Query 044353
Match_columns 596
No_of_seqs 382 out of 4189
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-54 3.4E-59 495.4 35.1 494 1-503 97-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.9E-52 1.9E-56 472.8 36.2 489 1-499 73-583 (968)
3 KOG4194 Membrane glycoprotein 100.0 4E-41 8.8E-46 328.0 5.9 396 2-503 83-480 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-40 4.2E-45 323.3 7.3 398 24-505 55-458 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5.6E-38 1.2E-42 293.4 -15.2 446 2-500 50-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.4E-34 3.1E-39 284.4 -4.6 379 2-472 12-394 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 6.5E-35 1.4E-39 272.9 -14.9 421 1-477 72-541 (565)
8 KOG0444 Cytoskeletal regulator 100.0 5.5E-33 1.2E-37 273.3 -4.1 373 17-481 3-379 (1255)
9 KOG0618 Serine/threonine phosp 100.0 3.3E-32 7.1E-37 279.8 -6.6 246 203-475 241-487 (1081)
10 KOG0618 Serine/threonine phosp 99.9 6.9E-30 1.5E-34 262.8 -5.2 432 1-474 49-510 (1081)
11 KOG4237 Extracellular matrix p 99.9 5.2E-28 1.1E-32 226.6 -6.5 407 23-474 69-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.8E-22 1E-26 228.2 26.9 135 14-154 551-692 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.7E-26 1.7E-30 212.1 -5.1 300 202-503 66-385 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.6E-26 224.9 26.1 338 64-475 552-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.3E-25 199.5 16.6 128 203-348 342-469 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.8E-20 6.1E-25 198.4 17.1 202 203-482 262-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 186.5 12.4 204 204-477 221-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 9.1E-18 2E-22 180.6 14.1 247 21-337 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-19 6.3E-24 178.7 -0.4 85 392-476 221-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-19 1.2E-23 176.7 -1.1 277 2-336 3-319 (319)
21 KOG0617 Ras suppressor protein 99.6 3.9E-18 8.5E-23 142.4 -4.3 90 394-485 104-194 (264)
22 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 139.5 -4.9 178 251-479 33-214 (264)
23 PLN03150 hypothetical protein; 99.5 1.3E-14 2.8E-19 155.9 9.9 116 393-508 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.5E-18 136.7 -4.1 177 249-479 73-249 (722)
25 PLN03150 hypothetical protein; 99.3 2.1E-11 4.5E-16 131.3 11.0 114 325-482 419-533 (623)
26 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4.1E-17 118.3 1.6 222 201-480 180-415 (490)
27 KOG0532 Leucine-rich repeat (L 99.2 4.7E-13 1E-17 132.5 -3.5 213 208-475 55-271 (722)
28 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.3E-16 124.0 7.0 123 207-335 97-220 (394)
29 KOG3207 Beta-tubulin folding c 99.2 4.9E-12 1.1E-16 121.6 0.5 210 225-479 119-341 (505)
30 COG4886 Leucine-rich repeat (L 99.1 6.1E-11 1.3E-15 122.1 7.5 198 231-482 97-295 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 2.7E-11 5.8E-16 106.6 4.0 131 16-151 14-148 (175)
32 KOG1909 Ran GTPase-activating 99.1 2.8E-12 6.1E-17 120.0 -2.3 135 202-336 156-310 (382)
33 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.5E-16 117.4 1.4 209 248-499 118-338 (505)
34 KOG1909 Ran GTPase-activating 99.1 6.6E-12 1.4E-16 117.6 -2.3 249 41-313 26-311 (382)
35 KOG1259 Nischarin, modulator o 99.1 3.4E-11 7.4E-16 110.2 1.7 224 226-503 181-415 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 6.1E-10 1.3E-14 98.1 6.7 122 228-355 20-147 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 6.7E-10 1.4E-14 80.3 3.2 59 417-475 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.4E-14 78.4 3.8 61 392-452 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 114.9 -0.9 128 202-337 71-199 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 5.4E-09 1.2E-13 115.2 5.4 132 18-154 520-653 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.8 4E-09 8.8E-14 116.2 3.5 108 20-129 544-653 (889)
42 KOG0531 Protein phosphatase 1, 98.7 3.2E-09 7E-14 109.5 1.3 128 20-155 71-198 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 1.5E-09 3.3E-14 110.9 -4.3 107 391-503 186-295 (1096)
44 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3.1E-14 111.1 -7.1 180 244-479 102-294 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.3E-09 7.2E-14 97.4 -6.3 179 71-285 186-373 (419)
46 KOG2982 Uncharacterized conser 98.3 1.7E-07 3.6E-12 86.4 0.8 86 19-105 69-157 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 3.1E-08 6.7E-13 91.1 -4.6 178 22-237 186-373 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.2 9.3E-08 2E-12 86.9 -2.1 41 90-130 88-132 (388)
49 KOG2982 Uncharacterized conser 98.2 3.2E-07 6.9E-12 84.6 -0.6 86 69-154 70-157 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 2.3E-07 5.1E-12 84.4 -2.4 139 16-155 25-197 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 2.4E-07 5.1E-12 75.5 -3.2 58 394-453 79-136 (177)
52 KOG4579 Leucine-rich repeat (L 98.0 7.2E-07 1.6E-11 72.8 -1.9 59 277-337 55-113 (177)
53 PF12799 LRR_4: Leucine Rich r 97.9 7.3E-06 1.6E-10 54.0 2.7 35 418-453 3-37 (44)
54 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 53.3 2.9 37 21-58 1-37 (44)
55 KOG1644 U2-associated snRNP A' 97.9 3.4E-05 7.3E-10 67.6 6.2 83 46-131 43-126 (233)
56 PF13306 LRR_5: Leucine rich r 97.8 6.9E-05 1.5E-09 63.5 8.0 124 14-145 5-128 (129)
57 KOG1644 U2-associated snRNP A' 97.7 4.3E-05 9.4E-10 67.0 4.5 125 2-130 24-152 (233)
58 KOG3665 ZYG-1-like serine/thre 97.7 9.8E-06 2.1E-10 87.5 -0.1 144 2-148 127-280 (699)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00016 3.4E-09 61.3 7.0 106 222-333 7-112 (129)
60 PRK15386 type III secretion pr 97.6 0.00014 3.1E-09 72.4 7.6 76 247-336 48-124 (426)
61 PRK15386 type III secretion pr 97.6 0.00022 4.8E-09 71.1 8.5 54 202-261 51-104 (426)
62 KOG3665 ZYG-1-like serine/thre 97.4 3.8E-05 8.2E-10 83.0 0.5 88 202-291 172-266 (699)
63 KOG4341 F-box protein containi 97.2 1.4E-05 3.1E-10 77.5 -5.0 279 22-335 139-437 (483)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00017 3.7E-09 66.1 2.1 106 44-152 42-152 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.8E-09 64.1 3.0 111 13-126 35-151 (260)
66 KOG4341 F-box protein containi 97.0 3.6E-05 7.8E-10 74.8 -4.1 281 16-332 159-460 (483)
67 KOG2123 Uncharacterized conser 96.5 0.00012 2.6E-09 67.3 -5.0 101 202-306 18-123 (388)
68 KOG1947 Leucine rich repeat pr 96.1 0.0013 2.9E-08 69.7 -0.4 111 44-154 187-306 (482)
69 KOG2123 Uncharacterized conser 96.0 0.00057 1.2E-08 63.1 -3.0 82 252-339 20-103 (388)
70 KOG1947 Leucine rich repeat pr 95.5 0.0018 3.9E-08 68.6 -2.2 110 202-311 187-306 (482)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.014 2.9E-07 31.9 1.0 16 47-63 2-17 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.7E-07 32.0 0.8 12 442-453 2-13 (22)
73 KOG4308 LRR-containing protein 94.5 0.00031 6.7E-09 72.8 -11.1 190 96-313 89-303 (478)
74 KOG4308 LRR-containing protein 93.5 0.00052 1.1E-08 71.1 -11.7 40 178-217 265-304 (478)
75 PF13504 LRR_7: Leucine rich r 92.2 0.094 2E-06 26.4 1.3 12 46-57 2-13 (17)
76 KOG0473 Leucine-rich repeat pr 92.1 0.0063 1.4E-07 54.9 -5.2 84 391-477 41-124 (326)
77 smart00369 LRR_TYP Leucine-ric 91.7 0.16 3.6E-06 28.8 2.2 22 45-67 2-23 (26)
78 smart00370 LRR Leucine-rich re 91.7 0.16 3.6E-06 28.8 2.2 22 45-67 2-23 (26)
79 smart00370 LRR Leucine-rich re 90.8 0.2 4.3E-06 28.5 1.9 21 440-460 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 90.8 0.2 4.3E-06 28.5 1.9 21 440-460 2-22 (26)
81 KOG3864 Uncharacterized conser 87.8 0.083 1.8E-06 47.0 -1.8 81 252-332 102-184 (221)
82 KOG3864 Uncharacterized conser 86.3 0.085 1.9E-06 46.9 -2.5 84 393-476 102-188 (221)
83 PF08693 SKG6: Transmembrane a 86.3 0.62 1.3E-05 29.4 2.0 29 532-560 10-38 (40)
84 PF01102 Glycophorin_A: Glycop 83.3 0.65 1.4E-05 38.0 1.5 31 533-563 63-93 (122)
85 TIGR00864 PCC polycystin catio 81.8 0.71 1.5E-05 56.8 1.7 39 446-484 1-39 (2740)
86 KOG0473 Leucine-rich repeat pr 81.0 0.045 9.8E-07 49.6 -6.4 87 410-498 36-122 (326)
87 KOG3763 mRNA export factor TAP 80.8 0.75 1.6E-05 47.4 1.2 36 415-450 217-254 (585)
88 PF13516 LRR_6: Leucine Rich r 80.7 0.59 1.3E-05 25.9 0.3 15 118-132 2-16 (24)
89 PF15102 TMEM154: TMEM154 prot 79.9 1.6 3.5E-05 36.6 2.7 18 547-564 72-89 (146)
90 smart00365 LRR_SD22 Leucine-ri 77.9 2.1 4.5E-05 24.4 1.9 14 45-58 2-15 (26)
91 KOG4242 Predicted myosin-I-bin 75.0 9.7 0.00021 38.8 6.9 137 204-341 215-371 (553)
92 PTZ00382 Variant-specific surf 70.9 4.7 0.0001 31.7 3.0 25 532-556 64-88 (96)
93 smart00364 LRR_BAC Leucine-ric 66.8 4.1 9E-05 23.1 1.4 13 441-453 3-15 (26)
94 smart00368 LRR_RI Leucine rich 66.5 3.7 8E-05 23.8 1.2 15 118-132 2-16 (28)
95 PF04478 Mid2: Mid2 like cell 66.4 2.5 5.4E-05 35.8 0.7 13 535-547 50-62 (154)
96 PF08374 Protocadherin: Protoc 65.1 6.8 0.00015 35.2 3.1 26 532-557 36-61 (221)
97 PF02439 Adeno_E3_CR2: Adenovi 63.9 5.7 0.00012 24.7 1.7 10 538-547 7-16 (38)
