFRSMKERYGVKIS-----KEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 377 ~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 439 (544)
.... +.+...+..+ ...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 8752 3344444443 77888899999999999999875 233 3477888899999999999
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH------------HHhcC----
Q 044352 440 AYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI------------CAADG---- 501 (544)
Q Consensus 440 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 501 (544)
|...++++. .+.+..++..++.+|...|++++|+..++++++++|+++.++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998874 455678899999999999999999999999999999999999999844 54555
Q ss_pred -ChHHHHHHHHH-HHhcC
Q 044352 502 -EWHEAENLRKI-MKEKN 517 (544)
Q Consensus 502 -~~~~A~~~~~~-~~~~~ 517 (544)
+.+++.+.|++ .++..
T Consensus 394 ~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp CCTTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 66777888876 44443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.4e-24 Score=205.81 Aligned_cols=385 Identities=9% Similarity=-0.038 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhh
Q 044352 94 FQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHG 173 (544)
Q Consensus 94 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 173 (544)
...+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555666665532 3466788999999999999999999999999875 66788999999999999999999999999
Q ss_pred ccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCH---hhHHHHHHH------------HHhcCChHHHHH
Q 044352 174 MFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQ---FTYNAIIAS------------YARRGDSNAAFA 235 (544)
Q Consensus 174 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~ 235 (544)
+.+ .+...+..+..++...|++++|...|+++.... +.+. ..+..++.. +...|++++|..
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 865 457789999999999999999999999998763 2233 566666443 667777777777
Q ss_pred HHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 044352 236 FFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGL 315 (544)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (544)
.|+++.+.. +.+...+..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+...
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777776653 4466677777777777777777777777776543 34556666677777777777777777777665532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHH
Q 044352 316 HIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN-----EVTLIS 390 (544)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 390 (544)
.+...+..+... .....+..++..+...|++++|...|+++... .|+ ...+..
T Consensus 243 -~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 243 -DHKRCFAHYKQV-------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp -TCHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred -ChHHHHHHHHHH-------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 223222222100 00011223366667777777777777777764 333 235666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHH-------
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV-TNSMAGAFRN------- 461 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~------- 461 (544)
+..++.+.|++++|...++++.+. .+.+...+..++.+|...|++++|...++++. ..| +...+..+..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 677777777777777777777653 24456677777777777777777777777653 223 3445555542
Q ss_pred -----HHhhcC-----ChHHHHHHHHH-HHHcCCCCch----------hHHHHHHHHHhcCChHHHH
Q 044352 462 -----GCNIHG-----RRDLAVTMGEE-FFEMGLRKPD----------GFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 462 -----~~~~~g-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~ 507 (544)
.|...| +.+++.+.|++ +++..|++.. .+..++.+|...|+.+++.
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 233334 67788999987 7777776432 4555666666666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.4e-21 Score=184.12 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=165.7
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHH
Q 044352 179 VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISG 258 (544)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (544)
+..+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445556666666666666666666665543 3345566666666666666666666666666542 3345566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHhhccCchHHHHHHHHHHHHcCCCCCHHHH
Q 044352 259 FAQSKRENEALKLFKGMLVSGIKP----NNVTVTGV------------LQAGGLTGSIQIGREIHALVCRMGLHIDVFTG 322 (544)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (544)
+...|++++|...|+++.+. .| +...+..+ ...+...|++++|...++.+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 66667777777777666643 23 22222222 344455555555555555555543 2344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----------
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLI---------- 389 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------- 389 (544)
..+..++...|++++|...++.+.. .+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 5555555556666666555554432 244455555555666666666666666655531 22222221
Q ss_pred --HHHHHHhcCCchHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 044352 390 --SVLSACSHGGLVEKGLEIFRSMKERYGVKISK----EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRN 461 (544)
Q Consensus 390 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 461 (544)
.+...+...|++++|...++++.+. . +.+. ..+..++.++...|++++|.+.++++. .+.+..++..++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 1233455555555555555555543 1 1111 123334455555555555555555442 2234445555555
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
++...|++++|...|+++++++|+++.++..+..+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=5.3e-21 Score=180.24 Aligned_cols=300 Identities=12% Similarity=0.024 Sum_probs=253.9
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 213 NQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQ 292 (544)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (544)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567778889999999999999999998764 5568899999999999999999999999999764 446778899999
Q ss_pred HhhccCchHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---ccHHHHHH
Q 044352 293 AGGLTGSIQIGREIHALVCRMGLH--IDVFTGSAL------------IDMYSKCGSLKDARTLFEITRI---KNVASWNA 355 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 355 (544)
++...|++++|...++.+.+.... .+...+..+ ...+...|++++|..+++.+.. .+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999987531 244455444 5788899999999999997663 46778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHH----------
Q 044352 356 MIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYA---------- 425 (544)
Q Consensus 356 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 425 (544)
+...+...|++++|...++++... .+.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 999999999999999999999986 3557889999999999999999999999999875 233333332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhCC--CCCCh----hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 426 --CVVDMLCRSGRMVEAYDLLRQVP--MYVTN----SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 426 --~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
.++..+.+.|++++|...++++. .+.+. ..+..++.++...|++++|+..++++++.+|+++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33677899999999999999874 22233 23556778899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|++++|...++++++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=2.1e-19 Score=176.51 Aligned_cols=379 Identities=12% Similarity=0.040 Sum_probs=269.3
Q ss_pred CHHHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHhhccC-CChhhH
Q 044352 112 NKFTFSIVLKACVG----LLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK----CGLLCSARRVFHGMFE-RDVVSW 182 (544)
Q Consensus 112 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~ 182 (544)
+...+..+...+.. .+++++|...++...+.| +...+..|...|.. .++.++|...|++..+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44444445544444 566666666666666543 34455556666666 6666666666666544 345555
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHhHHHH
Q 044352 183 TSMISGYCN----VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYAR----RGDSNAAFAFFSRMTAEGFVPDLVTWNA 254 (544)
Q Consensus 183 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (544)
..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 566666665 667777777777776654 34556666666665 667788888887777653 5666777
Q ss_pred HHHHHHc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 255 MISGFAQ----SKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL----TGSIQIGREIHALVCRMGLHIDVFTGSALI 326 (544)
Q Consensus 255 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 326 (544)
+...|.. .+++++|..+|++..+.| +......+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 7777776 778888888888777654 34455555555554 677888888888877664 455666777
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-ccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044352 327 DMYSK----CGSLKDARTLFEITRI-KNVASWNAMIGCYGKH-----GMVDSSIELFERMLEEGMRANEVTLISVLSACS 396 (544)
Q Consensus 327 ~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (544)
.+|.. .++.++|..+|+...+ .++..+..+...|... +++++|+..|++..+.+ +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 77777 7889999998887664 4566777888888877 89999999999998864 4566777777777
Q ss_pred cCC---chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHhh----
Q 044352 397 HGG---LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR----SGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNI---- 465 (544)
Q Consensus 397 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 465 (544)
..| ++++|.++|++..+. .+...+..+...|.. .+++++|.+.|++.....++..+..++..|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 656 789999999999874 467788889999988 89999999999987655578888889988887
Q ss_pred cCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 466 HGRRDLAVTMGEEFFEMGLR---KPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
.+++++|..+|+++.+.+|+ ++.+...++.++... .+.|.+..++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~~ 465 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQYI 465 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHHH
Confidence 89999999999999999954 777777777766543 344443333333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.5e-21 Score=176.28 Aligned_cols=287 Identities=12% Similarity=-0.011 Sum_probs=173.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQA 293 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (544)
...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3334444444444555555555555544332 2233334444444455555555555555554432 2233444444444
Q ss_pred hhccC-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHH
Q 044352 294 GGLTG-SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 294 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 369 (544)
+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++++.. .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 44444 4555555555544433 22344555666666666666666666655442 2344556667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhcCCHHHHHH
Q 044352 370 IELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG-------VKISKEHYACVVDMLCRSGRMVEAYD 442 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 442 (544)
...++++... .+.+..++..+...+...|++++|...++++.+... .+.....+..++.+|...|++++|..
T Consensus 179 ~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777765 244566777777777777778777777777766421 13335677777778888888888888
Q ss_pred HHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH-HhcCChH
Q 044352 443 LLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC-AADGEWH 504 (544)
Q Consensus 443 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 504 (544)
.++++. .+.+...+..++.++...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 877763 3445667777888888888888888888888888888888888888877 3445543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.3e-18 Score=170.81 Aligned_cols=363 Identities=14% Similarity=0.092 Sum_probs=305.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHhhccC-CChhhHHHHHHHHhc----cCChhHHHHHH
Q 044352 132 GKQVHAVATQMGFENDVSVGNALIDMYSK----CGLLCSARRVFHGMFE-RDVVSWTSMISGYCN----VSKVDEAVVLF 202 (544)
Q Consensus 132 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 202 (544)
+...+....+. .+......+...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 34445554443 467777888888888 8999999999998865 567788888899988 89999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHH
Q 044352 203 ERMKLEGLEPNQFTYNAIIASYAR----RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQ----SKRENEALKLFKG 274 (544)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 274 (544)
++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..|...|.. .+++++|+++|++
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998765 55667778888888 789999999999998765 56778888888887 8899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcC
Q 044352 275 MLVSGIKPNNVTVTGVLQAGGL----TGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSK----CGSLKDARTLFEITR 346 (544)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 346 (544)
..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|++..
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 98865 56677777777776 899999999999999876 56677888888886 789999999999876
Q ss_pred C-ccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHhC
Q 044352 347 I-KNVASWNAMIGCYGK----HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHG-----GLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 347 ~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 416 (544)
. .++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... +++++|...+++..+. +
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~ 326 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G 326 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C
Confidence 5 466778888888887 899999999999998764 556777777777776 8999999999999874 3
Q ss_pred CCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCchh
Q 044352 417 VKISKEHYACVVDMLCRSG---RMVEAYDLLRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
+...+..+...|...| ++++|.+.|++.....++..+..++..|.. .+++++|+.+|+++.+.+ ++.+
T Consensus 327 ---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 327 ---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp ---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred ---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 5567888888888866 789999999988655678899999999988 899999999999999875 5889
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 044352 490 FVMLSNICAA----DGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 490 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 518 (544)
+..|+.+|.. .+++++|...|++..+.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999 8999999999999998763
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.6e-20 Score=172.39 Aligned_cols=287 Identities=8% Similarity=-0.030 Sum_probs=242.0
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044352 246 VPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSAL 325 (544)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (544)
+.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 5566778888999999999999999999999764 4455667778888899999999999999999876 4467888899
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 044352 326 IDMYSKCG-SLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLV 401 (544)
Q Consensus 326 ~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (544)
...+...| ++++|...|++... .+...|..+...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 456789999999999999999999999999863 44567788899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCChhHHHHHHHHHhhcCChH
Q 044352 402 EKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-----------MYVTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~ 470 (544)
++|...++++.+ ..+.+...+..++..+...|++++|...++++. .+....++..++.++...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999986 345667889999999999999999999998763 1344678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCceEEEecC-e-eeccccc
Q 044352 471 LAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFSRVEKRN-E-FVEKEVQ 539 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 539 (544)
+|+..++++++.+|+++.++..++.++.+.|++++|...++++++.. |+....|..++. + -..|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999999987643 444455555544 2 3444443
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.6e-18 Score=170.59 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---c-cHHHHHHHHHHHHh
Q 044352 301 QIGREIHALVCRMGLHIDVFTGSALIDMYSK-------CGSLK-------DARTLFEITRI---K-NVASWNAMIGCYGK 362 (544)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 362 (544)
..+..+|+++.... +.++.+|..++..+.+ .|+++ +|..++++... | +...|..++..+..
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36677888887764 4468888888888775 68887 89999998764 3 57789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCHHH
Q 044352 363 HGMVDSSIELFERMLEEGMRAN-E-VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM-LCRSGRMVE 439 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 439 (544)
.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+. .+.+...+...+.. +...|++++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999999999984 554 3 47888888888999999999999999863 23334444433333 346899999
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 440 AYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD----GFVMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 440 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
|..+|+++. .+.++..|..++..+...|+.++|+.+|+++++..|.+|. .|..++......|+.+.+..+++++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999864 3446788999999999999999999999999999877665 7888888888999999999999999
Q ss_pred HhcC
Q 044352 514 KEKN 517 (544)
Q Consensus 514 ~~~~ 517 (544)
.+.-
T Consensus 490 ~~~~ 493 (530)
T 2ooe_A 490 FTAF 493 (530)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 8754
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=7.7e-17 Score=165.69 Aligned_cols=419 Identities=11% Similarity=0.054 Sum_probs=293.3
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHhhccc----chhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHH
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTNDL----NIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWM 84 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 84 (544)
...+|+---..+.++...|.+.+|++++++++-.+. +.. ..+.++..-.+. +.....+...+....+ ...+
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~-LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eI 1055 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRN-LQNLLILTAIKA-DRTRVMEYINRLDNYD---APDI 1055 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH-HHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHH
Confidence 345666667778888899999999999999885522 333 445555554444 3333333333333222 3447
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 044352 85 VMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLL 164 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (544)
...+...|.+++|..+|++... .......++. ..+++++|.++.++. .++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 7778889999999999998632 1222233322 667888888888754 4577888999999999999
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044352 165 CSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG 244 (544)
Q Consensus 165 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (544)
++|...|.+. .|...|..++.++.+.|++++|.+.|...++.. +++...+.++.+|++.+++++...+. .
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--- 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--- 1191 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h---
Confidence 9999999764 777888889999999999999999998877653 34333445888888888887544332 1
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 245 FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSA 324 (544)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (544)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 456677777888999999999999999874 37888888899999999999888876 35678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CCchH
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH--GGLVE 402 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 402 (544)
+..+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+... +-....|.-+...+++ .++..
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888888888888887765 44456667788888999999999999998877643 2334455555555544 44555
Q ss_pred HHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhC--------------CCCCChhHHHHHHHH
Q 044352 403 KGLEIFRSMKERYGVKI------SKEHYACVVDMLCRSGRMVEAYDLLRQV--------------PMYVTNSMAGAFRNG 462 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~ 462 (544)
++.+.|..-. ++++ +...|..++..|.+.|+++.|....-+- ....++..+...+..
T Consensus 1334 Ehlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1334 EHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 5555554322 4443 4567888888899999999887332211 134456666666666
Q ss_pred HhhcC---------------ChHHHHHHHH
Q 044352 463 CNIHG---------------RRDLAVTMGE 477 (544)
Q Consensus 463 ~~~~g---------------~~~~A~~~~~ 477 (544)
|.... |+++++.+++
T Consensus 1411 yl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1411 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 65555 6667766666
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=4.4e-20 Score=174.67 Aligned_cols=305 Identities=11% Similarity=-0.027 Sum_probs=207.0
Q ss_pred HHhccCChhHHHH-HHHHHHHcCC-CC--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCC
Q 044352 188 GYCNVSKVDEAVV-LFERMKLEGL-EP--NQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSK 263 (544)
Q Consensus 188 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (544)
++...|++++|.+ .|++...... .| +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4445566777766 6665432211 11 23445666677777777777777777776654 445666677777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 264 RENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFE 343 (544)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 343 (544)
++++|...|+++++.. +.+..++..+..++...|++++|...+..+.+.... +...+..+... ...
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~----- 178 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG----- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----
Confidence 7777777777776653 335556666666666667777777666666665422 11111111000 000
Q ss_pred hcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch
Q 044352 344 ITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA--NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK 421 (544)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 421 (544)
.. ....+..+... ...|++++|...++++.... +. +..++..+...+...|++++|...++++.+. .+.+.
T Consensus 179 --~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~ 251 (368)
T 1fch_A 179 --AG-LGPSKRILGSL-LSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDY 251 (368)
T ss_dssp ----------CTTHHH-HHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred --hc-ccHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCH
Confidence 00 00111122333 37889999999999998863 22 4788899999999999999999999999874 35567
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-----------ch
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK-----------PD 488 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~ 488 (544)
..+..++.++...|++++|...++++. .+.+..++..++.++...|++++|...+++++++.|++ +.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 889999999999999999999999874 45567889999999999999999999999999999887 78
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
++..++.+|...|++++|..++++.+
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999999999999887544
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-18 Score=171.04 Aligned_cols=390 Identities=8% Similarity=-0.031 Sum_probs=188.8
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----c--ccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----
Q 044352 77 NVFMLNWMVMASAFTGNFQEAIGYFSLMREF-----I--YRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMG----- 143 (544)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 143 (544)
....||.+...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556788888888888888888888876542 0 112 23456666667777777777777766665431
Q ss_pred -C-CCChhHHHHHHHHHHh--CCCHHHHHHHHhhccC--C-ChhhHHHHHHH---HhccCChhHHHHHHHHHHHcCCCCC
Q 044352 144 -F-ENDVSVGNALIDMYSK--CGLLCSARRVFHGMFE--R-DVVSWTSMISG---YCNVSKVDEAVVLFERMKLEGLEPN 213 (544)
Q Consensus 144 -~-~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 213 (544)
. .....++..+..++.. .+++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 1112333333333332 2345555555555432 1 22233322222 223344455555555544432 222
Q ss_pred HhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044352 214 QFTYNAIIASYAR----RGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTG 289 (544)
Q Consensus 214 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (544)
...+..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|...+++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------ 275 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE------------ 275 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH------------
Confidence 3333333333222 233444555555444332 33344444455555555555555555555443
Q ss_pred HHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHH
Q 044352 290 VLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 369 (544)
.. +.+..++..+..+|...+....+.. . ..........+.++.|
T Consensus 276 -----------------------~~-p~~~~~~~~lg~~y~~~~~~~~~~~------~------~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 276 -----------------------YI-PNNAYLHCQIGCCYRAKVFQVMNLR------E------NGMYGKRKLLELIGHA 319 (472)
T ss_dssp -----------------------HS-TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHH
T ss_pred -----------------------hC-CChHHHHHHHHHHHHHHHHHhhhHH------H------HHHHHHHHHHhhHHHH
Confidence 32 1133333333333322111000000 0 0000001112235567
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch--hHHHHHHHH-HHhcCCHHHHHHHHHh
Q 044352 370 IELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK--EHYACVVDM-LCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~ 446 (544)
...+++..... +.+..++..+...+...|++++|...|+++.+. ...+.. ..+..++.. +...|++++|+..|++
T Consensus 320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776652 334556677777778888888888888877663 222211 122333322 3467788888888877
Q ss_pred CC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCce
Q 044352 447 VP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQPGFS 525 (544)
Q Consensus 447 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (544)
+. ..|+..... +....+..++++.++.+|+++.++..+|.+|...|++++|++.|+++++.+...+...+
T Consensus 398 al~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 398 GVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 53 344432221 22345667788899999999999999999999999999999999999998877666777
Q ss_pred EE
Q 044352 526 RV 527 (544)
Q Consensus 526 ~~ 527 (544)
|+
T Consensus 469 ~~ 470 (472)
T 4g1t_A 469 WN 470 (472)
T ss_dssp --
T ss_pred cC
Confidence 74
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.2e-17 Score=165.86 Aligned_cols=215 Identities=10% Similarity=0.006 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-------cCchH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044352 267 EALKLFKGMLVSGIKPNNVTVTGVLQAGGL-------TGSIQ-------IGREIHALVCRMGLHIDVFTGSALIDMYSKC 332 (544)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (544)
++..+|++.+... +.+...|......+.. .|+++ +|..++++..+.-.+.+...+..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566666666542 3345555555555543 46655 6777777776522244567777777777788
Q ss_pred CCHHHHHHHHHhcCC--c-cH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCchHHHHHH
Q 044352 333 GSLKDARTLFEITRI--K-NV-ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA-CSHGGLVEKGLEI 407 (544)
Q Consensus 333 ~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~ 407 (544)
|++++|..+|+++.. | +. ..|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|++++|..+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 888888888876553 2 33 478888888888888899999999888752 2233444333322 3358899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 408 FRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT--NSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
|++..+. .+.+...|..++..+.+.|+.++|..+|+++. ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 414 ~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988875 24467888888998999999999999998864 1222 33777778888889999999999999999
Q ss_pred cCCC
Q 044352 482 MGLR 485 (544)
Q Consensus 482 ~~p~ 485 (544)
..|+
T Consensus 492 ~~p~ 495 (530)
T 2ooe_A 492 AFRE 495 (530)
T ss_dssp HTHH
T ss_pred HCch
Confidence 8884
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2e-16 Score=162.73 Aligned_cols=372 Identities=10% Similarity=0.088 Sum_probs=175.4
Q ss_pred HHHHHHhhcCCChHHHHHHhccCC-C-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhh
Q 044352 51 SKLVGVYAGCGDVNSARLVFDKIP-N-----PNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACV 124 (544)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 124 (544)
...+++|+..|.+.+|+++++++. . .+....+.++....+. +..+..++.++.... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 334445555555555555555544 1 1223333344433333 333333333333211 0 112344445
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 125 GLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
..|.+++|..+|++.. ......+.+ +...+++++|.++.+++ .+..+|..+..++...|++++|.+.|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5555555555555531 111111111 11445555555555544 2344555555555555666665555543
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 044352 205 MKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNN 284 (544)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (544)
.-|...|..++..+.+.|++++|.++|....+.. +++...+.++.+|++.++++....+. . .++.
T Consensus 1131 ------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 ------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred ------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 2344455555555555566666655555544432 22222223555555555555322221 1 2334
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcC
Q 044352 285 VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHG 364 (544)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 364 (544)
..+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|.+.+++. .+..+|..+..+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhh
Confidence 44445555555555666665555542 24555555555556666665555554 33455555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHH
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR--SGRMVEAYD 442 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~ 442 (544)
++..|...... +..++..+..++..|.+.|.+++|+.+++..... -+-....|..+..+|.+ -++..++.+
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55555554432 1223344445555566666666666666554421 12223344444444443 234444444
Q ss_pred HHHhCC-CC------CChhHHHHHHHHHhhcCChHHHH
Q 044352 443 LLRQVP-MY------VTNSMAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 443 ~~~~~~-~~------~~~~~~~~l~~~~~~~g~~~~A~ 473 (544)
+|..-. .+ .+...|..+...|.+.|+++.|.
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 443321 11 12344555555566666666655
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=7e-19 Score=162.22 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=126.0
Q ss_pred cCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHH
Q 044352 59 GCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAV 138 (544)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 138 (544)
+.|++++|.+.++++..| .+|..++.++...|++++|++.|.+. +|..+|..++..+...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567888888888888554 48888888888888888888888653 4667888888888888888888887777
Q ss_pred HHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHH
Q 044352 139 ATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYN 218 (544)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (544)
..+. .+++.+...++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 45567778888888888888888877753 66678888888888899999999888866 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 044352 219 AIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTG 298 (544)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (544)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCC
Confidence 8888888999999998888887 26788888888999999998885554432 223333456778888888
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHhcCC-c-------cHHHHHHHHHHHHhcCChHH
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKC--GSLKDARTLFEITRI-K-------NVASWNAMIGCYGKHGMVDS 368 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~g~~~~ 368 (544)
.++++..+++...... +-...+|..+..+|++- +++.+.++.|..-.. | +...|..+.-.|...++++.
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999988888887665 44567777777777663 455555555543332 2 34578899999999999998
Q ss_pred HHHH
Q 044352 369 SIEL 372 (544)
Q Consensus 369 A~~~ 372 (544)
|...
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.1e-18 Score=156.19 Aligned_cols=272 Identities=9% Similarity=-0.036 Sum_probs=201.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCH--hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 044352 223 SYARRGDSNAAFAFFSRMTAEGFVPDL--VTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSI 300 (544)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (544)
-....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567777777776665433 2332 2444456677777777777765543 1245555666666667777777
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044352 301 QIGREIHALVCRMGL-HIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEE 379 (544)
Q Consensus 301 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 379 (544)
+.|...++.+...+. +.+...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 777777777766553 33566777788899999999999999998 567788999999999999999999999999986
Q ss_pred CCCCCHHHH---HHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChh
Q 044352 380 GMRANEVTL---ISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNS 454 (544)
Q Consensus 380 ~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 454 (544)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...++++. .+.++.
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3553311 22334445679999999999999885 56788899999999999999999999999874 455778
Q ss_pred HHHHHHHHHhhcCChHH-HHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044352 455 MAGAFRNGCNIHGRRDL-AVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLR 510 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 510 (544)
++..++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 89999999999999876 57899999999999887765 455555666655443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.3e-19 Score=171.24 Aligned_cols=256 Identities=8% Similarity=-0.079 Sum_probs=179.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044352 252 WNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSK 331 (544)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (544)
+..+...+.+.|++++|...|+++++.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444555555555555555555555432 2334445555555555555555555555555443 2245555566666666
Q ss_pred cCCHHHHHHHHHhcCCcc-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHh
Q 044352 332 CGSLKDARTLFEITRIKN-------------VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA--NEVTLISVLSACS 396 (544)
Q Consensus 332 ~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 396 (544)
.|++++|...++++...+ ...+..+...+...|++++|...++++.... +. +..++..+...+.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHH
Confidence 666666666665554311 1234455778889999999999999999863 33 6788999999999
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHH
Q 044352 397 HGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVT 474 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (544)
..|++++|...++++.+. .+.+..++..++.+|...|++++|...|+++. .+.+..++..++.+|...|++++|+.
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999874 45568899999999999999999999999874 44567889999999999999999999
Q ss_pred HHHHHHHcCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 475 MGEEFFEMGLR------------KPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 475 ~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
.|++++++.|+ +..++..++.++...|+.+.|..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998876 367899999999999999999887765
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.3e-18 Score=157.74 Aligned_cols=376 Identities=11% Similarity=0.042 Sum_probs=171.3
Q ss_pred ccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044352 25 KSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLM 104 (544)
Q Consensus 25 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 104 (544)
+.|++++|.+.++++ +++. +|..++.++.+.|++++|++.|.+. +|+..|..++..+...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~----~~~~-vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----NEPA-VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----CChH-HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 678899999999988 3446 9999999999999999999999764 57779999999999999999999988877
Q ss_pred HhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHH
Q 044352 105 REFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTS 184 (544)
Q Consensus 105 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 184 (544)
.+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 763 4567788999999999999999998874 467789999999999999999999999987 58999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCC
Q 044352 185 MISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKR 264 (544)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (544)
++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.|+
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCC
Confidence 999999999999999999988 37899999999999999999996655442 3344445578899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--cCchHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHH
Q 044352 265 ENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL--TGSIQIGREIHALVCRMGLHI------DVFTGSALIDMYSKCGSLK 336 (544)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 336 (544)
+++|..+++..+... +.....|+.+..++++ .++..+..+.|... .++++ +...|..++..|...++++
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 999999999988543 3445556665555544 33444444444421 22222 4567888999999999999
Q ss_pred HHHHHHHhcCC---------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 044352 337 DARTLFEITRI---------------KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLV 401 (544)
Q Consensus 337 ~A~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (544)
.|....-.-+. .+...|...+..|.. ....++.-+...+...+.+ ...+..+.+.|.+
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~~l 372 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTTCT
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----HHHHHHHHHcCCc
Confidence 98876654432 234455555555541 1222222222222211111 2233344455555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 402 EKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
.-...++..+... .+..+=.++-..|....+++.-..-.+.
T Consensus 373 ~l~~~yl~~v~~~----n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 373 PLVKPYLRSVQNH----NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TTTHHHHHHHHTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555444321 2233333444555566655554444443
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=5e-18 Score=160.46 Aligned_cols=298 Identities=11% Similarity=0.013 Sum_probs=181.9
Q ss_pred HHhCCCHHHHHH-HHhhccC---C----ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 044352 158 YSKCGLLCSARR-VFHGMFE---R----DVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD 229 (544)
Q Consensus 158 ~~~~~~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 229 (544)
+...|++++|.. .+++... . +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 7776643 1 34568888899999999999999999998774 5567788889999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 044352 230 SNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHAL 309 (544)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 309 (544)
+++|...|+++.+.. +.+..++..+..++...|++++|...++++..... .+...+.... .....
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~------ 178 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAE-------EGAGG------ 178 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH-------HHhhh------
Confidence 999999999988775 55788899999999999999999999999987542 2222211110 00000
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044352 310 VCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI--K---NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN 384 (544)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 384 (544)
.. ....+..+...+ ..|++++|...++.+.. | +..++..+...+...|++++|...++++.... +.+
T Consensus 179 -----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 -----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 000111111122 44555555555554432 1 34555666666666666666666666666541 334
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-----------
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYV----------- 451 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----------- 451 (544)
..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...|+++. .+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 556666666666666666666666666553 23445566666666666666666666666542 111
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
...+|..++.++...|++++|..++++.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 145666777777777777777776665544
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.2e-18 Score=164.65 Aligned_cols=257 Identities=13% Similarity=-0.044 Sum_probs=173.1
Q ss_pred CcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHH
Q 044352 12 SVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMA 87 (544)
Q Consensus 12 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 87 (544)
+...+..++..+.+.|++++|...++++++. |.+.. ++..++.++...|++++|+..|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE-AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556888888899999999999999999988 66677 88999999999999999999998876 5667788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCH-----------HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCC--ChhHHHHH
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNK-----------FTFSIVLKACVGLLDIKKGKQVHAVATQMGFEN--DVSVGNAL 154 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 154 (544)
+...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++++.+.. +. +..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 999999999999999888742 321 122234566677777777777777777764 33 46666677
Q ss_pred HHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 044352 155 IDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSN 231 (544)
Q Consensus 155 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (544)
..+|...|++++|...|+++.+ .+..+|..+..++...|++++|...|++..+.. +.+..++..+...|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777766643 345566666666666777777777776666542 333556666666666666666
Q ss_pred HHHHHHHHhhhCCC---C--------CCHhHHHHHHHHHHcCCCHHHHHHHHH
Q 044352 232 AAFAFFSRMTAEGF---V--------PDLVTWNAMISGFAQSKRENEALKLFK 273 (544)
Q Consensus 232 ~a~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (544)
+|...|+++.+... . .+...|..+..++...|+.+.+..+..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666554310 0 023455666666666666665555443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=7.3e-19 Score=163.23 Aligned_cols=278 Identities=9% Similarity=-0.053 Sum_probs=206.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQA 293 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (544)
...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666777778888888888888877653 4466777777788888888888888888877653 3455666667777
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHH-HH-HHHhcCChHHHHH
Q 044352 294 GGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAM-IG-CYGKHGMVDSSIE 371 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~ 371 (544)
+...|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++++|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 77777777777777777665422 222222211100 000111122 22 3667788999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 044352 372 LFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--M 449 (544)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 449 (544)
.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++. .
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999998863 457788899999999999999999999999874 35567888999999999999999999998864 4
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC------------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR------------KPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+.+..++..++.++...|++++|...++++++..|. ++.++..++.++.+.|++++|..++++.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999998 788999999999999999999999876543
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=4e-17 Score=159.86 Aligned_cols=385 Identities=7% Similarity=-0.074 Sum_probs=219.5
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHhccCC------------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhccc----
Q 044352 46 IFSLKSKLVGVYAGCGDVNSARLVFDKIP------------NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIY---- 109 (544)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 109 (544)
.. +++.++.++...|++++|++.|++.. +....+|+.+..+|...|++++|+..+++..+...
