BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044353
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 218/589 (37%), Gaps = 124/589 (21%)
Query: 16 QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
+ R L LD+S+N + IP LG + L++LD+S NKL+G S T+L +
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 249
Query: 76 RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
N V GP PL L+S L YL ++ + + +IP
Sbjct: 250 NISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENKFTGEIP 283
Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFD----------------SPSVPLITTPSLLGS- 178
+ L++SGN YG VP F S +P+ T + G
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 179 -------------------------IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN 213
DLS+N SG I +CQ N ++ L L N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNN 401
Query: 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA------------------------ 249
F+ IP N L L+L N +G++P S+G+
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 250 XXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS 309
G IP+ N + L + + N L G IP WIG L IL L +
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSN 520
Query: 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369
N F G+ P +L SL LD+ N +GTIP + S + ++ + G
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 370 NEIVEDA--LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
+ A LL +G E + L+ +I+ + G N + L++S+N+
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 428 F------------------------TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXX 463
+G IPD +G +R + LD S+N+L G+IPQ+M
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 464 XXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSNCTEKN 511
G IP Q ++F + F N LCG PL C N
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 219/489 (44%), Gaps = 58/489 (11%)
Query: 12 HLTNQLGRFK---TLRALDLSNNTVNGPIPL--SLGQIANLEYLDLSNNKLNGTVSEIHF 66
H+ + FK +L +LDLS N+++GP+ SLG + L++L++S+N L+
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 67 LNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL-GPRFPLWLQSQK--KLYYL 123
L L L V NS+ WV EL+ + G + + + L +L
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 202
Query: 124 DISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS 183
D+SS S IP F +L++SGN++ G + S L + ++S
Sbjct: 203 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTEL--------KLLNIS 252
Query: 184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW-PRLRMLNLGNNNFTGS 242
+N G I L K++++L L++N F+ +IPD L L+L N+F G+
Sbjct: 253 SNQFVGPIPPLPL------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 243 LPMSIGAXXXXXXXXXXXXXXXGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
+P G+ G +P + + LK LD+ NE G +P + +
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 302 LMILNLRSNKFHGDFPIQLCR--LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS-DP 358
L+ L+L SN F G LC+ +LQ L + N +G IP ++N S + + S +
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 359 NSGIFYASSG---------------DNEIVEDALLVT--KGFLVEYNSILNLVRS----- 396
SG +S G + EI ++ + V + ++++N + + S
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 397 -----IDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
I +S N +GEIP + L+ L L LS+N F+G IP +G RS+ LD + N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 452 LSGQIPQSM 460
+G IP +M
Sbjct: 547 FNGTIPAAM 555
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 40/253 (15%)
Query: 4 LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE 63
L ++ G + +GR + L L LSNN+ +G IP LG +L +LDL+ N NGT+
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 64 IHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE----LRSCHLGPRFPLWLQSQKK 119
+F+ G KI N++ + +++ + CH G L Q +
Sbjct: 554 A---------MFKQSG-----KIAANFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRS 598
Query: 120 LYYLDISSTR----ISAKIPRGFWNSIFQYD----YLNVSGNQIYGGVPKFDSPSVPLIT 171
L+ STR I++++ G + F + +L++S N + G +PK + +
Sbjct: 599 -EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------EIGS 651
Query: 172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRM 231
P L I +L +N +SGSI + + + L LS N IP L
Sbjct: 652 MPYLF--ILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 232 LNLGNNNFTGSLP 244
++L NNN +G +P
Sbjct: 706 IDLSNNNLSGPIP 718
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
L L + G + +++G + L LDLS+N ++G IP ++ + L +DLSNN L+G +
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 62 SEI 64
E+
Sbjct: 718 PEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 218/589 (37%), Gaps = 124/589 (21%)
Query: 16 QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
+ R L LD+S+N + IP LG + L++LD+S NKL+G S T+L +