98 PF02009 Rifin_STEVOR: Rifin/s 59.8 5 0.00011 38.8 1.5 14 547-560 270-283 (299)
99 KOG3763 mRNA export factor TAP 56.8 6.2 0.00013 41.0 1.7 12 277-288 272-283 (585)
100 KOG4242 Predicted myosin-I-bin 51.4 30 0.00064 35.5 5.3 60 228-287 414-480 (553)
101 PF11770 GAPT: GRB2-binding ad 49.6 5 0.00011 33.6 -0.2 13 547-559 23-35 (158)
102 PF01299 Lamp: Lysosome-associ 47.6 15 0.00033 36.1 2.8 21 536-556 272-292 (306)
103 PTZ00046 rifin; Provisional 46.5 12 0.00026 36.9 1.7 30 536-565 318-347 (358)
104 TIGR01477 RIFIN variant surfac 46.2 12 0.00026 36.7 1.7 30 536-565 313-342 (353)
105 TIGR01478 STEVOR variant surfa 45.4 13 0.00029 35.0 1.8 12 546-557 270-281 (295)
106 PTZ00370 STEVOR; Provisional 45.1 14 0.00031 34.9 1.9 8 548-555 268-275 (296)
107 PF12606 RELT: Tumour necrosis 44.2 16 0.00036 24.5 1.6 22 549-570 14-35 (50)
108 PF12877 DUF3827: Domain of un 43.1 29 0.00063 36.9 4.0 29 527-555 263-291 (684)
109 PF14575 EphA2_TM: Ephrin type 41.6 16 0.00034 27.2 1.4 12 539-550 6-17 (75)
110 smart00367 LRR_CC Leucine-rich 38.8 21 0.00046 20.0 1.4 13 44-56 1-13 (26)
111 PF04971 Lysis_S: Lysis protei 37.5 29 0.00062 25.0 2.0 28 534-561 33-60 (68)
112 PF15050 SCIMP: SCIMP protein 34.9 21 0.00046 28.7 1.2 8 558-565 31-38 (133)
113 PF08114 PMP1_2: ATPase proteo 34.4 32 0.0007 21.7 1.7 10 555-564 28-37 (43)
114 PF07204 Orthoreo_P10: Orthore 34.1 26 0.00057 26.8 1.5 28 533-561 41-69 (98)
115 PHA03265 envelope glycoprotein 34.1 27 0.00059 34.0 2.0 23 543-565 357-379 (402)
116 PF12191 stn_TNFRSF12A: Tumour 34.0 19 0.00041 29.4 0.8 8 552-559 97-104 (129)
117 PF00558 Vpu: Vpu protein; In 32.8 28 0.00061 26.2 1.5 12 548-559 20-31 (81)
118 PF02480 Herpes_gE: Alphaherpe 32.2 15 0.00033 38.0 0.0 15 570-584 390-404 (439)
119 PF01034 Syndecan: Syndecan do 32.2 16 0.00034 25.9 0.1 7 555-561 33-39 (64)
120 PF01102 Glycophorin_A: Glycop 31.6 30 0.00065 28.5 1.6 35 530-565 64-98 (122)
121 PF05568 ASFV_J13L: African sw 28.6 41 0.00089 28.0 1.9 20 538-557 33-52 (189)
122 PF01708 Gemini_mov: Geminivir 27.5 24 0.00051 26.9 0.3 39 546-584 43-82 (91)
123 PF14316 DUF4381: Domain of un 27.2 47 0.001 28.5 2.2 16 554-569 40-55 (146)
124 PF06365 CD34_antigen: CD34/Po 26.8 99 0.0021 28.1 4.2 9 534-542 101-109 (202)
125 PF11770 GAPT: GRB2-binding ad 26.2 39 0.00084 28.5 1.4 29 537-565 10-38 (158)
126 PRK14762 membrane protein; Pro 26.1 56 0.0012 18.1 1.5 18 537-554 6-23 (27)
127 PF12768 Rax2: Cortical protei 26.0 34 0.00075 33.0 1.3 27 540-566 237-263 (281)
128 TIGR00864 PCC polycystin catio 25.1 44 0.00096 42.3 2.2 32 27-58 1-32 (2740)
129 PTZ00370 STEVOR; Provisional 24.9 43 0.00094 31.9 1.6 27 535-561 258-284 (296)
130 PF14610 DUF4448: Protein of u 24.8 39 0.00085 30.5 1.3 24 534-557 157-180 (189)
131 PF05454 DAG1: Dystroglycan (D 24.7 25 0.00053 33.9 0.0 20 549-568 161-180 (290)
132 PF02009 Rifin_STEVOR: Rifin/s 24.7 57 0.0012 31.8 2.4 33 536-568 255-287 (299)
133 PF13908 Shisa: Wnt and FGF in 24.4 1E+02 0.0022 27.4 3.9 6 469-474 9-14 (179)
134 PF06305 DUF1049: Protein of u 24.3 43 0.00094 24.1 1.3 6 542-547 27-32 (68)
135 TIGR01478 STEVOR variant surfa 24.0 45 0.00097 31.7 1.5 27 535-561 262-288 (295)
136 PRK00523 hypothetical protein; 24.0 54 0.0012 23.9 1.6 18 547-564 16-33 (72)
137 PRK01844 hypothetical protein; 22.0 65 0.0014 23.6 1.7 15 550-564 18-32 (72)
138 PF04478 Mid2: Mid2 like cell 21.5 49 0.0011 28.3 1.1 20 531-550 50-69 (154)
139 PF07213 DAP10: DAP10 membrane 20.4 57 0.0012 24.3 1.2 32 533-564 33-64 (79)
140 PF15179 Myc_target_1: Myc tar 20.3 76 0.0016 27.9 2.1 25 535-559 25-49 (197)
141 PHA02662 ORF131 putative membr 20.1 58 0.0013 29.6 1.4 10 465-474 128-137 (226)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-54 Score=495.43 Aligned_cols=494 Identities=33% Similarity=0.473 Sum_probs=346.2
Q ss_pred CeeecCCCccccCCcccc-CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353 1 SLFLRRSQFYGHLTNQLG-RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~-~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 79 (596)
+|+|++|++++.+|..+. .+++|++|++++|.+++.+|. ..+++|++|+|++|.+.+.+|. .+.++++|++|++++
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGG 173 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECcc
Confidence 378999999888887654 889999999999988876664 4578888888888888777776 788888888888888
Q ss_pred CeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353 80 NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (596)
|.+.+..+..+.++++|++|++++|.+.+..|..++++++|+.|++++|.+++.+|..+. .+++|++|++++|.+++..
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceecccc
Confidence 888877888888888888888888888888888888888888888888888877777764 4688888888888887766
Q ss_pred CCCCCCCCCc--cc---------cC----CCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc
Q 044353 160 PKFDSPSVPL--IT---------TP----SLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223 (596)
Q Consensus 160 ~~~~~~~~~~--~~---------~~----~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 223 (596)
|..+...... +. +| .+.. +.+++++|.+.+..+..+ ..+++|+.|++++|.+.+..|..+
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV----IQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH----cCCCCCcEEECCCCccCCcCChhH
Confidence 6554432111 00 01 0111 444555555444333222 224555555555555555555555
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 303 (596)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~ 407 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLR 407 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555544 456666
Q ss_pred EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEE---e
Q 044353 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV---T 380 (596)
Q Consensus 304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 380 (596)
.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.++++.+......+............+. .
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 6666666666666666666666666666666666666666666666666666655432111111101111111111 1
Q ss_pred ccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccc
Q 044353 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM 460 (596)
Q Consensus 381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 460 (596)
.+..+..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 22333445568889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353 461 SNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 461 ~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
..+++|+.|++++|++.+.+|...++.++....+.||+ +|+.+
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999888899888999999 89754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.9e-52 Score=472.79 Aligned_cols=489 Identities=30% Similarity=0.430 Sum_probs=377.4
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 79 (596)
.|||++|.+++.++..+..+++|+.|+|++|++++.+|..+. .+++|++|+|++|++++.+|. ..+++|++|++++
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~ 149 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSN 149 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcC
Confidence 379999999999999999999999999999999988887654 899999999999999877775 4688999999999
Q ss_pred CeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353 80 NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (596)
|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++.+|..+.. +++|++|++++|++++..
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcC
Confidence 9999888999999999999999999999999999999999999999999999888887754 799999999999998877
Q ss_pred CCCCCCCCCc--cc---------cC----CCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc
Q 044353 160 PKFDSPSVPL--IT---------TP----SLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223 (596)
Q Consensus 160 ~~~~~~~~~~--~~---------~~----~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 223 (596)
|..+...... ++ +| .+.. +.+++++|.+.+..+.. +..+++|++|++++|.+.+..|..+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh----HhhccCcCEEECcCCeeccCCChhH
Confidence 7655443211 11 11 1112 45555555555443332 2235666666666666666666666
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 303 (596)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.++. .+++|+
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~ 383 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLF 383 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCC
Confidence 6666667777766666666666666667777777777777666666666777777777777777666666665 466777
Q ss_pred EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC-CCCCceeeeeEEEec-
Q 044353 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS-SGDNEIVEDALLVTK- 381 (596)
Q Consensus 304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~- 381 (596)
.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.++++.+........ ...........+...