T Consensus 51 a~-~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 AT-MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 44 88999999999999999999998753 23456799999999999999999999999875311
Q ss_pred --cc-CHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHH---HHhCCCHHHHHHHHhhccC---CC
Q 044352 110 --RC-NKFTFSIVLKAC--VGLLDIKKGKQVHAVATQMGFENDVSVGNALIDM---YSKCGLLCSARRVFHGMFE---RD 178 (544)
Q Consensus 110 --~p-~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~---~~ 178 (544)
.+ ...++.....++ ...+++++|...|++..+.. |.++..+..+..+ +...++.++|+..+++..+ .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 11 234555554444 34568999999999999885 5556666655555 4456788888888887644 34
Q ss_pred hhhHHHHHHHHh----ccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHH
Q 044352 179 VVSWTSMISGYC----NVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNA 254 (544)
Q Consensus 179 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (544)
...+..+...+. ..+++++|...+++..... +.+...+..+...|...|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 555655554443 3577899999999988764 5567788889999999999999999999988763 445666776
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGS 334 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (544)
+..+|...+... .... .... .......+..+.|...+....+.. +
T Consensus 287 lg~~y~~~~~~~---------~~~~-~~~~------~~~~~~~~~~~~A~~~~~~a~~~~-~------------------ 331 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-ENGM------YGKRKLLELIGHAVAHLKKADEAN-D------------------ 331 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-T------------------
T ss_pred HHHHHHHHHHHh---------hhHH-HHHH------HHHHHHHhhHHHHHHHHHHHhhcC-C------------------
Confidence 666653211110 0000 0000 000001112334444444444332 1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhcCCchHHHHHHHHHH
Q 044352 335 LKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEV--TLISVLS-ACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 335 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~ 411 (544)
.+...+..+...+...|++++|+..|++.+.....+... .+..+.. .....|++++|+..|.+.
T Consensus 332 -------------~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 332 -------------NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp -------------TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred -------------chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122344455555556666666666666665532221111 1122221 233566677777777666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 412 KERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
.+. .|+....... ...+.+++++.. .+.+..++..++.+|...|++++|++.|+++++++|.+|.+
T Consensus 399 l~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 399 VKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred Hhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 542 3332221111 122233333321 35567789999999999999999999999999999999988
Q ss_pred HHHHH
Q 044352 490 FVMLS 494 (544)
Q Consensus 490 ~~~l~ 494 (544)
...+|
T Consensus 467 ~~~~G 471 (472)
T 4g1t_A 467 SSWNG 471 (472)
T ss_dssp -----
T ss_pred hhcCC
Confidence 87765
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.9e-18 Score=153.70 Aligned_cols=247 Identities=8% Similarity=0.022 Sum_probs=203.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044352 256 ISGFAQSKRENEALKLFKGMLVSGIKPNN--VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCG 333 (544)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 333 (544)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887653 24443 3556678899999999999986654 23557778888999999999
Q ss_pred CHHHHHHHHHhcC-----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 044352 334 SLKDARTLFEITR-----IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIF 408 (544)
Q Consensus 334 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (544)
+.++|.+.++.+. ..+...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998763 23567788888999999999999999987 567889999999999999999999999
Q ss_pred HHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 409 RSMKERYGVKISKEH---YACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 409 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
+++.+. .|+... ...++..+...|++++|..+|+++. .+.++..++.++.++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 344321 1223344455699999999999884 56678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhcC
Q 044352 484 LRKPDGFVMLSNICAADGEWHE-AENLRKIMKEKN 517 (544)
Q Consensus 484 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 517 (544)
|+++.++..++.++...|+.++ +.++++++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 578999988765
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=6.2e-18 Score=156.96 Aligned_cols=259 Identities=12% Similarity=-0.004 Sum_probs=190.8
Q ss_pred CcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHH
Q 044352 12 SVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMA 87 (544)
Q Consensus 12 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 87 (544)
+...+...+..+...|++++|...++++++. |.+.. ++..++.++...|++++|...|+++. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE-AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 5567889999999999999999999999999 66777 99999999999999999999999876 5677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCHH-HHHHH--------------HH-HhhCCCChHHHHHHHHHHHHcCCCCChhHH
Q 044352 88 SAFTGNFQEAIGYFSLMREFIYRCNKF-TFSIV--------------LK-ACVGLLDIKKGKQVHAVATQMGFENDVSVG 151 (544)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 151 (544)
+...|++++|+..++++.+.. |+.. .+..+ .. .+...|++++|...++.+.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999998753 3322 22222 22 2667778888888888887764 4566777
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 044352 152 NALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRG 228 (544)
Q Consensus 152 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (544)
..+..++...|++++|...++++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 7777777788888888777777643 345566777777777777777777777766553 334556666777777777
Q ss_pred ChHHHHHHHHHhhhCCCCC-----------CHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044352 229 DSNAAFAFFSRMTAEGFVP-----------DLVTWNAMISGFAQSKRENEALKLFKGM 275 (544)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (544)
++++|.+.|+++.+..... +...|..+..++...|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777777765542110 3556666677777777777777666543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=3.9e-17 Score=141.26 Aligned_cols=195 Identities=16% Similarity=0.037 Sum_probs=157.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 316 HIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVL 392 (544)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 392 (544)
+++...+..+...+.+.|++++|...|++... .++..+..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667788888888999999999999987654 466788889999999999999999999998863 44677888888
Q ss_pred HHHhcC-----------CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHH
Q 044352 393 SACSHG-----------GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAF 459 (544)
Q Consensus 393 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 459 (544)
.++... |++++|+..+++..+. .|.+...+..++.+|...|++++|+..|+++. . .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 888888 9999999999999874 34567889999999999999999999999874 4 778899999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 460 RNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
+.++...|++++|+..|+++++++|+++.++..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998753
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-16 Score=141.82 Aligned_cols=230 Identities=12% Similarity=-0.006 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 250 VTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMY 329 (544)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (544)
..|..+...+...|++++|+..|+++++.. .+...+..+..++...|++++|...+..+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 445555566666666666666666665544 4444444444444444444444444444333210000
Q ss_pred HhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 044352 330 SKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFR 409 (544)
Q Consensus 330 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 409 (544)
.+.. .....|..+...+...|++++|...++++... .|+.. .+...|++++|...++
T Consensus 73 ---~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 73 ---ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHH
T ss_pred ---cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHH
Confidence 0000 00356777777888888888888888888774 45532 3555677888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc
Q 044352 410 SMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 487 (544)
++.. ..+.+...+..++..+...|++++|...++++. .+.+...+..++.++...|++++|+..++++++.+|+++
T Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 130 AEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp HHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH
Confidence 8876 344456778888888888999999998888864 455677888888899999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++..++.++.+.|++++|...++++++..
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887654
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=1.2e-15 Score=147.44 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=131.9
Q ss_pred HHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCCh---HHHHHHhccCCCCCchhHHHHHHHHHhcC-
Q 044352 17 DCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDV---NSARLVFDKIPNPNVFMLNWMVMASAFTG- 92 (544)
Q Consensus 17 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 92 (544)
..+...+.+.|++++|.+.|+++.+. .+.. ++..++.+|...|+. ++|+..|++....++.++..+...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g~~~-A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-GYSE-AQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCT-GGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-CCHH-HHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 44677788999999999999999776 3444 667788888888888 89999999988668888888888665555
Q ss_pred ----CHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC--
Q 044352 93 ----NFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDI---KKGKQVHAVATQMGFENDVSVGNALIDMYSKCGL-- 163 (544)
Q Consensus 93 ----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 163 (544)
++++|+..|++..+.|.. ..+..+...|...+.. .++...+......| ++.....+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 788999999998886532 2555555555544432 33444454444443 34455556666666553
Q ss_pred --HHHHHHHHhhccCCChhhHHHHHHHHhccC---ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChHHHH
Q 044352 164 --LCSARRVFHGMFERDVVSWTSMISGYCNVS---KVDEAVVLFERMKLEGLEPNQFTYNAIIASYARR----GDSNAAF 234 (544)
Q Consensus 164 --~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~ 234 (544)
.+.+..++......++..+..+...|...| ++++|+..|++..+.| +++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 333444444444455556666666666666 6666666666665555 34444434444444433 4566666
Q ss_pred HHHHHhhhCCCCCCHhHHHHHHHH-H--HcCCCHHHHHHHHHHHHHcC
Q 044352 235 AFFSRMTAEGFVPDLVTWNAMISG-F--AQSKRENEALKLFKGMLVSG 279 (544)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~ 279 (544)
.+|++.. +-++..+..|... + ...+++++|+.+|++..+.|
T Consensus 238 ~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 238 ALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 6666554 2233444444444 2 33555555555555555443
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=1.4e-16 Score=153.81 Aligned_cols=334 Identities=11% Similarity=0.004 Sum_probs=187.5
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHhccC-----ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH---HHHHH
Q 044352 165 CSARRVFHGMFERDVVSWTSMISGYCNVS-----KVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSN---AAFAF 236 (544)
Q Consensus 165 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~ 236 (544)
++|...|++..+.++..+..+...+...+ ++++|...|++..+.|. ++ .+..+...|...+..+ ++.+.
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 45555554444334444444444333332 44555555555555431 11 3344444444433222 23333
Q ss_pred HHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC---chHHHHHHHHHHHHc
Q 044352 237 FSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTG---SIQIGREIHALVCRM 313 (544)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 313 (544)
+......| ++..+..|...|...+.++++......+.+.-...++..+..+...+...| +.++|...|+...+.
T Consensus 132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 33333322 233444455555555533333333222221111222225555555555555 666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhcCCccHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHH
Q 044352 314 GLHIDVFTGSALIDMYSKC----GSLKDARTLFEITRIKNVASWNAMIGC-Y--GKHGMVDSSIELFERMLEEGMRANEV 386 (544)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~ 386 (544)
| +++...+..+..+|... +++++|..+|+.....++..+..+... + ...+++++|+..|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5 23444444555555443 577788887776663355666666666 3 45788888999998888765 566
Q ss_pred HHHHHHHHHhcCC-----chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHH
Q 044352 387 TLISVLSACSHGG-----LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR----SGRMVEAYDLLRQVPMYVTNSMAG 457 (544)
Q Consensus 387 ~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 457 (544)
.+..+...|. .| ++++|..+|++.. +.+...+..++..|.. ..++++|...|++.....++.+..
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 6666776666 44 8899999888775 3466777788877776 348899999998876556677777
Q ss_pred HHHHHHhh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHH--HhcCChHHHHHHHHHHHhc
Q 044352 458 AFRNGCNI----HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC--AADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 458 ~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 516 (544)
.++..|.. ..+.++|..+|+.+.+.+++ .+...+..+. ...++..+|..+.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 88777764 46899999999999988764 4444444443 3345777888887776653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-16 Score=141.75 Aligned_cols=238 Identities=8% Similarity=-0.089 Sum_probs=171.9
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGI--KPN----NVTV 287 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 287 (544)
...+..+...+...|++++|...|++..+.. .+...|..+..++...|++++|+..+.++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4677888999999999999999999998886 7888999999999999999999999999886431 112 3455
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChH
Q 044352 288 TGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 367 (544)
..+..++...|++++|...++.+.+.. |+. ..+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~ 122 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHH
Confidence 555556666666666666666655543 111 2234445566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 368 SSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
+|...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..++.+|...|++++|...++++
T Consensus 123 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666666631 224456666666777777777777777777663 3445667777777777777777777777765
Q ss_pred C--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC------CCCchhHHHHHHH
Q 044352 448 P--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG------LRKPDGFVMLSNI 496 (544)
Q Consensus 448 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 496 (544)
. .+.+...+..++.++...|++++|...++++++++ |.+..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3 34457778888888999999999999999999988 8777777766543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=1.5e-15 Score=136.70 Aligned_cols=257 Identities=8% Similarity=-0.070 Sum_probs=143.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 044352 216 TYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPN--NVTVTGVLQA 293 (544)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 293 (544)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+....++ ...+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44456667777778888888887777653 33455677777777777888888877777776321111 1225555566
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHH
Q 044352 294 GGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSI 370 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 370 (544)
+...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++... .+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665553 22344555555555555555555555555443 23334444442222233555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 371 ELFERMLEEGMRANEVTLISVLSACSHGGL---VEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
..++++.+.. +.+...+..+..++...|+ +++|...++++.+.....|+.. -.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~---------------------- 218 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD---------------------- 218 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH----------------------
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH----------------------
Confidence 5555544431 2223333334444433333 4444444444433211111110 00
Q ss_pred CCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 448 PMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
....++..++..|...|++++|+..++++++++|+++.++..+..+....+
T Consensus 219 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 219 ---ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 012456678888899999999999999999999999999988877765544
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.9e-14 Score=129.53 Aligned_cols=224 Identities=9% Similarity=-0.041 Sum_probs=139.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHcCCCCCHHHHH
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGL----TGSIQIGREIHALVCRMGLHIDVFTGS 323 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (544)
+...+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4455566666666666666666666666652 122334444444444 444444444444444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 044352 324 ALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGK----HGMVDSSIELFERMLEEGMRANEVTLISVLSACSH-- 397 (544)
Q Consensus 324 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 397 (544)
++..+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34445555555555 666666666666666543 45556666666666
Q ss_pred --CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHhh----cC
Q 044352 398 --GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR----SGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNI----HG 467 (544)
Q Consensus 398 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 467 (544)
.+++++|...+++..+. + +...+..+...|.. .+++++|...|++.....++.++..++..|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66777777777666653 2 44556666666666 67777777777665433455666677777777 77
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 044352 468 RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA----DGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (544)
++++|+.+++++++.+| +.++..++.+|.. .+++++|++.|++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888888888777765 6677777777777 778888888887777665
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2.6e-15 Score=135.41 Aligned_cols=239 Identities=8% Similarity=-0.105 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 263 KRENEALKLFKGMLVSGI---KPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
|++++|+..|+++++... +.+..++..+..++...|++++|...++.+.+.. +.+..++..++.++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 444444444444443211 0122334444444444555555555555544443 224556666666777777777777
Q ss_pred HHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC
Q 044352 340 TLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 340 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 416 (544)
..|+++.. .+...+..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+.+....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 77765553 35667788888888888888888888888875 444444444445556678999999999887764
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 417 VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV-----TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
.+++...+ .++..+...++.++|.+.++++. ..| +...+..++..+...|++++|...++++++.+|++...+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 23343333 46677778888889999888764 222 146788899999999999999999999999999775544
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 044352 491 VMLSNICAADGEWHEAENLR 510 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~ 510 (544)
+.++...|++++|++.+
T Consensus 253 ---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 ---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHhhHHHH
Confidence 67888999999998876
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=7.3e-16 Score=133.21 Aligned_cols=192 Identities=13% Similarity=-0.058 Sum_probs=142.6
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHH
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMV 85 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 85 (544)
|+++.++..+...+.+.|++++|+..++++++. |.+.. ++..++.++.+.|++++|+..|++.. |.++..+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE-ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 557778999999999999999999999999999 77777 99999999999999999999999876 66777888888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 044352 86 MASAFT-----------GNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNA 153 (544)
Q Consensus 86 ~~~~~~-----------~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 153 (544)
.++... |++++|+..|++..+. .| +...+..+...+...|++++|...+++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 888888 8888888888888874 34 45667777778888888888888888888776 66777777
Q ss_pred HHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 044352 154 LIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 154 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
+..+|...|++++|...|++..+ .+...+..+...+...|++++|...|++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77778788888888777777643 345566677777777777777777776543
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=160.76 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHH---HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHH
Q 044352 179 VVSWTSMISGYCNVSKVDEAVVLFERMK---LEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAM 255 (544)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 255 (544)
..+|+++|++|++.|+.++|.++|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3578899999999999999999987775 3478899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 044352 256 ISGFAQSKRE-NEALKLFKGMLVSGIKPNNVTVTGVLQAG 294 (544)
Q Consensus 256 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (544)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 9999888874 67888999999999999988888776543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=3.3e-15 Score=139.64 Aligned_cols=246 Identities=8% Similarity=-0.039 Sum_probs=177.0
Q ss_pred cCCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCC-hHHHHHHhccCC---CCCchh
Q 044352 6 FPINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGD-VNSARLVFDKIP---NPNVFM 80 (544)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~ 80 (544)
+..+|....+|..+..++...|++++|+..++++++. |.+.. ++..++.++...|+ +++|+..|+++. +.+..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~-a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT-VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH-HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3345556678888888888889999999999999888 66666 88888888888886 999998888876 667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
|+.+..++...|++++|+..|+++++.+. -+...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 88888888888899999999988887532 256678888888888888888888888888876 5677788888888888
Q ss_pred -CCCHHHH-----HHHHhhccC---CChhhHHHHHHHHhccC--ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-
Q 044352 161 -CGLLCSA-----RRVFHGMFE---RDVVSWTSMISGYCNVS--KVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRG- 228 (544)
Q Consensus 161 -~~~~~~A-----~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 228 (544)
.|..++| +..|++... .+...|+.+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhc
Confidence 5554666 355665543 34556777777777766 567777777666 22 2344556666666666653
Q ss_pred --------ChHHHHHHHHHh-hhCCCCCCHhHHHHHHH
Q 044352 229 --------DSNAAFAFFSRM-TAEGFVPDLVTWNAMIS 257 (544)
Q Consensus 229 --------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 257 (544)
.+++|+++|+++ .+.+ +.....|..+..
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 246777777776 4442 223334444443
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=9.2e-15 Score=122.95 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=144.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 349 NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
+..+|..+...|...|++++|++.|++.++.. +-+..++..+..++...|++++|...+..+... .+.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888899999999999999999988863 446778888899999999999999999998774 455667788888
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH
Q 044352 429 DMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
..+...++++.|.+.+.++. .+.+...+..++.++...|++++|+..|+++++++|.++.++..+|.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999988864 4556778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 044352 507 ENLRKIMKEKN 517 (544)
Q Consensus 507 ~~~~~~~~~~~ 517 (544)
++.|+++++.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998754
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=4.8e-14 Score=126.87 Aligned_cols=228 Identities=9% Similarity=-0.027 Sum_probs=167.0
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044352 212 PNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQ----SKRENEALKLFKGMLVSGIKPNNVTV 287 (544)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (544)
-+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35677888899999999999999999999873 456788889999999 999999999999999875 56677
Q ss_pred HHHHHHhhc----cCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHh-
Q 044352 288 TGVLQAGGL----TGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGK- 362 (544)
Q Consensus 288 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~- 362 (544)
..+...+.. .+++++|...++...+.+ +...+..+. ..|..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg-------------------------------~~~~~~ 123 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLG-------------------------------GIYHDG 123 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH-------------------------------HHHHHC
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHH-------------------------------HHHHcC
Confidence 777777776 777777777777766553 344444444 44444
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 044352 363 ---HGMVDSSIELFERMLEEGMRANEVTLISVLSACSH----GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR-- 433 (544)
Q Consensus 363 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 433 (544)
.+++++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+. .+...+..+..+|..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence 556666666666666543 34455555666655 67777777777777653 245566677777777
Q ss_pred --cCCHHHHHHHHHhCCCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCC
Q 044352 434 --SGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 434 --~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 486 (544)
.+++++|.+.|++.....+...+..++..|.. .+++++|+.+|+++++++|++
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77888888877776433346677778888887 889999999999999998853
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=3.1e-15 Score=132.11 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
....+..+...+...|++++|..+|+++.. .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556666667777777777777766543 345677777777778888888888888877752 4466677777777
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887764 34456677777888888888888888887763 344566777778888888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+..++++++.+|.++.++..++.++...|++++|...++++++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888888888888887654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.2e-14 Score=135.80 Aligned_cols=244 Identities=9% Similarity=0.024 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044352 252 WNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGS-IQIGREIHALVCRMGLHIDVFTGSALIDMYS 330 (544)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (544)
|..+...+...|++++|+..+++++... +-+...+..+..++...|+ +++|...++++.+.. +.+..+|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1223333333334444442 444444444444433 224555555555666
Q ss_pred hcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCchHHH--
Q 044352 331 KCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH-GGLVEKG-- 404 (544)
Q Consensus 331 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-- 404 (544)
..|++++|+..|+++.. .+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 66666666666655542 345566666677777777777777777777752 3356667777777666 4444555
Q ss_pred ---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcC--------C-h
Q 044352 405 ---LEIFRSMKERYGVKISKEHYACVVDMLCRSG--RMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHG--------R-R 469 (544)
Q Consensus 405 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g--------~-~ 469 (544)
+..+++..+. .+.+...|..+..++...| ++++|.+.+.++. .+.+...+..++.+|...| + +
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4666666653 2344566777777777766 5677777776653 2334556667777776653 2 5
Q ss_pred HHHHHHHHHH-HHcCCCCchhHHHHHHHHHhc
Q 044352 470 DLAVTMGEEF-FEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 470 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 500 (544)
++|+.+|+++ ++++|.....|..++..+...
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8888888888 888888888888887766543
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=2e-12 Score=129.01 Aligned_cols=433 Identities=10% Similarity=-0.033 Sum_probs=283.5
Q ss_pred hhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCC---HHHHHHHH
Q 044352 29 LRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGN---FQEAIGYF 101 (544)
Q Consensus 29 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~ 101 (544)
..+-+..++..+.. |.+.. .|..++..+.+.+.++.++.+|+++. |.....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np~d~~-~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIF-LYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 44455567777777 77777 99999999888899999999999876 6777788888888888888 99999999
Q ss_pred HHHHhcc-cccCHHHHHHHHHHhhCCCCh--------HHHHHHHHHHHH-cCC-CC-ChhHHHHHHHHHHh---------
Q 044352 102 SLMREFI-YRCNKFTFSIVLKACVGLLDI--------KKGKQVHAVATQ-MGF-EN-DVSVGNALIDMYSK--------- 160 (544)
Q Consensus 102 ~~~~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 160 (544)
++.+... ..|+...|..-+....+.++. +.+.++|+..+. .|. .+ +..+|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 137777777666554444332 334567776654 354 34 34677777765442
Q ss_pred CCCHHHHHHHHhhccCCC----hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 044352 161 CGLLCSARRVFHGMFERD----VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAF 236 (544)
Q Consensus 161 ~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 236 (544)
+++++.+..+|+++.... ...|...... .+.-+...+..++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~f-e~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQW-EQDVNQLTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHH-HHHHCTTTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HHhcCcchHHHHHHHh---------------------hHHHHHHHHH
Confidence 335677788888776421 1222222111 1100111122221111 0122223333
Q ss_pred HHHhhhC--CC----C-----------C-----C---HhHHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCCCCCH
Q 044352 237 FSRMTAE--GF----V-----------P-----D---LVTWNAMISGFAQSK-------RENEALKLFKGMLVSGIKPNN 284 (544)
Q Consensus 237 ~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~ 284 (544)
+.++... ++ + | + ...|...+..--..+ ..+.+..+|++.+... +.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCH
Confidence 3221100 00 0 1 0 123444443322222 1344567788877652 4467
Q ss_pred HHHHHHHHHhhccCchHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------c--
Q 044352 285 VTVTGVLQAGGLTGSIQIGR-EIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-------------K-- 348 (544)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~-- 348 (544)
..|...+.-+...|+.+.|. .++++....- +.+...+...+....+.|+++.|..+|+.+.. |
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 77777777777888888886 8998888753 45677777788888889999999998887653 2
Q ss_pred ----------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHhCC
Q 044352 349 ----------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHG-GLVEKGLEIFRSMKERYGV 417 (544)
Q Consensus 349 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 417 (544)
...+|...+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++.+.|..+|+...+. +
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--C
Confidence 12368888888888899999999999998851122344555444433344 4599999999999986 3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV----TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
+.+...+...+......|+.+.|..+|+++. ..| ....|..++..-...|+.+.+..+.+++.+..|+++.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 4556677788888889999999999999875 223 2457888888888999999999999999999998654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=2.4e-14 Score=124.68 Aligned_cols=198 Identities=12% Similarity=-0.031 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
+..++..++..+...|++++|...++.+.. .+...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666677777777777777777775542 345677777888888888888888888887752 4466777788888
Q ss_pred HhcC-CchHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChH
Q 044352 395 CSHG-GLVEKGLEIFRSMKERYGVKI-SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 395 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 470 (544)
+... |++++|...++++.+. +..| +...+..++.++...|++++|...++++. .+.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8888888888888762 2223 35677778888888888888888887763 3445677888888888889999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 471 LAVTMGEEFFEMGL-RKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 471 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+|...++++++..| .++..+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999888888 888888888888888899998888888887654
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.6e-14 Score=128.33 Aligned_cols=197 Identities=9% Similarity=-0.042 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSAC 395 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (544)
...+..+...+...|++++|...|+.+.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44556666666777777777777765542 345667777777777778888888777777652 34566777777777
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKI-SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
...|++++|..+++++.+. +..| +...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7788888888888777651 2233 45667777777888888888888877753 334566777777888888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
...++++++..|.++..+..++.++.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888887654
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=5.7e-15 Score=130.44 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
+...+..+...+...|++++|...++.+.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555566666666666666655442 345667777778888888888888888888763 4567778888888
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+..++..++.++...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 88899999999999888774 34567788888889999999999999998764 445677888999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 473 VTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
...++++++++|+++.++..++.+....|
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999888776654433
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=8.2e-14 Score=125.32 Aligned_cols=245 Identities=8% Similarity=-0.049 Sum_probs=192.6
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--HhHHHHHH
Q 044352 179 VVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD--LVTWNAMI 256 (544)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 256 (544)
...+......+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456677888999999999999999998774 34555888899999999999999999999987431222 23488899
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044352 257 SGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLK 336 (544)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (544)
.++...|++++|+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+..++..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 4466789999999999999999999999988874 446777777773444456999
Q ss_pred HHHHHHHhcCC---ccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhcCCchHH
Q 044352 337 DARTLFEITRI---KNVASWNAMIGCYGKHGM---VDSSIELFERMLEEG-MRANE------VTLISVLSACSHGGLVEK 403 (544)
Q Consensus 337 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~------~~~~~l~~~~~~~~~~~~ 403 (544)
+|...|+.+.+ .+...+..+..++...|+ +++|...++++.+.. -.|+. .++..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987764 356788888888888888 888999999988742 12332 467778888888999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 404 GLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
|.+.++++.+. .|.+......+.
T Consensus 240 A~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 240 ADAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHHHhc--CccHHHHHHHhh
Confidence 99999998874 233444444443
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.7e-15 Score=140.13 Aligned_cols=300 Identities=13% Similarity=0.049 Sum_probs=194.2
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC
Q 044352 211 EPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD----LVTWNAMISGFAQSKRENEALKLFKGMLVS----GIKP 282 (544)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 282 (544)
.+....+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455566777888889999999999999988763 223 356778888999999999999999887643 1112
Q ss_pred -CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCC--------------------HH
Q 044352 283 -NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH-I----DVFTGSALIDMYSKCGS--------------------LK 336 (544)
Q Consensus 283 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 336 (544)
...++..+...+...|++++|...+....+.... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345666777788888888888888877654211 1 13366667777777777 77
Q ss_pred HHHHHHHhcCC-----c----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchH
Q 044352 337 DARTLFEITRI-----K----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RAN----EVTLISVLSACSHGGLVE 402 (544)
Q Consensus 337 ~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 402 (544)
+|...++.... . ...++..+...+...|++++|...+++...... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 77777665432 1 123566777777777788888777777765310 111 125666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHhhcCChH
Q 044352 403 KGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~ 470 (544)
+|...+++..+.....++ ..++..++..|...|++++|...++++. ...+ ..++..++..+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777777776543111111 3456667777777777777777776652 1111 335566666777777777
Q ss_pred HHHHHHHHHHHcCCCCc------hhHHHHHHHHHhcCChHHHHHHHH
Q 044352 471 LAVTMGEEFFEMGLRKP------DGFVMLSNICAADGEWHEAENLRK 511 (544)
Q Consensus 471 ~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 511 (544)
+|...+++++++.+... .++..++.++...|+...+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 77777777777777663 345566666666666665544443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=5.5e-15 Score=141.50 Aligned_cols=292 Identities=11% Similarity=0.009 Sum_probs=210.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC-C
Q 044352 178 DVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPN----QFTYNAIIASYARRGDSNAAFAFFSRMTAE----GFVP-D 248 (544)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 248 (544)
....+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34456677788889999999999999988764 223 356778888999999999999999886533 2111 2
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCc--------------------hHHH
Q 044352 249 LVTWNAMISGFAQSKRENEALKLFKGMLVSGI-KPN----NVTVTGVLQAGGLTGS--------------------IQIG 303 (544)
Q Consensus 249 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 303 (544)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999998875311 111 3467777888888999 8999
Q ss_pred HHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----cc----HHHHHHHHHHHHhcCChHHH
Q 044352 304 REIHALVCRM----GL-HIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----KN----VASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 304 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A 369 (544)
...+....+. +. +....++..+...+...|++++|...+++... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9888876553 11 11244677888889999999999998887653 11 23788888899999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHH
Q 044352 370 IELFERMLEEGM-RAN----EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEA 440 (544)
Q Consensus 370 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 440 (544)
...+++...... .++ ..++..+...+...|++++|...+++..+......+ ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998876310 111 457778888899999999999999988764221222 45777888899999999999
Q ss_pred HHHHHhCC-----C--C-CChhHHHHHHHHHhhcCChH
Q 044352 441 YDLLRQVP-----M--Y-VTNSMAGAFRNGCNIHGRRD 470 (544)
Q Consensus 441 ~~~~~~~~-----~--~-~~~~~~~~l~~~~~~~g~~~ 470 (544)
.+.+++.. . . ....++..++..+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988753 1 1 11234455555555555544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=8.9e-15 Score=140.36 Aligned_cols=269 Identities=13% Similarity=0.074 Sum_probs=162.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHH
Q 044352 216 TYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDL----VTWNAMISGFAQSKRENEALKLFKGMLVSGI-KPNNVTVTGV 290 (544)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 290 (544)
.+..+...+...|++++|...|+++.+.+ +.+. ..|..+..+|...|++++|...+++.++... ..+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-------
Confidence 34445556666777777777777766552 2222 3556666666677777777777666653200 000
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc---------cHHHHHHHHHHHH
Q 044352 291 LQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK---------NVASWNAMIGCYG 361 (544)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~ 361 (544)
.+....++..+...|...|++++|...+++.... ...++..+...|.