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 252
Query: 76 RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
N V GP PL L+S L YL ++ + + +IP
Sbjct: 253 NISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENKFTGEIP 286
Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFD----------------SPSVPLITTPSLLGS- 178
+ L++SGN YG VP F S +P+ T + G
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 179 -------------------------IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN 213
DLS+N SG I +CQ N ++ L L N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNN 404
Query: 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA------------------------ 249
F+ IP N L L+L N +G++P S+G+
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 250 XXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS 309
G IP+ N + L + + N L G IP WIG L IL L +
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSN 523
Query: 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369
N F G+ P +L SL LD+ N +GTIP + S + ++ + G
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 370 NEIVEDA--LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
+ A LL +G E + L+ +I+ + G N + L++S+N+
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 428 F------------------------TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXX 463
+G IPD +G +R + LD S+N+L G+IPQ+M
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 464 XXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSNCTEKN 511
G IP Q ++F + F N LCG PL C N
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 219/489 (44%), Gaps = 58/489 (11%)
Query: 12 HLTNQLGRFK---TLRALDLSNNTVNGPIPL--SLGQIANLEYLDLSNNKLNGTVSEIHF 66
H+ + FK +L +LDLS N+++GP+ SLG + L++L++S+N L+
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 67 LNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL-GPRFPLWLQSQK--KLYYL 123
L L L V NS+ WV EL+ + G + + + L +L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 124 DISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS 183
D+SS S IP F +L++SGN++ G + S L + ++S
Sbjct: 206 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTEL--------KLLNIS 255
Query: 184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW-PRLRMLNLGNNNFTGS 242
+N G I L K++++L L++N F+ +IPD L L+L N+F G+
Sbjct: 256 SNQFVGPIPPLPL------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 243 LPMSIGAXXXXXXXXXXXXXXXGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
+P G+ G +P + + LK LD+ NE G +P + +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 302 LMILNLRSNKFHGDFPIQLCR--LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS-DP 358
L+ L+L SN F G LC+ +LQ L + N +G IP ++N S + + S +
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 359 NSGIFYASSG---------------DNEIVEDALLVT--KGFLVEYNSILNLVRS----- 396
SG +S G + EI ++ + V + ++++N + + S
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 397 -----IDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
I +S N +GEIP + L+ L L LS+N F+G IP +G RS+ LD + N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 452 LSGQIPQSM 460
+G IP +M
Sbjct: 550 FNGTIPAAM 558
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 40/253 (15%)
Query: 4 LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE 63
L ++ G + +GR + L L LSNN+ +G IP LG +L +LDL+ N NGT+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 64 IHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE----LRSCHLGPRFPLWLQSQKK 119
+F+ G KI N++ + +++ + CH G L Q +
Sbjct: 557 A---------MFKQSG-----KIAANFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRS 601
Query: 120 LYYLDISSTR----ISAKIPRGFWNSIFQYD----YLNVSGNQIYGGVPKFDSPSVPLIT 171
L+ STR I++++ G + F + +L++S N + G +PK + +
Sbjct: 602 -EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------EIGS 654
Query: 172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRM 231
P L I +L +N +SGSI + + + L LS N IP L
Sbjct: 655 MPYLF--ILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 232 LNLGNNNFTGSLP 244
++L NNN +G +P
Sbjct: 709 IDLSNNNLSGPIP 721
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
L L + G + +++G + L LDLS+N ++G IP ++ + L +DLSNN L+G +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 62 SEI 64
E+
Sbjct: 721 PEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 112/291 (38%), Gaps = 94/291 (32%)
Query: 267 IPTSFRNLSILKALDMGE-NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS 325
IP+S NL L L +G N LVG IP I + ++L L + G P L ++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN-SGIFYASSGDNEIVEDALLVTKGFL 384
L LD +YN+LSGT+P I SS PN GI + + + + D+
Sbjct: 127 LVTLDFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDS-------- 168