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 777777777777777777778888888888888877888888888888888877654322211 001111111111111
Q ss_pred --cceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcc
Q 044353 382 --GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 459 (596)
Q Consensus 382 --~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 459 (596)
+..+.. ...++|+.|++++|.+++..|..+..+++|++|+|++|++.+.+|+.+..+++|++|+|++|.+++.+|..
T Consensus 464 ~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 464 FFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 111111 13478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEecccccCccCCCCC-CccCccccccccCCCC
Q 044353 460 MSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGNDL 499 (596)
Q Consensus 460 ~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~l 499 (596)
+..+++|+.|++++|++++.+|.. ..+..++.+++.+|++
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 999999999999999999988865 5677889999999984
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-41 Score=328.04 Aligned_cols=396 Identities=21% Similarity=0.218 Sum_probs=285.3
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
||+++|++...-+..|.++++|+.+++..|.++ .+|..-....+|+.|+|..|.|+ .+....+.-++.|++||||.|.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhch
Confidence 677788877777777778888888888887777 45655555666888888888776 6665577777778888888887
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
++......|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++ .+|...|+.++.|+.|++..|+|.-..
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive-- 237 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE-- 237 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh--
Confidence 77777777777777888888888877777777777777778888888877 567666676777777777777762100
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (596)
...+..+++|+.|.|..|.+.....++|..+.++++|+|+.|++..
T Consensus 238 ----------------------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 238 ----------------------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ----------------------------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 0112235677777777777776666777777777777777777776
Q ss_pred cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
.-..++.++++|+.|+++.|.|..+.+.....+++|++|+|++|.++ ++++..+..+..|++|.|++|+++.....+|.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 66667777777777777777777777777777777777777777777 66666666677777777777777765566677
Q ss_pred CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC
Q 044353 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK 401 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 401 (596)
.+++|++|||+.|.++..+-+
T Consensus 363 ~lssL~~LdLr~N~ls~~IED----------------------------------------------------------- 383 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIED----------------------------------------------------------- 383 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEec-----------------------------------------------------------
Confidence 777777777777766632221
Q ss_pred CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCC
Q 044353 402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 481 (596)
Q Consensus 402 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 481 (596)
-...|.++++|+.|+|.+|++..+...+|.+++.|++|||.+|.|..+.|.+|..| .|+.|-+..-.+.|.|.
T Consensus 384 ------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 384 ------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred ------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 22356778888888888888886666788888888888888888888888888888 78888888777878776
Q ss_pred CCCccCccccccccCCC--CCCCC
Q 044353 482 SSTQLQSFGASSFAGND--LCGAP 503 (596)
Q Consensus 482 ~~~~~~~l~~~~~~~n~--lc~~~ 503 (596)
-.+..+.+....+..-- .|+.|
T Consensus 457 l~Wl~qWl~~~~lq~sv~a~CayP 480 (873)
T KOG4194|consen 457 LKWLAQWLYRRKLQSSVIAKCAYP 480 (873)
T ss_pred HHHHHHHHHhcccccceeeeccCC
Confidence 65555555444443222 46655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-40 Score=323.29 Aligned_cols=398 Identities=23% Similarity=0.261 Sum_probs=327.0
Q ss_pred CEEECcCCcccccCCccCcCC--CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353 24 RALDLSNNTVNGPIPLSLGQI--ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL 101 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 101 (596)
+.||.+++.+..+....+.++ +.-+.||+++|++. .+....|.++++|+++++.+|.++. +|.......+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEee
Confidence 457888887775433333332 34567999999997 6666688999999999999998863 3444445557999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353 102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD 181 (596)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (596)
.+|.|.+.....++.++.|+.|||+.|.|+ .++..-+..-.++++|+++.|+|+......+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F------------------ 193 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHF------------------ 193 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccc------------------
Confidence 999998888888999999999999999887 5665544444678889998888864333222
Q ss_pred cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.-.-.|.++++|+.|.|..|
T Consensus 194 ------------------~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 194 ------------------DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ------------------cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 12568899999999999888888999999999999999998555778999999999999999
Q ss_pred cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCC
Q 044353 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP 341 (596)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 341 (596)
.|......+|..+.++++|+|+.|++...-..|++ ++.+|+.|++++|.+..+.+..+..+++|++|+|++|+++...+
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 99988889999999999999999999855566777 89999999999999998888999999999999999999996555
Q ss_pred ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353 342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL 421 (596)
Q Consensus 342 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 421 (596)
.+|.. ++.|+.|+|++|.++..-..+|..+++|++|
T Consensus 335 ~sf~~--------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 335 GSFRV--------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred hHHHH--------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 55554 4458899999999998888899999999999
Q ss_pred eccCccCcccCCc---cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC
Q 044353 422 NLSHNLFTGRIPD---NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND 498 (596)
Q Consensus 422 ~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~ 498 (596)
||++|.++..+.+ .|.++++|+.|++.+|++..+...+|.+++.|+.|||.+|.+...-+.+..-..++.+.+..-.
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS 450 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence 9999999876665 4778999999999999999777789999999999999999999888877554477777776555
Q ss_pred -CCCCCCC
Q 044353 499 -LCGAPLS 505 (596)
Q Consensus 499 -lc~~~~~ 505 (596)
+|+|.+.
T Consensus 451 flCDCql~ 458 (873)
T KOG4194|consen 451 FLCDCQLK 458 (873)
T ss_pred eEEeccHH
Confidence 8988754
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-38 Score=293.43 Aligned_cols=446 Identities=24% Similarity=0.331 Sum_probs=308.7
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
+++++|.++. +...+.++..|.+|++++|.++ ..|.+++.+..++.++.+.|++. .+|. .+..+..|+.+++++|.
T Consensus 50 lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 50 LILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhccccc
Confidence 4566777763 3445667777777777777777 55667777777777777777776 6666 67777777777777777
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
+. ..++.++.+..|+.++..+|++. ..|..+..+.++..+++.+|++.. .|..... +++|++++...|.+... |.
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~L~tl-P~ 200 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNLLETL-PP 200 (565)
T ss_pred ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhhhhcC-Ch
Confidence 65 34556666777777777777775 455566667777777777777763 4444333 56777777777765432 22
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcc-cCCCCCCcEEEccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDC-WMNWPRLRMLNLGNNNFT 240 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 240 (596)
..+.+-+. ..+++.+|.+.. + .++..+..|++|+++.|.+.- +|.. ...++++.+||+.+|+++
T Consensus 201 ~lg~l~~L--------~~LyL~~Nki~~-----l-Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 201 ELGGLESL--------ELLYLRRNKIRF-----L-PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhcchhhh--------HHHHhhhccccc-----C-CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccc
Confidence 22211000 334455555431 1 134446778888888887754 4433 447778888888888887
Q ss_pred ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccC-----------------------------
Q 044353 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI----------------------------- 291 (596)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------------- 291 (596)
..|+.+..+.+|+.||+++|.|+ ..|..++++ +|+.|.+.||.+. ++
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 77777777788888888888888 456677777 7888888888764 11
Q ss_pred ---------chhhhh---hcccccEEEccCCcCcCcCCcccCCCC---CCcEEeCCCCcCcccCCccccccccCccc-CC
Q 044353 292 ---------PTWIGE---TFSRLMILNLRSNKFHGDFPIQLCRLG---SLQILDVAYNSLSGTIPRCINNFSAMATT-DS 355 (596)
Q Consensus 292 ---------~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~l-~l 355 (596)
+.+.+. ...+.+.|+++.-.++ .+|..+.... -....+++.|++. ++|..+..+..+.+. .+
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 111111 1334666666666666 4444332222 3667777777776 677666655554332 22
Q ss_pred CCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcc
Q 044353 356 SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN 435 (596)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 435 (596)
+.+. .++.+...+.+++|..|++++|-+- .+|..++++..|++|++|.|++. .+|.+
T Consensus 420 snn~---------------------isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 420 SNNK---------------------ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred hcCc---------------------cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 2221 2334445566888999999999887 78999999999999999999998 89998
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCC
Q 044353 436 IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLC 500 (596)
Q Consensus 436 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc 500 (596)
+..+..++.+-.++|++....|+.+.+|.+|++||+.+|.+....|..+.+.+++.+.++|||.-
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88888899999999999977778899999999999999999988888899999999999999855
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-34 Score=284.39 Aligned_cols=379 Identities=22% Similarity=0.340 Sum_probs=242.6
Q ss_pred eeecCCCcc-ccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 2 LFLRRSQFY-GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 2 l~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+++|.|+ +..|.....++.++.|.|....+. .+|+.++.+.+|++|.++.|++. .+-. .++.++.|+.+++..|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhHHHhhhcc
Confidence 456666666 345666666666666666666655 45666666666666666666655 3332 5556666666666666
Q ss_pred eee-eEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353 81 SLV-FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 81 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (596)
++. ..+|..+..+..|..|+|++|++. ..|..+..-+++-+|+|++|.|. .+|..++..+..|-.|++++|++...