T Consensus 122 ------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 122 ------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0112233444444555555555555554433311 1234555666666
Q ss_pred hcCC-----------------hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC
Q 044352 362 KHGM-----------------VDSSIELFERMLEE----GMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKI 419 (544)
Q Consensus 362 ~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 419 (544)
..|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+.....+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 66666666665432 1111 223566667777777888888777777665311111
Q ss_pred c----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC----ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-
Q 044352 420 S----KEHYACVVDMLCRSGRMVEAYDLLRQVP----MYV----TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK- 486 (544)
Q Consensus 420 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~- 486 (544)
+ ...+..++.+|...|++++|.+.++++. ... ...++..++..+...|++++|...+++++++.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2266677777888888888888777653 111 13466777778888888888888888888865432
Q ss_pred -----chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 487 -----PDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 487 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
..++..++.+|.+.|++++|..+++++++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347888888899999999999888888653
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=9.2e-14 Score=123.42 Aligned_cols=172 Identities=10% Similarity=-0.035 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSA 394 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 394 (544)
..++..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++...+..| +...+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 44455555555555566666555554432 344566666777777777777777777776632233 45667777778
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888764 24456778888888888888888888888763 344566778888889999999999
Q ss_pred HHHHHHHHHcCCCCchhHHH
Q 044352 473 VTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~ 492 (544)
...++++++..|+++.....
T Consensus 229 ~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHH
Confidence 99999999999988776554
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=7.9e-12 Score=124.70 Aligned_cols=217 Identities=6% Similarity=-0.079 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044352 301 QIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR-TLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERM 376 (544)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 376 (544)
+.+..+|+++...- +....+|...+..+...|+.++|. .++++... .+...|..++......|++++|.++|+++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556788777763 457888888888888899998996 99987764 35567888888888999999999999999
Q ss_pred HHcC---------CCCC------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 377 LEEG---------MRAN------------EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 377 ~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
+... -.|+ ..+|...+....+.|+.+.|..+|.++.+. ........|...+..-.+.|
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhC
Confidence 8741 0132 236777777777889999999999999873 12223445555544444554
Q ss_pred -CHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCChHHHHHH
Q 044352 436 -RMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR---KPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 436 -~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
+.+.|..+|+... .+.++..|..++......|+.+.|+.+|+++++..|+ ....|..++..-.+.|+.+.+..+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999999874 3445667778888888899999999999999998873 456788888888899999999999
Q ss_pred HHHHHhcCCC
Q 044352 510 RKIMKEKNVQ 519 (544)
Q Consensus 510 ~~~~~~~~~~ 519 (544)
.+++.+....
T Consensus 564 ~~R~~~~~P~ 573 (679)
T 4e6h_A 564 EKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHhCCC
Confidence 9999987543
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.3e-14 Score=134.87 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=172.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 044352 216 TYNAIIASYARRGDSNAAFAFFSRMTAEGFVPD----LVTWNAMISGFAQSKRENEALKLFKGMLVSGIK-PNNVTVTGV 290 (544)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 290 (544)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++....... ++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ------ 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc------
Confidence 34445566677777777777777776653 222 245666777777777777777777776532100 000
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----cc----HHHHHHHHHHHH
Q 044352 291 LQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----KN----VASWNAMIGCYG 361 (544)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~ 361 (544)
+....++..+...+...|++++|...+++... .+ ..++..+...+.
T Consensus 80 -------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 80 -------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00122334444445555555555555443321 11 224555666666
Q ss_pred hcCC--------------------hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhC
Q 044352 362 KHGM--------------------VDSSIELFERMLEE----GMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYG 416 (544)
Q Consensus 362 ~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 416 (544)
..|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 66666666665432 1111 233566677777788888888888887765311
Q ss_pred CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 417 VKIS----KEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 417 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
..++ ...+..++..+...|++++|...+++.. ...+ ..++..++..+...|++++|...++++++..|
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1111 2367778888888899999888887753 1112 44677788889999999999999999988764
Q ss_pred CC------chhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 485 RK------PDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 485 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.. ..++..++.++.+.|++++|..+++++.+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 33 3478889999999999999999999988753
No 61
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=154.11 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=114.1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhh---hCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044352 212 PNQFTYNAIIASYARRGDSNAAFAFFSRMT---AEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVT 288 (544)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (544)
.-..||+++|++|++.|++++|.++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999998876 45889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCch-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044352 289 GVLQAGGLTGSI-QIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDA 338 (544)
Q Consensus 289 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 338 (544)
.+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999888766654333333
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2.2e-13 Score=118.56 Aligned_cols=208 Identities=8% Similarity=-0.034 Sum_probs=145.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALID 327 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (544)
+...+..+...+...|++++|...++++.+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PK-----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-cc-----------------------------------chHHHHHHHH
Confidence 34555666666666666666666666665542 22 2334445555
Q ss_pred HHHhcCCHHHHHHHHHhcC---CccHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchH
Q 044352 328 MYSKCGSLKDARTLFEITR---IKNVASWNAMIGCYGKH-GMVDSSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVE 402 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 402 (544)
.+...|++++|...++.+. ..+...+..++..+... |++++|...++++.+.+..| +...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555443 23455666777777778 88888888888877732233 3567777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-CChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 044352 403 KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MY-VTNSMAGAFRNGCNIHGRRDLAVTMGEEF 479 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (544)
+|...++++.+. .+.+...+..++.++...|++++|.++++++. .+ .+...+..+...+...|+.++|..+++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888764 34457778888888888899999988888763 33 45667777777888999999999999999
Q ss_pred HHcCCCCchhHHHH
Q 044352 480 FEMGLRKPDGFVML 493 (544)
Q Consensus 480 ~~~~p~~~~~~~~l 493 (544)
.+.+|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999888776654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.3e-14 Score=141.12 Aligned_cols=208 Identities=10% Similarity=-0.028 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044352 300 IQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSL-KDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFER 375 (544)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 375 (544)
++.+...+....... +.+...+..+...+...|++ ++|...|++..+ .+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444555444332 34667777788888888888 888888876653 3567888899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC---------CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHH
Q 044352 376 MLEEGMRANEVTLISVLSACSHG---------GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRS--------GRMV 438 (544)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 438 (544)
.++. .|+...+..+..++... |++++|+..++++.+. .+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 57778888999999999 9999999999999874 355678899999999998 9999
Q ss_pred HHHHHHHhCC--CC---CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 439 EAYDLLRQVP--MY---VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 439 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
+|.+.|+++. .+ .+...+..++.+|...|++++|+..|+++++++|+++.++..++.++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999874 33 47889999999999999999999999999999999999999999999999999999976544
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=1.2e-13 Score=124.36 Aligned_cols=217 Identities=12% Similarity=-0.010 Sum_probs=119.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHH
Q 044352 181 SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFA 260 (544)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 260 (544)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 44455555555555666666665555443 3345556666666666666666666666665542 334556666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044352 261 QSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDART 340 (544)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 340 (544)
..|++++|...|+++.+. .|+.......+..+...|++++|...+........ ++...+ .++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHH
Confidence 666666666666666654 23333333333344555666666666665555432 222222 34555566666677777
Q ss_pred HHHhcCCcc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHH
Q 044352 341 LFEITRIKN-------VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIF 408 (544)
Q Consensus 341 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (544)
.++.....+ ...|..+...+...|++++|...++++... .| +...+ ..++...|++++|++.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 776665432 345666666677777777777777777664 33 22222 33444555666655544
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.9e-14 Score=134.59 Aligned_cols=276 Identities=11% Similarity=0.050 Sum_probs=186.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCCHh
Q 044352 180 VSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQ----FTYNAIIASYARRGDSNAAFAFFSRMTAE----GF-VPDLV 250 (544)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 250 (544)
..+..+...+...|++++|...|++..+.+ +.+. ..+..+...+...|++++|...+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345567788899999999999999998874 2232 46788889999999999999999987643 11 22346
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHhhccCc-----------------hHHHHHHHH
Q 044352 251 TWNAMISGFAQSKRENEALKLFKGMLVSG----I-KPNNVTVTGVLQAGGLTGS-----------------IQIGREIHA 308 (544)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 308 (544)
.+..+...|...|++++|...+.+..+.. . .....++..+...+...|+ ++.|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888899999999999999999887531 0 1112234444444555555 333333333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-
Q 044352 309 LVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK--NVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RAN- 384 (544)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 384 (544)
+..+ +......+ ....+..+...+...|++++|...+++..+... .++
T Consensus 208 ~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 208 ENLK----------------------------LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHH----------------------------HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 3221 11111111 123566677777778888888887777765310 011
Q ss_pred ---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--
Q 044352 385 ---EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVK----ISKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYV-- 451 (544)
Q Consensus 385 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-- 451 (544)
..++..+...+...|++++|...+++..+...-. .....+..++.+|...|++++|...++++. ...
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2266777778888888888888888776542111 114567778888888999999988888763 111
Q ss_pred --ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 452 --TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
...++..++..|...|++++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 134677788889999999999999999998876
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.8e-13 Score=114.95 Aligned_cols=167 Identities=13% Similarity=0.022 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
++.+|..+...|...|++++|+..|++..+ .++.+|..+..++...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567888889999999999999999987663 467788999999999999999999999998863 4467778888888
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 472 (544)
+...++++.+...+.+.... .+.+...+..++.+|.+.|++++|++.|+++. .+.+..++..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998874 45567888999999999999999999999874 456778899999999999999999
Q ss_pred HHHHHHHHHcCCCCc
Q 044352 473 VTMGEEFFEMGLRKP 487 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~ 487 (544)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999754
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.3e-13 Score=128.16 Aligned_cols=276 Identities=11% Similarity=0.023 Sum_probs=181.1
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CCHhH
Q 044352 181 SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPN----QFTYNAIIASYARRGDSNAAFAFFSRMTAE----GFV-PDLVT 251 (544)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 251 (544)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45566778889999999999999998774 223 356788889999999999999999987543 111 22557
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCc--------------------hHHHHHH
Q 044352 252 WNAMISGFAQSKRENEALKLFKGMLVSGI-KPN----NVTVTGVLQAGGLTGS--------------------IQIGREI 306 (544)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 306 (544)
+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ ++.|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999998875311 111 1244444455555555 4444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 044352 307 HALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK--NVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RA 383 (544)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 383 (544)
+....+. .+....+ ....+..+...+...|++++|...+++..+... .+
T Consensus 166 ~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 166 YEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 3332211 1111111 123566666677777777777777777654210 01
Q ss_pred ----CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC
Q 044352 384 ----NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEAYDLLRQVP----MYV 451 (544)
Q Consensus 384 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 451 (544)
...++..+...+...|++++|...+++..+......+ ...+..++..|...|++++|...++++. ...
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1225666777777888888888888777653111111 4566777788888888888888887653 111
Q ss_pred C----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 452 T----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 452 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
+ ..++..++..+...|++++|...+++++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1 346777888899999999999999999988764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=2e-13 Score=129.50 Aligned_cols=195 Identities=8% Similarity=-0.041 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----c-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 044352 320 FTGSALIDMYSKCGSLKDARTLFEITRI-----K-----NVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RAN---- 384 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---- 384 (544)
.++..+...|...|+++.|...+++... + ...+++.+...|...|++++|...+++..+... .++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4455556666666666666665554331 1 123567777777788888888888777765310 011
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHh---CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-h
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERY---GV-KISKEHYACVVDMLCRSGRMVEAYDLLRQVP------MYVT-N 453 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~ 453 (544)
..++..+..+|...|++++|...+++..+.. +. +....++..++.+|.+.|++++|...+++.. ..+. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2367777778888888888888888776521 22 3335667778888888888888888887753 1121 2
Q ss_pred hHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 454 SMAGAFRNGCNIHGR---RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..+..+...+...|+ +++|+.++++. ...|....++..++.+|...|++++|..+++++.+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234566777888888 77777777765 22344556788899999999999999999998875
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=2e-13 Score=137.85 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044352 349 NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVV 428 (544)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 428 (544)
+..+|+.+...+...|++++|++.|++.++.. +-+..++..+..++.+.|++++|+..|+++.+. .+.+...|..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45678889999999999999999999998862 346778899999999999999999999999874 345578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHH
Q 044352 429 DMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEA 506 (544)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 506 (544)
.+|...|++++|++.|+++. .+.+..++..++.+|...|++++|+..|+++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998874 4556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044352 507 ENLRKIMKE 515 (544)
Q Consensus 507 ~~~~~~~~~ 515 (544)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.2e-12 Score=124.02 Aligned_cols=164 Identities=12% Similarity=0.080 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----cc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCH
Q 044352 320 FTGSALIDMYSKCGSLKDARTLFEITRI-----KN----VASWNAMIGCYGKHGMVDSSIELFERMLEE----GM-RANE 385 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~ 385 (544)
.++..+..+|...|++++|...+++... .+ ..++..+..+|...|++++|+..+++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4566677777788888888777765542 11 236788888999999999999999998772 23 3345
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERY---GVKISKEHYACVVDMLCRSGR---MVEAYDLLRQVPMYVT-NSMAGA 458 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 458 (544)
.++..+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++....++ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 678888999999999999999999886642 122223335667888889998 8999999998864433 346778
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
++..|...|++++|...+++++++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999998865
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=4e-13 Score=112.85 Aligned_cols=163 Identities=13% Similarity=0.028 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDML 431 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (544)
.+..+...+...|++++|...++++... .+.+..++..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3444555555666666666666665543 1334555666666666666677777666666653 234556666667777
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 432 CRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 432 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776653 3445667778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 044352 510 RKIMKEKN 517 (544)
Q Consensus 510 ~~~~~~~~ 517 (544)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99988654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=4.3e-12 Score=116.15 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-------ccCch-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044352 266 NEALKLFKGMLVSGIKPNNVTVTGVLQAGG-------LTGSI-------QIGREIHALVCRMGLHIDVFTGSALIDMYSK 331 (544)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (544)
++|..+|++++... +.+...|..++..+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555432 233344444444332 23443 5666666666652113345566666777777
Q ss_pred cCCHHHHHHHHHhcCC--c-cHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCchHHHHH
Q 044352 332 CGSLKDARTLFEITRI--K-NVA-SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACS-HGGLVEKGLE 406 (544)
Q Consensus 332 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 406 (544)
.|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766553 2 233 67777777777777777777777777652 334444443333322 3577888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--ChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044352 407 IFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPM----YV--TNSMAGAFRNGCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (544)
+|++..+. .+.+...|..++..+.+.|++++|..+|+++.. +| ....|..++..+...|+.++|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88777764 234566777777777777788888777777631 33 24467777777777788888888888888
Q ss_pred HcCCCCch
Q 044352 481 EMGLRKPD 488 (544)
Q Consensus 481 ~~~p~~~~ 488 (544)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 87776553
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=8.6e-14 Score=127.84 Aligned_cols=238 Identities=13% Similarity=0.060 Sum_probs=130.0
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc------C
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVS-------GIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRM------G 314 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 314 (544)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566777888888888888888888888753 11222334555555555566666666655554432 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 044352 315 L-HIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEE------GMRA-NEV 386 (544)
Q Consensus 315 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~ 386 (544)
. +... .++..+...+...|++++|...++++.+. +..| ...
T Consensus 106 ~~~~~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVA-------------------------------ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHH-------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHH-------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 0 1112 24444555555555555555555555442 1112 233
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERY------GVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP----------MY 450 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 450 (544)
++..+...+...|++++|..+++++.+.. ..+.....+..++.+|...|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555556666666666666666654421 011223445556666666666666666665542 00
Q ss_pred C-Ch------hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 451 V-TN------SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 451 ~-~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+ .. ..+......+...+.+.+|...++++....|.++.++..++.+|.+.|++++|+++++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 11 112222233445667777888888888888888888999999999999999999999888753
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.7e-12 Score=118.77 Aligned_cols=214 Identities=12% Similarity=0.032 Sum_probs=115.4
Q ss_pred hhhhHHhHHHhhc-ccchhhHHHHHHHHhhc-------CCCh-------HHHHHHhccCC----CCCchhHHHHHHHHHh
Q 044352 30 RQGKQVHALLCTN-DLNIFSLKSKLVGVYAG-------CGDV-------NSARLVFDKIP----NPNVFMLNWMVMASAF 90 (544)
Q Consensus 30 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 90 (544)
++|...|+++++. |.++. +|..++..+.. .|++ ++|+..|++.. +.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~-~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD-IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778888777 66666 77777777653 3554 56666666543 2334456666666666
Q ss_pred cCCHHHHHHHHHHHHhcccccC-HH-HHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 044352 91 TGNFQEAIGYFSLMREFIYRCN-KF-TFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSAR 168 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 168 (544)
.|++++|..+|+++++ +.|+ .. .|..+...+.+.|++++|..+|++..+.+ +.+...|...+....
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~--------- 179 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY--------- 179 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH---------
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH---------
Confidence 6666666666666665 3333 22 45555555555566666666666555543 222333322221111
Q ss_pred HHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCC
Q 044352 169 RVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEG-FVP 247 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 247 (544)
...|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 180 ---------------------~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 180 ---------------------YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp ---------------------HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred ---------------------HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 11355555555555554432 2234455555555555566666666666555532 232
Q ss_pred --CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 044352 248 --DLVTWNAMISGFAQSKRENEALKLFKGMLVS 278 (544)
Q Consensus 248 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (544)
....|..++..+.+.|+.+.|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2345555555555566666666666665543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=1.1e-12 Score=114.35 Aligned_cols=190 Identities=7% Similarity=-0.054 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI----KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLS 393 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 393 (544)
++..+......+...|++++|...|+.... ++...+..+..++...|++++|+..+++..... +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 344455555555555555555555554331 334444445555555555555555555555431 223344555555
Q ss_pred HHhcCCchHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---hhHHHHHHHH
Q 044352 394 ACSHGGLVEKGLEIFRSMKERYGVKISK-------EHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT---NSMAGAFRNG 462 (544)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~ 462 (544)
++...|++++|...+++..+. .+.+. ..|..++..+...|++++|.+.|+++. ..|+ ...+..++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555543 12222 234444444445555555555554432 2222 2334444444
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+... +...++++..+.+.++..+.. ......+.+++|+.+++++++..
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 3322 223334444444333222222 12233344599999999998765
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=7.1e-13 Score=128.81 Aligned_cols=193 Identities=11% Similarity=-0.060 Sum_probs=97.6
Q ss_pred CchhHHHHHHHHHhcCCH-HHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 044352 77 NVFMLNWMVMASAFTGNF-QEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALI 155 (544)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 155 (544)
+...|..+...+...|++ ++|+..|++..+... .+...|..+...+...|++++|...++...+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 334444444444444444 444444444444211 123344444444444444444444444444432 3334444444
Q ss_pred HHHHhC---------CCHHHHHHHHhhccC---CChhhHHHHHHHHhcc--------CChhHHHHHHHHHHHcCCC---C
Q 044352 156 DMYSKC---------GLLCSARRVFHGMFE---RDVVSWTSMISGYCNV--------SKVDEAVVLFERMKLEGLE---P 212 (544)
Q Consensus 156 ~~~~~~---------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~ 212 (544)
.++... |++++|...|++..+ .+...|..+..+|... |++++|...|++..+.. + .
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 444444 455555555544432 2334445555555544 55666666666665542 1 2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 044352 213 NQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKG 274 (544)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (544)
+...|..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|+..+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45556666666666666666666666665543 33445566666666666666666655443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=6.4e-11 Score=111.75 Aligned_cols=266 Identities=10% Similarity=-0.031 Sum_probs=122.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHh----HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 044352 220 IIASYARRGDSNAAFAFFSRMTAEGFVPDLV----TWNAMISGFAQSKRENEALKLFKGMLVSGI-KPNN----VTVTGV 290 (544)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l 290 (544)
....+...|++++|...+++.....-..+.. .++.+...+...|++++|...+.+...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777777777777765543111211 344555666667777777777766654210 0111 112333
Q ss_pred HHHhhccCchHHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcC
Q 044352 291 LQAGGLTGSIQIGREIHALVCRM----GLH--IDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHG 364 (544)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 364 (544)
...+...|++++|...++...+. +.. |. ....+..+...+...|
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM------------------------------HEFLVRIRAQLLWAWA 149 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH------------------------------HHHHHHHHHHHHHHhc
Confidence 34444455555555554444332 100 10 1123334444455555
Q ss_pred ChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcC
Q 044352 365 MVDSSIELFERMLEEGMR--A--NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYA-----CVVDMLCRSG 435 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g 435 (544)
++++|...+++....... + ...++..+...+...|++++|...+++.............+. ..+..+...|
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 555555555555442111 0 123344444555555555555555555543211111111111 1222344556
Q ss_pred CHHHHHHHHHhCCC-CCC-----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC------chhHHHHHHHHHhcCCh
Q 044352 436 RMVEAYDLLRQVPM-YVT-----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK------PDGFVMLSNICAADGEW 503 (544)
Q Consensus 436 ~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 503 (544)
++++|...+++... .+. ...+..++..+...|++++|...++++++..+.. ..++..++.++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 66666655555431 110 1123444455555566666666666555443211 12444455555666666
Q ss_pred HHHHHHHHHHHh
Q 044352 504 HEAENLRKIMKE 515 (544)
Q Consensus 504 ~~A~~~~~~~~~ 515 (544)
++|...+++.++
T Consensus 310 ~~A~~~l~~al~ 321 (373)
T 1hz4_A 310 SDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=3.8e-12 Score=110.94 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHH
Q 044352 282 PNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIG 358 (544)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 358 (544)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987546778888899999999999999999997763 35678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCC--chhHHHHHHH
Q 044352 359 CYGKHGMVDSSIELFERMLEEGMRANE-------VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKI--SKEHYACVVD 429 (544)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 429 (544)
++...|++++|+..+++..+.. +.+. .++..+...+...|++++|+..|+++.+. .+. +...+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999999862 3345 45778888899999999999999999752 233 4678888888
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
+|...|+. .++++. ...+...+... .....+.+++|+..++++++++|+++.+...+..+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88776653 222221 12233333322 3445677999999999999999999998888877653
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=124.74 Aligned_cols=167 Identities=13% Similarity=0.016 Sum_probs=109.8
Q ss_pred CCCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc---------ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---
Q 044352 7 PINNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN---------DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--- 74 (544)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 74 (544)
+.+|....++..++..+...|++++|...++++++. +.... ++..++..+...|++++|+..+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVAT-MLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345556677888888888888888888888888873 22334 77778888888888888888877654
Q ss_pred --------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcc------c-ccCHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 044352 75 --------NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFI------Y-RCNKFTFSIVLKACVGLLDIKKGKQVHAVA 139 (544)
Q Consensus 75 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 139 (544)
+....++..+...+...|++++|+..++++.+.. . ......+..+...+...|++++|..+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123456677777777788888887777776531 1 112345666666677777777777777766
Q ss_pred HHc------CC-CCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 140 TQM------GF-ENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 140 ~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
.+. +. +....++..+..+|...|++++|...++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 11 112334555566666666666666666554
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=8e-12 Score=118.09 Aligned_cols=220 Identities=8% Similarity=-0.017 Sum_probs=138.5
Q ss_pred hccCchHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----c-----cHHHHHHHHHH
Q 044352 295 GLTGSIQIGREIHALVCRMGL--H---IDVFTGSALIDMYSKCGSLKDARTLFEITRI-----K-----NVASWNAMIGC 359 (544)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~ 359 (544)
...|++++|...+....+... . ....++..+...|...|+++.|...+++... + ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555554443210 0 1233555566666666776666666654331 1 12356777777
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh---CCCCchhHHHHHHHHH
Q 044352 360 YGKHGMVDSSIELFERMLEE----GMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERY---GVKISKEHYACVVDML 431 (544)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 431 (544)
|...|++++|.+.+++..+. +..+ ...++..+..++...|++++|...+++..+.. +.+....++..++.+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88888888888887777652 1111 12356677777888888888888888776521 2233356677788888
Q ss_pred HhcCCHHHHHHHHHhCC----C--CCC-hhHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 432 CRSGRMVEAYDLLRQVP----M--YVT-NSMAGAFRNGCNIHGR---RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 432 ~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
.+.|++++|...+++.. . .+. ...+..+...+...|+ +.+|+..+++. ...|.....+..++.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 88888888888887652 1 222 2344555556667777 77777777662 222444566778899999999
Q ss_pred ChHHHHHHHHHHHh
Q 044352 502 EWHEAENLRKIMKE 515 (544)
Q Consensus 502 ~~~~A~~~~~~~~~ 515 (544)
++++|..+++++.+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888865
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.4e-11 Score=103.36 Aligned_cols=169 Identities=18% Similarity=0.040 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSAC 395 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (544)
...+..+...+...|++++|...++.+.. .+...+..+...+...|++++|...++++.+. .+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 44566778888999999999999998875 36778899999999999999999999999886 355778888899999
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHH
Q 044352 396 SHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (544)
...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 45677888999999999999999999999874 4456788899999999999999999
Q ss_pred HHHHHHHHcCCCCchhH
Q 044352 474 TMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 474 ~~~~~~~~~~p~~~~~~ 490 (544)
..++++++.+|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999998776543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.4e-10 Score=109.60 Aligned_cols=165 Identities=9% Similarity=0.066 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----c----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI-----K----NVASWNAMIGCYGKHGMVDSSIELFERMLEE----GMRANE 385 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 385 (544)
..++..+..+|...|++++|...+++... . ...++..+..+|...|++++|...+++.... +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 34556667777777777777777665442 1 1236777888888899999999988888761 223346
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS---KEHYACVVDMLCRSGR---MVEAYDLLRQVPMYVT-NSMAGA 458 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 458 (544)
.++..+..++...|++++|...+++..+......+ ...+..+...|...|+ +.+|..++++....++ ...+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 67888888999999999999999998875322112 3345556666777788 8889999988653333 345667
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
++..|...|++++|...|+++++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999998754
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=6.2e-12 Score=127.03 Aligned_cols=164 Identities=9% Similarity=-0.070 Sum_probs=145.9
Q ss_pred CCCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHH
Q 044352 8 INNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNW 83 (544)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 83 (544)
..|.++.+|+.+..++.+.|++++|++.|+++++. |.+.. ++..++.+|.+.|++++|+..|++.. +.+..+|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35567889999999999999999999999999999 66677 99999999999999999999999876 667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 044352 84 MVMASAFTGNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCG 162 (544)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (544)
+..++...|++++|++.|++.++. .| +...|..+..++...|++++|+..+++.++.. +.+...+..+..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcc
Confidence 999999999999999999999985 44 56789999999999999999999999999986 667888999999999999
Q ss_pred CHHHHHHHHhhcc
Q 044352 163 LLCSARRVFHGMF 175 (544)
Q Consensus 163 ~~~~A~~~~~~~~ 175 (544)
++++|.+.++++.