Query: 385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNL----------------------------- 415
Y S L S+ IS+N +G+IP NL
Sbjct: 169 --YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 416 -----------------QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 458
+ L L+L +N G +P + ++ + SL+ S N L G+IPQ
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 459 SMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPLSNCT 508
LQ F S++A N LCG+PL CT
Sbjct: 287 ------------------------GGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 106 LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165
+GP P + +L+YL I+ T +S IP F + I L+ S N + G +P P
Sbjct: 90 VGP-IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLP----P 143
Query: 166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
S+ + P+L+G FD N +SG+I +FSK + +S+N + IP + N
Sbjct: 144 SIS--SLPNLVGITFD--GNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 226 WPRLRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGEN 285
L ++L N G + G+ A D+G+
Sbjct: 197 L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL---------------AFDLGKV 240
Query: 286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
L N L L+LR+N+ +G P L +L L L+V++N+L G IP+
Sbjct: 241 GLSKN-----------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 109/291 (37%), Gaps = 65/291 (22%)
Query: 31 NTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNW 90
N + GPIP ++ ++ L YL +++ ++G + + FL+ + LV +L F N
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTLV------TLDFSYN--- 135
Query: 91 VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNV 150
L P + S L + RIS IP + + + + +
Sbjct: 136 --------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 151 SGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 210
S N++ G +P T +L + DLS N L G L KN + + L
Sbjct: 182 SRNRLTGKIPP---------TFANLNLAFVDLSRNMLEGDASVLFGS----DKNTQKIHL 228
Query: 211 SKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTS 270
+KN + D+ ++ L L+L NN G+LP +
Sbjct: 229 AKNSLAFDLGKVGLSK-NLNGLDLRNNRIYGTLPQGL----------------------- 264
Query: 271 FRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
L L +L++ N L G IP G R + +NK P+ C
Sbjct: 265 -TQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 16 QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE 63
++G K L LDL NN + G +P L Q+ L L++S N L G + +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH 78
R L +L LS+N +N + + NL YLDLS+N L+ T+ E F +L L V +
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 79 GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWL----QSQKKLYYLDISSTRISAKI 134
N +V + QL L L + RFP+ L KL LD+SS ++ K+
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KL 178
Query: 135 P 135
P
Sbjct: 179 P 179
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 47/226 (20%)
Query: 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN--GTVSEIHFLNLT-QLLVF 75
+ K+L+ L ++N G S + +LE+LDLS N L+ G S+ F ++ + L
Sbjct: 347 KLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404
Query: 76 RAHGNSLVFKINPNWVPPFQLAFLELRSCHLG--PRFPLWLQSQKKLYYLDISSTRISAK 133
+G V ++ N++ QL L+ + +L F ++L S + L YLDIS T
Sbjct: 405 SFNG---VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVA 460
Query: 134 IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFH 193
G +N + + L ++GN F +P I T
Sbjct: 461 F-NGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTE-------------------- 492
Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
+N+ FL LS+ + P + + L++LN+ +NNF
Sbjct: 493 --------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 397 IDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456
+D+S+ P +L LQ LN+SHN F + S++ LD+S N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 457 PQSM 460
Q +
Sbjct: 559 KQEL 562
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ-LAFLELR 102
+ NL YLD+S+ + I F L+ L V + GNS P+ + L FL+L
Sbjct: 444 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISA--KIPRGFWNSIFQYDY 147
C L P S L L++S + P NS+ DY
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN--GTVSEIHFLNLTQLLVFR 76
+ K+L+ L ++N G S + +LE+LDLS N L+ G S+ F T L
Sbjct: 323 KLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLD 379
Query: 77 AHGNSLVFKINPNWVPPFQLAFLELRSCHLG--PRFPLWLQSQKKLYYLDISSTRISAKI 134
N V ++ N++ QL L+ + +L F ++L S + L YLDIS T
Sbjct: 380 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAF 437
Query: 135 PRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHL 194
G +N + + L ++GN F +P I T
Sbjct: 438 -NGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTE--------------------- 468
Query: 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
+N+ FL LS+ + P + + L++LN+ +NNF