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L- 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML- 165 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc-
Confidence 654 233445555666666666666664 45555555566666666666664 56666555555666666666655211
Q ss_pred CCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccc
Q 044353 160 PKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239 (596)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (596)
+..+..+..|+.|+|++|.+....-..+..++.|++|.+++.+-
T Consensus 166 ------------------------------------PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 166 ------------------------------------PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred ------------------------------------CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 11112245677777777766543333344556666777766653
Q ss_pred c-ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc
Q 044353 240 T-GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318 (596)
Q Consensus 240 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 318 (596)
+ ..+|.++.++.+|..+|++.|.+. +.|+.+..+++|+.|+|++|+++ .+..... .-.+|+.|+++.|.++ .+|.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchH
Confidence 3 356667777777777777777777 66777777777777777777776 5544443 2456777777777777 6677
Q ss_pred ccCCCCCCcEEeCCCCcCcc-cCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEE
Q 044353 319 QLCRLGSLQILDVAYNSLSG-TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI 397 (596)
Q Consensus 319 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 397 (596)
+++.++.|+.|.+.+|+++- -+|..++.+.. |+.+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~--------------------------------------------Levf 321 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ--------------------------------------------LEVF 321 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhh--------------------------------------------hHHH
Confidence 77777777777777776642 35555555443 6666
Q ss_pred EccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353 398 DISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472 (596)
Q Consensus 398 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 472 (596)
..++|.+. .+|+.++.|..|+.|.|+.|++- ..|+++.-++.|+.||++.|.--.+.|..-..-.+|+.-++.
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 77777776 88888999999999999999887 788888888999999999886665666543333455544443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=6.5e-35 Score=272.93 Aligned_cols=421 Identities=24% Similarity=0.343 Sum_probs=332.9
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+++.|++. ..|++++.+..+..|++++|.++ .+|+.+..+.+|+.++.++|.+. .++. .++.+..|+.++..+|
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNN 147 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCc-hHHHHhhhhhhhcccc
Confidence 3678889988 67999999999999999999998 78999999999999999999998 7776 8899999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP 160 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (596)
+++ ..|..+..+.+|..+++.+|+++...+..+. +++|++||...|-++ .+|..+.. +.+|.-|++.+|++..
T Consensus 148 ~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~~--- 220 (565)
T KOG0472|consen 148 QIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIRF--- 220 (565)
T ss_pred ccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccccc---
Confidence 987 4567788899999999999999877666666 999999999999886 78888754 7899999999999842
Q ss_pred CCCCCCCCccccCCCCC----ceEEcccCccccccccccccCC-CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcc
Q 044353 161 KFDSPSVPLITTPSLLG----SIFDLSNNALSGSIFHLICQGE-NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLG 235 (596)
Q Consensus 161 ~~~~~~~~~~~~~~~~~----~~l~ls~n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 235 (596)
+|+++. ..+..+.|.+..- +++. .+++.+..||+..|++.+ .|+.++-+.+|..||++
T Consensus 221 -----------lPef~gcs~L~Elh~g~N~i~~l-----pae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 221 -----------LPEFPGCSLLKELHVGENQIEML-----PAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLS 283 (565)
T ss_pred -----------CCCCCccHHHHHHHhcccHHHhh-----HHHHhcccccceeeecccccccc-CchHHHHhhhhhhhccc
Confidence 233332 5566777766432 2222 247788899999999974 78888888999999999
Q ss_pred cccccccCCccCcCCCCCcEEEccCCcccccC--------------------------------------Ch---hhcCC
Q 044353 236 NNNFTGSLPMSIGALNSLMSLNLRNNRLSGII--------------------------------------PT---SFRNL 274 (596)
Q Consensus 236 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------------------------------~~---~~~~l 274 (596)
+|.++ ..|..++++ +|+.|-+.+|.+.++- +. ....+
T Consensus 284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred CCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 99998 678888888 8999999998764221 01 11234
Q ss_pred CCCCEEEccCCcccccCchhhhhhcc--cccEEEccCCcCcCcCCcccCCCCCCcEE-eCCCCcCcccCCccccccccCc
Q 044353 275 SILKALDMGENELVGNIPTWIGETFS--RLMILNLRSNKFHGDFPIQLCRLGSLQIL-DVAYNSLSGTIPRCINNFSAMA 351 (596)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~ 351 (596)
.+.+.|++++-+++ .+|+..|+.-. -....+++.|.+. ++|..+..+..+.+. .+++|.++ -+|..+..++.+.
T Consensus 362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt 438 (565)
T KOG0472|consen 362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcce
Confidence 46777888888887 88888875332 2667888888887 667666555544433 34444443 6677777777777
Q ss_pred ccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc
Q 044353 352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 431 (596)
Q Consensus 352 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 431 (596)
.++++++..... +.....+..|+.|+||.|.|. ..|..+..+..++++-.++|++...
T Consensus 439 ~L~L~NN~Ln~L---------------------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 439 FLDLSNNLLNDL---------------------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred eeecccchhhhc---------------------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 777766543222 222334666999999999998 8999888888999999999999977
Q ss_pred CCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353 432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 477 (596)
.++.+.++.+|.+|||.+|.+. .+|..+++|.+|++|++++|+|.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7777999999999999999999 77888999999999999999998
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.5e-33 Score=273.25 Aligned_cols=373 Identities=23% Similarity=0.339 Sum_probs=309.6
Q ss_pred ccCCCCCCEEECcCCccc-ccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCC
Q 044353 17 LGRFKTLRALDLSNNTVN-GPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ 95 (596)
Q Consensus 17 l~~l~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 95 (596)
.+-++..+-.|+++|.++ +.+|.....+++++.|.|...++. .+|. .++.+.+|++|.+++|++.. ....++.++.
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~ 79 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS-VHGELSDLPR 79 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh-hhhhhccchh
Confidence 356788899999999999 568999999999999999999997 8998 89999999999999999864 3456788999
Q ss_pred ccEEEccCCCCC-CCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353 96 LAFLELRSCHLG-PRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174 (596)
Q Consensus 96 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 174 (596)
|+.+.+++|+++ +.+|..+-.+..|.+|||+.|++. .+|..+-. -+++-.|++++|+|..
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Iet----------------- 140 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIET----------------- 140 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCcccc-----------------
Confidence 999999999986 356777888999999999999997 78888744 4788888888888742
Q ss_pred CCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCc
Q 044353 175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254 (596)
Q Consensus 175 ~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 254 (596)
+|..++. ++..|-.|||++|++.. .|.....+..|++|++++|.+.-..-..+..+++|+
T Consensus 141 ----------------IPn~lfi---nLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 141 ----------------IPNSLFI---NLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred ----------------CCchHHH---hhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 2222211 24567789999999975 555678899999999999987744444556778899
Q ss_pred EEEccCCccc-ccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353 255 SLNLRNNRLS-GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAY 333 (596)
Q Consensus 255 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 333 (596)
.|.+++..-+ .-+|.++..+.+|..+|++.|.+. .+|+.++ .+++|+.|+|++|.++ ++......+.+|++|+++.
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhcccc
Confidence 9999987644 357888899999999999999998 8999988 7999999999999998 5555666678899999999
Q ss_pred CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc-ccCCccc
Q 044353 334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS-GEIPVEV 412 (596)
Q Consensus 334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~ 412 (596)
|+++ .+|+++..++. |+.|.+.+|+++ +-+|..+
T Consensus 278 NQLt-~LP~avcKL~k--------------------------------------------L~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTK--------------------------------------------LTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred chhc-cchHHHhhhHH--------------------------------------------HHHHHhccCcccccCCccch
Confidence 9998 78888776555 556666677664 2588899
Q ss_pred cCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCC
Q 044353 413 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 481 (596)
Q Consensus 413 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 481 (596)
+.+..|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.|+.||+..|+=....|
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999999998 99999999999999999999999 789999999999999999998654444
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-32 Score=279.81 Aligned_cols=246 Identities=28% Similarity=0.377 Sum_probs=134.1
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
.+++.+++++|.+.+ +|.+++.+.+|+.++..+|.++ .+|..+....+|+.|....|.+. -.|....+.+.|++|+|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 477777777777765 4477777777777777777775 66666777777777777777777 34445566777777777
Q ss_pred cCCcccccCchhhhhhccc-ccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353 283 GENELVGNIPTWIGETFSR-LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 361 (596)
..|++. .+|+.++..... |..+..+.|++.......=...+.|+.|++.+|.++...-..+.++..|+.++++++...
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777775 666655433222 444444444444221111122344555555555555443333333333333333322211
Q ss_pred ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441 (596)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 441 (596)
.++. .....+..|+.|+||+|.++ .+|.++..++.|++|...+|++. ..| .+..++.
T Consensus 397 ~fpa--------------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q 453 (1081)
T KOG0618|consen 397 SFPA--------------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ 453 (1081)
T ss_pred cCCH--------------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc
Confidence 1110 11122344555666666665 45555666666666666666655 444 4555666
Q ss_pred CCEEECCCCcCcccCCccccCCCCCCEEeccccc
Q 044353 442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN 475 (596)
Q Consensus 442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~ 475 (596)
|+.+|+|.|+++...-..-...++|++||+++|.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 6666666666654322111222556666666665
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=6.9e-30 Score=262.83 Aligned_cols=432 Identities=22% Similarity=0.263 Sum_probs=309.5
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+||+++|++. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.+|++. .+|. .+..+++|++|++++|
T Consensus 49 ~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 49 SLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFN 124 (1081)
T ss_pred Eeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchh
Confidence 4799999988 68999999999999999999998 56888999999999999999987 8887 8999999999999999
Q ss_pred eeeeEeCCCCCCCC-------------------CccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhc
Q 044353 81 SLVFKINPNWVPPF-------------------QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS 141 (596)
Q Consensus 81 ~l~~~~~~~~~~l~-------------------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 141 (596)
.+... |..+..+. .++.+++..|.+.+.++..+..++. .|++..|.+. .... ..
T Consensus 125 ~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl---s~ 197 (1081)
T KOG0618|consen 125 HFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL---SN 197 (1081)
T ss_pred ccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh---hh
Confidence 87532 22222222 2556666666666666666666655 6888888765 2221 12
Q ss_pred CCCCcEEEcccccccccCCCC---------CCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCc
Q 044353 142 IFQYDYLNVSGNQIYGGVPKF---------DSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 211 (596)
Q Consensus 142 l~~L~~L~l~~n~l~~~~~~~---------~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~ 211 (596)
+.+|+.+....|+++...-.. ..........|.-.. +.++++++.+.+.. +++. .+.+|+.+...