T Consensus 160 ~~~~A~~~~~kal 172 (723)
T 4gyw_A 160 DWTDYDERMKKLV 172 (723)
T ss_dssp CCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999998887763
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=9.2e-12 Score=112.37 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI-----------KNVASWNAMIGCYGKHGMVDSSIELFERMLEE------GM 381 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 381 (544)
..++..+...+...|++++|...++.... ....++..+...+...|++++|...++++... ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555556666666666666666554331 12335666777777777777777777776653 11
Q ss_pred -CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC------
Q 044352 382 -RANEVTLISVLSACSHGGLVEKGLEIFRSMKERY------GVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP------ 448 (544)
Q Consensus 382 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 448 (544)
+....++..+...+...|++++|...++++.+.. ..+....++..++.+|...|++++|..+++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1234566777777778888888888777776531 122234567777778888888888888777652
Q ss_pred ----CCC-ChhHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 449 ----MYV-TNSMAGAFRNGCNIHG------RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 449 ----~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
..+ ....+..+...+...+ .+..+...++......|..+.++..++.+|...|++++|..+++++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112 2233333333333322 2334444444333344556678888999999999999999999988753
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=2.9e-10 Score=107.21 Aligned_cols=163 Identities=11% Similarity=-0.080 Sum_probs=108.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCH----hHH
Q 044352 182 WTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQF----TYNAIIASYARRGDSNAAFAFFSRMTAEGF-VPDL----VTW 252 (544)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 252 (544)
.......+...|++++|...+++........+.. .+..+...+...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778999999999999988764222222 456677788889999999999998764310 1122 235
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCC----CHHH
Q 044352 253 NAMISGFAQSKRENEALKLFKGMLVS----GIK--PN-NVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHI----DVFT 321 (544)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 321 (544)
..+...+...|++++|...+++.+.. +.. |. ...+..+...+...|++++|...+....+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778899999999999999998753 211 22 3345556777788888888888888877653221 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 044352 322 GSALIDMYSKCGSLKDARTLFEI 344 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~ 344 (544)
+..+...+...|++++|...++.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=5e-11 Score=106.23 Aligned_cols=183 Identities=11% Similarity=0.009 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-c---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-CCHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI--K-N---VASWNAMIGCYGKHGMVDSSIELFERMLEEGM-R-ANEVTLI 389 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~~ 389 (544)
+...+......+.+.|++++|...|+.+.. | + ...+..+..++...|++++|+..|++++.... . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666667777777777777777776653 2 2 45666777777777777777777777776421 1 1234555
Q ss_pred HHHHHHhc--------CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHH
Q 044352 390 SVLSACSH--------GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRN 461 (544)
Q Consensus 390 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 461 (544)
.+..++.. .|++++|...|+++.+.+ +.+......+.......++. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666666 777777777777776641 22222222211111000000 112456677
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhc----------CChHHHHHHHHHHHhcC
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAAD----------GEWHEAENLRKIMKEKN 517 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 517 (544)
.|...|++++|+..|+++++..|+++ .++..++.+|... |++++|+..|+++++..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88888888888888888888888744 4778888888866 88888888888888754
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.32 E-value=2.7e-12 Score=103.33 Aligned_cols=140 Identities=6% Similarity=-0.065 Sum_probs=93.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 044352 359 CYGKHGMVDSSIELFERMLEEGMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRM 437 (544)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (544)
.+...|++++|++.++..... .| +...+..+...|...|++++|++.|+++.+. .+.+...|..++.+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665442 22 2334455666677777777777777776653 244566677777777777777
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHH-HHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 438 VEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVT-MGEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 438 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
++|...|+++. .+.++.++..++..|...|++++|.+ +++++++++|+++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777776653 34456677778888888888776554 4588888888888888888888877775
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=2.6e-10 Score=98.82 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--cc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---HHH
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRI--KN----VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRAN-E---VTL 388 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~ 388 (544)
...+..++..+.+.|++++|...|+.+.. |+ ...+..++.++...|++++|+..|+++++. .|+ . ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 44455566667777777777777776553 21 245666677777777777777777777764 232 1 133
Q ss_pred HHHHHHHhc------------------CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 044352 389 ISVLSACSH------------------GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMY 450 (544)
Q Consensus 389 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (544)
..+..++.. .|++++|...|+++.+. .|.+............-.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH-------------
Confidence 334444432 34555666666555542 122222221111100000000
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP---DGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
......++..|...|++++|+..|+++++..|+++ .++..++.++.+.|++++|++.++++...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123566788899999999999999999999886 57999999999999999999999999876543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=7.1e-11 Score=106.99 Aligned_cols=170 Identities=9% Similarity=-0.051 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCc-----c----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----H
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRIK-----N----VASWNAMIGCYGKH-GMVDSSIELFERMLEEGMR-AN----E 385 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~ 385 (544)
++..+..+|...|++++|+..+++...- + ..+++.+...|... |++++|+..|++.++.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444555555555555444433310 0 23455666666664 7777777777766653100 01 2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh------
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK-----EHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTN------ 453 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~------ 453 (544)
.++..+...+...|++++|+..|+++.+...-.+.. ..+..++.++...|++++|...|++.. ..|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345666666777777777777777766531111111 135556666666677777777666653 22221
Q ss_pred hHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 454 SMAGAFRNGCN--IHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 454 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
..+..++.++. ..+++++|+..|+++++++|.+...+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 12233333333 34556666666666666666443333
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=8.2e-11 Score=104.81 Aligned_cols=205 Identities=13% Similarity=0.002 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c----cHH
Q 044352 281 KPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHID---VFTGSALIDMYSKCGSLKDARTLFEITRI--K----NVA 351 (544)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~ 351 (544)
+.+...+......+...|++++|...|+.+.+..+. + ..++..+..++.+.|++++|...|+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345677888888899999999999999999987532 3 67888899999999999999999998764 2 245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchh
Q 044352 352 SWNAMIGCYGK--------HGMVDSSIELFERMLEEGMRAN-EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKE 422 (544)
Q Consensus 352 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (544)
.+..+..++.. .|++++|+..|++++.. .|+ ...... ...+..+... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 77888888988 99999999999999986 343 222211 1111121111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHhhc----------CChHHHHHHHHHHHHcCCCCc
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP-MYV----TNSMAGAFRNGCNIH----------GRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 487 (544)
.+..++.+|.+.|++++|+..|+++. ..| ....+..++.+|... |++++|+..|+++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 35667888888999999988888763 122 245677777777765 899999999999999999987
Q ss_pred hh---HHHHHHHHHhcCChHHHH
Q 044352 488 DG---FVMLSNICAADGEWHEAE 507 (544)
Q Consensus 488 ~~---~~~l~~~~~~~g~~~~A~ 507 (544)
.+ ...+..++.+.|+++++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 54 455566666666655443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=7.2e-10 Score=98.08 Aligned_cols=181 Identities=6% Similarity=-0.032 Sum_probs=122.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 303 GREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----KNVASWNAMIGCYGKHGMVDSSIELFERML 377 (544)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 377 (544)
+...++++.+.+ .++...+..+..++...|++++|++++..... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 33445555777778888888888888877632 245577778888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHH--Hhc--CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 378 EEGMRA-----NEVTLISVLSA--CSH--GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 378 ~~~~~~-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
+. .| +..+...++.+ ... .++++.|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 56 35566666655 222 33788888888888653 3442222333337888888888888887542
Q ss_pred C------------CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHH
Q 044352 449 M------------YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 449 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
. +.++.+...++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 3355666566666666676 788889999999998887665
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=5.6e-11 Score=107.64 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=148.2
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------c--cHHHHHHHHHHHHhcCChHHH
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-------K--NVASWNAMIGCYGKHGMVDSS 369 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~~A 369 (544)
++++|...+... +..|...|++++|...|++... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477787777665 4457788999999888876543 1 145789999999999999999
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHH
Q 044352 370 IELFERMLEEGM---RA--NEVTLISVLSACSHG-GLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 370 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 439 (544)
+..+++.+.... .+ -..++..+..+|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876311 11 134788888999996 9999999999998774211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCCC---h-----hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh-----HHHHHHHHH--hcCCh
Q 044352 440 AYDLLRQVP-MYVT---N-----SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG-----FVMLSNICA--ADGEW 503 (544)
Q Consensus 440 A~~~~~~~~-~~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 503 (544)
|+..|+++. ..|+ . ..+..++.++...|++++|+..|+++++++|..+.. +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999863 2222 1 156777888999999999999999999999976653 445566665 45788
Q ss_pred HHHHHHHHHHHh
Q 044352 504 HEAENLRKIMKE 515 (544)
Q Consensus 504 ~~A~~~~~~~~~ 515 (544)
++|+..|+++.+
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 999988876543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1e-09 Score=97.16 Aligned_cols=175 Identities=11% Similarity=0.046 Sum_probs=137.8
Q ss_pred HHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044352 338 ARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGM-RANEVTLISVLSACSHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 338 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (544)
|+..|++... ++...+..+..++...|++++|++++.+.+..+- .-+...+...+..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677776653 4555667888999999999999999999877643 23667888899999999999999999999976
Q ss_pred HhCCCC-----chhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHc-
Q 044352 414 RYGVKI-----SKEHYACVVDM--LCRSG--RMVEAYDLLRQVP-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM- 482 (544)
Q Consensus 414 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 482 (544)
. .| +..+...++.+ ....| ++.+|..+|+++. ..|+......+..++.+.|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 55 35555666655 44445 9999999999985 3454233333444899999999999999988776
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 483 ---------GLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 483 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+|+|+.++..++.+....|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58899999899888888887 8999999998765
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=1.3e-10 Score=104.85 Aligned_cols=176 Identities=10% Similarity=-0.025 Sum_probs=141.7
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 044352 336 KDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERY 415 (544)
Q Consensus 336 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (544)
+.....+......+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344445555555556677778888889999999999999998862 446778888999999999999999999988653
Q ss_pred CCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC--chhH
Q 044352 416 GVKISKEHY-ACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK--PDGF 490 (544)
Q Consensus 416 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~ 490 (544)
.|+.... ......+...++.++|...++++. .+.+...+..++..+...|++++|+..|+++++.+|++ +.++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3444332 233334667788888888888764 55678899999999999999999999999999999988 8899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 491 VMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..++.++...|+.++|...|++.+.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999988764
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=1.4e-10 Score=91.28 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhh
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNI 465 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 465 (544)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|..+++++. .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344444555555566666655555543 22344455555566666666666666665542 23445567777778888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 466 HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.|++++|...++++++..|.++.++..++.++.+.|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8889999999999988888888888889999999999999999988887654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=2.4e-11 Score=123.46 Aligned_cols=169 Identities=11% Similarity=-0.074 Sum_probs=104.9
Q ss_pred HhcCCHHHHHHHHHhcC-----------CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044352 330 SKCGSLKDARTLFEITR-----------IKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHG 398 (544)
Q Consensus 330 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (544)
...|++++|++.+++.. ..+...+..+..++...|++++|+..++++++.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45666666666666554 2344566666666666677777777776666642 33555666666666666
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHH
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMG 476 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (544)
|++++|...|+++.+. .+.+...+..++.+|.+.|++++ .+.|+++. .+.+...+..++.++...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777666653 23345566666666667777666 66666653 3344556666666677777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 477 EEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 477 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
+++++++|.++.++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 77777777666666666666655444
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.25 E-value=6e-10 Score=95.42 Aligned_cols=162 Identities=8% Similarity=-0.069 Sum_probs=127.2
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHhCCCCchhH
Q 044352 348 KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGG----LVEKGLEIFRSMKERYGVKISKEH 423 (544)
Q Consensus 348 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 423 (544)
.++..+..+...|...+++++|+..|++..+.| ++..+..+...|.. + ++++|..+|++..+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456667777777777788888888888887754 55666677777776 5 788888888888653 35667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCchhHH
Q 044352 424 YACVVDMLCR----SGRMVEAYDLLRQVPMYVT----NSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 424 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
+..+...|.. .+++++|.++|++.....+ +.++..++..|.. .+++++|+.+|+++.++ |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888876 7889999999988753333 7788888888887 78999999999999988 66788999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 044352 492 MLSNICAAD-G-----EWHEAENLRKIMKEKNV 518 (544)
Q Consensus 492 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 518 (544)
.|+.+|... | ++++|+.+|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998865 3 89999999999988764
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.3e-11 Score=99.24 Aligned_cols=125 Identities=7% Similarity=-0.071 Sum_probs=104.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCC
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGR 468 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 468 (544)
|...+...|++++|+..++.... ..+.+...+..++..|.+.|++++|.+.|+++. .+.+..+|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34456677899999999988754 222335567789999999999999999999874 55678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHhcC
Q 044352 469 RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENL-RKIMKEKN 517 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 517 (544)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999987775 58888754
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.22 E-value=7.5e-11 Score=94.17 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+...+..++..+.+.|++++|...|+++. .+.++..|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 35567788888889999999999998874 5567888999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
.+.|++++|+..|+++++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998765
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=1.6e-08 Score=98.12 Aligned_cols=375 Identities=10% Similarity=-0.062 Sum_probs=206.9
Q ss_pred cCC-ChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCC-ChHHHHHHH
Q 044352 59 GCG-DVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLL-DIKKGKQVH 136 (544)
Q Consensus 59 ~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~ 136 (544)
+.| +++.|+.+|+... ..+-. |+++.+..+|++.+. ..|+...|...+....+.+ ..+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3667777776643 11111 889999999999887 3478888877777665555 245667777
Q ss_pred HHHHHc-CC-CCChhHHHHHHHHHHh----CCCHHHHHHHHhhccCCChh----hHHHHHHHHhccCChhHHHHHHHHHH
Q 044352 137 AVATQM-GF-ENDVSVGNALIDMYSK----CGLLCSARRVFHGMFERDVV----SWTSMISGYCNVSKVDEAVVLFERMK 206 (544)
Q Consensus 137 ~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (544)
+..+.. |. +.+..+|...+..+.. +++.+.+..+|++....... .|...... ....+...+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 777664 42 3456777777765542 35677788888887552111 22222211 11111222222222110
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCC--C-----HHHHHHHHHHHHHcC
Q 044352 207 LEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSK--R-----ENEALKLFKGMLVSG 279 (544)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~ 279 (544)
+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|++++...
T Consensus 151 ---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 122223333333221100012334444443322211 0 234556677666542
Q ss_pred CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC------------C
Q 044352 280 IKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITR------------I 347 (544)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~ 347 (544)
+.+...|...+.-+...|+.+.|..++++.... +.+...+...... .+.++. ...+.+... .
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC----------CHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhccc
Confidence 344556666666666677777777777777766 3333322221111 011110 111111110 0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHhCCCCchhHHHH
Q 044352 348 KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSH-GGLVEKGLEIFRSMKERYGVKISKEHYAC 426 (544)
Q Consensus 348 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (544)
.....|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+..
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~ 359 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 12246777777777778899999999998 32 12344555433322222 236899999999998863 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
.+......|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++++
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788899999999999984 3567788777777788999999998988875
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=4.5e-10 Score=101.18 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=127.9
Q ss_pred hcCChHHHHHHHHHhhhC-------CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHH
Q 044352 226 RRGDSNAAFAFFSRMTAE-------GFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVS------GIKPNNVTVTGVLQ 292 (544)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~ 292 (544)
..|++++|+.+|++..+. ..+....++..+...|...|++++|...++++++. +..|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------- 82 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP---------- 82 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----------
Confidence 455666665555554431 11223456667777777777777777777776643 1111
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------ccHHHHHHHHHHHH
Q 044352 293 AGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI-----------KNVASWNAMIGCYG 361 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~ 361 (544)
....++..+..++...|++++|...+++... ....++..+...+.
T Consensus 83 ------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 83 ------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 1223344444455555555555554443321 12345666777777
Q ss_pred hcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh-------CCCCchhHHHHH
Q 044352 362 KHGMVDSSIELFERMLEE------GMRA-NEVTLISVLSACSHGGLVEKGLEIFRSMKERY-------GVKISKEHYACV 427 (544)
Q Consensus 362 ~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l 427 (544)
..|++++|...++++... +..| ...++..+..++...|++++|..+++++.+.. ........+..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 777777777777777664 1122 34567777788888888888888888876531 011223334444
Q ss_pred HHHHHhcCC------HHHHHHHHHhCC-CCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 428 VDMLCRSGR------MVEAYDLLRQVP-MYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 428 ~~~~~~~g~------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
...+...+. +.++...++... ..| ...++..++..|...|++++|..+++++++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 444443332 344444455443 222 34577888889999999999999999998753
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=3.1e-10 Score=113.48 Aligned_cols=160 Identities=8% Similarity=-0.018 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 044352 332 CGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIF 408 (544)
Q Consensus 332 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (544)
.|++++|...+++... .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988774 356789999999999999999999999999862 446788999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc---CChHHHHHHHHHHHHcC
Q 044352 409 RSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH---GRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 483 (544)
++..+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+...+..++.++... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 35567889999999999999999999999874 445677888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 044352 484 LRKPDGFVMLS 494 (544)
Q Consensus 484 p~~~~~~~~l~ 494 (544)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=1.4e-10 Score=96.17 Aligned_cols=76 Identities=14% Similarity=0.017 Sum_probs=62.4
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 440 AYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK--PDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 440 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
|...++++. .+.+...+..++.++...|++++|+..|+++++.+|+. +.++..++.++...|+.++|...|++.+.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 455555442 34457788888889999999999999999999999865 55899999999999999999999998765
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.1e-09 Score=86.08 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDML 431 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (544)
.|..++..+...|++++|..+++++.... +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888999999888888763 446677778888888889999999999888774 345567788888889
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 432 CRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 432 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999988764 3446778888888999999999999999999998885
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=9.5e-10 Score=93.92 Aligned_cols=128 Identities=9% Similarity=-0.023 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044352 354 NAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR 433 (544)
Q Consensus 354 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (544)
..+..++...|++++|+..|++.++.. +.+...+..+..++...|++++|...|+++.+. .|.+...+..++.+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 338889999999999999999999863 447788999999999999999999999999884 35567888889888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCh--hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 434 SGR--MVEAYDLLRQVPMYVTN--SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 434 ~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
.|. ...+...++.+. .|++ ..+...+.++...|++++|+..|+++++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 445666776664 3333 34555666778889999999999999999995
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=5.8e-10 Score=113.37 Aligned_cols=179 Identities=11% Similarity=-0.015 Sum_probs=137.7
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHh--------hc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CC
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLC--------TN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NP 76 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 76 (544)
+|.++.++.... ...|++++|++.+++++ +. |.+.. ++..++.++...|++++|+..|+++. +.
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE-LPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 344444444333 67889999999999998 66 55666 88889999999999999999998876 66
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 044352 77 NVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALID 156 (544)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 156 (544)
+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|++++ ...++++.+.+ +.+...+..+..
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 778888889999999999999999999887432 255677888888888999999 99999888875 567778888888
Q ss_pred HHHhCCCHHHHHHHHhhccCCC---hhhHHHHHHHHhccCC
Q 044352 157 MYSKCGLLCSARRVFHGMFERD---VVSWTSMISGYCNVSK 194 (544)
Q Consensus 157 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 194 (544)
++.+.|++++|...|+++.+.+ ...+..+..++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999887633 3456666666655554
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.14 E-value=3.4e-10 Score=87.69 Aligned_cols=94 Identities=9% Similarity=-0.024 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
.+...+..|.+.|++++|++.|+++. .+.+..+|..++.++...|++++|+..++++++++|+++.+|..+|.++...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34444555555555555555555442 2334445555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhc
Q 044352 501 GEWHEAENLRKIMKEK 516 (544)
Q Consensus 501 g~~~~A~~~~~~~~~~ 516 (544)
|++++|++.|+++++.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555555543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=8.2e-10 Score=91.54 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=99.8
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHH
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVM 86 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 86 (544)
|.+...+...+..+...|++++|...++++++. |.+.. ++..++.++...|++++|+..|+++. .|++..+..+..
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-VKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-HHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence 444567788888888999999999999998888 66777 88889999999999999999998887 234433322221
Q ss_pred H-HHhcCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhCCC
Q 044352 87 A-SAFTGNFQEAIGYFSLMREFIYRC-NKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFEN-DVSVGNALIDMYSKCGL 163 (544)
Q Consensus 87 ~-~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 163 (544)
. +...+...+|+..+++..+. .| +...+..+...+...|++++|...++.+.+....+ +...+..+..++...|+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 1 11222223456666666653 23 34555555666666666666666666666553111 23355555555555566
Q ss_pred HHHHHHHHhh
Q 044352 164 LCSARRVFHG 173 (544)
Q Consensus 164 ~~~A~~~~~~ 173 (544)
.++|...|++
T Consensus 160 ~~~A~~~y~~ 169 (176)
T 2r5s_A 160 GNAIASKYRR 169 (176)
T ss_dssp SCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5555555543
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=7.5e-10 Score=85.69 Aligned_cols=110 Identities=8% Similarity=-0.138 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGC 463 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 463 (544)
..+......+.+.|++++|++.|++..+. .+.+...|..++.+|.+.|++++|++.++++. .+.+..+|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 35666777788888888888888888764 35567788888888888888888888888764 455678899999999
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 464 NIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
...|++++|+..|+++++++|+++.++..++.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999998887653
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.1e-07 Score=92.29 Aligned_cols=373 Identities=8% Similarity=-0.072 Sum_probs=210.0
Q ss_pred ccc-hhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHHHHHhcCC-HHHHHHH
Q 044352 25 KSK-ALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVMASAFTGN-FQEAIGY 100 (544)
Q Consensus 25 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~A~~~ 100 (544)
+.| +++.|..+|+.++..-|. |+++.+..+|++.. -|++..|...+....+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 346 478888888888877222 67888888888876 4678888888877766663 3556677
Q ss_pred HHHHHhc-cccc-CHHHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 101 FSLMREF-IYRC-NKFTFSIVLKACVG----LLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 101 ~~~~~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
|+..+.. |..| +...|...+..+.. .++.+.+..+|++.+......-...|......-.. .....+..++.+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH
Confidence 7777653 3222 44566666665432 35677888888888874211112223322221111 1122222222211
Q ss_pred cCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--C-----hHHHHHHHHHhhhCCCCC
Q 044352 175 FERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRG--D-----SNAAFAFFSRMTAEGFVP 247 (544)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~ 247 (544)
. +.+..|..++..+...-...+...|...+..-...+ - .+.+..+|+++.... +.
T Consensus 150 ~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 L-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred h-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 0 122333333333321100012223433333322110 0 234566777766543 45
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC------------C
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMG------------L 315 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~ 315 (544)
+...|...+..+.+.|+.++|..+|.+.+.. |....+......+...+ .. ++.+.+.- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---HHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---HHHHHHHHHhhccchhhhhcc
Confidence 5677777777777788888888888888766 33322221111111111 11 12221110 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--cHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044352 316 HIDVFTGSALIDMYSKCGSLKDARTLFEITRIK--NVASWNAMIGCYGK-HGMVDSSIELFERMLEEGMRANEVTLISVL 392 (544)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 392 (544)
.....+|...+....+.++.+.|..+|++...+ +...|...+..-.. .++.+.|..+|+...+. .+-++..+...+
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yi 361 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 112345667777777788899999999988433 23344433332222 33699999999999886 333455566667
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 393 SACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
......|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++.
T Consensus 362 d~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77778899999999998862 25677888887777889999998888765
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=2.5e-09 Score=97.54 Aligned_cols=219 Identities=9% Similarity=-0.050 Sum_probs=144.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044352 262 SKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTL 341 (544)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 341 (544)
.|++++|.+++++..+.. +.. .+...++++.|...|..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 355666666666655431 110 011135666666555543 3455566777777666
Q ss_pred HHhcCCc-----c----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcCCchHHHHHH
Q 044352 342 FEITRIK-----N----VASWNAMIGCYGKHGMVDSSIELFERMLEEGM---RAN--EVTLISVLSACSHGGLVEKGLEI 407 (544)
Q Consensus 342 ~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~ 407 (544)
|.+...- + ..+|+.+...|...|++++|+..|++.++.-. .+. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 6544421 1 23677888888889999999999988765310 121 3467778888888 999999999
Q ss_pred HHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHhhcCChHHHHHH
Q 044352 408 FRSMKERYGVKI----SKEHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNGCNIHGRRDLAVTM 475 (544)
Q Consensus 408 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 475 (544)
|++..+...-.. ...++..++.+|.+.|++++|+..|+++. ..+. ...+..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876421111 14578888999999999999999998863 1111 22556666677788999999999
Q ss_pred HHHHHHcCCCCchh-----HHHHHHHHHhcCChHHHHH
Q 044352 476 GEEFFEMGLRKPDG-----FVMLSNICAADGEWHEAEN 508 (544)
Q Consensus 476 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 508 (544)
|++++ ++|..... +..++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88876543 34455555 5677766655
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=7e-10 Score=94.76 Aligned_cols=156 Identities=7% Similarity=-0.016 Sum_probs=114.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHH----------------HHHHHhcCCchHHHHHHHHHHHHHhCCCC
Q 044352 357 IGCYGKHGMVDSSIELFERMLEEGMRA-NEVTLIS----------------VLSACSHGGLVEKGLEIFRSMKERYGVKI 419 (544)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 419 (544)
...+...|++++|+..|++.+.. .| +...+.. +..++...|++++|+..|++..+. .|.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 86 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APN 86 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC
Confidence 33445555555555555555553 22 2333444 888899999999999999999885 355
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCC--hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGR--RDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
+...+..++.+|...|++++|...|+++. .+.+..++..++.+|...|+ .+.+...++++....| ....+..++.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHH
Confidence 78899999999999999999999999874 45567889999888876653 4556667776654333 2235667788
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 044352 496 ICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++...|++++|+..|+++++..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=2e-08 Score=89.97 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-----
Q 044352 364 GMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVE--KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR----- 436 (544)
Q Consensus 364 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 436 (544)
+++++++.+++++.+.. +-|..++..-...+...|.++ +++++++++.+. .+-+...|+.-..++...|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44455555555555431 334444444444444444444 555555555442 22333444444444444443
Q ss_pred -HHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCCh-HHHHHHHHHHHHcC---CCCchhHHHHHHHHHhcCChHHHHHH
Q 044352 437 -MVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRR-DLAVTMGEEFFEMG---LRKPDGFVMLSNICAADGEWHEAENL 509 (544)
Q Consensus 437 -~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (544)
++++++.++++. .+.+..+|+.+...+.+.|+. +.+..+.+++++++ |.++.++..++.+|.+.|+.++|+++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 455555554432 334455555555555444442 22334444444443 55555555555555555555556555
Q ss_pred HHHHHh
Q 044352 510 RKIMKE 515 (544)
Q Consensus 510 ~~~~~~ 515 (544)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.11 E-value=2.2e-10 Score=91.65 Aligned_cols=98 Identities=16% Similarity=0.044 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+...+..++..+...|++++|...|+++. .+.+...|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34556666777777777777777777653 3446667777777777778888888888888888887777777788888
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|++++|+..|+++++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 88888888888777777643
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=3.3e-09 Score=91.03 Aligned_cols=130 Identities=8% Similarity=-0.116 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM 430 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (544)
..+..+...+...|++++|+..|++.. .|+..++..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345667777888888888888888763 567788888888888888888888888888774 34566778888888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCh----------------hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 431 LCRSGRMVEAYDLLRQVP--MYVTN----------------SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~--~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
|...|++++|.+.|+++. .+.+. ..+..++.++...|++++|...++++++++|.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888887763 22222 567778888888888888888888888888865
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=2e-09 Score=96.96 Aligned_cols=160 Identities=9% Similarity=-0.065 Sum_probs=96.6
Q ss_pred ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHH
Q 044352 43 DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIV 119 (544)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 119 (544)
|.+.. .+..++..+...|++++|+..|+++. |.+...+..+...+...|++++|+..++++... .|+.......
T Consensus 114 p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEE-LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchh-hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 33444 56666666666666666666666654 445556666666666666666666666666553 3333322222
Q ss_pred -HHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC--CC---hhhHHHHHHHHhccC
Q 044352 120 -LKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE--RD---VVSWTSMISGYCNVS 193 (544)
Q Consensus 120 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~ 193 (544)
...+...++.+.|...+++..... |.+...+..+..++...|++++|...|.++.+ |+ ...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222445555666666666666654 55566666667777777777777777766644 22 445666777777777
Q ss_pred ChhHHHHHHHHHH
Q 044352 194 KVDEAVVLFERMK 206 (544)
Q Consensus 194 ~~~~a~~~~~~~~ 206 (544)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777776666544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=2.5e-08 Score=90.21 Aligned_cols=162 Identities=9% Similarity=-0.043 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHH
Q 044352 354 NAMIGCYGKHGMVDSSIELFERMLEEGM-RANEV----TLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHY 424 (544)
Q Consensus 354 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 424 (544)
...+..+...|++++|...+++...... .|+.. .+..+...+...|++++|+..++++.+.....++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346677888999999999999887421 22211 2334666677788999999999998873122222 2368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC------chh
Q 044352 425 ACVVDMLCRSGRMVEAYDLLRQVP-----MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK------PDG 489 (544)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 489 (544)
+.++.+|...|++++|...|+++. .+.+ ..++..++..|...|++++|+..+++++++.+.. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 889999999999999999988763 1112 2367888999999999999999999999876433 568
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 044352 490 FVMLSNICAADGE-WHEAENLRKIMKE 515 (544)
Q Consensus 490 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 515 (544)
+..+|.++.+.|+ +++|++.++++++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999999875
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=1.4e-09 Score=99.16 Aligned_cols=197 Identities=7% Similarity=-0.063 Sum_probs=150.3
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044352 296 LTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFER 375 (544)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 375 (544)
..|++++|..++++..+.... . .+...++++.|...|.. .+..|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788888888887764321 1 01114788888887765 35678889999999999998
Q ss_pred HHHcC--C-CC--CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCC--C--chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 376 MLEEG--M-RA--NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVK--I--SKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 376 ~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
..+.. . .+ -..++..+...|...|++++|+..+++..+.+.-. + ...++..++.+|.. |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87631 1 11 13478888889999999999999999987643211 1 14577888999988 999999999988
Q ss_pred CC----CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 447 VP----MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP------DGFVMLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 447 ~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (544)
+. ...+ ..++..++..+...|++++|+..|++++++.|.+. .++..++.++...|++++|+..|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 63 1111 45778889999999999999999999999876543 3677788899999999999999999
Q ss_pred HH
Q 044352 513 MK 514 (544)
Q Consensus 513 ~~ 514 (544)
.+
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=2.9e-09 Score=106.34 Aligned_cols=146 Identities=8% Similarity=-0.067 Sum_probs=75.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044352 298 GSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFE 374 (544)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 374 (544)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+ .+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666655543 22455556666666666666666666665443 234556666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 044352 375 RMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRS---GRMVEAYDLLRQV 447 (544)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 447 (544)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..++.++... |++++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666542 334555666666666666666666666666553 233445556666666666 6666666666554
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=1.9e-07 Score=83.55 Aligned_cols=194 Identities=5% Similarity=-0.044 Sum_probs=140.3
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChH-
Q 044352 299 SIQIGREIHALVCRMGLHIDVFTGSALIDMY----SKC---GSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVD- 367 (544)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~- 367 (544)
+++++...++.+....+. +..+|+.-..++ ... +++++++.+++.+.. ++..+|+.-..++.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 455555555554444322 333333333333 333 667777777776663 46667777777777788887
Q ss_pred -HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-
Q 044352 368 -SSIELFERMLEEGMRANEVTLISVLSACSHGGL------VEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE- 439 (544)
Q Consensus 368 -~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 439 (544)
++++.++++++.. +-|...|+.-...+...+. ++++++.++++... .+-|...|+.+...+.+.|+..+
T Consensus 163 ~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHH
Confidence 9999999999874 4577778777777777776 89999999998874 46678888888888988888554
Q ss_pred HHHHHHhCCC-----CCChhHHHHHHHHHhhcCChHHHHHHHHHHHH-cCCCCchhHHHHHHH
Q 044352 440 AYDLLRQVPM-----YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFE-MGLRKPDGFVMLSNI 496 (544)
Q Consensus 440 A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~ 496 (544)
+.++..++.. ..++.++..++.++.+.|+.++|+++++.+.+ .+|.....|...+..
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 5567776641 44677888999999999999999999999997 799888888876653
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=4e-09 Score=86.31 Aligned_cols=127 Identities=9% Similarity=-0.099 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHh
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCN 464 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 464 (544)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555566666777777777777777663 24456677777777777888888887777653 3446678888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 044352 465 IHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI--CAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 515 (544)
..|++++|+..++++++.+|.++.++..++.+ +.+.|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999888555544 8889999999999988754
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=1.7e-08 Score=91.42 Aligned_cols=163 Identities=9% Similarity=-0.034 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----h
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANE------VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----K 421 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 421 (544)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|...+++..+......+ .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44456667788888888888888877752 2122 12334555667788999999988888653111111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC------C
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP----MYVT-----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR------K 486 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~ 486 (544)
.+++.++..|...|++++|...++++. ..++ ..++..++..|...|++++|+..+++++++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888889999999999998887753 1112 257888888999999999999999999886532 1
Q ss_pred chhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 044352 487 PDGFVMLSNICAADGEWHEA-ENLRKIMKE 515 (544)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 515 (544)
..++..+|.+|.+.|++++| ..++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777888764
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.2e-08 Score=88.19 Aligned_cols=185 Identities=10% Similarity=-0.043 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--c-cH---HHHH
Q 044352 283 NNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLHI--DVFTGSALIDMYSKCGSLKDARTLFEITRI--K-NV---ASWN 354 (544)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~ 354 (544)
+...+......+...|++++|...|+.+.+..+.. ....+..++.++.+.|++++|+..|+++.. | +. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556677788899999999999999999875332 245788889999999999999999998764 2 22 2555
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 044352 355 AMIGCYGK------------------HGMVDSSIELFERMLEEGMRANE-VTLISVLSACSHGGLVEKGLEIFRSMKERY 415 (544)
Q Consensus 355 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (544)
.+..++.. .|++++|+..|+++++. .|+. ...... ..+..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 56666554 57899999999999985 4443 222211 111111110
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 416 GVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
.......++..|.+.|++++|+..|+++. ..|+ ..++..++.++.+.|++++|+..++.+....|++..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123456788999999999999999874 2233 256888889999999999999999999998887654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=2.4e-09 Score=85.04 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAA 499 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 499 (544)
..+..++..+.+.|++++|...|+++. .+.+...|..++.++...|++++|+..|+++++++|+++.++..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344555566666666666666666553 344556666666677777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhc
Q 044352 500 DGEWHEAENLRKIMKEK 516 (544)
Q Consensus 500 ~g~~~~A~~~~~~~~~~ 516 (544)
.|++++|+..|+++++.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=1.5e-09 Score=90.12 Aligned_cols=121 Identities=6% Similarity=0.056 Sum_probs=52.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCH--HH
Q 044352 363 HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM-LCRSGRM--VE 439 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 439 (544)
.|++++|...+++..... +.+...+..+...+...|++++|...|+++.+. .+.+...+..++.+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445555555555554431 234444555555555555555555555555442 12233344444444 3344444 44
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 044352 440 AYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK 486 (544)
Q Consensus 440 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 486 (544)
|...++++. .+.+...+..++..+...|++++|+..++++++.+|++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 444444432 22223344444444444444444444444444444443
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=3.6e-09 Score=82.06 Aligned_cols=97 Identities=8% Similarity=-0.106 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
...+..++..+.+.|++++|...|+++. .+.+...+..++.++...|++++|+..++++++++|.++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455566666667777777777776653 34456667777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhcC
Q 044352 499 ADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~ 517 (544)
..|++++|+..|+++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 7777777777777776543
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=7.5e-09 Score=80.67 Aligned_cols=118 Identities=9% Similarity=-0.088 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
...+..+...+...|+++.|...++++... .+.+...+..++.++...|++++|.+.++++. .+.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666667777777777777777653 23456667777777777777777777777653 34456677888888
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWH 504 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 504 (544)
+...|++++|...++++++.+|.++.++..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999998888753
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=1.7e-09 Score=86.32 Aligned_cols=107 Identities=12% Similarity=-0.016 Sum_probs=65.3
Q ss_pred HHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 044352 34 QVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIY 109 (544)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (544)
..++++++. |.+.. ++..++..+.+.|++++|+..|+++. |.++..|..+..++...|++++|+..|++..+...