Sbjct: 469 -------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 397 IDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456
+D+S+ P +L LQ LN+SHN F + S++ LD+S N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 457 PQSM 460
Q +
Sbjct: 535 KQEL 538
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ-LAFLELR 102
+ NL YLD+S+ + I F L+ L V + GNS P+ + L FL+L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISA--KIPRGFWNSIFQYDY 147
C L P S L L++S + P NS+ DY
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 80/347 (23%)
Query: 40 SLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFL 99
+ ++ NL +LDL+ ++N + E F + QL GN L+F + P L L
Sbjct: 49 TFSRLMNLTFLDLTRCQINW-IHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHL 107
Query: 100 ELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA-KIPRGF----------WNSIFQYDY- 147
L + + + + + L L + S IS+ K P+ F N+ Y
Sbjct: 108 FLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISR 167
Query: 148 -------------LNVSGNQIYG-GVPKFDS-----------PSVPLI-------TTPSL 175
LN +GN + G + FDS P++ +I TT SL
Sbjct: 168 EDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSL 227
Query: 176 -LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL 234
LG+ D+ + +S ++ +C+ ++E L L ++ FS+ + + +L+ L+L
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCE-----MSVESLNLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 235 GNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTW 294
+ G +P+ + L++LK L + N +
Sbjct: 283 TATHLKG-------------------------LPSGMKGLNLLKKLVLSVNHF-DQLCQI 316
Query: 295 IGETFSRLMILNLRSN--KFHGDFPIQLCRLGSLQILDVAYNSLSGT 339
F L L +R N K H L +LG+LQ LD+++N + +
Sbjct: 317 SAANFPSLTHLYIRGNVKKLHLGVGC-LEKLGNLQTLDLSHNDIEAS 362
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 394 VRSIDISKNNFSGE--IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
++++D+S N+ +++ NL LQ+LNLSHN G +E LD + +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 452 LSGQIPQS 459
L PQS
Sbjct: 409 LHINAPQS 416
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKL 57
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ-LAFLELR 102
+ NL YLD+S+ + I F L+ L V + GNS P+ + L FL+L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKF 162
C L P S L L+++S ++ + +P G ++ + + + N P+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
Query: 163 D 163
D
Sbjct: 538 D 538
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN--GTVSEIHFLNLTQLLVFR 76
+ K+L+ L ++N G S + +LE+LDLS N L+ G S+ F T L
Sbjct: 323 KLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLD 379
Query: 77 AHGNSLVFKINPNWVPPFQLAFLELRSCHLG--PRFPLWLQSQKKLYYLDISSTRISAKI 134
N V ++ N++ QL L+ + +L F ++L S + L YLDIS T
Sbjct: 380 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAF 437
Query: 135 PRGFWNSIFQYDYLNVSGN 153
G +N + + L ++GN
Sbjct: 438 -NGIFNGLSSLEVLKMAGN 455
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 17 LGRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNG 59
+G KTL+ L++++N + +P + NLE+LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 47 LEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE--LRSC 104
++ LDL+ LNG S I +N + LV A+ + +IN P + +++ +R
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL 338
Query: 105 HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW-NSIFQYDYLNVSGNQIYG 157
LG R L+ + L LD+S + I A ++ YLN+S N+ G
Sbjct: 339 DLGTR---CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 41/233 (17%)
Query: 20 FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN-------GTVSE--IHFLNLT 70
K L L L NN ++ P + + LE L LS N+L T+ E +H +T
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 71 QLL--VFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
++ VF +V ++ N P + + +E + Q KKL Y+ I+ T
Sbjct: 135 KVRKSVFNGLNQMIVVELGTN---PLKSSGIENGA----------FQGMKKLSYIRIADT 181
Query: 129 RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS 188
I+ IP+G S+ + L++ GN+I K D+ S+ + + LG F+ + +
Sbjct: 182 NITT-IPQGLPPSLTE---LHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
GS+ + + ++ L L+ N + +P + ++++ L NNN +
Sbjct: 234 GSLAN--------TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 41/233 (17%)
Query: 20 FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN-------GTVSE--IHFLNLT 70
K L L L NN ++ P + + LE L LS N+L T+ E +H +T
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 71 QLL--VFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
++ VF +V ++ N P + + +E + Q KKL Y+ I+ T
Sbjct: 135 KVRKSVFNGLNQMIVVELGTN---PLKSSGIENGA----------FQGMKKLSYIRIADT 181
Query: 129 RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS 188
I+ IP+G S+ + L++ GN+I K D+ S+ + + LG F+ + +
Sbjct: 182 NITT-IPQGLPPSLTE---LHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