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~----~~~nle~l~~n 272 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIG----ACANLEALNAN 272 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHH----hcccceEeccc
Confidence 344444444444443211000 000000111121122 78999999987543 4444 48999999999
Q ss_pred CCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCC-CCEEEccCCccccc
Q 044353 212 KNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSI-LKALDMGENELVGN 290 (596)
Q Consensus 212 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~ 290 (596)
+|.+. ..|..+....+|+.|.+.+|.+. -+|+...++.+|++|+|..|++....+..|.-... |..+..+.|++. .
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~ 349 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-T 349 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-c
Confidence 99995 57777888899999999999998 67777888999999999999999555444444443 677777777775 5
Q ss_pred CchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCC
Q 044353 291 IPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDN 370 (596)
Q Consensus 291 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 370 (596)
.|..-....+.|+.|++.+|.++...-..+.+.+.|+.|+|++|.+.......+.++..|+.++++++.......
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~----- 424 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD----- 424 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-----
Confidence 665444456778888888888876665667777888888888888874444566778888888887765432221
Q ss_pred ceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCC
Q 044353 371 EIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 450 (596)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 450 (596)
-...++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-......++|++||+++|
T Consensus 425 ----------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 425 ----------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred ----------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 1223667899999999997 666 7899999999999999997544433333489999999999
Q ss_pred cCcccCCccccCCCCCCEEecccc
Q 044353 451 QLSGQIPQSMSNLSFLNYLNLSNN 474 (596)
Q Consensus 451 ~l~~~~~~~~~~l~~L~~L~ls~N 474 (596)
.=.......|..+..+..+++.-|
T Consensus 487 ~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 487 TRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccccchhhhHHhhhhhheecccC
Confidence 744355566777777877777766
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=5.2e-28 Score=226.59 Aligned_cols=407 Identities=22% Similarity=0.242 Sum_probs=197.5
Q ss_pred CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC-CeeeeEeCCCCCCCCCccEEEc
Q 044353 23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG-NSLVFKINPNWVPPFQLAFLEL 101 (596)
Q Consensus 23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L 101 (596)
-..++|..|+|+.+.+.+|..+++||.||||.|+|+ .|...+|.+++.|.+|.+-+ |+|+.....+|.++..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344555555555555555555555555555555555 44444555555554444433 5555555555555555555555
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccccc-CCCCCCCCCCc--cccCCCCC-
Q 044353 102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGG-VPKFDSPSVPL--ITTPSLLG- 177 (596)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~--~~~~~~~~- 177 (596)
.-|++.-.....|..++++..|.+.+|.+. .++...+..+.+++.+.+..|.+-.. .-.+....... ....-+..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 555555555555556666666666555554 34444444455555555555542110 00000000000 00000000
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-cccCCCCCCcEEEcccccccccCCccCcCCCCCcEE
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 256 (596)
....+.+.++.......+-.. .+.+..-..+.+...++.| .+|..+++|++|++++|+++.+-+.+|.+...+++|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred chHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 001111222211111111000 0111111112222222222 446667777777777777776666677777777777
Q ss_pred EccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCc-----CCcccC----------
Q 044353 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD-----FPIQLC---------- 321 (596)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~---------- 321 (596)
.|..|++..+....|.++..|+.|+|.+|+|+ .+....|..+.+|..|.+-.|.+... +.+++.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC 382 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence 77777776666666777777777777777776 55555555566666666655544210 000000
Q ss_pred -CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccE-EEc
Q 044353 322 -RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRS-IDI 399 (596)
Q Consensus 322 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~L 399 (596)
.--.++.++++...+. .+..+ +.... .......-...++-+.+ ..-
T Consensus 383 q~p~~~~~~~~~dv~~~------------------------~~~c~-~~ee~-------~~~~s~~cP~~c~c~~tVvRc 430 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVAFG------------------------DFRCG-GPEEL-------GCLTSSPCPPPCTCLDTVVRC 430 (498)
T ss_pred CCCchhccccchhcccc------------------------ccccC-Ccccc-------CCCCCCCCCCCcchhhhhHhh
Confidence 0001222222222221 11000 00000 00000000001111211 122
Q ss_pred cCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccc
Q 044353 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 474 (596)
Q Consensus 400 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 474 (596)
|+..+. .+|..+ .....+|++.+|.++ .+|+. .+.+| .+|+++|+++......|.+|.+|.+|-+++|
T Consensus 431 Snk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 431 SNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 333333 444332 234677899999998 67776 66788 8999999998777778999999999988876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.8e-22 Score=228.17 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=77.3
Q ss_pred CccccCCCCCCEEECcCCcc------cccCCccCcCCC-CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe
Q 044353 14 TNQLGRFKTLRALDLSNNTV------NGPIPLSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI 86 (596)
Q Consensus 14 ~~~l~~l~~L~~L~ls~n~i------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 86 (596)
+.+|.++++|+.|.+..+.+ ...+|+.|..++ +|+.|.+.++.+. .+|. .| ...+|++|++++|.+.. .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-c
Confidence 34566677777777654432 223455555543 4777777776665 5554 33 35667777777666543 3
Q ss_pred CCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc
Q 044353 87 NPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ 154 (596)
Q Consensus 87 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 154 (596)
+..+..+++|+.|+|+++.....+| .++.+++|+.|++++|.....+|..+. .+++|+.|++++|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCE 692 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCC
Confidence 3445566667777776655333333 355666666666666544445555542 35666666666553
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=7.7e-26 Score=212.10 Aligned_cols=300 Identities=21% Similarity=0.190 Sum_probs=233.5
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC-CcccccCChhhcCCCCCCEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN-NRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 280 (596)
++..++++|..|.|+.+.+.+|..+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+.+....|.++.+|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999988877766 99999888999999999999
Q ss_pred EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc------------ccCCccccccc
Q 044353 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS------------GTIPRCINNFS 348 (596)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~ 348 (596)
.+.-|++. .++...+..++++..|.+..|.+.......|..+.+++.+.+..|++. ...|..++...
T Consensus 146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99999997 888888889999999999999998554558899999999999988832 11122222211
Q ss_pred cCcccCCCCCCCCccccCCCCCceeeee-------EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353 349 AMATTDSSDPNSGIFYASSGDNEIVEDA-------LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL 421 (596)
Q Consensus 349 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 421 (596)
-.+-..+.+......... ......+.. ......-....+..+++|++|+|++|++++..+.+|.+...+++|
T Consensus 225 c~~p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111100000000000000 000000000 000000011225679999999999999999999999999999999
Q ss_pred eccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCCC
Q 044353 422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCG 501 (596)
Q Consensus 422 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc~ 501 (596)
.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|++.|.|.-.+....++.-...|||-|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 99999998777788999999999999999999999999999999999999999999999888777777777788888888
Q ss_pred CC
Q 044353 502 AP 503 (596)
Q Consensus 502 ~~ 503 (596)
.|
T Consensus 384 ~p 385 (498)
T KOG4237|consen 384 SP 385 (498)
T ss_pred CC
Confidence 65
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=224.86 Aligned_cols=338 Identities=20% Similarity=0.226 Sum_probs=161.8
Q ss_pred hhhhcCCCCcEEEccCCe------eeeEeCCCCCCCC-CccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353 64 IHFLNLTQLLVFRAHGNS------LVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136 (596)
Q Consensus 64 ~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 136 (596)
.+|.++.+|+.|.+..+. +....+..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++++. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 355666666666654332 2223334444433 4666666665554 333333 3456666666666554 3333
Q ss_pred hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC
Q 044353 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS 216 (596)
Q Consensus 137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 216 (596)
.+ ..+++|+.|+++++......|. ++.+++|+.|++++|...
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip~-------------------------------------ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIPD-------------------------------------LSMATNLETLKLSDCSSL 670 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCCc-------------------------------------cccCCcccEEEecCCCCc
Confidence 33 2345666666655432211111 112345555555554433
Q ss_pred CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh
Q 044353 217 EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG 296 (596)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (596)
..+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|.. ..+|+.|++++|.+. .+|..+
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~- 744 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL- 744 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-
Confidence 4444445555555555555543222344333 4455555555554433233321 234555555555543 444433
Q ss_pred hhcccccEEEccCCcCc-------CcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCC
Q 044353 297 ETFSRLMILNLRSNKFH-------GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369 (596)
Q Consensus 297 ~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 369 (596)
.+++|+.|.+.++... ...+......++|+.|++++|+..+.+|..++++++|+.+++++|......+.
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--- 820 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--- 820 (1153)
T ss_pred -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---
Confidence 2444554444432211 00111112234555555555544445555555555555555544321111000
Q ss_pred CceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCC
Q 044353 370 NEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA 449 (596)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 449 (596)
. ..+++|+.|++++|......|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++
T Consensus 821 -----------------~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 821 -----------------G-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred -----------------C-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 0 02455666666666443334332 245667777777666 5666666677777777766
Q ss_pred C-cCcccCCccccCCCCCCEEeccccc
Q 044353 450 N-QLSGQIPQSMSNLSFLNYLNLSNNN 475 (596)
Q Consensus 450 N-~l~~~~~~~~~~l~~L~~L~ls~N~ 475 (596)
| ++. .+|..+..+++|+.+++++|.
T Consensus 879 C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 879 CNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcC-ccCcccccccCCCeeecCCCc
Confidence 3 333 455556666667777766664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2e-20 Score=199.55 Aligned_cols=128 Identities=28% Similarity=0.363 Sum_probs=101.6
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
.+|+.|++++|.+.+ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.+.+ .|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 478999999999986 4432 357888999999988 45643 3578999999999985 4432 367999999
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 348 (596)
++|++. .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+.