T Consensus 23 ~~l~~al~l~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 344444555 44444 66666666666666666666666654 45556666666666666666666666666666321
Q ss_pred ccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 044352 110 RCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 110 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 142 (544)
.+...|..+..++...|++++|...|+...+.
T Consensus 102 -~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 -NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13455666666666666666666666666665
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=6.9e-09 Score=81.21 Aligned_cols=116 Identities=5% Similarity=-0.086 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
...+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|...++++. .+.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 33444455555555555555555555543 122344455555555555555555555555442 23345566667777
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGE 502 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 502 (544)
+...|++++|+..++++++.+|.++.++..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7777778888888888877777777777777777766653
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.3e-07 Score=80.70 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=99.7
Q ss_pred HHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----chHHHHHHHH
Q 044352 233 AFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTG----SIQIGREIHA 308 (544)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 308 (544)
|++.|++..+. -++..+..+...|...+++++|+.+|++..+.| +...+..+...+.. + ++++|...++
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 34444444443 244455555555555555556665555555443 33444444444444 4 5566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcCCcc-----HHHHHHHHHHHHh----cCChHHHHHHHHH
Q 044352 309 LVCRMGLHIDVFTGSALIDMYSK----CGSLKDARTLFEITRIKN-----VASWNAMIGCYGK----HGMVDSSIELFER 375 (544)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~A~~~~~~ 375 (544)
...+.+ ++..+..+...|.. .+++++|..+|++....+ +..+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555543 44555566666655 667777777777666532 4567777777776 6677888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC-C-----chHHHHHHHHHHHHH
Q 044352 376 MLEEGMRANEVTLISVLSACSHG-G-----LVEKGLEIFRSMKER 414 (544)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 414 (544)
..+. ..+...+..+...|... | ++++|..+|++..+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7774 23444555566665432 2 778888888777665
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=2.3e-08 Score=85.73 Aligned_cols=124 Identities=9% Similarity=-0.042 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGL 400 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (544)
.+..+...+...|++++|...|+....++...|..+..++...|++++|+..+++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566677778888888888887777777778888888888888888888888877752 4466677777778888888
Q ss_pred hHHHHHHHHHHHHHhCCCCc----------------hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 401 VEKGLEIFRSMKERYGVKIS----------------KEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
+++|...|+++.+. .+.+ ...+..++.+|...|++++|.+.|+++
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887763 2222 256777777888888888888888775
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.96 E-value=5.2e-09 Score=96.56 Aligned_cols=95 Identities=7% Similarity=-0.147 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
...|..++.+|.+.|++++|+..++++. .+.+..++..++.+|...|++++|+..|+++++++|.++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888889999999998888874 45567889999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHHh
Q 044352 499 ADGEWHEA-ENLRKIMKE 515 (544)
Q Consensus 499 ~~g~~~~A-~~~~~~~~~ 515 (544)
+.|++++| ...|++|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 446676653
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=1.4e-08 Score=78.40 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|..+++++. .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666666777777777777776653 23445566667777777777777777776653 34456677778888
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG 501 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 501 (544)
+...|++++|...++++++.+|.++.++..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999998888888888888888776654
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.95 E-value=3.4e-09 Score=81.33 Aligned_cols=95 Identities=7% Similarity=-0.135 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD 500 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 500 (544)
.+..++..+.+.|++++|...|+++. .+.+...|..++.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667788889999999999998874 4557888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 044352 501 GEWHEAENLRKIMKEKN 517 (544)
Q Consensus 501 g~~~~A~~~~~~~~~~~ 517 (544)
|++++|+..++++++.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998654
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=2.8e-09 Score=95.68 Aligned_cols=192 Identities=8% Similarity=-0.033 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044352 318 DVFTGSALIDMYSKCGSLKDARTLFEITRI---KNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSA 394 (544)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (544)
+...+..+...+...|++++|...|+.... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566677777778888888888876552 356678888888888888888888888887752 4466778888888
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHH
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISK-EHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (544)
+...|++++|...|++..+. .|+. ..+...+....+..+...... ......+.+......+.. + ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 88888888888888887664 1211 111111111111111111111 222233444444444432 2 368999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhc
Q 044352 474 TMGEEFFEMGLRKPDGFVMLSNICAAD-GEWHEAENLRKIMKEK 516 (544)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 516 (544)
+.++++++.+|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998888888887777776 7899999999988764
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=2.5e-09 Score=85.44 Aligned_cols=107 Identities=10% Similarity=-0.086 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRN 461 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 461 (544)
+...+..+...+...|++++|...|+++... .+.+...|..++.+|...|++++|...|+++. .+.++..+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4456666777788888888888888888764 35567788888888888899999988888864 4556778889999
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
++...|++++|+..|+++++++|+++.....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 9999999999999999999999988876443
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.93 E-value=8.3e-09 Score=77.89 Aligned_cols=99 Identities=15% Similarity=-0.015 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC--CchhHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR--KPDGFVMLSN 495 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 495 (544)
+...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|+..++++++.+|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45566777788888888888888887763 3456778888888999999999999999999999999 9999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCC
Q 044352 496 ICAAD-GEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 496 ~~~~~-g~~~~A~~~~~~~~~~~~ 518 (544)
++.+. |++++|++.++++.+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999987654
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=1.1e-09 Score=92.85 Aligned_cols=169 Identities=9% Similarity=-0.084 Sum_probs=101.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 044352 328 MYSKCGSLKDARTLFEITRIK---NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKG 404 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (544)
.....|+++.+.+.++..... ....+..+...+...|++++|+..|++.+.. .|+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~------------- 77 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ------------- 77 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH-------------
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh-------------
Confidence 334455666666555533321 2335666666677777777777777777663 1211000000
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044352 405 LEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
....-.. ......+..++.+|...|++++|...++++. .+.+..++..++.++...|++++|+..|++++++
T Consensus 78 --~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 78 --ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp --HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0000000 0013567778888888888888888888764 4456778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhcC
Q 044352 483 GLRKPDGFVMLSNICAADGEWHEAE-NLRKIMKEKN 517 (544)
Q Consensus 483 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 517 (544)
+|.++.++..++.++...|+.+++. ..++.+...+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998888 5666666544
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.91 E-value=8.6e-09 Score=84.21 Aligned_cols=111 Identities=9% Similarity=-0.144 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRN 461 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 461 (544)
+...+..+...+...|++++|+..|++..+. .+.+...+..++.+|.+.|++++|+..|+++. .+.+...+..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999998874 34567888889999999999999999998874 4556778888999
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
++...|++++|+..|+++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999988866655443
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.91 E-value=6.6e-09 Score=80.53 Aligned_cols=95 Identities=7% Similarity=-0.111 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch-------hHHH
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD-------GFVM 492 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 492 (544)
..+..++..+.+.|++++|++.|+++. .+.+..++..++.+|...|++++|+..++++++++|+++. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 456677778888888888888887763 4455677888888888888888888888888888876543 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 044352 493 LSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+|.++...|++++|++.|++.++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888888888888888887764
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.89 E-value=1.9e-08 Score=79.20 Aligned_cols=99 Identities=9% Similarity=-0.100 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 419 ISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.+...+..++..+...|++++|...|+++. .+.+...+..++.++...|++++|+..++++++++|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345566666666777777777777766653 344566677777777777778888888888877777777777778888
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 044352 497 CAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+...|++++|+..++++++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888887777776543
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.88 E-value=2.7e-08 Score=86.90 Aligned_cols=122 Identities=9% Similarity=-0.071 Sum_probs=55.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCh----hHHHHHHHHHhhcC
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTN----SMAGAFRNGCNIHG 467 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g 467 (544)
...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....+++ ..+..++.++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 33444455555555555444321 122223333444445555555555555443322211 23444444555555
Q ss_pred ChHHHHHHHHHHHHcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 468 RRDLAVTMGEEFFEMG--LR-KPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 468 ~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
++++|+..|+++.... |. .+.+...++.++.+.|+.++|...|+++...
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555554322 22 2234445555555555555555555555443
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3e-08 Score=76.75 Aligned_cols=112 Identities=6% Similarity=-0.179 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGC 463 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 463 (544)
..+......+...|++++|+..|++..+. .+.+...+..++.+|.+.|++++|...++++. .+.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45566666777778888888888777764 34456777778888888888888888887763 445677888889999
Q ss_pred hhcCChHHHHHHHHHHHHcC------CCCchhHHHHHHHHHh
Q 044352 464 NIHGRRDLAVTMGEEFFEMG------LRKPDGFVMLSNICAA 499 (544)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 499 (544)
...|++++|+..|+++++++ |.++.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 8888888877766543
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=3.3e-08 Score=81.88 Aligned_cols=123 Identities=10% Similarity=0.053 Sum_probs=103.5
Q ss_pred HhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH-HhhcCCh--
Q 044352 395 CSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG-CNIHGRR-- 469 (544)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~-- 469 (544)
+...|++++|...+++..+. .+.+...+..++.+|...|++++|...|+++. .+.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 35678899999999998874 35577889999999999999999999999874 34567788888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 470 DLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
++|+..++++++.+|.++.++..++.++...|++++|+..++++++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999987543
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.4e-08 Score=79.26 Aligned_cols=110 Identities=9% Similarity=-0.095 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 044352 385 EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNG 462 (544)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 462 (544)
...+..+...+...|++++|...|+++... .+.+...|..++.+|...|++++|...|+++. .+.++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345555666777788888888888887764 34566777788888888888888888888764 45567788888999
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 463 CNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
+...|++++|+..|+++++++|+++........+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999888776554433
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=6.5e-08 Score=73.61 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhh
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNI 465 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 465 (544)
+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...++++. .+.+...+..++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444445555555554444432 12233344444444444444444444444432 12233444445555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 466 HGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.|++++|...++++++.+|.++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555544444433
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=4.5e-08 Score=74.53 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
....+..++..+...|++++|...++++. .+.+...+..++..+...|++++|...++++++.+|.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35567888899999999999999999874 4557788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|++++|...++++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999998754
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=6.2e-07 Score=81.00 Aligned_cols=159 Identities=9% Similarity=-0.037 Sum_probs=118.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCc-----cH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 044352 325 LIDMYSKCGSLKDARTLFEITRIK-----NV----ASWNAMIGCYGKHGMVDSSIELFERMLEEGMR-AN----EVTLIS 390 (544)
Q Consensus 325 l~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 390 (544)
.+..+...|++++|..+++..... +. ..+..+...+...|++++|+..++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 456677888999998888775531 11 13344666777788999999999999884222 22 236888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhC----CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-hhHHH
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYG----VKI-SKEHYACVVDMLCRSGRMVEAYDLLRQVP-------MYVT-NSMAG 457 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 457 (544)
+..+|...|++++|...++++.+... ..+ ...++..++.+|.+.|++++|.+.++++. ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 89999999999999999999875321 111 23477889999999999999999998763 1122 56788
Q ss_pred HHHHHHhhcCC-hHHHHHHHHHHHHcC
Q 044352 458 AFRNGCNIHGR-RDLAVTMGEEFFEMG 483 (544)
Q Consensus 458 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 483 (544)
.++.++...|+ +++|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999995 699999999998743
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=9.5e-08 Score=83.44 Aligned_cols=140 Identities=11% Similarity=-0.017 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc--hhHHHHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS--KEHYACVVD 429 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 429 (544)
.+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHH
Confidence 3445566677778888888888777653 344335555555777888888888888755321 1111 346777888
Q ss_pred HHHhcCCHHHHHHHHHhCCCC---C--ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVPMY---V--TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
++...|++++|+..|++.... | ....+...+.++.+.|+.++|...|++++..+|. +.+...|...
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 888899999999888877322 3 2346777888899999999999999999999998 7766666443
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=3.5e-08 Score=77.06 Aligned_cols=100 Identities=9% Similarity=-0.051 Sum_probs=90.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSN 495 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 495 (544)
+.+...+..++..+...|++++|...++++. .+.+...+..++.++...|++++|+..++++++.+|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4456778889999999999999999999863 34467889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 044352 496 ICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++.+.|++++|+..++++.+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=5.1e-08 Score=79.51 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
+...+..++..+.+.|++++|++.|+++. .+.+...+..++.+|...|++++|+..++++++++|.++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45567777777888888888888887763 3446677777777888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 044352 498 AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~ 517 (544)
...|++++|+..|+++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888877654
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=3e-07 Score=83.10 Aligned_cols=163 Identities=8% Similarity=-0.056 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---ccH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRI---KNV------ASWNAMIGCYGKHGMVDSSIELFERMLEEGM---RAN--EV 386 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 386 (544)
.+...+..+...|++++|.+.++.... ... ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888777764331 111 2344456667778899999999988876321 111 34
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-Ch
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS-----KEHYACVVDMLCRSGRMVEAYDLLRQVP-------MYV-TN 453 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 453 (544)
++..+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|.+.+++.. ... ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888889999999999999888732111222 2578888899999999999999988753 111 15
Q ss_pred hHHHHHHHHHhhcCChHHH-HHHHHHHHHcC
Q 044352 454 SMAGAFRNGCNIHGRRDLA-VTMGEEFFEMG 483 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 483 (544)
.++..++.+|...|++++| ...+++++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5778888899999999999 78899887643
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=1.1e-07 Score=80.62 Aligned_cols=93 Identities=12% Similarity=-0.053 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCC-C----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC--CCc----
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP----MYV-T----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL--RKP---- 487 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~---- 487 (544)
.+..++..|...|++++|.+.+++.. ..+ + ...+..++..+...|++++|...+++++++.+ .++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 34444444555555555544444331 011 1 22345555666666777777777777665431 111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
.++..++.++...|++++|...+++.++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2345667777777777777777776654
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.78 E-value=3.9e-08 Score=77.35 Aligned_cols=93 Identities=12% Similarity=-0.079 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC--------C-----hhHHHHHHHHHhhcCChHHHHHHHHHHHHc-------
Q 044352 424 YACVVDMLCRSGRMVEAYDLLRQVP-MYV--------T-----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEM------- 482 (544)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 482 (544)
+...+..+.+.|++++|+..|+++. ..| + ...|..++.++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444555555555555555442 111 1 237888888999999999999999999999
Q ss_pred CCCCchhH----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 483 GLRKPDGF----VMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 483 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+|+++.+| ...|.++...|++++|+..|++.++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999864
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=7.5e-08 Score=74.10 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|+.+++++++.+|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999874 44567788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcC
Q 044352 499 ADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~ 517 (544)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=4.4e-08 Score=87.85 Aligned_cols=97 Identities=10% Similarity=-0.012 Sum_probs=85.8
Q ss_pred CCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCchhHHHHH
Q 044352 10 NLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNVFMLNWMV 85 (544)
Q Consensus 10 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 85 (544)
|.+...+..++..+...|++++|+..++++++. |.+.. ++..++.+|...|++++|+..++++. +.+...+..+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345678889999999999999999999999999 66777 99999999999999999999999876 56677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 044352 86 MASAFTGNFQEAIGYFSLMREF 107 (544)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~ 107 (544)
.++...|++++|+..|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=7.4e-08 Score=74.88 Aligned_cols=99 Identities=10% Similarity=-0.070 Sum_probs=89.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044352 419 ISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNI 496 (544)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 496 (544)
.+...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345678888999999999999999999874 445678889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 044352 497 CAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+...|++++|+..++++.+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.6e-07 Score=73.65 Aligned_cols=112 Identities=11% Similarity=-0.131 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHH
Q 044352 384 NEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAG 457 (544)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 457 (544)
+...+..+...+...|++++|...|++..+. .|+ ...+..++.+|...|++++|...++++. .+.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3444555555555666666666666655432 233 3455555556666666666666665542 233455666
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
.++.++...|++++|...|+++++++|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66667777777777777777777777777666666655543
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.3e-07 Score=75.35 Aligned_cols=100 Identities=14% Similarity=-0.071 Sum_probs=90.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
+.+...+..++..+...|++++|.+.|+++. ..|+ ...+..++.++...|++++|+..++++++.+|+++.++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3456778889999999999999999999864 4555 5788888999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 493 LSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++.++...|++++|+..++++++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998764
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=9.8e-08 Score=74.14 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=42.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCh---hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHh
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP--MYVTN---SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK---PDGFVMLSNICAA 499 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 499 (544)
+..+...|++++|...|+++. .+.+. ..+..++.++...|++++|+..++++++.+|++ +.++..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 334444444444444444432 11111 244444445555555555555555555555555 4445555555555
Q ss_pred cCChHHHHHHHHHHHhc
Q 044352 500 DGEWHEAENLRKIMKEK 516 (544)
Q Consensus 500 ~g~~~~A~~~~~~~~~~ 516 (544)
.|++++|+..|+++++.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=1.1e-07 Score=74.84 Aligned_cols=114 Identities=9% Similarity=-0.123 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHH
Q 044352 383 ANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFR 460 (544)
Q Consensus 383 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 460 (544)
.+...+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|...++++. .+.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45667777777888888888888888887764 34456778888888888888888888887764 445677888888
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCC-----CchhHHHHHHHHH
Q 044352 461 NGCNIHGRRDLAVTMGEEFFEMGLR-----KPDGFVMLSNICA 498 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 498 (544)
.++...|++++|+..|+++++++|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998887 5555555555443
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=2.1e-05 Score=71.13 Aligned_cols=169 Identities=9% Similarity=-0.015 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 044352 264 RENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTG-SIQIGREIHALVCRMGLHIDVFTGSALIDMYSKC-G-SLKDART 340 (544)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~ 340 (544)
..++|++++.+++..+ +-+..+++.--.++...+ +++++..+++.+....+ .+..+|+.-..++... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3345555555555432 122233333333333334 35555555555555442 2455555554445444 5 6677777
Q ss_pred HHHhcCC---ccHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-------hH
Q 044352 341 LFEITRI---KNVASWNAMIGCYGKHGMVD--------SSIELFERMLEEGMRANEVTLISVLSACSHGGL-------VE 402 (544)
Q Consensus 341 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 402 (544)
+++.+.. +|..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+. ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 7776664 34456655555555555555 7888888888763 4477777777777777665 67
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 044352 403 KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRM 437 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (544)
++++.++++... .+-|...|+.+-..+.+.|+.
T Consensus 226 eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 226 DELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 788888777763 355666666666666665543
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.3e-06 Score=79.07 Aligned_cols=175 Identities=6% Similarity=-0.049 Sum_probs=120.5
Q ss_pred HHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCC-ChHHHHHHhccCC---CCCchhHHHHHHHHHhc
Q 044352 17 DCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCG-DVNSARLVFDKIP---NPNVFMLNWMVMASAFT 91 (544)
Q Consensus 17 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 91 (544)
..+.....+.+..++|+..++.++.. |.+.. +++....++...| .+++++..++.+. +.+..+|+.-...+...
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~yt-aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYT-VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 33333344555667899999999999 55555 9999999998888 5999999999876 67778888887777776
Q ss_pred -C-CHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChH--------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 044352 92 -G-NFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIK--------KGKQVHAVATQMGFENDVSVGNALIDMYSKC 161 (544)
Q Consensus 92 -~-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 161 (544)
+ ++++++++++++.+...+ +..+|+.-.-.+...+.++ ++.+..+.+.+.. +.|..+|+....++.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 889999999999875432 5556655444444444444 7777888887775 56777777777776666
Q ss_pred CC-------HHHHHHHHhhccC---CChhhHHHHHHHHhccCC
Q 044352 162 GL-------LCSARRVFHGMFE---RDVVSWTSMISGYCNVSK 194 (544)
Q Consensus 162 ~~-------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 194 (544)
++ ++++++.+++... .|...|+-+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 65 4556666655533 345556554444444443
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=1.2e-07 Score=91.40 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
...|..++.+|.+.|++++|+..++++. .+.+..++..++.+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999998874 45567889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHhc
Q 044352 499 ADGEWHEAEN-LRKIMKEK 516 (544)
Q Consensus 499 ~~g~~~~A~~-~~~~~~~~ 516 (544)
+.|++++|.. .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998875 56666544
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=4.2e-07 Score=74.04 Aligned_cols=129 Identities=12% Similarity=-0.053 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM 430 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (544)
..+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777888888888888888887752 446777788888888888888888888888774 34566778888888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCChhHHHH--HHHHHhhcCChHHHHHHHHHHHHc
Q 044352 431 LCRSGRMVEAYDLLRQVP--MYVTNSMAGA--FRNGCNIHGRRDLAVTMGEEFFEM 482 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 482 (544)
+...|++++|...++++. .+.+...+.. .+..+...|++++|+..+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888763 3334445533 333467788899999888877653
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=6.1e-06 Score=74.33 Aligned_cols=179 Identities=12% Similarity=-0.012 Sum_probs=103.0
Q ss_pred HHHHHHHHhcC---CccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hHHHHHHHH
Q 044352 336 KDARTLFEITR---IKNVASWNAMIGCYGKHG--MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGL-VEKGLEIFR 409 (544)
Q Consensus 336 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 409 (544)
++++.+++.+. ..+..+|+.-..++...| .+++++.+++++.+.. +-|..+|+.-..++...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44444444433 234455555555555555 3566666666666652 3355566555555555565 466666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhc--------------CCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc-------
Q 044352 410 SMKERYGVKISKEHYACVVDMLCRS--------------GRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH------- 466 (544)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 466 (544)
++.+. .+-+...|+.....+.+. +.++++++.+.++. .+.|..+|+.+-..+...
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66653 244455555555444443 34566666666653 445566665444444433
Q ss_pred ----CChHHHHHHHHHHHHcCCCCchhHHHHHHHH---HhcCChHHHHHHHHHHHhcC
Q 044352 467 ----GRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC---AADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 467 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 517 (544)
+.++++++.++++++++|++.-.+..++... ...|..++....+.++.+.+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3477888888888888887755444443322 24577778888888877643
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.66 E-value=9.8e-08 Score=77.63 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.+..++.+|...|++++|+..++++++++|.++.++..+|.+|...|++++|+..|+++++.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34444444555555555555555555555555555555555555555555555555554443
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=6.6e-08 Score=89.14 Aligned_cols=140 Identities=15% Similarity=0.043 Sum_probs=100.5
Q ss_pred ccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCC---------------chhHHHHH
Q 044352 25 KSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPN---------------VFMLNWMV 85 (544)
Q Consensus 25 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~l~ 85 (544)
..++++.|+..++..++. +.+.. ++..++..+.+.|++++|+..|++.. +.+ ..+|..+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~-~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQST-IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 556778888888887776 44556 88888888888999999999888765 333 36677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHH
Q 044352 86 MASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLC 165 (544)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (544)
.++.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+.+.+.. |.+..++..+..++...|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777643 2245566677777777777777777777777664 445566666666666666666
Q ss_pred HH
Q 044352 166 SA 167 (544)
Q Consensus 166 ~A 167 (544)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.64 E-value=8.7e-08 Score=88.35 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 350 VASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
...+..+...+...|++++|+..|++.+.. .|+... +...++.+++...+ ....|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 346777788888899999999999998874 454331 23344444443222 1237788899
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH-HhcCChHHH
Q 044352 430 MLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC-AADGEWHEA 506 (544)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 506 (544)
+|.+.|++++|+..++++. .+.+..++..++.+|...|++++|+..|+++++++|.++.++..++.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 4456788999999999999999999999999999999999999998884 456778888
Q ss_pred HHHHHHHHhcCCC
Q 044352 507 ENLRKIMKEKNVQ 519 (544)
Q Consensus 507 ~~~~~~~~~~~~~ 519 (544)
...|+++.+....
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8899988866543
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=1e-07 Score=74.03 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----hhHH
Q 044352 386 VTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-----MYVT----NSMA 456 (544)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~ 456 (544)
..+..+...+...|++++|...+++..+. .+.+...+..++.+|...|++++|...++++. ..++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45566666677777777777777777663 24455666667777777777777777776652 1112 4456
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
..++.++...|++++|...++++++..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6666667777777777777777777666 4555555555443
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=7e-08 Score=93.45 Aligned_cols=118 Identities=8% Similarity=-0.110 Sum_probs=96.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCCh
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRR 469 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 469 (544)
...+...|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+..++..++.+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888774 34457788888888889999999998888763 345677889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 044352 470 DLAVTMGEEFFEMGLRKPDGFVMLSNI--CAADGEWHEAENLRK 511 (544)
Q Consensus 470 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 511 (544)
++|++.++++++++|+++.++..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 889999999999988
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=3.1e-08 Score=75.49 Aligned_cols=63 Identities=8% Similarity=-0.080 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 454 SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.++..++.++...|++++|+..++++++++|+++.++..++.++...|++++|+..++++++.
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555556666666666666666666666666666666666666666666666655543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=1.8e-07 Score=71.59 Aligned_cols=98 Identities=6% Similarity=-0.096 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhh
Q 044352 388 LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNI 465 (544)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 465 (544)
+..+...+.+.|++++|...++++.+. .+.+...+..++.++...|++++|+..|+++. .+.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445566677888888888888888774 34567778888888888888888888888764 44567788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCc
Q 044352 466 HGRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~p~~~ 487 (544)
.|++++|+..++++++++|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999998764
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=8e-07 Score=68.85 Aligned_cols=107 Identities=9% Similarity=-0.051 Sum_probs=77.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC---hhHHHHHHH
Q 044352 390 SVLSACSHGGLVEKGLEIFRSMKERYGVKISK---EHYACVVDMLCRSGRMVEAYDLLRQVP--MYVT---NSMAGAFRN 461 (544)
Q Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~ 461 (544)
.+...+...|++++|...|+++.+. .+.+. ..+..++.++...|++++|...|+++. .+.+ +.++..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3455666777788888777777664 12223 466677777888888888888877753 2223 566788888
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 462 GCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
++...|++++|+..|+++++..|+++.+......+-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999988777666554443
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.60 E-value=1.6e-07 Score=76.41 Aligned_cols=81 Identities=10% Similarity=-0.114 Sum_probs=67.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc-hhHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP-DGFVMLSNI 496 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 496 (544)
+...|..++.+|.+.|++++|+..++++. .+.+..++..++.++...|++++|+..|+++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45678888999999999999999998874 455678899999999999999999999999999999988 556566555
Q ss_pred HHhc
Q 044352 497 CAAD 500 (544)
Q Consensus 497 ~~~~ 500 (544)
..+.
T Consensus 142 ~~~~ 145 (162)
T 3rkv_A 142 TERR 145 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=2.9e-07 Score=71.41 Aligned_cols=97 Identities=7% Similarity=0.009 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-------chhHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK-------PDGFV 491 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 491 (544)
...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456666777777777777777777653 34456666777777777777777777777777776655 66677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 492 MLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++.++...|++++|.+.++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77777777777777777777776643
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1.4e-07 Score=79.74 Aligned_cols=144 Identities=10% Similarity=-0.065 Sum_probs=80.1
Q ss_pred HHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCCc----------------hh
Q 044352 21 GKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPNV----------------FM 80 (544)
Q Consensus 21 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~----------------~~ 80 (544)
......|+++.+.+.++..... +.... .+..++..+...|++++|+..|++.. +.++ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAF-DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3344567777777777765555 44444 67777777777888888887777654 2233 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 044352 81 LNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSK 160 (544)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (544)
|..+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|...++...+.. +.+..++..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 5666666666666666666666666532 1244455556666666666666666666666553 3344455555555544
Q ss_pred CCCHHHH
Q 044352 161 CGLLCSA 167 (544)
Q Consensus 161 ~~~~~~A 167 (544)
.++..++
T Consensus 169 ~~~~~~~ 175 (198)
T 2fbn_A 169 LKEARKK 175 (198)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 4444333
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=2.3e-07 Score=69.75 Aligned_cols=98 Identities=6% Similarity=-0.229 Sum_probs=71.5
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CC--CchhHH
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NP--NVFMLN 82 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~--~~~~~~ 82 (544)
+|.+...+..++..+...|++++|...++++++. +.+.. ++..++.++...|++++|+..|++.. +. +...|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK-YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 3456667777777788888888888888888877 55566 77777777777777777777777654 34 566677
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhc
Q 044352 83 WMVMASAFT-GNFQEAIGYFSLMREF 107 (544)
Q Consensus 83 ~l~~~~~~~-~~~~~A~~~~~~~~~~ 107 (544)
.+..++... |++++|++.+++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777777 7777777777777664
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=3.6e-07 Score=70.60 Aligned_cols=92 Identities=12% Similarity=-0.018 Sum_probs=60.4
Q ss_pred chHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCC-------chhHH
Q 044352 14 NYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPN-------VFMLN 82 (544)
Q Consensus 14 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-------~~~~~ 82 (544)
.++..+...+.+.|++++|+..|+++++. |.+.. ++..++.+|...|++++|+..|++.. +.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~-~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT-FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45666777777777777777777777777 55555 77777777777777777777776654 111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 044352 83 WMVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
.+..++...|++++|++.|++.+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555566666666777666666655
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=5.2e-07 Score=76.38 Aligned_cols=83 Identities=12% Similarity=-0.004 Sum_probs=37.5
Q ss_pred cCCChHHHHH---HhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcc----c-ccCHHHHHHHHHHhhCCCChH
Q 044352 59 GCGDVNSARL---VFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFI----Y-RCNKFTFSIVLKACVGLLDIK 130 (544)
Q Consensus 59 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~p~~~~~~~ll~~~~~~~~~~ 130 (544)
..|++++|.+ .+...+.....++..+...+...|++++|+..+++..+.. . .....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 4433223334455555555555555555555555554310 0 111223444444445555555
Q ss_pred HHHHHHHHHHH
Q 044352 131 KGKQVHAVATQ 141 (544)
Q Consensus 131 ~a~~~~~~~~~ 141 (544)
+|...+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.55 E-value=8.4e-08 Score=73.04 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=68.2
Q ss_pred CCchHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHH
Q 044352 398 GGLVEKGLEIFRSMKERYG--VKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAV 473 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (544)
.|++++|+..|+++.+. + .+.+...+..++.+|...|++++|...|+++. .+.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 1 13345667777778888888888888887763 3445778888888999999999999
Q ss_pred HHHHHHHHcCCCCchhHHH
Q 044352 474 TMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~~ 492 (544)
..++++++..|+++.....