GS+ + + ++ L L+ N + +P + ++++ L NNN +
Sbjct: 234 GSLAN--------TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 107/465 (23%), Positives = 176/465 (37%), Gaps = 93/465 (20%)
Query: 18 GRFKTLRAL---DLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNGTVS-EIHFLNLTQL 72
G F+ L+AL DLS N + + S G++ +L+ +D S+N++ E+ L L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176
Query: 73 LVFRAHGNSLVFKINPNW---VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR 129
F NSL +++ +W + PF+ LE+ LD+S
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI---------------------LDVSGNG 215
Query: 130 ISAKIPRGFWNSIFQYDYLN-VSGNQIYGGVPKFDSPSVPLITTPSLLGSI----FDLSN 184
+ I F N+I + + + + I G F + P T + L DLS+
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 185 NALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP 244
G +F L + K+++ L L+ N ++ + + L++LNL N G L
Sbjct: 276 ----GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELY 330
Query: 245 MSIGAXXXXXXXXXXXXXXXGIIP-TSFRNLSILKALDMGENEL-----VGNIPTWI--G 296
S II +F+ L L+ LD+ +N L + +IP G
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 297 ETFSRLMILNLRSNKFHG--------DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
L +NL +N H D L R+ LQIL +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL----------------- 433
Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
N F + SGD E+ L + FL E ++L L ++ + F G
Sbjct: 434 ----------NQNRFSSCSGDQTPSENPSL-EQLFLGE--NMLQLAWETELCWDVFEG-- 478
Query: 409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453
L LQ L L+HN P + ++ L ++N+L+
Sbjct: 479 ------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 447
V+ +D+ NN IP +VT+LQ LQ LN++ N +PD GV + SL +
Sbjct: 452 VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD--GVFDRLTSLQY 501
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 407 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 437
E+P E+ NL L+ L+LSHN T +P +G
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ-LAFLELR 102
+ NL YLD+S+ + I F L+ L V + GNS P+ + L FL+L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISA--KIPRGFWNSIFQYDY 147
C L P S L L++S + P NS+ DY
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 397 IDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456
+D+S+ P +L LQ LN+SHN F + S++ LD+S N +
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 457 PQSM 460
Q +
Sbjct: 240 KQEL 243
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 300 SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
S + +LNL N+ P R L ILD +NS+S P
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 34/155 (21%)
Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDI---PDCWMNWPRLRMLNLGNNNFTGSLPM 245
+F + C K++EFL LS+N E+ C WP L+ L L N+
Sbjct: 346 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS---- 401
Query: 246 SIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENEL--VGNIPTWIGETFSRLM 303
G I + +NL+ +LD+ N + + W ++
Sbjct: 402 ---------------MQKTGEILLTLKNLT---SLDISRNTFHPMPDSCQWP----EKMR 439
Query: 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG 338
LNL S G ++ C +L++LDV+ N+L
Sbjct: 440 FLNLSST---GIRVVKTCIPQTLEVLDVSNNNLDS 471
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
R+G + V + T+P+ ++NF A+AT + G Y +S + +++D ++
Sbjct: 13 RIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDFMI 64
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
R+G + V + T+P+ ++NF A+AT + G Y +S + +++D ++
Sbjct: 23 RIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDFMI 74
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 34/153 (22%)
Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDI---PDCWMNWPRLRMLNLGNNNFTGSLPM 245
+F + C K++EFL LS+N E+ C WP L+ L L N+
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS---- 375
Query: 246 SIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENEL--VGNIPTWIGETFSRLM 303
G I + +NL+ +LD+ N + + W ++
Sbjct: 376 ---------------MQKTGEILLTLKNLT---SLDISRNTFHPMPDSCQWP----EKMR 413
Query: 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL 336
LNL S G ++ C +L++LDV+ N+L
Sbjct: 414 FLNLSST---GIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRA 77
GR L L+L N + G P + ++++ L L NK+ +S FL L QL
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109
Query: 78 HGNSLVFKINPNWVPPFQLAFLELRS------CHLGPRFPLWLQSQ 117
+ N + + ++ L L L S CHL F WL+ +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKK 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,983,422
Number of Sequences: 62578
Number of extensions: 619939
Number of successful extensions: 1472
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 220
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)