T Consensus 410 S~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 410 SGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred cCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 999997 67753 346888999999998 6888899999999999999999987777665443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.8e-20 Score=198.43 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=115.4
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
++|+.|++++|.+.. +|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.++++ |.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWA 329 (788)
T ss_pred cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---ccccccccc
Confidence 355555555555543 2221 134555555555555 2332 124555556655555532 221 123555555
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
++|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|.++ .+|..
T Consensus 330 s~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l------------------- 380 (788)
T PRK15387 330 YNNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL------------------- 380 (788)
T ss_pred ccCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc-------------------
Confidence 555554 34431 135556666666555 23321 234555555555554 23321
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 442 (596)
..+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|
T Consensus 381 ----------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 381 ----------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred ----------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 234777888888887 35543 356888888888887 45653 3467
Q ss_pred CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 78888888888 6677788888888888888888866543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.5e-18 Score=186.51 Aligned_cols=204 Identities=25% Similarity=0.426 Sum_probs=117.9
Q ss_pred CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 044353 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283 (596)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (596)
+|+.|++++|.++. +|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence 56666666666653 333322 35666666666665 4444432 356666666666663 343332 356666666
Q ss_pred CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcc
Q 044353 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF 363 (596)
Q Consensus 284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 363 (596)
+|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------------------- 344 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL------------------- 344 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh-------------------
Confidence 66665 4554332 35666666666666 2343322 466666666666652 33322
Q ss_pred ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 443 (596)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 443 (596)
.++|+.|++++|+++ .+|..+ .++|+.|+|++|+++ .+|..+. ..|+
T Consensus 345 ---------------------------~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~ 391 (754)
T PRK15370 345 ---------------------------PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQ 391 (754)
T ss_pred ---------------------------cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHH
Confidence 234677777777776 455544 256777777777777 4555443 3577
Q ss_pred EEECCCCcCcccCCcc----ccCCCCCCEEecccccCc
Q 044353 444 SLDFSANQLSGQIPQS----MSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 444 ~L~Ls~N~l~~~~~~~----~~~l~~L~~L~ls~N~l~ 477 (596)
.|++++|+++ .+|.. +..++.+..+++.+|+++
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7777777777 33433 333466777777777775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=9.1e-18 Score=180.56 Aligned_cols=247 Identities=26% Similarity=0.374 Sum_probs=173.5
Q ss_pred CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEE
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE 100 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 100 (596)
.+...|+++++.++. +|..+. ++|+.|+|++|+++ .+|...+ .+|++|++++|.++.. +..+ ...|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence 356788888888874 565543 57888888888887 6775332 4788888888887633 3322 23688888
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceE
Q 044353 101 LRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180 (596)
Q Consensus 101 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l 180 (596)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|+++.. |
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P-------------------- 299 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-P-------------------- 299 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-c--------------------
Confidence 8888876 4455443 47888888888887 4665442 4678888888776421 1
Q ss_pred EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC
Q 044353 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260 (596)
Q Consensus 181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 260 (596)
..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++
T Consensus 300 ------------~~l------p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~ 355 (754)
T PRK15370 300 ------------AHL------PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSK 355 (754)
T ss_pred ------------ccc------hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCC
Confidence 100 2367788888888875 34333 257888889888887 4665553 6889999999
Q ss_pred CcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc----CCCCCCcEEeCCCCcC
Q 044353 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL----CRLGSLQILDVAYNSL 336 (596)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l 336 (596)
|.+. ..|..+ .++|+.|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+ ..++.+..+++.+|++
T Consensus 356 N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 356 NQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 9888 455544 368999999999987 7887664 36888999999887 455443 4457888999999988
Q ss_pred c
Q 044353 337 S 337 (596)
Q Consensus 337 ~ 337 (596)
+
T Consensus 428 s 428 (754)
T PRK15370 428 S 428 (754)
T ss_pred c
Confidence 6
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.9e-19 Score=178.72 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=45.9
Q ss_pred ccccEEEccCCcccccCCcccc-----CcccCCeeeccCccCcc----cCCccccCCCCCCEEECCCCcCccc----CCc
Q 044353 392 NLVRSIDISKNNFSGEIPVEVT-----NLQGLQSLNLSHNLFTG----RIPDNIGVMRSIESLDFSANQLSGQ----IPQ 458 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~ 458 (596)
++|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 3455555555555432111111 23567777777776652 2223445556777777777777743 233
Q ss_pred cccCC-CCCCEEecccccC
Q 044353 459 SMSNL-SFLNYLNLSNNNL 476 (596)
Q Consensus 459 ~~~~l-~~L~~L~ls~N~l 476 (596)
.+... +.|+.+++.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 33344 5677777777654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=5.6e-19 Score=176.67 Aligned_cols=277 Identities=22% Similarity=0.216 Sum_probs=141.0
Q ss_pred eeecCCCcc-ccCCccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCcc------ccChhhhhcCC
Q 044353 2 LFLRRSQFY-GHLTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNG------TVSEIHFLNLT 70 (596)
Q Consensus 2 l~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~l~ 70 (596)
|+|..++++ ...+..+..+.+|+.|+++++.++.. ++..+...++|++|+++++.+.+ .++. .+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcC
Confidence 677888887 34566667778888888888887532 44456667778888888877651 1111 455566
Q ss_pred CCcEEEccCCeeeeEeCCCCCCCCC---ccEEEccCCCCCC----CcchhhcCC-CCCcEEEcccCcCcccCChhHHhcC
Q 044353 71 QLLVFRAHGNSLVFKINPNWVPPFQ---LAFLELRSCHLGP----RFPLWLQSQ-KKLYYLDISSTRISAKIPRGFWNSI 142 (596)
Q Consensus 71 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~l 142 (596)
+|++|++++|.+....+..+..+.+ |++|++++|++.. .+...+..+ ++|+.|++++|.+++.....+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~--- 158 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA--- 158 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH---
Confidence 7777777666654333332222222 5555555555442 111223333 4555555555554422211111
Q ss_pred CCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----
Q 044353 143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED---- 218 (596)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~---- 218 (596)
..+..+++|++|++++|.+.+.
T Consensus 159 ------------------------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 159 ------------------------------------------------------KALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred ------------------------------------------------------HHHHhCCCcCEEECcCCCCchHHHHH
Confidence 1111133444555555444321
Q ss_pred CCcccCCCCCCcEEEcccccccc----cCCccCcCCCCCcEEEccCCcccccCChhhc-----CCCCCCEEEccCCcccc
Q 044353 219 IPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSGIIPTSFR-----NLSILKALDMGENELVG 289 (596)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~ 289 (596)
++..+..+++|+.|++++|.+++ .+...+..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 11122333455555555555442 1223344455666666666665532222221 13566677777666642
Q ss_pred cCchhh---hhhcccccEEEccCCcCcCc----CCcccCCC-CCCcEEeCCCCcC
Q 044353 290 NIPTWI---GETFSRLMILNLRSNKFHGD----FPIQLCRL-GSLQILDVAYNSL 336 (596)
Q Consensus 290 ~~~~~~---~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l 336 (596)
.....+ ...+++|+++++++|.+... ....+... +.|+++++.+|++
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 111111 11345677777777766633 23333334 5677777776653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.9e-18 Score=142.41 Aligned_cols=90 Identities=23% Similarity=0.448 Sum_probs=66.1
Q ss_pred ccEEEccCCcccc-cCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353 394 VRSIDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472 (596)
Q Consensus 394 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 472 (596)
|+.||+++|++.+ ..|..|..++.|+.|+|+.|.+. .+|..++.+++|+.|.+++|.+. ..|..++.+..|+.|.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 3444444444432 45667777788888888888887 77777888888888888888887 677788888888888888
Q ss_pred cccCccCCCCCCc
Q 044353 473 NNNLNGEIPSSTQ 485 (596)
Q Consensus 473 ~N~l~~~~~~~~~ 485 (596)
+|+++...|+..+
T Consensus 182 gnrl~vlppel~~ 194 (264)
T KOG0617|consen 182 GNRLTVLPPELAN 194 (264)
T ss_pred cceeeecChhhhh
Confidence 8888766665433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-17 Score=139.51 Aligned_cols=178 Identities=26% Similarity=0.519 Sum_probs=105.6
Q ss_pred CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEe
Q 044353 251 NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILD 330 (596)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 330 (596)
...+.|.|++|+++ ..|..++.+.+|+.|++.+|++. .+|..+. .+++|++|+++-|++. ..|..|+.+|.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 33444444444444 23334445555555555555554 5555544 4555555555555554 5566666666666666
Q ss_pred CCCCcCcc-cCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCC
Q 044353 331 VAYNSLSG-TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409 (596)
Q Consensus 331 l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 409 (596)
+.+|++.. .+|..|.. +..|+-|.++.|++. .+|
T Consensus 109 ltynnl~e~~lpgnff~--------------------------------------------m~tlralyl~dndfe-~lp 143 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFY--------------------------------------------MTTLRALYLGDNDFE-ILP 143 (264)
T ss_pred ccccccccccCCcchhH--------------------------------------------HHHHHHHHhcCCCcc-cCC
Confidence 66666542 23444333 233555666677775 677
Q ss_pred ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC---CCCEEecccccCccC
Q 044353 410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS---FLNYLNLSNNNLNGE 479 (596)
Q Consensus 410 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~ls~N~l~~~ 479 (596)
..++.+++|+-|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++.+. +=+.+.+.+|++...