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999999999988776543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.54 E-value=4.2e-07 Score=84.68 Aligned_cols=138 Identities=8% Similarity=-0.094 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDM 430 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (544)
..+..+...+.+.|++++|+..|++.++. .+... .....+ ...+ ..+.+...|..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHH--HHHHHHHHHHHHHHH
Confidence 35666677777777777777777776652 11100 000011 1000 112345678889999
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHH
Q 044352 431 LCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAEN 508 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 508 (544)
|.+.|++++|++.++++. .+.+..++..++.+|...|++++|+..|+++++++|+++.++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 344677889999999999999999999999999999999999999999999999888876
Q ss_pred H
Q 044352 509 L 509 (544)
Q Consensus 509 ~ 509 (544)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=3.8e-07 Score=73.88 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC------CCch
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL------RKPD 488 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 488 (544)
.+..++..+...|++++|.+.++++. ..++ ...+..++..+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555566665555555432 0111 33556677778888888888888888887532 1235
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 489 GFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
++..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778889999999999999999888753
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.50 E-value=6e-07 Score=65.92 Aligned_cols=67 Identities=13% Similarity=-0.031 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+.++..+..++.++...|++++|+..|+++++++|+++.++..++.+|...|++++|+..|++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456788888889999999999999999999999999999999999999999999999999988764
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=8.5e-06 Score=80.31 Aligned_cols=168 Identities=8% Similarity=-0.081 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCC---ccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC--
Q 044352 335 LKDARTLFEITRI---KNVASWNAMIGCYGKHGM----------VDSSIELFERMLEEGMRANEVTLISVLSACSHGG-- 399 (544)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 399 (544)
.++|.+.++.+.. .+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777776653 344566666666666666 899999999999863 557888888888888888
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhCC--CCCChhHHHHHHHHHhhc----------
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG-RMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH---------- 466 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---------- 466 (544)
+++++++.++++.+. .+-+...|+.-..++.+.| .++++.+.++++. .+.+..+|.....++...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999985 4557778888888888888 8999999999885 455678888877776653
Q ss_pred ----CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHH
Q 044352 467 ----GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHE 505 (544)
Q Consensus 467 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 505 (544)
+.++++++.++++++.+|++..+|..+.+++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.9e-08 Score=73.52 Aligned_cols=93 Identities=13% Similarity=-0.111 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC------chhHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRK------PDGFV 491 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 491 (544)
+...+..++..+...|++++|.+.|+++. .+.+...+..++.++...|++++|+..++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567777888888888888888888763 44567788888889999999999999999999999988 77888
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 044352 492 MLSNICAADGEWHEAENLRKI 512 (544)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~ 512 (544)
.++.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888888776544
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=8.3e-06 Score=73.43 Aligned_cols=194 Identities=10% Similarity=-0.046 Sum_probs=143.9
Q ss_pred hcCCHH-HHHHHHHhcCCc---cHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044352 331 KCGSLK-DARTLFEITRIK---NVASWNAMIGCYGKHGM----------VDSSIELFERMLEEGMRANEVTLISVLSACS 396 (544)
Q Consensus 331 ~~~~~~-~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (544)
+.|.+. +|+.+++.+... +..+|+.--..+...+. +++++.+++.++... +-+..+|..-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344433 566666665542 23344443333333222 678999999998863 557888888777777
Q ss_pred cCC--chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhCC--CCCChhHHHHHHHHHhhc-----
Q 044352 397 HGG--LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR-MVEAYDLLRQVP--MYVTNSMAGAFRNGCNIH----- 466 (544)
Q Consensus 397 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 466 (544)
..+ .+++++.+++++.+. .+-+...|+.-..++...|. ++++++.++++. .+.+..+|......+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 777 489999999999985 45677788888888888888 589999998874 566788888877776655
Q ss_pred ---------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCCCceE
Q 044352 467 ---------GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD-----------GEWHEAENLRKIMKEKNVQKQPGFSR 526 (544)
Q Consensus 467 ---------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 526 (544)
+.++++++.+++++..+|+|..+|..+.+++.+. +.++++++.++++++.. |..-|
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~----pd~~w 273 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE----PENKW 273 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC----TTCHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC----cccch
Confidence 4589999999999999999999999998888877 56889999999998765 33466
Q ss_pred EEecC
Q 044352 527 VEKRN 531 (544)
Q Consensus 527 ~~~~~ 531 (544)
..+..
T Consensus 274 ~l~~~ 278 (331)
T 3dss_A 274 CLLTI 278 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 64443
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=7.7e-07 Score=86.14 Aligned_cols=114 Identities=12% Similarity=-0.041 Sum_probs=47.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEA 440 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 440 (544)
...|++++|++.+++.++.. +.+..++..+..++.+.|++++|+..++++.+ ..+.+...+..++.+|...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444444554444444431 22344444444444455555555555544443 2223344444444455555555555
Q ss_pred HHHHHhCC--CCCChhHHHHHHHH--HhhcCChHHHHHHHH
Q 044352 441 YDLLRQVP--MYVTNSMAGAFRNG--CNIHGRRDLAVTMGE 477 (544)
Q Consensus 441 ~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 477 (544)
.+.|+++. .+.+...+..+..+ +...|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55444432 11222233333333 444455555555555
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.4e-06 Score=83.74 Aligned_cols=164 Identities=9% Similarity=-0.108 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHh---CC-CCchh
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEG-MRANE----VTLISVLSACSHGGLVEKGLEIFRSMKERY---GV-KISKE 422 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~ 422 (544)
++..++..|...|++++|.+.+.++...- ..++. .+...+...+...|+++.|..++....... +. .....
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777888888888888877765521 11111 122333334456778888888887765431 11 22245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC---CCC----c
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP-------MYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG---LRK----P 487 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~ 487 (544)
++..++..|...|++++|..+++++. ..+ ....+..++..|...|++++|..++++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 67788888889999999988887652 112 23467778888899999999999999888754 222 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466677888888999999988877764
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.45 E-value=1e-06 Score=84.62 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=97.6
Q ss_pred HHhcCCchHHHHHHHHHHHHHhCC--C---C-chhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHHH
Q 044352 394 ACSHGGLVEKGLEIFRSMKERYGV--K---I-SKEHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVT-NSMAG 457 (544)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~~~~--~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~ 457 (544)
.+...|++++|+.++++..+...- . | ...+++.++.+|...|++++|..+++++. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888777654211 1 1 24567888888888888888888887652 3333 34678
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHH-----cCCCCchhH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFE-----MGLRKPDGF---VMLSNICAADGEWHEAENLRKIMKEKNVQKQPG 523 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 523 (544)
.++..|...|++++|+.+++++++ ++|++|.+. ..+..++..+|.+++|...|+++.+......|-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999987 568887764 567888889999999999999998765444443
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.42 E-value=1.9e-07 Score=73.19 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhcC
Q 044352 469 RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADG-----------EWHEAENLRKIMKEKN 517 (544)
Q Consensus 469 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~ 517 (544)
+++|+..|+++++++|+++.+|..++.+|...| ++++|+++|+++++.+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 568999999999999988889999999888774 8889999998888754
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=2.6e-06 Score=83.96 Aligned_cols=164 Identities=10% Similarity=-0.055 Sum_probs=136.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044352 363 HGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGL----------VEKGLEIFRSMKERYGVKISKEHYACVVDMLC 432 (544)
Q Consensus 363 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (544)
....++|++.+++++... +-+..+|+.-..++...|+ +++++.+++.+.+. .+-+..+|..-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344567899999999962 3355667666666666666 89999999999884 4667888988888999
Q ss_pred hcC--CHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-------
Q 044352 433 RSG--RMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHG-RRDLAVTMGEEFFEMGLRKPDGFVMLSNICAAD------- 500 (544)
Q Consensus 433 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 500 (544)
+.| ++++++++++++. .+.+..+|..-..++...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999985 6678889998888888888 899999999999999999999999999998884
Q ss_pred -------CChHHHHHHHHHHHhcCCCCCCCceEEEecC
Q 044352 501 -------GEWHEAENLRKIMKEKNVQKQPGFSRVEKRN 531 (544)
Q Consensus 501 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (544)
+.+++|+++++++++.. |.....|..+++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ 234 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRW 234 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHH
Confidence 56799999999998754 667778887777
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=1.3e-06 Score=80.57 Aligned_cols=153 Identities=8% Similarity=-0.041 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 044352 319 VFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHG 398 (544)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (544)
...+..+...+.+.|++++|...|++....++... .+...|+..++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677788888999999999999988664222111 1222333344332221 23678888899999
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHH-HhhcCChHHHHHH
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYV-TNSMAGAFRNG-CNIHGRRDLAVTM 475 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~A~~~ 475 (544)
|++++|+..++++.+. .+.+...+..++.+|...|++++|...|+++. ..| +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 35567889999999999999999999999985 333 44556555555 3456778899999
Q ss_pred HHHHHHcCCCCch
Q 044352 476 GEEFFEMGLRKPD 488 (544)
Q Consensus 476 ~~~~~~~~p~~~~ 488 (544)
|++++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999987653
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.40 E-value=1.5e-06 Score=62.42 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICA 498 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 498 (544)
...+..++..+...|++++|...++++. .+.+...+..++.++...|++++|+..++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556666777777777777777776653 33456677777778888888888888888888888888888888888776
Q ss_pred hcC
Q 044352 499 ADG 501 (544)
Q Consensus 499 ~~g 501 (544)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=1.1e-06 Score=69.08 Aligned_cols=73 Identities=12% Similarity=-0.073 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCC-hhHH----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP-M-------YVT-NSMA----GAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
.|..+..++.+.|++++|+..++++. . .|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67777777778888877777776653 2 554 5578 889999999999999999999999999988776
Q ss_pred HHHHHH
Q 044352 490 FVMLSN 495 (544)
Q Consensus 490 ~~~l~~ 495 (544)
...+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=9.2e-07 Score=66.93 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+...+..++..+...|++++|+..++++++++|.++.++..++.++...|++++|+..|+++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666666666666666666666666665554
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.36 E-value=2.9e-06 Score=60.66 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 450 YVTNSMAGAFRNGCNIHGR---RDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
+.++..+..++.++...++ .++|..+++++++++|+++.++..+|..+.+.|++++|+.+|+++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567788888887764444 799999999999999999999999999999999999999999999987644
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=2.1e-06 Score=69.33 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hh
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGM-RAN----EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KE 422 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 422 (544)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666666554210 011 124555666666677777777777665543111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044352 423 HYACVVDMLCRSGRMVEAYDLLRQVP----MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 484 (544)
.+..++..+...|++++|.+.+++.. ...+ ...+..++..+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 55666777777777777777776642 1111 33566777788889999999999998887643
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=1.1e-06 Score=84.57 Aligned_cols=141 Identities=10% Similarity=-0.005 Sum_probs=86.5
Q ss_pred ccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---CCC---------------chhHHHHH
Q 044352 25 KSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---NPN---------------VFMLNWMV 85 (544)
Q Consensus 25 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~l~ 85 (544)
..++++.|+..++...+. +.... .+..++..+.+.|++++|+..|++.. +.+ ..+|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~-~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAA-IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 445667777777776666 44455 77888888888888888888888765 333 35566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHH
Q 044352 86 MASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLC 165 (544)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (544)
.++.+.|++++|+..+++.++... .+...|..+..++...|++++|...|+++++.. +.+..++..+..++...++.+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665321 244455555666666666666666666666553 334445555555555555555
Q ss_pred HHH
Q 044352 166 SAR 168 (544)
Q Consensus 166 ~A~ 168 (544)
++.
T Consensus 403 ~a~ 405 (457)
T 1kt0_A 403 ERD 405 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.2e-06 Score=78.71 Aligned_cols=159 Identities=6% Similarity=-0.032 Sum_probs=118.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCch
Q 044352 358 GCYGKHGMVDSSIELFERMLEEGMRAN----------------EVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISK 421 (544)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 421 (544)
..+...|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888877421111 1247788899999999999999999887653333332
Q ss_pred h----HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC------
Q 044352 422 E----HYACVVDMLCRSGRMVEAYDLLRQVP-------MYV-TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG------ 483 (544)
Q Consensus 422 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 483 (544)
. +.+.+...+...|++++|.++++... ..+ ...++..++..+...|++++|..+++++...-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 33344555567889999999987652 222 24577888999999999999999999998742
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 484 LRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 484 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
|....++..++.+|...|++++|..++++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 223457888999999999999999999998753
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.29 E-value=8e-06 Score=63.88 Aligned_cols=110 Identities=8% Similarity=-0.046 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhh----cCChHHHHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTM 475 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 475 (544)
++++|..+|++..+. + .+. .. +...|...+..++|.+.|++.....++.+...+...|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455555555555543 3 122 11 555555555555566666555434455666666666665 6677777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 044352 476 GEEFFEMGLRKPDGFVMLSNICAA----DGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 476 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (544)
|+++.+. .++.++..|+.+|.. .+++++|+.+|++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777765 356777777777777 677777777777776655
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.25 E-value=2.9e-06 Score=79.03 Aligned_cols=66 Identities=14% Similarity=-0.094 Sum_probs=61.9
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+..++..++.+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++++..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998764
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.3e-06 Score=61.62 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (544)
+...+..++..+...|++++|+..|+++++++|.++.++..++.++.+.|++++|+..++++++...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999999999999999999999999999999999999999987653
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.17 E-value=2.3e-06 Score=67.16 Aligned_cols=92 Identities=10% Similarity=-0.044 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH----------HHHHHHHHhCC--CCCChhHHHHHHHHHhh
Q 044352 398 GGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRM----------VEAYDLLRQVP--MYVTNSMAGAFRNGCNI 465 (544)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 465 (544)
.+.+++|.+.++...+. -+.+...|..++.++...+++ ++|+..|+++. .+....+|..++.+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34556666666666553 244555666666666655543 46777776653 34455677777777766
Q ss_pred c-----------CChHHHHHHHHHHHHcCCCCchhHH
Q 044352 466 H-----------GRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 466 ~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
. |++++|+..|+++++++|++.....
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5 5899999999999999998764433
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.3e-05 Score=57.31 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+...+..++..+...|++++|+..++++++.+|.++.++..++.++.+.|++++|+..++++.+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345778888899999999999999999999999999999999999999999999999999998764
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=9e-06 Score=61.33 Aligned_cols=81 Identities=11% Similarity=-0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044352 403 KGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFF 480 (544)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (544)
.|+..|++..+ ..+.+...+..++.+|...|++++|...|+++. .+.+...+..++.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666654 234456677777777777777777777777653 34456677888888888889999999999888
Q ss_pred HcCCC
Q 044352 481 EMGLR 485 (544)
Q Consensus 481 ~~~p~ 485 (544)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88764
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.00 E-value=7e-06 Score=59.92 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChh-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCh
Q 044352 427 VVDMLCRSGRMVEAYDLLRQVP--MYVTNS-MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEW 503 (544)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 503 (544)
.+..+.+.|++++|.+.++++. .+.+.. .+..++.++...|++++|+..|+++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556777788888888887763 344556 77888888888889999999999999888888877633 455
Q ss_pred HHHHHHHHHHHh
Q 044352 504 HEAENLRKIMKE 515 (544)
Q Consensus 504 ~~A~~~~~~~~~ 515 (544)
.++...|++..+
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.0001 Score=57.46 Aligned_cols=112 Identities=10% Similarity=-0.049 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHH
Q 044352 364 GMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCR----SGRMVE 439 (544)
Q Consensus 364 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 439 (544)
+++++|+..|++..+.| .|... +...|...+.+++|.++|++..+. .+...+..+...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999987 33333 677777888889999999999874 467788889999988 899999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHHcCC
Q 044352 440 AYDLLRQVPMYVTNSMAGAFRNGCNI----HGRRDLAVTMGEEFFEMGL 484 (544)
Q Consensus 440 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 484 (544)
|.++|++.....++.+...+...|.. .+++++|+.+|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998656788889999999988 8999999999999999864
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=2.5e-05 Score=75.01 Aligned_cols=83 Identities=8% Similarity=-0.011 Sum_probs=44.4
Q ss_pred hhccchhhhhhHHhHHHhhc--------ccchhhHHHHHHHHhhcCCChHHHHHHhccCC--------CC---CchhHHH
Q 044352 23 CMKSKALRQGKQVHALLCTN--------DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--------NP---NVFMLNW 83 (544)
Q Consensus 23 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~---~~~~~~~ 83 (544)
+..+|++++|..+++++++. .|+...+++.++.+|...|++++|+.++++.. +. ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666666554 22233355566666666666666666555432 11 1224555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 044352 84 MVMASAFTGNFQEAIGYFSLMR 105 (544)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~ 105 (544)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555566655555555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.87 E-value=4.7e-05 Score=55.39 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=56.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD-GFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
..+..+...|++++|+..++++++.+|.++. ++..++.++...|++++|+..|+++++.+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3556788999999999999999999999999 9999999999999999999999999987543
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=2.7e-05 Score=56.91 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=48.3
Q ss_pred CCCCcchHHHHHHHhhccchhhhhhHHhHHHhhc-ccchhhHHHHHHHHhhcCCChHHHHHHhccC
Q 044352 9 NNLSVNYLDCLLGKCMKSKALRQGKQVHALLCTN-DLNIFSLKSKLVGVYAGCGDVNSARLVFDKI 73 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (544)
+|.++.++..++.++...|++++|+..++++++. |.+.. ++..++.+|...|++++|+..|++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888888888888888888888888887 55566 7788888888888888888777764
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=4.8e-05 Score=71.81 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHhCC---------CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCch---hHHHHHH
Q 044352 434 SGRMVEAYDLLRQVP---------MYVT-NSMAGAFRNGCNIHGRRDLAVTMGEEFFE-----MGLRKPD---GFVMLSN 495 (544)
Q Consensus 434 ~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~ 495 (544)
.|++++|..++++.. ..|+ ..+++.++.+|...|++++|+.+++++++ ++|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666665431 2222 24677888888899999999999999887 4566665 4778899
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044352 496 ICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~ 515 (544)
+|..+|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988875
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.67 E-value=0.00017 Score=68.20 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCC------CCCC----hhHHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCch---h
Q 044352 428 VDMLCRSGRMVEAYDLLRQVP------MYVT----NSMAGAFRNGCNIHGRRDLAVTMGEEFFE-----MGLRKPD---G 489 (544)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 489 (544)
+..+.+.|++++|..++++.. ..++ ..+++.++.+|...|++++|+.+++++++ ++|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888887776541 1222 24677888888999999999999998887 4466665 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044352 490 FVMLSNICAADGEWHEAENLRKIMKE 515 (544)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (544)
+..|+.+|..+|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788999999999999999988864
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00022 Score=67.35 Aligned_cols=96 Identities=10% Similarity=-0.084 Sum_probs=69.3
Q ss_pred cCCchHHHHHHHHHHHHHhC--CCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHHHHHH
Q 044352 397 HGGLVEKGLEIFRSMKERYG--VKI----SKEHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVT-NSMAGAFR 460 (544)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 460 (544)
..|++++|+.++++..+... +.| ...+++.++.+|...|++++|..+++++. ..|+ ..+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45677888887777665321 112 23567778888888888888888877652 3333 34678899
Q ss_pred HHHhhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 044352 461 NGCNIHGRRDLAVTMGEEFFE-----MGLRKPDGFVM 492 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 492 (544)
..|...|++++|+.+++++++ ++|++|.+-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999987 56888776553
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0011 Score=59.92 Aligned_cols=132 Identities=8% Similarity=-0.009 Sum_probs=76.2
Q ss_pred CCCCcchHHHHHHHhhc-----cchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcC---C-----C---hHHHHHHhcc
Q 044352 9 NNLSVNYLDCLLGKCMK-----SKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGC---G-----D---VNSARLVFDK 72 (544)
Q Consensus 9 ~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-----~---~~~A~~~~~~ 72 (544)
.|.+..+|...+++... ..++.+|+.+|+++++..|+...++..+..+|... + . ...|......
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 44566777777766442 23567899999999999444332777666655411 1 0 0111111111
Q ss_pred CC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 044352 73 IP--NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 73 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 142 (544)
+. +.++.+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|...+++....
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 4555566666555555666666666666666643 55555555556666666666666666666665
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.0031 Score=56.99 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=37.2
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++.++..+...+...|++++|+..++++++++| +...|..+++++.-.|++++|.+.|+++...+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3444555444444455666666666666666664 34455555666666666666666666655543
No 217
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.56 E-value=0.077 Score=52.33 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044352 364 GMVDSSIELFERMLEEGMRANEVT----LISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE 439 (544)
Q Consensus 364 g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (544)
.+.+.|...+....... ..+... ...+.......+...++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47888999998886543 223332 222333334445356666677665432 3444445555555667899999
Q ss_pred HHHHHHhCCCCC--ChhHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 044352 440 AYDLLRQVPMYV--TNSMAGAFRNGCNIHGRRDLAVTMGEEFFE 481 (544)
Q Consensus 440 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (544)
|...|+.++..+ .......++.++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999987432 244456677788888999999999999875
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=4.4e-06 Score=76.72 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=91.4
Q ss_pred cchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHh
Q 044352 44 LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKAC 123 (544)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 123 (544)
..+. +|..++.+....|++.+|++.|-+ ..|+..|..++.+..+.|.+++-+..+....+..- ++..=+.++-+|
T Consensus 52 n~p~-VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPA-VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCC-CSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CCcc-HHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 3445 889999999999999999886644 45667788999999999999999999988876533 334445788889
Q ss_pred hCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 124 VGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
++.++..+..+.+ -.|+..-...+..-|...|.++.|.-+|..+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9998877655443 2466666677888888889998888888776
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.49 E-value=0.00048 Score=65.13 Aligned_cols=100 Identities=11% Similarity=-0.070 Sum_probs=68.9
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhC--CCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHH
Q 044352 393 SACSHGGLVEKGLEIFRSMKERYG--VKI----SKEHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVT-NSMA 456 (544)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~ 456 (544)
..+...|++++|+.++++..+... +.| ...+++.++.+|...|++++|..+++++. ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777777777654311 112 13456777777777888888877777642 2333 3467
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 044352 457 GAFRNGCNIHGRRDLAVTMGEEFFE-----MGLRKPDGFVM 492 (544)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 492 (544)
+.++..|...|++++|+.+++++++ ++|++|.+...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8888899999999999999999987 56888876654
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.45 E-value=0.01 Score=43.98 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=93.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 044352 361 GKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEA 440 (544)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 440 (544)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.|.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3456777777777766653 344555555555555555555555555553322111 23333333
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 044352 441 YDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQ 519 (544)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (544)
...+-.+. .+.......+..+...|+.++-.+++...+.-+|.+|..+..++.+|.+.|+..+|.++++++-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33333332 244445555667888999999999999987777889999999999999999999999999999999874
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.43 E-value=0.00055 Score=59.16 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=65.8
Q ss_pred HHHHHHHHhCC-CCCC---hhHHHHHHHHHhh-----cCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHhc-CChHHH
Q 044352 438 VEAYDLLRQVP-MYVT---NSMAGAFRNGCNI-----HGRRDLAVTMGEEFFEMGLRK-PDGFVMLSNICAAD-GEWHEA 506 (544)
Q Consensus 438 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 506 (544)
.+|...++++. ..|+ ...|..++..|.. -|+.++|.++|+++++++|+. ..++..++..+++. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34555555542 3333 4567777777777 489999999999999999964 99999999998884 999999
Q ss_pred HHHHHHHHhcCCCCCCCc
Q 044352 507 ENLRKIMKEKNVQKQPGF 524 (544)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~ 524 (544)
.+++++.+......+|++
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 999999988777655553
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.41 E-value=0.00034 Score=54.18 Aligned_cols=92 Identities=14% Similarity=-0.019 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--ChhHHHHHHHHHhhcCChHH
Q 044352 399 GLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG---RMVEAYDLLRQVP-MY-V--TNSMAGAFRNGCNIHGRRDL 471 (544)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 471 (544)
+....+.+.|.+..+. -+++..+...+..++++.+ +.++++.+++.+. .. | ....+..++-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3556677777776653 3478889999999999988 6669999998864 22 4 35678888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHH
Q 044352 472 AVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 472 A~~~~~~~~~~~p~~~~~~~~ 492 (544)
|+++++.+++.+|+|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999987766554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.0007 Score=52.45 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 450 YVTNSMAGAFRNGCNIHG---RRDLAVTMGEEFFEMG-L-RKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
+++..+...++.++.+.+ +.++++.++++.++.+ | .+.+.+..|+.++.+.|++++|+++++.+++.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355666666666666665 4556666666666666 5 34566666666666666666666666666654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.40 E-value=0.0009 Score=48.97 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 044352 422 EHYACVVDMLCRSGRMVEAYDLLRQVP---------MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVM 492 (544)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 492 (544)
..+..++..+.+.|++..|...|+.+. ..+....+..++.++.+.|++++|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555555555555555554431 12345677888889999999999999999999999998887666
Q ss_pred HH
Q 044352 493 LS 494 (544)
Q Consensus 493 l~ 494 (544)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.36 E-value=0.00087 Score=49.03 Aligned_cols=66 Identities=15% Similarity=-0.011 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 452 TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG-------LRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+......++..+...|+++.|+.+|+++++.. +..+.++..|+.++.+.|++++|+.+++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566788899999999999999999999853 3456789999999999999999999999998754
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.35 E-value=0.0016 Score=46.20 Aligned_cols=70 Identities=14% Similarity=-0.012 Sum_probs=55.0
Q ss_pred CCchhHHHHHHHHHHhcCC---HHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCc
Q 044352 418 KISKEHYACVVDMLCRSGR---MVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKP 487 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 487 (544)
+.++..+..++.++...++ .++|..+++++. .+.++.+...++..+...|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566777777777764444 688888888764 556677888888899999999999999999999998733
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.99 E-value=2.9e-05 Score=71.42 Aligned_cols=244 Identities=9% Similarity=0.016 Sum_probs=135.9
Q ss_pred CCcchHHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCC--CCCchhHHHHHHHH
Q 044352 11 LSVNYLDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP--NPNVFMLNWMVMAS 88 (544)
Q Consensus 11 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~ 88 (544)
..+.+|..|+.+..+.+.+.+|+..| ++. .|+. .+..++.+..+.|.+++-+..++-.. ..++..=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy---IkA-~Dps-~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY---IKA-DDPS-SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS---CCC-SCCC-SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH---HhC-CChH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 35566777777777777666665544 222 2222 34666777777777777777666555 34455556677777
Q ss_pred HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--------------------CCCCCh
Q 044352 89 AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM--------------------GFENDV 148 (544)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~ 148 (544)
++.++..+-.++ + -.|+..-...+..-|...|.++.|.-+|..+... .-..++
T Consensus 127 Ak~~rL~elEef----l---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEF----I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTST----T---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHH----H---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 776664332221 1 1234434444444454555555444444322111 013456
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhc-cCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 044352 149 SVGNALIDMYSKCGLLCSARRVFHGM-FERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARR 227 (544)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (544)
.+|..+-.+|...+.+.-|...--.+ ..+|. ...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 67777777777777776655433222 12211 1234455777888888888888765321 34566788777777764
Q ss_pred CChHHHHHHHHHhhh-CCCCC------CHhHHHHHHHHHHcCCCHHHHHH
Q 044352 228 GDSNAAFAFFSRMTA-EGFVP------DLVTWNAMISGFAQSKRENEALK 270 (544)
Q Consensus 228 ~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 270 (544)
++++..+.++..-. .+++. ....|.-++..|.+-.++|.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44444444443222 23222 23457777777777777776653
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.042 Score=57.20 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHhCCCHHHHHH-HHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 044352 158 YSKCGLLCSARR-VFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGDSNAAFAF 236 (544)
Q Consensus 158 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 236 (544)
....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+. |. .-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 345677887777 554333 012226666667777887777766532 11 112344567888888887
Q ss_pred HHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC
Q 044352 237 FSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH 316 (544)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (544)
.+.+ .+...|..+...+.+.++++.|.+.|.++.+ +..+...+...++.+...++.+.....|
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 6543 4667888888888889999998888887642 2233444444556655555544444433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 317 IDVFTGSALIDMYSKCGSLKDARTLFE 343 (544)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 343 (544)
.+.....+|.+.|++++|.+++.
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----chHHHHHHHHHcCCHHHHHHHHH
Confidence 12233334555666666655543
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.058 Score=56.09 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHH
Q 044352 328 MYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEI 407 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 407 (544)
.....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. +..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888776553 456788888888888888888888887644 33444444556666655554
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 408 FRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
.+..... | .++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444332 1 123333445566676666665544
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.84 E-value=0.023 Score=42.24 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--ChhHHHHHHHHHhhcCChHHH
Q 044352 400 LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVE---AYDLLRQVPMY--V--TNSMAGAFRNGCNIHGRRDLA 472 (544)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A 472 (544)
.+..+.+-|...... + .++..+-..+..++.+.....+ ++.+++.+... | .......++-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555554443 3 3666677777777777766555 67777765422 2 234566777789999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHH
Q 044352 473 VTMGEEFFEMGLRKPDGFVML 493 (544)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~~l 493 (544)
++.++.+++.+|.|..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887766543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.40 E-value=0.012 Score=43.83 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=58.9
Q ss_pred CCChhHHHHHHHHHhhcCChHH---HHHHHHHHHHcC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 450 YVTNSMAGAFRNGCNIHGRRDL---AVTMGEEFFEMG-L-RKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++..+-..+++++.+.++... ++.+++..++.+ | .....+..|+.++.+.|+|++|+++++.+++..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 5788888889999998886666 999999999887 5 466788999999999999999999999998754
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.36 E-value=0.018 Score=43.87 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHhCCCCchh-HHHHHHHH------HHhcCCHHHHHHHHHhCC
Q 044352 382 RANEVTLISVLSACSHGGLV------EKGLEIFRSMKERYGVKISKE-HYACVVDM------LCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 382 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~ 448 (544)
+-|+.+|...+....+.|+. ++.+++|++... .++|+.. .|...+.. +...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34667777777777666777 777777777766 4555421 12222111 123355566666665542
Q ss_pred --CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 449 --MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 449 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
.+.-.-.|...+..-.++|+...|++++.+++.+.|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 11113344444444455666666666666666665543333
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.28 Score=39.04 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHH
Q 044352 328 MYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEI 407 (544)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 407 (544)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888887777665 4566788888888888888888888877654 34444455556666655555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 044352 408 FRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEF 479 (544)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (544)
-+....+ | -++....++.-.|+++++.++|.+...-| .++ ......|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~--eA~----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLP--LAY----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH--HHH----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChH--HHH----HHHHHcCcHHHHHHHHHHh
Confidence 4444332 2 23344455666788888888777654211 111 1122345566666665543
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.18 E-value=0.039 Score=47.81 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=50.0
Q ss_pred hhhhhhHHhHHHhhcccc---hhhHHHHHHHHhhcC-----CChHHHHHHhccCC--CC--CchhHHHHHHHHHhc-CCH
Q 044352 28 ALRQGKQVHALLCTNDLN---IFSLKSKLVGVYAGC-----GDVNSARLVFDKIP--NP--NVFMLNWMVMASAFT-GNF 94 (544)
Q Consensus 28 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~--~~--~~~~~~~l~~~~~~~-~~~ 94 (544)
....|+..++++++..|+ .. +|..++..|.+. |+.++|.+.|++.. .| +..++......+++. |+.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~Gs-A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGA-VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHH-HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCcccCH-HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 445566666777776444 34 667777777663 66666666666654 22 255566666666663 666
Q ss_pred HHHHHHHHHHHhcccc
Q 044352 95 QEAIGYFSLMREFIYR 110 (544)
Q Consensus 95 ~~A~~~~~~~~~~~~~ 110 (544)
+.+...+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666664443
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.19 Score=39.97 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=24.4
Q ss_pred hcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044352 58 AGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMR 105 (544)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (544)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455555555554443 234455555555555555555555555554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.038 Score=55.49 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=50.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 461 NGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
..+...|+++-|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 456678999999999999999999999999999999999999999999999884
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.68 E-value=0.13 Score=38.98 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhH
Q 044352 417 VKISKEHYACVVDMLCRSGRMV---EAYDLLRQVP-MYV--TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGF 490 (544)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 490 (544)
-.|+..+-..+..++.+..+.+ +++.+++.+. ..| .......++-++.+.|++++|+++.+.+++.+|+|..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 3577788888888888877654 5667776653 222 344666677788899999999999999999999876654
Q ss_pred H
Q 044352 491 V 491 (544)
Q Consensus 491 ~ 491 (544)
.
T Consensus 115 ~ 115 (144)
T 1y8m_A 115 A 115 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.62 E-value=0.12 Score=39.38 Aligned_cols=51 Identities=10% Similarity=-0.040 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 467 GRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 467 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
+|.++|..+|+.++++...-+.+|...+..-.++|+...|++++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 455555555555554433333444444444555555555555555555433
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.44 E-value=0.14 Score=40.03 Aligned_cols=129 Identities=9% Similarity=-0.030 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----ccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHH
Q 044352 321 TGSALIDMYSKCGSLKDARTLFEITRI-----KNV-------ASWNAMIGCYGKHGMVDSSIELFERMLEEG-MRA-NEV 386 (544)
Q Consensus 321 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~ 386 (544)
.+..-+..+...|.++.|+-+.+.+.. +++ .++..+..++...|++.+|...|++.+... .-+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344456666777777777766554331 221 245556667777777777777777765421 111 111
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP-MYVTNSMAGAFRNGC 463 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 463 (544)
+...+. ....... ......+.+.-..+..+|.+.|++++|+.+++.++ ...++..-..|++.|
T Consensus 102 ~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 110000 0000000 00223445666678888888888888888888886 334455545554443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.41 E-value=0.048 Score=40.65 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--ChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHH
Q 044352 418 KISKEHYACVVDMLCRSGRMV---EAYDLLRQVP-MYV--TNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFV 491 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 491 (544)
.|+..+-..+..++.+..+.+ +++.+++.+. ..| ....+..++-++.+.|++++|+++.+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 466677777777777776543 4666666542 223 2445666777788888888888888888888887766544
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.22 E-value=3.3 Score=42.68 Aligned_cols=252 Identities=10% Similarity=-0.011 Sum_probs=132.9
Q ss_pred HHhcCChHHHHHHHHHhhhCC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-------CCCHH--HHHHHHH
Q 044352 224 YARRGDSNAAFAFFSRMTAEG--FVPDLVTWNAMISGFAQSKRENEALKLFKGMLVSGI-------KPNNV--TVTGVLQ 292 (544)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~~ 292 (544)
....|+.++++.++......+ -.+....-..+.-+....|..+++..++...+...- .+... ....+..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566667766666654311 011222333344556667776778888877665321 01111 1122223
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-c--cHHHHHHHHHHHHhcCChH
Q 044352 293 AGGLTGSIQIGREIHALVCRMGLHIDV--FTGSALIDMYSKCGSLKDARTLFEITRI-K--NVASWNAMIGCYGKHGMVD 367 (544)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~ 367 (544)
++...++. ++...+..+....- ... .+-..+...+.-.|+.+....++..+.. . +..-...+.-++...|+.+
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 33434443 44444444443321 111 1222344445567777777777665432 1 2223334444556789999
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044352 368 SSIELFERMLEEGMRANEV--TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLR 445 (544)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 445 (544)
.+..+++.+... ..|... ....+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 999998888774 223222 2233445677888987777788888763 23333333334444555677766777776
Q ss_pred hCCCCCChhHH--HHHHHHHhhcCC-hHHHHHHHHHHH
Q 044352 446 QVPMYVTNSMA--GAFRNGCNIHGR-RDLAVTMGEEFF 480 (544)
Q Consensus 446 ~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~~ 480 (544)
.+....++..- ..++-+....|+ ..+++..+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55433344433 333334444444 367777777775
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.06 E-value=0.75 Score=34.34 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=52.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC
Q 044352 248 DLVTWNAMISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCRMGLH 316 (544)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (544)
+.......+..+...|+.|+-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 445566677788888888888888888644 34777888888888888888888888888888888754
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.94 E-value=4 Score=42.12 Aligned_cols=400 Identities=10% Similarity=-0.011 Sum_probs=195.8
Q ss_pred HHHHHHHhhcCCChHHHHHHhccCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHH---------Hhc-ccccCHHHHHH
Q 044352 50 KSKLVGVYAGCGDVNSARLVFDKIP-NPNVFMLNWMVMASAFTGNFQEAIGYFSLM---------REF-IYRCNKFTFSI 118 (544)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~-~~~p~~~~~~~ 118 (544)
|..++++..+.++.+.+.++|..+. ..+...-.-+.--+.+.+.-.--..+.+.+ .+- +-.+....|..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~ 312 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNT 312 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHHH
Confidence 4456777788899999999999865 233332222333334433221111121111 110 00111233333
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCCC-Ch--hHHHHHHHHHHhCCCHHHH-HHHH-hhccC-CChhhHHH-HHHHHhc
Q 044352 119 VLKACVGLLDIKKGKQVHAVATQMGFEN-DV--SVGNALIDMYSKCGLLCSA-RRVF-HGMFE-RDVVSWTS-MISGYCN 191 (544)
Q Consensus 119 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~~~~~~A-~~~~-~~~~~-~~~~~~~~-l~~~~~~ 191 (544)
.+.-.. .-+. .+.+.++.. +.. +. .+-..+.+++...|-..+. .... +.+.+ .+..-+.+ ..-+...
T Consensus 313 FL~~~n-~~d~----~~l~~~K~~-ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh 386 (963)
T 4ady_A 313 FLLNNK-NIDI----GLLNKSKSS-LDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIH 386 (963)
T ss_dssp HHHHHC-CCCH----HHHHHHHHH-SCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHT
T ss_pred HHHhcc-ccch----hhHHHHHhh-hcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhc
Confidence 333221 1122 122222221 221 11 2234556667776643222 1111 12221 22222222 2335667
Q ss_pred cCChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC--C-----CCHhHHHHHHHHHHcC
Q 044352 192 VSKVDEAVVLFERMKLEG--LEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGF--V-----PDLVTWNAMISGFAQS 262 (544)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~ 262 (544)
.|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- . +....-..+.-+++-.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 889999988887765421 112222223344455566666677777776554310 0 1122223333344433
Q ss_pred CC-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044352 263 KR-ENEALKLFKGMLVSGIKPNN--VTVTGVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDAR 339 (544)
Q Consensus 263 ~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 339 (544)
|. -+++.+.+..++...- +.. ..-..+...+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 467 GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 467 GSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp TCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHH
Confidence 42 2466677777665321 111 112233344567788888888888776642 222222233334445678877777
Q ss_pred HHHHhcCC-ccHHH-H---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044352 340 TLFEITRI-KNVAS-W---NAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKER 414 (544)
Q Consensus 340 ~~~~~~~~-~~~~~-~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 414 (544)
.+++.+.. .++.. | .++..+|+..|+......++..+... ...+..-...+.-++...|+.+.+.+++..+.+
T Consensus 545 ~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~- 622 (963)
T 4ady_A 545 DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK- 622 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-
Confidence 77666552 33332 2 34455677889987777788888874 222333333333345556776666777665544
Q ss_pred hCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCChhHHHHHH
Q 044352 415 YGVKISKEHYACVVDMLCRSGRM-VEAYDLLRQVPMYVTNSMAGAFR 460 (544)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~ 460 (544)
...|....-..+.-+....|.. .+|.+.+..+...++..+-...+
T Consensus 623 -~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 623 -SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp -CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 2234444344444444445543 67888888886566655443333
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.81 E-value=0.055 Score=42.23 Aligned_cols=27 Identities=7% Similarity=-0.104 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 488 DGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
+.-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 566778888999999999999887654
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.52 E-value=4.1 Score=40.24 Aligned_cols=240 Identities=8% Similarity=-0.099 Sum_probs=115.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLD 128 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 128 (544)
.-......+.+.+++...+..+.. ++.+...-.....+....|+..+|....+.+-..|. ..+.....++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 455566667777888888886666 444554444556666777877777766666654432 233344444444443333
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhcc---------------------------CCChh-
Q 044352 129 IKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMF---------------------------ERDVV- 180 (544)
Q Consensus 129 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------------------~~~~~- 180 (544)
+.... ++ .-+......|+...|..+...+. .++..
T Consensus 152 lt~~~----------------~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~ 214 (618)
T 1qsa_A 152 QDPLA----------------YL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT 214 (618)
T ss_dssp SCHHH----------------HH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHH
T ss_pred CCHHH----------------HH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhh
Confidence 22111 11 11122222333333333322221 11111
Q ss_pred --hHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHH
Q 044352 181 --SWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAI----IASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNA 254 (544)
Q Consensus 181 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (544)
.+...+.-+.+ .+.+.|...+....... ..+......+ .......+...++...+...... ..+.....-
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 290 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHH
Confidence 11111222222 36677777776665433 2222222222 22222233244555555554433 233333333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 044352 255 MISGFAQSKRENEALKLFKGMLVSGIKPNNVTVTGVLQAGGLTGSIQIGREIHALVCR 312 (544)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (544)
.+....+.|+++.|...|..|.... .........+.++....|+.++|..+|..+.+
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444455677777777777665321 12333445556666667777777777777654
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.42 E-value=0.93 Score=34.31 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 450 YVTNSMAGAFRNGCNIHG---RRDLAVTMGEEFFEMGLR-KPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
.++..+-..+++++.+.. +..+++.+++..+..+|. ..+.+..|+..+.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 567777777777777665 445778888888877773 44567777888888888888888888887654
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.35 E-value=1.7 Score=46.85 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhCCCHHHHHHHHhhccCCC--hhhHHHHHH
Q 044352 114 FTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV----SVGNALIDMYSKCGLLCSARRVFHGMFERD--VVSWTSMIS 187 (544)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~ 187 (544)
.-|..++..+.+.+.++.+.+.-....+..-+.+. ..|..+...+...|++++|...+-.++... ......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45677777777777777777777666654322222 256677777888888888877776654322 334555555
Q ss_pred HHhccCCh
Q 044352 188 GYCNVSKV 195 (544)
Q Consensus 188 ~~~~~~~~ 195 (544)
.+|..|..
T Consensus 980 ~lce~~~~ 987 (1139)
T 4fhn_B 980 QLTKQGKI 987 (1139)
T ss_dssp HHHHHCCH
T ss_pred HHHhCCCh
Confidence 55555443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.13 E-value=0.14 Score=47.64 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=43.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCC
Q 044352 458 AFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKE-----KNVQKQP 522 (544)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 522 (544)
.++..+...|++++|+..++.++..+|-+...+..++.+|.+.|+..+|++.|+++.+ .|++|.|
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3444556667777777777777777777777777777777777777777777666543 3555544
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.91 E-value=0.5 Score=35.25 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 450 YVTNSMAGAFRNGCNIHG---RRDLAVTMGEEFFEMGLR-KPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
.|++.+-..+++++.+.. +..+++.+++..++.+|. ....+..|+-++.+.|++++|+++.+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445555556666665554 334566666666666652 3455666666677777777777766666654
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.19 E-value=7.9 Score=36.53 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCC--Hh
Q 044352 182 WTSMISGYCNVSKVDEAVVLFERMKLE--GLEPN---QFTYNAIIASYARRGDSNAAFAFFSRMTA----EGFVPD--LV 250 (544)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~ 250 (544)
...|...+...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887533 21111 23455667788888888888888877632 211222 23
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044352 251 TWNAMISGFAQSKRENEALKLFKGMLV 277 (544)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (544)
.+...+..+...+++.+|...|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456666777778888888888777754
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.26 E-value=2.2 Score=43.02 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=37.3
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 393 SACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
..|...|+++.|+.+-++.... .|.+-.+|..|..+|...|+++.|+-.++.+|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455677777777777777652 34456777777777777777777777777664
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.94 E-value=1.2 Score=31.23 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.++.+.+ +...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446777777777778899999999999999999999999999999987633 33456766654
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.83 E-value=3 Score=29.04 Aligned_cols=99 Identities=10% Similarity=-0.118 Sum_probs=70.8
Q ss_pred HHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHH
Q 044352 16 LDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQ 95 (544)
Q Consensus 16 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (544)
+..++.+-.-....++|..+.+.+...+.... +....+..+...|++++|..+.+....||...|-.+.. .+.|--+
T Consensus 9 LAE~AL~gTG~H~HqEA~tIAdwL~~~~~~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s 85 (115)
T 2uwj_G 9 LAELALAGSGQHCHEEALCIAEWLERLGQDEA-ARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGA 85 (115)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHH
Confidence 33444444455578889888888777743444 55555667788999999999999999999998887765 5678888
Q ss_pred HHHHHHHHHHhcccccCHHHHHH
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSI 118 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ 118 (544)
++...+.++...| .|....|..
T Consensus 86 ~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 86 ALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHH
Confidence 8888887777665 345445543
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.72 E-value=10 Score=34.92 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=27.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 390 SVLSACSHGGLVEKGLEIFRSMKERYGVKIS----KEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
.++..|...|++.+|.+++..+.+...-..+ .+++..-+..|...|++.++...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455555556666665555555543221111 122333344455555655555555443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.62 E-value=3.2 Score=28.96 Aligned_cols=99 Identities=11% Similarity=-0.078 Sum_probs=70.6
Q ss_pred HHHHHHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHH
Q 044352 16 LDCLLGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQ 95 (544)
Q Consensus 16 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (544)
+..++.+-.-....++|..+.+.+...+.... +....+..+...|++++|..+.+....||...|-.+.. .+.|--+
T Consensus 10 LAE~AL~gTG~H~HqEA~tIAdwL~~~~~~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s 86 (116)
T 2p58_C 10 LAEIALIGTGNHYHEEANCIAEWLHLKGEEEA-VQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGS 86 (116)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHH
Confidence 44444444555678889888888777743444 55555667788999999999999999999998887765 4677778
Q ss_pred HHHHHHHHHHhcccccCHHHHHH
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSI 118 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ 118 (544)
++...+.++...| .|....|..
T Consensus 87 ~le~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 87 ALESRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHH
Confidence 8888777777654 344444443
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.14 E-value=3.7 Score=35.08 Aligned_cols=120 Identities=11% Similarity=0.013 Sum_probs=71.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchh----HHHHHHHHHHhc
Q 044352 359 CYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKE----HYACVVDMLCRS 434 (544)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 434 (544)
...+.|+.++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+.. .|..++.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH---
Confidence 4566788888888888777762 557777777888888888888888888877654 34432 333333221
Q ss_pred CCHHHHH-HHHHh--CC-CCCChhHH-HHHHHH--HhhcCChHHHHHHHHHHHHcCCCCchh
Q 044352 435 GRMVEAY-DLLRQ--VP-MYVTNSMA-GAFRNG--CNIHGRRDLAVTMGEEFFEMGLRKPDG 489 (544)
Q Consensus 435 g~~~~A~-~~~~~--~~-~~~~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 489 (544)
... ++|.- .+ ....+..| ..++.+ ....|+.++|..+-.++.+.-|..+..
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111 22221 11 11112223 233333 335688888888888888877765543
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.79 E-value=10 Score=33.52 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044352 317 IDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKH---GMVDSSIELFERMLEEGMRANEVTLISVLS 393 (544)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 393 (544)
-++.....+...|.+.|++.+|...|-.....++..+..++.-+... |...++--++ ... +-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra-VL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL-VF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH-HH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH-HH
Confidence 37788889999999999999999988744333555555544444333 3333221111 111 22
Q ss_pred HHhcCCchHHHHHHHHHHHHH
Q 044352 394 ACSHGGLVEKGLEIFRSMKER 414 (544)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~ 414 (544)
-|.-.|+...|..+++...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 345678899999988877654
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.25 E-value=4 Score=37.71 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HhCCCCchhHH
Q 044352 353 WNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKE----RYGVKISKEHY 424 (544)
Q Consensus 353 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 424 (544)
...++..+...|++.+++..+..+... .+.+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566677788888888888887775 355777888888888888888888888877644 34777776654
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.18 E-value=14 Score=39.95 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=117.6
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCc--------------------
Q 044352 289 GVLQAGGLTGSIQIGREIHALVCRMGLHIDVFTGSALIDMYSKCGSLKDARTLFEITRIK-------------------- 348 (544)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 348 (544)
.++..+...+..+.+..+... .+.++.....++.++...|++++|.++|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556666666666554432 2334555566788899999999999999876420
Q ss_pred ------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCC
Q 044352 349 ------NVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANE----VTLISVLSACSHGGLVEKGLEIFRSMKERYGVK 418 (544)
Q Consensus 349 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 418 (544)
-..-|..++..+.+.|.++.+.++-+..++.....+. ..|..+...+...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123677788888899999999988888775322222 25677888899999999999888777542 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHH------------HHHHh-CC----CCCChhHHHHHHHHHhhcCChHH-HHHHHHHHH
Q 044352 419 ISKEHYACVVDMLCRSGRMVEAY------------DLLRQ-VP----MYVTNSMAGAFRNGCNIHGRRDL-AVTMGEEFF 480 (544)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~A~------------~~~~~-~~----~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 480 (544)
.....+..++..++..|+.+.-. +++.. +. ....+..|..|-.-+...|++.+ |..+|+.+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 44667888888777776655433 22221 10 11112233333333445566554 466777776
Q ss_pred Hc
Q 044352 481 EM 482 (544)
Q Consensus 481 ~~ 482 (544)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.17 E-value=1.1 Score=38.32 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 044352 431 LCRSGRMVEAYDLLRQV-P-MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLR 485 (544)
Q Consensus 431 ~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 485 (544)
+.+.|.+++|++....- . .+.|...-..++..++-.|++++|.+-++...+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34455555555544432 1 2334444445555555555555555555555555553
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.55 E-value=14 Score=32.53 Aligned_cols=127 Identities=8% Similarity=0.035 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHH----HHHHHhcccccCHHHHHHHHHHhh
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGY----FSLMREFIYRCNKFTFSIVLKACV 124 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~ll~~~~ 124 (544)
.+..+..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334444455566777777776543 23345566776665554 344445577778777777777665
Q ss_pred CCCChH-HHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHH
Q 044352 125 GLLDIK-KGKQVHAVA----TQMG--FENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMI 186 (544)
Q Consensus 125 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 186 (544)
.....+ .=.++.+.+ .+.| ..-++.....+...|.+.|++.+|+..|-.....|...+..++
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l 172 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLL 172 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHH
Confidence 432111 112222222 2332 1235667777777788888887777766522222344444333
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.97 E-value=2.8 Score=31.19 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044352 365 MVDSSIELFERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVD 429 (544)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (544)
|.-+..+-++.+....+.|++.+....+.+|.+.+++..|.++++-++.+.+ +...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666777777778899999999999999999999999999999988633 34556766654
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.18 E-value=5.5 Score=27.93 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 044352 94 FQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 94 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 142 (544)
.-+...-++.+...++.|++......+++|.+.+++..|.++++-++..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555556666666666666666666666666666655544
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.54 E-value=7.3 Score=27.15 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=60.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 125 GLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|.++.. .+.|-.+++...+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34466777777777776642 22222233445677899999999999888888888887765 366777777777777
Q ss_pred HHHcCCCCCHhhHH
Q 044352 205 MKLEGLEPNQFTYN 218 (544)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (544)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77666 55554443
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.47 E-value=13 Score=30.09 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcC
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTG 92 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (544)
.....+..+...|..+....+.+.+..++...-...+.++...+
T Consensus 30 vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 33333444444443333333333333333333333333333333
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.05 E-value=7.8 Score=27.06 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 044352 125 GLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFER 204 (544)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (544)
.....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|.++... +.|-.+++...+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34466777777777766542 222222334446778888888888888888888888777653 56777777777767
Q ss_pred HHHcCCCCCHhhHH
Q 044352 205 MKLEGLEPNQFTYN 218 (544)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (544)
+..+| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 66555 45444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.58 E-value=11 Score=30.59 Aligned_cols=47 Identities=11% Similarity=-0.200 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCC----CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 437 MVEAYDLLRQVP----MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 437 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
..++.++|.-|- ...-...|...+..+...|++.+|.++|+..++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445555554441 23334445555555556666666666666666544
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.68 E-value=29 Score=32.60 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHh-CCCCc----
Q 044352 351 ASWNAMIGCYGKHGMVDSSIELFERMLEE--GMRAN---EVTLISVLSACSHGGLVEKGLEIFRSMKERY-GVKIS---- 420 (544)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---- 420 (544)
.....|...+...|++.+|..++..+... |..+. ...+...+..|...+++..|..++.++.... ...+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34566788888899999999999988653 22221 2356667778889999999999998875421 12222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
...+...+..+...+++.+|...|.++
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 234566677788889999998877665
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.53 E-value=17 Score=29.73 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCC
Q 044352 44 LNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGN 93 (544)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (544)
++.. .....+..+.+.|+.+..-.+.+.+..++...-...+.++...++
T Consensus 31 ~~~~-vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYY-VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHH-HHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHH-HHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4444 445555555555553333333343444444444444444444443
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.78 E-value=20 Score=29.29 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 044352 150 VGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD 229 (544)
Q Consensus 150 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 229 (544)
+....+.++...++.+....+.+.+..++...-...+.++...++.+. ...+..+.. .++...-...+.++.+.++
T Consensus 66 vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 66 VRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 333333344444433333333333333444444444444444444322 222222221 3444444444444444444
Q ss_pred hHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044352 230 SNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGMLV 277 (544)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (544)
.+ +...+..+.+ .++..+-...+.++.+.+. ..+...+..+.+
T Consensus 142 ~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 142 ER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 32 2233333322 3444444445555555544 344444555443
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.97 E-value=35 Score=30.39 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHH----HHHHhcccccCHHHHHHHHHHhh
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYF----SLMREFIYRCNKFTFSIVLKACV 124 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~ll~~~~ 124 (544)
.+..+..-|.+.+++++|++++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344455556677888888876543 234455667776655554 44455677888877777777776
Q ss_pred CCCChH-HHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhCCCHHHHHHHHh
Q 044352 125 GLLDIK-KGKQVHAVA----TQMG--FENDVSVGNALIDMYSKCGLLCSARRVFH 172 (544)
Q Consensus 125 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 172 (544)
....-+ .=..+.+.+ .+.| ..-++.....+...|.+.+++.+|+..|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 554311 112222222 2222 23456667777777888888888777664
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.94 E-value=24 Score=28.49 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=25.1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044352 212 PNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKRENEALKLFKGML 276 (544)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (544)
++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...|. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34444344444444444432 2222333222 2344444444555555444 33444444444
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.91 E-value=18 Score=27.02 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 044352 96 EAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALI 155 (544)
Q Consensus 96 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 155 (544)
+...-++.+...++.|++......+++|.+.+|+..|.++++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444455555555566666666666666666666666666666655442 23344444443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.25 E-value=7.9 Score=36.33 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc---ccccCHHH--HH
Q 044352 49 LKSKLVGVYAGCGDVNSARLVFDKIP------NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREF---IYRCNKFT--FS 117 (544)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~--~~ 117 (544)
++..++..|.+.|+++.|.+.|.++. ..-...+-..++.+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 66778999999999999999998876 222346777888888899999999888887543 22222221 11
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHc
Q 044352 118 IVLKACVGLLDIKKGKQVHAVATQM 142 (544)
Q Consensus 118 ~ll~~~~~~~~~~~a~~~~~~~~~~ 142 (544)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345678899888887776554
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.28 E-value=23 Score=27.28 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 044352 472 AVTMGEEFFEMG--LRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQK 520 (544)
Q Consensus 472 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 520 (544)
+..+|..+...+ -..+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666665533 4445556666666666677777766666666554443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.00 E-value=13 Score=34.73 Aligned_cols=96 Identities=8% Similarity=-0.074 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHH--H
Q 044352 320 FTGSALIDMYSKCGSLKDARTLFEITRI------KNVASWNAMIGCYGKHGMVDSSIELFERMLEE---GMRANEVT--L 388 (544)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 388 (544)
.+...+...|.+.|+++.|.+++.++.. .-...+-..++.+...+++..+...+.+.... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788889999999999999887763 23457788888888899999999988887553 22232222 1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHh
Q 044352 389 ISVLSACSHGGLVEKGLEIFRSMKERY 415 (544)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (544)
..-...+...+++..|...|-.+...+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222233456788999999888887763
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.18 E-value=69 Score=31.82 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhc
Q 044352 150 VGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCN 191 (544)
Q Consensus 150 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 191 (544)
+| .++-.+.++|++++|.++.++... .-...|..++..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 44 456678899999999998877643 222456666666664
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.30 E-value=31 Score=26.94 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 453 NSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
...|...+..+-..|++.+|.++|+..++.+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444445555555555555555555544
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.36 E-value=37 Score=27.50 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHHhccCC--CCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHH
Q 044352 65 SARLVFDKIP--NPNVFM---LNWMVMASAFTGNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAV 138 (544)
Q Consensus 65 ~A~~~~~~~~--~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 138 (544)
.+.+.|.... ..|+.- |-..+..+ ..++..++.++|..|...|+... +..|......+...|++.+|..+|..
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443 445543 33333332 24557789999999998877644 44677777888889999999999999
Q ss_pred HHHcCCCCChh
Q 044352 139 ATQMGFENDVS 149 (544)
Q Consensus 139 ~~~~~~~~~~~ 149 (544)
-++.+..|-..
T Consensus 141 GI~~~A~P~~r 151 (202)
T 3esl_A 141 GAENNCRPYNR 151 (202)
T ss_dssp HHHTTCBSHHH
T ss_pred HHHcCCccHHH
Confidence 88887666443
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.20 E-value=63 Score=29.65 Aligned_cols=291 Identities=9% Similarity=-0.028 Sum_probs=147.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCC---CHhHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCCCHHHH-
Q 044352 214 QFTYNAIIASYARRGDSNAAFAFFSRMTAE-GFVP---DLVTWNAMISGFAQS-KRENEALKLFKGMLVSGIKPNNVTV- 287 (544)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 287 (544)
......+...|.+.|+.++..+++.....- +..| .......++..+... +..+.-.++..+.++.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345567888899999999988888876532 1111 233455667666653 33444455555544321 1111222
Q ss_pred -----HHHHHHhhccCchHHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------ccHH
Q 044352 288 -----TGVLQAGGLTGSIQIGREIHALVCRM--GLH---IDVFTGSALIDMYSKCGSLKDARTLFEITRI------KNVA 351 (544)
Q Consensus 288 -----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~ 351 (544)
..++..|...|++.+|..++..+.+. ... .-..++..-+..|...+++.++...+..... +++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25677788888888888777777653 111 1133455566777778888877777754431 2222
Q ss_pred H----HHHHHHHHH-hcCChHHHHHHHHHHHHcCCCC-CH-----HHHHHHHHHHhcCCchHHHHHHHH-HHHHHhCCCC
Q 044352 352 S----WNAMIGCYG-KHGMVDSSIELFERMLEEGMRA-NE-----VTLISVLSACSHGGLVEKGLEIFR-SMKERYGVKI 419 (544)
Q Consensus 352 ~----~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 419 (544)
. ...-...+. ..++|..|...|-+....--.. ++ ..|..+ .+. -.++..+...++. .....+ ..|
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhcccccccc-CCc
Confidence 1 122223355 6778888877766654320011 11 112111 122 2222222223222 222221 234
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044352 420 SKEHYACVVDMLCRSGRMVEAYDLLRQVP--MYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNIC 497 (544)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 497 (544)
....+..++.+| ..+++.+...+++... ...|+.....+-..+... .. ..+.++ ..|-....+..++..+
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--r~---~~L~~i--~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--LE---QNLCRI--IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--HH---HHHHHH--HTTCSEEEHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HH---HHHHHH--hHhhceeeHHHHHHHH
Confidence 444455555443 4556666666666543 222332211110000000 00 111111 2366667777777766
Q ss_pred HhcCChHHHHHHHHHHHhcCC
Q 044352 498 AADGEWHEAENLRKIMKEKNV 518 (544)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~~ 518 (544)
.- ..+++...+-+|+..|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 43 68899999999987664
No 281
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.90 E-value=64 Score=28.76 Aligned_cols=83 Identities=10% Similarity=-0.025 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044352 316 HIDVFTGSALIDMYSKCGSLKDARTLFEITRIKNVASWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSAC 395 (544)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (544)
.-++.....+...|.+.+++.+|...|-....+.+..+..++.-+...+...++- ...... +--|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRa-VL~y 197 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARA-VLPY 197 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHH-HHHH
Confidence 3467788888899999999999988885333333455544444443333222211 111122 2234
Q ss_pred hcCCchHHHHHHHHHHHH
Q 044352 396 SHGGLVEKGLEIFRSMKE 413 (544)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~ 413 (544)
...++...|..+++...+
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 556788888777666554
No 282
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=67.99 E-value=18 Score=34.56 Aligned_cols=56 Identities=5% Similarity=-0.044 Sum_probs=36.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044352 459 FRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
++...+-....+.|..+|.++..+.|.+..+|+.||.+....|+.-+|.-+|-+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444444556677777777777777777777777777777776666665554443
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.06 E-value=17 Score=34.63 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSM 411 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (544)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3445555555555555555555444
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.66 E-value=81 Score=33.17 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhCC
Q 044352 114 FTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV----SVGNALIDMYSKCG 162 (544)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 162 (544)
.-|..++..+-+.+-++-+.++-...++.--+.|. ..+..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788888888888888888888877765323333 25566666665443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=60.93 E-value=31 Score=27.68 Aligned_cols=71 Identities=13% Similarity=-0.046 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCChh-------HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHH
Q 044352 437 MVEAYDLLRQVPMYVTNS-------MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAE 507 (544)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 507 (544)
++.|+.+|+.+...-+.. .-......|.+.|.+++|.+++++....++.+...-.-|..+-.+.+-+..-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 345666666664222211 11223346888888999999888888877766666666666655555444333
No 286
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.72 E-value=89 Score=27.54 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 044352 455 MAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKN 517 (544)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (544)
++...+....+.+++..|..+.+++++++|. ....++|.+++....+.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNKADSMA 257 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHhcCC
Confidence 4556666788999999999999999999984 224455777777766543
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.61 E-value=80 Score=27.76 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCccH---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHH
Q 044352 323 SALIDMYSKCGSLKDARTLFEITRIKNV---ASWNAMIGCYGKHGM--VDSSIELFERMLEEGMRANEVT 387 (544)
Q Consensus 323 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~ 387 (544)
..++.-|...|+.++|.+.++.+..|.. .+...+..++-+.++ .+....++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567778888999999999999887632 234444444444322 3456677777777665554443
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.28 E-value=74 Score=33.47 Aligned_cols=52 Identities=6% Similarity=-0.057 Sum_probs=32.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044352 391 VLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQVP 448 (544)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (544)
++..|...|.++-+.++. . ..+.++..-..++.+|...|++++|.+.|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555666667666554432 2 233344444456777888888888888888763
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.86 E-value=60 Score=27.22 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=16.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044352 84 MVMASAFTGNFQEAIGYFSLMRE 106 (544)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~ 106 (544)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677778888888888777654
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.78 E-value=75 Score=26.97 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=7.9
Q ss_pred hcCCChHHHHHHhcc
Q 044352 58 AGCGDVNSARLVFDK 72 (544)
Q Consensus 58 ~~~g~~~~A~~~~~~ 72 (544)
+..|+.+-...+++.