T Consensus 144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 77888888888888888876 67888888888888888888888 5555555432 223444555665433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=155.86 Aligned_cols=116 Identities=36% Similarity=0.679 Sum_probs=103.5
Q ss_pred cccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472 (596)
Q Consensus 393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 472 (596)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCC--ccCccccccccCCC-CCCCCC-CCCC
Q 044353 473 NNNLNGEIPSST--QLQSFGASSFAGND-LCGAPL-SNCT 508 (596)
Q Consensus 473 ~N~l~~~~~~~~--~~~~l~~~~~~~n~-lc~~~~-~~c~ 508 (596)
+|+++|.+|... ....+..+.+.+|+ +|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999998752 22345567889999 998753 3563
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.2e-13 Score=136.74 Aligned_cols=177 Identities=30% Similarity=0.493 Sum_probs=148.8
Q ss_pred CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcE
Q 044353 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQI 328 (596)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 328 (596)
.+.--...|++.|++. +.|..+..+..|+.+.+..|.+. .+|..+. .+..|.+++|+.|.+. ..|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3445567889999998 77888888888999999999987 8888887 7889999999999988 6777788776 899
Q ss_pred EeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccC
Q 044353 329 LDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408 (596)
Q Consensus 329 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 408 (596)
|-+++|+++ .+|..++. ..+|..||.+.|++. .+
T Consensus 148 li~sNNkl~-~lp~~ig~--------------------------------------------~~tl~~ld~s~nei~-sl 181 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGL--------------------------------------------LPTLAHLDVSKNEIQ-SL 181 (722)
T ss_pred EEEecCccc-cCCccccc--------------------------------------------chhHHHhhhhhhhhh-hc
Confidence 999999988 67776653 344778888899987 78
Q ss_pred CccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353 409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 409 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
|..+.++.+|+.|++..|++. ..|..+..+ .|..||+|.|+++ .+|-.|.+|..|++|-|.+|++...
T Consensus 182 psql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 888999999999999999998 677777744 6889999999999 7888999999999999999999743
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=2.1e-11 Score=131.30 Aligned_cols=114 Identities=30% Similarity=0.524 Sum_probs=100.8
Q ss_pred CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353 325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF 404 (596)
Q Consensus 325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 404 (596)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L--------------------------------------------~~L~~L~Ls~N~l 454 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL--------------------------------------------RHLQSINLSGNSI 454 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC--------------------------------------------CCCCEEECCCCcc
Confidence 37788999999988888777654 4488999999999
Q ss_pred cccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCccCCCC
Q 044353 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~ 482 (596)
.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+++.+|+..|.+|.
T Consensus 455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999988764 5678999999988776553
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.9e-12 Score=118.34 Aligned_cols=222 Identities=19% Similarity=0.232 Sum_probs=128.3
Q ss_pred CCCCccEEeCcCCc--------CCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc
Q 044353 201 FSKNIEFLKLSKNH--------FSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272 (596)
Q Consensus 201 ~~~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 272 (596)
.+..|..|..+... +....|..+.-+.+|+.+.++.+.-.. +.+....-|.|+++.+.+..+... | .+-
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~-~-~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV-P-SLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc-c-ccc
Confidence 35567777666532 222234444556677778887775432 222222336677777666555422 1 111
Q ss_pred CCCCCCEEEcc-----CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCcccccc
Q 044353 273 NLSILKALDMG-----ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNF 347 (596)
Q Consensus 273 ~l~~L~~L~L~-----~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 347 (596)
.+..+....-+ .-.....++.| ..|+.+||++|.++ .+.++..-.|.++.|++++|.+... ..+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa-- 326 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLA-- 326 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhh--
Confidence 12222111111 11111122323 34777888888777 5666777777888888888877621 1111
Q ss_pred ccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCcc
Q 044353 348 SAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427 (596)
Q Consensus 348 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 427 (596)
.+++|+.||||+|.++ .+..+-..+.+.++|.|++|.
T Consensus 327 ------------------------------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 327 ------------------------------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred ------------------------------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 1455777778887776 455555667778888888887
Q ss_pred CcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEecccccCccCC
Q 044353 428 FTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNNLNGEI 480 (596)
Q Consensus 428 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~ 480 (596)
+. ....++.+=+|..||+++|+|.... -..++++|.|+++.|.+|++.+..
T Consensus 364 iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 364 IE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred Hh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 75 2234566677778888888877442 245777788888888888877543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=4.7e-13 Score=132.48 Aligned_cols=213 Identities=26% Similarity=0.405 Sum_probs=168.8
Q ss_pred EeCcCCcCCCCCCcccC-CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCc
Q 044353 208 LKLSKNHFSEDIPDCWM-NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286 (596)
Q Consensus 208 L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (596)
|.|++-++......++. .+.--...+++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|..++|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 44555444432222222 2334456889999998 88888888889999999999999 778889999999999999999
Q ss_pred ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC
Q 044353 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS 366 (596)
Q Consensus 287 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 366 (596)
+. .+|..++ .--|+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.
T Consensus 133 lS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~------------------ 189 (722)
T KOG0532|consen 133 LS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT------------------ 189 (722)
T ss_pred hh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH------------------
Confidence 97 8999888 345999999999998 78888888999999999999988 6666655544
Q ss_pred CCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEE
Q 044353 367 SGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLD 446 (596)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 446 (596)
+|+.|.+..|++. ..|+.+.. -.|..||+|.|++. .+|-.|..|+.|++|.
T Consensus 190 --------------------------slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 190 --------------------------SLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred --------------------------HHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeee
Confidence 4777888888887 67777774 45899999999998 8999999999999999
Q ss_pred CCCCcCcccCCccccC---CCCCCEEeccccc
Q 044353 447 FSANQLSGQIPQSMSN---LSFLNYLNLSNNN 475 (596)
Q Consensus 447 Ls~N~l~~~~~~~~~~---l~~L~~L~ls~N~ 475 (596)
|.+|.++ ..|..+.. ..-.++|+...++
T Consensus 241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999 66655432 3345778887775
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.3e-11 Score=124.01 Aligned_cols=123 Identities=35% Similarity=0.541 Sum_probs=67.1
Q ss_pred EEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCC-CCcEEEccCCcccccCChhhcCCCCCCEEEccCC
Q 044353 207 FLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALN-SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285 (596)
Q Consensus 207 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (596)
.++...+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. ..|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555532 1222344456666666666666 4444444443 6666666666666 33344556666666666666
Q ss_pred cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCc
Q 044353 286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335 (596)
Q Consensus 286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 335 (596)
++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 665 5555443 3556666666666665 344333333445555555554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.9e-12 Score=121.63 Aligned_cols=210 Identities=25% Similarity=0.257 Sum_probs=125.7
Q ss_pred CCCCCcEEEcccccccccCC--ccCcCCCCCcEEEccCCcccccC--ChhhcCCCCCCEEEccCCcccccCchhhhhhcc
Q 044353 225 NWPRLRMLNLGNNNFTGSLP--MSIGALNSLMSLNLRNNRLSGII--PTSFRNLSILKALDMGENELVGNIPTWIGETFS 300 (596)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 300 (596)
++.+|+.+.+.++.+. ..+ .....|++++.|||+.|-+.... ......+|+|+.|+++.|++.-.........++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666667666654 222 24455677777777777666332 234456777777777777765222222223467
Q ss_pred cccEEEccCCcCcC-cCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEE
Q 044353 301 RLMILNLRSNKFHG-DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV 379 (596)
Q Consensus 301 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 379 (596)
.|+.|.++.|.++. .+...+..+|+|+.|++..|.....-....
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~----------------------------------- 242 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST----------------------------------- 242 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-----------------------------------
Confidence 77888888877762 223344567778888887775221111111
Q ss_pred eccceeecccccccccEEEccCCcccccC-CccccCcccCCeeeccCccCccc-CCcc-----ccCCCCCCEEECCCCcC
Q 044353 380 TKGFLVEYNSILNLVRSIDISKNNFSGEI-PVEVTNLQGLQSLNLSHNLFTGR-IPDN-----IGVMRSIESLDFSANQL 452 (596)
Q Consensus 380 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~N~l 452 (596)
..+..|+.|||++|++.... ......++.|+.|+++.+.+.+. .|++ ...+++|+.|+++.|++
T Consensus 243 ---------~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 243 ---------KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ---------hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 11444777777777765221 13456778888888888877643 2332 35567888888888888
Q ss_pred cccC-CccccCCCCCCEEecccccCccC
Q 044353 453 SGQI-PQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 453 ~~~~-~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
...- -..+..+++|+.|....|.++.+
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccccchhhccchhhhhhccccccccc
Confidence 6321 13345567777778778877654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=6.1e-11 Score=122.06 Aligned_cols=198 Identities=33% Similarity=0.509 Sum_probs=122.0
Q ss_pred EEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCC-CCCEEEccCCcccccCchhhhhhcccccEEEccC
Q 044353 231 MLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLS-ILKALDMGENELVGNIPTWIGETFSRLMILNLRS 309 (596)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 309 (596)
.++...+.+. .....+..++.++.|++.+|.+..+ +......+ +|+.|++++|++. .+|..+. .++.|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 5666666653 2222344456777777777777743 33444553 7777777777776 6654444 577777777777
Q ss_pred CcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccc
Q 044353 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNS 389 (596)
Q Consensus 310 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (596)
|.+. .+|......+.|+.|++++|.++ .+|.....
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~------------------------------------------- 207 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL------------------------------------------- 207 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-------------------------------------------
Confidence 7777 44544446677777777777777 44443322
Q ss_pred ccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353 390 ILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469 (596)
Q Consensus 390 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 469 (596)
...|+++++++|.+. ..+..+..+..+..+.+++|++. ..+..++.++.++.|++++|.++...+ +..+.+++.|
T Consensus 208 -~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L 282 (394)
T COG4886 208 -LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL 282 (394)
T ss_pred -hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence 222555666666433 44555666666666666666665 335556666667777777777764333 6666667777
Q ss_pred ecccccCccCCCC
Q 044353 470 NLSNNNLNGEIPS 482 (596)
Q Consensus 470 ~ls~N~l~~~~~~ 482 (596)
++++|.+....+.