T Consensus 47 ~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 47 VQMSREDIVELLLRH 61 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 345555555555544
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.64 E-value=74 Score=24.44 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCCh
Q 044352 97 AIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDV 148 (544)
Q Consensus 97 A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 148 (544)
+.++|..|...|+... +..|......+...|++.+|..++..-++.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 6677777776665433 334566666666777777777777777766655533
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.27 E-value=45 Score=27.56 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044352 451 VTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (544)
.....|...+..+...|++.+|..+|+..++.+
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345556666666677777777777777777655
No 293
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.01 E-value=1.1e+02 Score=26.16 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=8.9
Q ss_pred CCHhHHHHHHHHHHcCCC
Q 044352 247 PDLVTWNAMISGFAQSKR 264 (544)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~ 264 (544)
++..+-...+.++.+.|+
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444445555555554
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.41 E-value=52 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044352 418 KISKEHYACVVDMLCRSGRMVEAYDLLRQ 446 (544)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (544)
.++.......+..+.+.|+.++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34445555566667777777777776643
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.24 E-value=85 Score=24.47 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=52.2
Q ss_pred HHHHHHhccCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 044352 64 NSARLVFDKIP--NPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVAT 140 (544)
Q Consensus 64 ~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 140 (544)
+.+.+.|.... ..|+.-...-+...-..+ .+.++|..|...|+... +..|......+...|++.+|..+|..-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444443 445544333332222223 36678888888876543 4457777777778888999999988888
Q ss_pred HcCCCCChhH
Q 044352 141 QMGFENDVSV 150 (544)
Q Consensus 141 ~~~~~~~~~~ 150 (544)
+.+..|-...
T Consensus 124 ~~~A~P~~~L 133 (164)
T 2wvi_A 124 QQKAEPLERL 133 (164)
T ss_dssp HTTCBSHHHH
T ss_pred HcCCCcHHHH
Confidence 8876665443
No 296
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=50.97 E-value=1e+02 Score=25.17 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=43.5
Q ss_pred CCchhHHHHHHHH---HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCC
Q 044352 76 PNVFMLNWMVMAS---AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLD-----IKKGKQVHAVATQMGFE 145 (544)
Q Consensus 76 ~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 145 (544)
.+-.....+|+++ .+..+++.|+-++-+|++.|-.|....-..++-+.-..|. ...|...++.....|.|
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444555666666 4568999999999999998877766666666665544442 23455555555566643
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.94 E-value=82 Score=24.19 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCccH---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 044352 322 GSALIDMYSKCGSLKDARTLFEITRIKNV---ASWNAMIGCYGKHGM--VDSSIELFERMLEEGMRANEV 386 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 386 (544)
...++.-|...|+.++|.+.++.+..|.. .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34577788888999999999998876532 234444445444322 345667777777666544443
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=49.79 E-value=1e+02 Score=24.91 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=42.7
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCCC
Q 044352 79 FMLNWMVMAS---AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLD-----IKKGKQVHAVATQMGFEN 146 (544)
Q Consensus 79 ~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 146 (544)
.....+|+++ .+..+++.|+-++-+|++.| .|....-..++-+.-..|. ...|...++.....|.|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444556655 45689999999999999988 6666655666666554443 233445555556666443
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.25 E-value=1.2e+02 Score=25.76 Aligned_cols=18 Identities=6% Similarity=-0.125 Sum_probs=6.9
Q ss_pred CCHhHHHHHHHHHHcCCC
Q 044352 247 PDLVTWNAMISGFAQSKR 264 (544)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~ 264 (544)
++..+-...+.++...++
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.12 E-value=82 Score=26.70 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=7.3
Q ss_pred HhcCCHHHHHHHHH
Q 044352 330 SKCGSLKDARTLFE 343 (544)
Q Consensus 330 ~~~~~~~~A~~~~~ 343 (544)
+..|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455555555554
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.25 E-value=1.4e+02 Score=25.67 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCChHH
Q 044352 157 MYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQF-TYNAIIASYARRGDSNA 232 (544)
Q Consensus 157 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 232 (544)
..+..|+.+-+..+++.-.. .+...+.+.+...+..|+.+ +++.+.+.|..+... .-...+...+..|+.+-
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 34456666666555554322 22222223333344455543 333333334332111 22233444455666655
Q ss_pred HHHHHHH
Q 044352 233 AFAFFSR 239 (544)
Q Consensus 233 a~~~~~~ 239 (544)
+.-+++.
T Consensus 177 v~~Ll~~ 183 (285)
T 3kea_A 177 MILLLDY 183 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555444
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.71 E-value=89 Score=23.12 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCccH---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 044352 322 GSALIDMYSKCGSLKDARTLFEITRIKNV---ASWNAMIGCYGKHGM--VDSSIELFERMLEEGMRANEV 386 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 386 (544)
...++.-|...|+.++|.+.++.+..|.. .+...+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34577778888999999999998876532 234444445444432 345677777777766554443
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.56 E-value=1.3e+02 Score=24.88 Aligned_cols=117 Identities=11% Similarity=0.042 Sum_probs=61.0
Q ss_pred hhhhhhHHhHHHhhc---ccchhhHHHHHHHHhhcC---C-C--------hHHHHHHhccCC--CCCchhHHHHHHHHHh
Q 044352 28 ALRQGKQVHALLCTN---DLNIFSLKSKLVGVYAGC---G-D--------VNSARLVFDKIP--NPNVFMLNWMVMASAF 90 (544)
Q Consensus 28 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~---g-~--------~~~A~~~~~~~~--~~~~~~~~~l~~~~~~ 90 (544)
.+...++.|+..+.. .+|+-..|...+...... | . ++.+.+.|.... ..|+.-...-+. |+.
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~ 128 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVN 128 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHH-HHH
Confidence 355556666655543 334433666666643321 2 1 223333333333 333332222222 222
Q ss_pred cCCHHHHHHHHHHHHhcccccC-HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCC
Q 044352 91 TGNFQEAIGYFSLMREFIYRCN-KFTFSIVLKACVGLLDIKKGKQVHAVATQMGFEND 147 (544)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 147 (544)
. .+.+.++|..|...|+... +..|......+...|++.+|..+|..-++.+-.|-
T Consensus 129 ~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 129 Y--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp T--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred c--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 1 2355677777777665533 34566666666677777777777777777665553
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.33 E-value=1.4e+02 Score=26.28 Aligned_cols=73 Identities=8% Similarity=0.116 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhCCCCchhHHHH
Q 044352 352 SWNAMIGCYGKHGMVDSSIELFERMLEEGMRANEVTLISVLSACSHGGL--VEKGLEIFRSMKERYGVKISKEHYAC 426 (544)
Q Consensus 352 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (544)
....++.-|...|+.++|...++++....+. ...+...+..++.+.++ .+....++..+.+. ++-+.......
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~G 242 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHHH
Confidence 3567788888999999999999988532111 12344455555655433 45566777777765 55544444333
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=44.67 E-value=1.2e+02 Score=24.38 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHhc---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 044352 184 SMISGYCN---VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRG 228 (544)
Q Consensus 184 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (544)
.+|+++.+ ..+.+.|+-.+.+|++.|..|.-..-..++.+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34444443 4778888888888888776665555454444444333
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.05 E-value=1.3e+02 Score=24.37 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHHhc---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHhhhCCC
Q 044352 184 SMISGYCN---VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD-----SNAAFAFFSRMTAEGF 245 (544)
Q Consensus 184 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 245 (544)
.+|+++.+ ..+.+.|+-.+.+|++.| .|.-..-..++.+.-.-|. ...|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444443 577888888888888888 6655554555555544442 2334444555555553
No 307
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.51 E-value=1.8e+02 Score=26.13 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HhHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCCHH
Q 044352 217 YNAIIASYARRGDSNAAFAFFSRMTAEGFVPD---LVTWNAMISGFAQSKR--ENEALKLFKGMLVSGIKPNNV 285 (544)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 285 (544)
...++.-|...++.++|...++++. .|. ..+...+..++-+.++ .+.+.+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~----~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC----CTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc----CCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3567778888889999998888887 342 2233344445544433 345777777777766544433
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.47 E-value=62 Score=30.87 Aligned_cols=68 Identities=9% Similarity=-0.057 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----h---hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCch
Q 044352 421 KEHYACVVDMLCRSGRMVEAYDLLRQVPMYVT----N---SMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPD 488 (544)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 488 (544)
...++.+++.|...+.+++|..+..+...+.. . ..+..++..+...+++.+|.+.+..++..-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45678889999999999999999998753321 1 12334556777889999999999999988876543
No 309
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.76 E-value=1.4e+02 Score=24.11 Aligned_cols=48 Identities=6% Similarity=-0.147 Sum_probs=32.1
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCC
Q 044352 80 MLNWMVMAS---AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLL 127 (544)
Q Consensus 80 ~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 127 (544)
....+|+++ .+..+++.|+-++-+|++.|-.|....-..++-+.-..|
T Consensus 6 ~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 6 RFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344455555 456889999999999999887666655555555544333
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=39.86 E-value=38 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 044352 491 VMLSNICAADGEWHEAENLRKIM 513 (544)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~ 513 (544)
...+..+.+.|+|++|++..++.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 33455555566666665554444
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.07 E-value=2.5e+02 Score=26.30 Aligned_cols=43 Identities=7% Similarity=-0.149 Sum_probs=25.8
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHh
Q 044352 81 LNWMVMAS---AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKAC 123 (544)
Q Consensus 81 ~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 123 (544)
+..++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.
T Consensus 255 ~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 255 FYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33444444 34577888888888888877665544444444443
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.05 E-value=1.6e+02 Score=23.94 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhc---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHhhhCC
Q 044352 180 VSWTSMISGYCN---VSKVDEAVVLFERMKLEGLEPNQFTYNAIIASYARRGD-----SNAAFAFFSRMTAEG 244 (544)
Q Consensus 180 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 244 (544)
.....+|+++.+ ..+++.|+-.+.+|++.|..|.-..-..++.+.-.-|. ...|...++.....|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 334445555544 57888888888888888876666555555555544442 234445555555555
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.88 E-value=1.3e+02 Score=22.85 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 374 ERMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
+.+.+.|+++++.= ..++..+...+..-.|.++++.+.+. +...+..+....+..+...|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 34555666665542 23344444555667788888888765 555565555555555655553
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.32 E-value=1.3e+02 Score=23.42 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=8.7
Q ss_pred cCChHHHHHHHHHHHHcC
Q 044352 466 HGRRDLAVTMGEEFFEMG 483 (544)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~ 483 (544)
.|++-+|-++++.+....
T Consensus 45 ~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp TTCHHHHHHHHHHHTTTT
T ss_pred CCCchHHHHHHHHHHHhc
Confidence 345555555555554443
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.73 E-value=54 Score=22.79 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=29.3
Q ss_pred CCHHHHHHHHhhccCCChhhHHHHHHHHhccCChhHHH
Q 044352 162 GLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVDEAV 199 (544)
Q Consensus 162 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 199 (544)
...++|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.52 E-value=40 Score=28.47 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccC
Q 044352 86 MASAFTGNFQEAIGYFSLMREFIYRCN 112 (544)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~p~ 112 (544)
...++.|+.+....+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 334456666666666665555554444
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.40 E-value=1.3e+02 Score=22.32 Aligned_cols=60 Identities=10% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 375 RMLEEGMRANEVTLISVLSACSHGG-LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
.+.+.|+++++.=. .++..+...+ ..-.|.++++.+.+. +...+..+...-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCc
Confidence 35566776665532 3344444555 566788888888765 545565565555555555553
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.51 E-value=1.4e+02 Score=22.80 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 374 ERMLEEGMRANEVTLISVLSACSHGG-LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+. +...+..|....+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCc
Confidence 345567777666532 3344444554 566788888888765 545566665555566655553
No 319
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.12 E-value=95 Score=30.95 Aligned_cols=63 Identities=6% Similarity=-0.108 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCh
Q 044352 438 VEAYDLLRQVPMYVTNSMAGAFRNGCNIHGRRDLAVTMGEEFFEMGLRKPDGFVMLSNICAADGEW 503 (544)
Q Consensus 438 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 503 (544)
+.|.++.+-|. ........+......|++..|.++.+.++..+|+|..+...++.+|...|.-
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 45555666554 3334444555667899999999999999999999999999999998887733
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.90 E-value=2.5e+02 Score=23.94 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=87.1
Q ss_pred hcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHH---HHHHHHHHhhCCCChHHHHH
Q 044352 58 AGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKF---TFSIVLKACVGLLDIKKGKQ 134 (544)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~ 134 (544)
+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+ .+...+..|+.+-+.-
T Consensus 39 ~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 39 IADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHH
Confidence 4578888777777764322222112344455666775544 3344445444321 122 2333345666655544
Q ss_pred HHHHHHHcCCCCChh---HHHHHHHHHHhCCCHHHHHHHHhhccCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 044352 135 VHAVATQMGFENDVS---VGNALIDMYSKCGLLCSARRVFHGMFER-DVVSWTSMISGYCNVSKVDEAVVLFERMKLEGL 210 (544)
Q Consensus 135 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (544)
+++ .|..++.. -+.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.-.....
T Consensus 114 Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~ 189 (285)
T 3kea_A 114 FVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189 (285)
T ss_dssp HHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT
T ss_pred HHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc
Confidence 443 34333321 1123445556778887777777665432 221233444455667777666555554332221
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhH
Q 044352 211 EPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVT 251 (544)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (544)
.+..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 190 -~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 190 -NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp -TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred -ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 1111112223333445554 34455566666665543
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.66 E-value=96 Score=23.45 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 044352 103 LMREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLL 164 (544)
Q Consensus 103 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (544)
.+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34555665554432 33334444455667777777777665455555555556667766643
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.33 E-value=2e+02 Score=22.59 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=10.9
Q ss_pred hcCCChHHHHHHhccCC
Q 044352 58 AGCGDVNSARLVFDKIP 74 (544)
Q Consensus 58 ~~~g~~~~A~~~~~~~~ 74 (544)
+..|+.+....++..-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 45677777777776543
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.05 E-value=2e+02 Score=22.62 Aligned_cols=27 Identities=4% Similarity=-0.073 Sum_probs=14.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCH
Q 044352 188 GYCNVSKVDEAVVLFERMKLEGLEPNQ 214 (544)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 214 (544)
..+..|+.+.-.++.+.+.+.|..++.
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 334455555445555556666655543
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.49 E-value=53 Score=27.66 Aligned_cols=20 Identities=25% Similarity=0.072 Sum_probs=11.2
Q ss_pred hhccCchHHHHHHHHHHHHc
Q 044352 294 GGLTGSIQIGREIHALVCRM 313 (544)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~ 313 (544)
.+..|+.+.+..+++.-...
T Consensus 232 A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCCc
Confidence 34556666666666554443
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.12 E-value=1.9e+02 Score=21.79 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=31.4
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHhHHHHHHHHHHcCCC
Q 044352 204 RMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAEGFVPDLVTWNAMISGFAQSKR 264 (544)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (544)
.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344556555543322 334444445555666677666665444455554445555555554
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.39 E-value=2.1e+02 Score=21.89 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhccCCC---hhhHHHHHHHHhccCC--hhHHHHHHHHHHHcCC
Q 044352 152 NALIDMYSKCGLLCSARRVFHGMFERD---VVSWTSMISGYCNVSK--VDEAVVLFERMKLEGL 210 (544)
Q Consensus 152 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 210 (544)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456666767777777777777775442 1223333334443222 2345555555555443
No 327
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.35 E-value=1.5e+02 Score=20.20 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccCCChhhHHHHHHHHhccCChh
Q 044352 133 KQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFERDVVSWTSMISGYCNVSKVD 196 (544)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (544)
..+++.+.+.|+ .+..-+..+.. .....++|..+++.+..+...+|..++.++...+...
T Consensus 25 ~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345556665553 23333222222 3566778888888888888888888888877766543
No 328
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.26 E-value=2.3e+02 Score=26.97 Aligned_cols=77 Identities=6% Similarity=0.055 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHh
Q 044352 387 TLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV--PMYVTNSMAGAFRNGCN 464 (544)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 464 (544)
++..+.........++.|..+|.++... .|.+...|+.++-.....|+.-+|.-.|-+. ...|-+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3444455555566789999999999874 5667788999998888899888888777654 35677788888777665
Q ss_pred h
Q 044352 465 I 465 (544)
Q Consensus 465 ~ 465 (544)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.59 E-value=4.1e+02 Score=24.99 Aligned_cols=109 Identities=8% Similarity=0.036 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhccC---CChhhHHHHHHHHhccCChhHHHHHHH
Q 044352 127 LDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGMFE---RDVVSWTSMISGYCNVSKVDEAVVLFE 203 (544)
Q Consensus 127 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 203 (544)
.+.+-|.++. .+.|++--...|..-...+...|++++|-++.-..+. ++..+.+.+-..=...|...-.+.+|.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 5555554443 4456666666676667778888888888887776655 556666555554445566666777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 044352 204 RMKLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSR 239 (544)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (544)
.+.+.| ..+..----+++.-...|+.+-..+++.+
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 777666 44443333355555556666555554433
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.36 E-value=72 Score=22.15 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=27.4
Q ss_pred CChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHH
Q 044352 61 GDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEA 97 (544)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 97 (544)
.+.+.|..+++.++...+.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4677888888888877778888888888666664444
No 331
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.85 E-value=68 Score=19.84 Aligned_cols=46 Identities=22% Similarity=-0.004 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 044352 475 MGEEFFEMGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEKNVQKQ 521 (544)
Q Consensus 475 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 521 (544)
..+.+.++.|. ......-..+-...|+.+.|+..+-.|...+..+.
T Consensus 12 ~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 34444455663 22222222233455788888887776665554443
No 332
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.41 E-value=1.1e+02 Score=24.97 Aligned_cols=217 Identities=6% Similarity=-0.075 Sum_probs=0.0
Q ss_pred HHHhhccchhhhhhHHhHHHhhcccchhhHHHHHHHHhhcCCChHHHHHHhccCCCCCchhHH---HHHHHHHhcCCHHH
Q 044352 20 LGKCMKSKALRQGKQVHALLCTNDLNIFSLKSKLVGVYAGCGDVNSARLVFDKIPNPNVFMLN---WMVMASAFTGNFQE 96 (544)
Q Consensus 20 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ 96 (544)
+...+..|+++....+++.-........ .-...+...+..|+.+-+.-+++.-...+...-. ..+...+..|+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~--- 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH--- 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC---
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC---
Q ss_pred HHHHHHHHHhcccccCHHHHH--HHHHHhhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 044352 97 AIGYFSLMREFIYRCNKFTFS--IVLKACVGLLDIKKGKQVHAVATQMGFENDVSVGNALIDMYSKCGLLCSARRVFHGM 174 (544)
Q Consensus 97 A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 174 (544)
.++++.+.+.|..++..... ..+...+..|+.+-+..+++.-.... ..+..-.+.+..+....+..+-..-+.+.-
T Consensus 89 -~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 89 -LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp -HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred -HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Q ss_pred cC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 044352 175 FE---RDVVSWTSMISGYCNVSKVDEAVVLFERMKLEGLEPNQFTYN--AIIASYARRGDSNAAFAFFSRMTAEGFV 246 (544)
Q Consensus 175 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (544)
.. .+...-.+.+...+..|+.+ +++.+.+.|..++..... ..+....+.|+.+-+.-+++.....++.
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred CCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.23 E-value=1.1e+02 Score=23.13 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044352 375 RMLEEGMRANEVTLISVLSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSG 435 (544)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (544)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+. +...+..+...-+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCC
Confidence 3445666665542 22223333334 55677777777654 44455555555555555554
No 334
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.11 E-value=1.1e+02 Score=20.15 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHhccCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044352 67 RLVFDKIP--NPNVFMLNWMVMASAFTGNFQEAIGYFSLM 104 (544)
Q Consensus 67 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 104 (544)
..++++++ ++++.+|+-+...+-+.-=..++..+.+.+
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667777 788889988877665554455555554444
No 335
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.00 E-value=16 Score=26.52 Aligned_cols=70 Identities=11% Similarity=-0.011 Sum_probs=40.2
Q ss_pred hhcCCChHHHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHhhCCCChHHHHH
Q 044352 57 YAGCGDVNSARLVFDKIPNPNVFMLNWMVMASAFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKACVGLLDIKKGKQ 134 (544)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 134 (544)
|.+++++.+++.+..+ -..|.-.|...+.+++.+-|.++++-..+.| +...|...+-.|...=+++-+.+
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344455444433332 2335555666667777777777777777644 55666666666665555554443
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.63 E-value=2.4e+02 Score=21.73 Aligned_cols=57 Identities=5% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCCHhHHHHHHHHHHcCC
Q 044352 206 KLEGLEPNQFTYNAIIASYARRGDSNAAFAFFSRMTAE--GFVPDLVTWNAMISGFAQSK 263 (544)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 263 (544)
.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|-..-+..+...|
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34454444322 22344444444455555555555544 33334444333444454444
No 337
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=23.85 E-value=1.3e+02 Score=18.33 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=20.3
Q ss_pred HhhccchhhhhhHHhHHHhhccc-chhhHHHHHHHHhhcCCChHHHH
Q 044352 22 KCMKSKALRQGKQVHALLCTNDL-NIFSLKSKLVGVYAGCGDVNSAR 67 (544)
Q Consensus 22 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 67 (544)
+-.-....++|..+.+.+...+. ... +....+..+...|++++|+
T Consensus 15 ~~TG~HcH~EA~tIA~~L~~~~~~eE~-v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 15 AGTGHHCHQEAASIADWLAQEECMAEC-VTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSSTTHHH-HHHHHHHHHHHC-------
T ss_pred HHccchHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHccchHhHhh
Confidence 33344466777777666666522 233 3344445556677777764
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.81 E-value=2.5e+02 Score=21.64 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=45.8
Q ss_pred HHHHHHHHHH-HHhcccccCHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhCCCH
Q 044352 94 FQEAIGYFSL-MREFIYRCNKFTFSIVLKACVGLLDIKKGKQVHAVATQM--GFENDVSVGNALIDMYSKCGLL 164 (544)
Q Consensus 94 ~~~A~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 164 (544)
.+.+++-+++ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445544444 45567776554 455566677777888899999999887 6556666655566777777743
No 339
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.27 E-value=3e+02 Score=22.29 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccccCHHH--HHHHHHHhhCCCChHHHHHHHHHHHHcCCCCChhH--HHHHHHHHHh
Q 044352 85 VMASAFTGNFQEAIGYFSLMREFIYRCNKFT--FSIVLKACVGLLDIKKGKQVHAVATQMGFENDVSV--GNALIDMYSK 160 (544)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 160 (544)
+...+..|+.+-...+++.+.+.|..++... -...+...+..|+.+- .+.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3444566777666666665555443333211 1112223334555443 333344443332211 1122334445
Q ss_pred CCCHHHHHHHHhhc
Q 044352 161 CGLLCSARRVFHGM 174 (544)
Q Consensus 161 ~~~~~~A~~~~~~~ 174 (544)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 66666666666554
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.93 E-value=2.7e+02 Score=24.75 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=6.5
Q ss_pred HcCCCHHHHHHHHH
Q 044352 260 AQSKRENEALKLFK 273 (544)
Q Consensus 260 ~~~~~~~~a~~~~~ 273 (544)
+..|+.+-+.-+++
T Consensus 252 ~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 252 VRAAMVLLTKELLQ 265 (364)
T ss_dssp HHTCCHHHHHHHHH
T ss_pred HHhChHHHHHHHHH
Confidence 34455554444443
No 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.79 E-value=4.2e+02 Score=23.83 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCcc---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHH
Q 044352 322 GSALIDMYSKCGSLKDARTLFEITRIKN---VASWNAMIGCYGKHGM--VDSSIELFERMLEEGMRANEVTLI 389 (544)
Q Consensus 322 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~ 389 (544)
...++.-|...++.++|.+.++.+..|. ..+...+..++-+.++ .+....++..+...|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3567778888999999999999998763 2344455555544333 345777777777777555444433
No 342
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.52 E-value=3.7e+02 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHh-cccc
Q 044352 92 GNFQEAIGYFSLMRE-FIYR 110 (544)
Q Consensus 92 ~~~~~A~~~~~~~~~-~~~~ 110 (544)
++.++|++++..+.. .|..
T Consensus 241 ~~~~~a~~~l~~l~~~~g~~ 260 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGMS 260 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 566666666666655 4543
No 343
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.51 E-value=2.3e+02 Score=20.79 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhccCCC---hhhHHHHHHHHhccCC--hhHHHHHHHHHHHcCCC
Q 044352 152 NALIDMYSKCGLLCSARRVFHGMFERD---VVSWTSMISGYCNVSK--VDEAVVLFERMKLEGLE 211 (544)
Q Consensus 152 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 211 (544)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455666667777777777777775442 1223333344444322 24455666666555533
No 344
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.33 E-value=1e+02 Score=20.43 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 044352 493 LSNICAADGEWHEAENLRKIMK 514 (544)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~ 514 (544)
+++=|+..|+|+.|+.+|+.++
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 3444444455555555554443
No 345
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.91 E-value=2.2e+02 Score=26.10 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred Hhhccchhhh---------hhHHhHHHhhc------ccchhhHHHHHHHHhhcCCChHHHHHHhccCC---------CCC
Q 044352 22 KCMKSKALRQ---------GKQVHALLCTN------DLNIFSLKSKLVGVYAGCGDVNSARLVFDKIP---------NPN 77 (544)
Q Consensus 22 ~~~~~g~~~~---------A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~ 77 (544)
++...|++++ +..+|.+++.. ..... -|..++..+.+.+++.+|.+.+.+.. ..|
T Consensus 264 ALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvY-PYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reD 342 (489)
T 4gq4_A 264 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY-PYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRED 342 (489)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTC
T ss_pred hhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCccc-ceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccch
Q ss_pred chhHHHHHHHH--HhcCCHHHHHHHHHHHHhcccccCHHHHHHHHHHh
Q 044352 78 VFMLNWMVMAS--AFTGNFQEAIGYFSLMREFIYRCNKFTFSIVLKAC 123 (544)
Q Consensus 78 ~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 123 (544)
...|.-++... ..-.-...+......-...++-.|+..|..++..|
T Consensus 343 eEiYke~~eIanelip~~lk~~~~~~~~~~~~~~l~dp~c~a~lL~fy 390 (489)
T 4gq4_A 343 EEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPECFAHLLRFY 390 (489)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhcccccccccCCCCcchhhhhcccc
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.80 E-value=2.8e+02 Score=21.46 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHHHhccccc--CHHHHHHHHH-Hh-----hCCCChHHHHHHHHHHHH
Q 044352 90 FTGNFQEAIGYFSLMREFIYRC--NKFTFSIVLK-AC-----VGLLDIKKGKQVHAVATQ 141 (544)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 141 (544)
..|++-+|-++|+..-.....+ ....|..+|+ .. .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876654444 4456666666 22 356777777777776655
No 347
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.61 E-value=6e+02 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCc
Q 044352 326 IDMYSKCGSLKDARTLFEITRIK 348 (544)
Q Consensus 326 ~~~~~~~~~~~~A~~~~~~~~~~ 348 (544)
..-+...|++++|..+|.-..+.
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~ 472 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEY 472 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHhcCH
Confidence 34556678888887777665543
No 348
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.56 E-value=1.8e+02 Score=19.02 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044352 375 RMLEEGMRANEVTLISVLSACSHGG-LVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGR 436 (544)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (544)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+. +...+..+....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 4556676666544 33445555443 455677777777664 445566666666666666553
No 349
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.28 E-value=92 Score=19.29 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 044352 196 DEAVVLFERMKLEGLEPNQFTYNAIIASY 224 (544)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (544)
++|.+.|.+|+...-.++.-||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666665443334444666666555
No 350
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.00 E-value=1.1e+02 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=28.4
Q ss_pred hhhhhHHhHHHhhcccchhh-----HHHHHHHHhhcCCChHHHHHHhccCC
Q 044352 29 LRQGKQVHALLCTNDLNIFS-----LKSKLVGVYAGCGDVNSARLVFDKIP 74 (544)
Q Consensus 29 ~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (544)
++.|+-+++.+.+..+.... +-......|.+.|.+++|.++|+++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 34555555555555111110 33445567889999999999999965
No 351
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.33 E-value=5.3e+02 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCH
Q 044352 262 SKRENEALKLFKGMLVSGIKPNN 284 (544)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~ 284 (544)
..+.+.|+.++.+|++.|..|..
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~ 290 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLY 290 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 45666666666666666654443
No 352
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.07 E-value=3.7e+02 Score=22.83 Aligned_cols=56 Identities=20% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 044352 392 LSACSHGGLVEKGLEIFRSMKERYGVKISKEHYACVVDMLCRSGRMVEAYDLLRQV 447 (544)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (544)
-..|....++.....++..|.......|+......++++|.+.-+-..|.+.+...
T Consensus 180 ~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 180 AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 33455556677777778888776566788888999999999999888888888764
No 353
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.06 E-value=5.8e+02 Score=24.43 Aligned_cols=68 Identities=6% Similarity=-0.045 Sum_probs=40.4
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHH----HHHHHHH-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 044352 449 MYVTNSMAGAFRNGCNIHGRRDLAVT----MGEEFFE-MGLRKPDGFVMLSNICAADGEWHEAENLRKIMKEK 516 (544)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (544)
...|...+..+..-+...|..++-++ .++..++ ..|++......|-..|.+.|++-+|.+++..+...
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 45566666666666666665444332 1222222 33555666677777788888888888888887765
Done!