T Consensus 283 ~~s~n~~~~~~~~ 295 (394)
T COG4886 283 DLSGNSLSNALPL 295 (394)
T ss_pred eccCccccccchh
Confidence 7777766654443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.7e-11 Score=106.64 Aligned_cols=131 Identities=22% Similarity=0.155 Sum_probs=51.9
Q ss_pred cccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCC
Q 044353 16 QLGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF 94 (596)
Q Consensus 16 ~l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 94 (596)
.+.+..++++|+|++|.|+.+ +.+. .+.+|+.|+|++|.|+ .++ .+..+++|++|++++|.++.........++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCC
Confidence 344566789999999999864 3455 5789999999999998 676 588899999999999999854322123588
Q ss_pred CccEEEccCCCCCCCc-chhhcCCCCCcEEEcccCcCcccCC--hhHHhcCCCCcEEEcc
Q 044353 95 QLAFLELRSCHLGPRF-PLWLQSQKKLYYLDISSTRISAKIP--RGFWNSIFQYDYLNVS 151 (596)
Q Consensus 95 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~ 151 (596)
+|+.|++++|++.... -..++.+++|+.|++.+|+++..-. ..+...+++|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999999986532 3567889999999999999874322 1234557899998754
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=2.8e-12 Score=120.00 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=73.1
Q ss_pred CCCccEEeCcCCcCCCCCC----cccCCCCCCcEEEcccccccc----cCCccCcCCCCCcEEEccCCccccc----CCh
Q 044353 202 SKNIEFLKLSKNHFSEDIP----DCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSGI----IPT 269 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 269 (596)
.++|+.+...+|++..... ..|...+.|+.+.++.|.|.. ....+|..+++|+.|||.+|.++.. ...
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3456666666665543221 223444566666666665541 2223455666666666666666533 223
Q ss_pred hhcCCCCCCEEEccCCcccccCchhhh----hhcccccEEEccCCcCcCc----CCcccCCCCCCcEEeCCCCcC
Q 044353 270 SFRNLSILKALDMGENELVGNIPTWIG----ETFSRLMILNLRSNKFHGD----FPIQLCRLGSLQILDVAYNSL 336 (596)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 336 (596)
.+..+++|+.+++++|.+.......+. ...|+|+++.+.+|.++.. +.......+.|..|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 445566666666666666544333332 2345667777777766521 122233456777777777776
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.1e-11 Score=117.37 Aligned_cols=209 Identities=22% Similarity=0.230 Sum_probs=144.8
Q ss_pred cCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCc-hhhhhhcccccEEEccCCcCcCcCCcc-cCCCC
Q 044353 248 GALNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIP-TWIGETFSRLMILNLRSNKFHGDFPIQ-LCRLG 324 (596)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 324 (596)
+++.+|+.+.|.+..+..... .....+++++.|||+.|-++..-+ ..+.+.+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788999999988873322 466789999999999998762222 244457899999999999886322221 22467
Q ss_pred CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353 325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF 404 (596)
Q Consensus 325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 404 (596)
.|+.|.++.|.++-. .+.+ ....+|+|+.|++++|..
T Consensus 198 ~lK~L~l~~CGls~k---~V~~----------------------------------------~~~~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWK---DVQW----------------------------------------ILLTFPSLEVLYLEANEI 234 (505)
T ss_pred hhheEEeccCCCCHH---HHHH----------------------------------------HHHhCCcHHHhhhhcccc
Confidence 888899999887621 1111 112277799999999954
Q ss_pred cccCCccccCcccCCeeeccCccCcccC-CccccCCCCCCEEECCCCcCccc-CCcc-----ccCCCCCCEEecccccCc
Q 044353 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQ-IPQS-----MSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-----~~~l~~L~~L~ls~N~l~ 477 (596)
.........-++.|++|||++|++.+.. ....+.++.|+.|+++.+.+..+ .|+. ....++|++|+++.|++.
T Consensus 235 ~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 235 ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3344445566788999999999986433 13468899999999999999854 3443 356799999999999985
Q ss_pred c--CCCCCCccCccccccccCCCC
Q 044353 478 G--EIPSSTQLQSFGASSFAGNDL 499 (596)
Q Consensus 478 ~--~~~~~~~~~~l~~~~~~~n~l 499 (596)
. .......+.++..+.+.+|++
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccchhhccchhhhhhcccccc
Confidence 2 222334455566666667663
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=6.6e-12 Score=117.57 Aligned_cols=249 Identities=20% Similarity=0.226 Sum_probs=146.5
Q ss_pred CcCCCCCCEEECcCCcCcc----ccChhhhhcCCCCcEEEccCCeeeeE----e-------CCCCCCCCCccEEEccCCC
Q 044353 41 LGQIANLEYLDLSNNKLNG----TVSEIHFLNLTQLLVFRAHGNSLVFK----I-------NPNWVPPFQLAFLELRSCH 105 (596)
Q Consensus 41 ~~~l~~L~~L~Ls~n~i~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~-------~~~~~~l~~L~~L~L~~n~ 105 (596)
...+..+++++||+|.+.. .+.. .+.+.++|+..++++= +++. + ..++..+++|++|+|++|.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3345556666666665531 1111 3445556666665541 1111 1 1244556788888888888
Q ss_pred CCCCcchh----hcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC-ceE
Q 044353 106 LGPRFPLW----LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG-SIF 180 (596)
Q Consensus 106 l~~~~~~~----l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l 180 (596)
+....++. ++.+..|++|.|.+|.+.-.--..+.. .|.++. .++.. +..+. +++
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~--~~kk~----------------~~~~~Lrv~ 162 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA--VNKKA----------------ASKPKLRVF 162 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH--HHhcc----------------CCCcceEEE
Confidence 77555543 457889999999999875222122221 122221 11110 00000 344
Q ss_pred EcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----CCcccCCCCCCcEEEcccccccc----cCCccCcCCCC
Q 044353 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNS 252 (596)
Q Consensus 181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~ 252 (596)
...+|++.......+...+...+.|+.+.+..|.|... ....|..+++|+.||+.+|.++. .+...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 44555554444444445555567888888888877532 22346778888888888888763 33445666788
Q ss_pred CcEEEccCCcccccCChhhc-----CCCCCCEEEccCCcccccCc----hhhhhhcccccEEEccCCcCc
Q 044353 253 LMSLNLRNNRLSGIIPTSFR-----NLSILKALDMGENELVGNIP----TWIGETFSRLMILNLRSNKFH 313 (596)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~ 313 (596)
|+.|++++|.+......+|. ..|.|+++.+.+|.++..-. ..+. ..+.|..|+|++|++.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRLG 311 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCccccc
Confidence 88888888888865544432 46889999999998863211 1222 3678889999999884
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.4e-11 Score=110.22 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=145.0
Q ss_pred CCCCcEEEccccc--------ccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhh
Q 044353 226 WPRLRMLNLGNNN--------FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297 (596)
Q Consensus 226 l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 297 (596)
++.|..|.+++.. +...+|-.+.-+.+|+.+.++.+.-..+. ..-..-|.|+++...+..+. ..|.-..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~-~~~~l~p- 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQ-DVPSLLP- 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccc-ccccccc-
Confidence 4567777776532 11233333444566777777766544221 11223456777776665543 2222111
Q ss_pred hcccccEEEccC-CcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353 298 TFSRLMILNLRS-NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376 (596)
Q Consensus 298 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 376 (596)
...+....... .-..|..-.....+..|+++|+++|.|+ .+..+..
T Consensus 258 -e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK------------------------------- 304 (490)
T KOG1259|consen 258 -ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK------------------------------- 304 (490)
T ss_pred -hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-------------------------------
Confidence 11122211111 1122333334455678899999999887 4443332
Q ss_pred EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456 (596)
Q Consensus 377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 456 (596)
..|.++.|++|+|.+.. +. .+..+++|+.||||+|.++ .+..+-..+-++++|.|+.|.+...
T Consensus 305 -------------L~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L- 367 (490)
T KOG1259|consen 305 -------------LAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL- 367 (490)
T ss_pred -------------hccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh-
Confidence 26679999999999973 33 3888999999999999998 5666667788999999999988733
Q ss_pred CccccCCCCCCEEecccccCcc--CCCCCCccCccccccccCCCCCCCC
Q 044353 457 PQSMSNLSFLNYLNLSNNNLNG--EIPSSTQLQSFGASSFAGNDLCGAP 503 (596)
Q Consensus 457 ~~~~~~l~~L~~L~ls~N~l~~--~~~~~~~~~~l~~~~~~~n~lc~~~ 503 (596)
+.+..+-+|..||+++|++.. .....+.++.++.+.+.+||+.+.+
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 457778899999999999964 3455578888999999999976554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=6.1e-10 Score=98.08 Aligned_cols=122 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCcEEEcccccccccCCccCc-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEE
Q 044353 228 RLRMLNLGNNNFTGSLPMSIG-ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN 306 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 306 (596)
++++|++++|.|+. +. .+. .+.+|+.|++++|.|+.+ +.+..+++|++|++++|.++ .+...+...+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 34444444444442 11 122 234444555555554432 12444455555555555554 33333322345555555
Q ss_pred ccCCcCcCcC-CcccCCCCCCcEEeCCCCcCcccCC----ccccccccCcccCC
Q 044353 307 LRSNKFHGDF-PIQLCRLGSLQILDVAYNSLSGTIP----RCINNFSAMATTDS 355 (596)
Q Consensus 307 L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~l 355 (596)
+++|++...- -..+..+++|+.|++.+|++... + ..+..+++|+.+|-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 5555544211 12344455555555555555422 2 13344555555543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.7e-10 Score=80.31 Aligned_cols=59 Identities=46% Similarity=0.669 Sum_probs=33.7
Q ss_pred cCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEeccccc
Q 044353 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN 475 (596)
Q Consensus 417 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~ 475 (596)
+|++|++++|+++...++.|.++++|++|++++|.++.+.++.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555556666666555555555555566666666665554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.6e-09 Score=78.37 Aligned_cols=61 Identities=33% Similarity=0.483 Sum_probs=57.0
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcC
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 452 (596)
++|++|++++|.++...+..|.++++|++|++++|+++...+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988889999999999999999975
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-10 Score=114.91 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=78.0
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3455566666666653 22335566677777777777763 3323556677777777777777543 345556677777
Q ss_pred ccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCc
Q 044353 282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+. .+...- .+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7777775 333322 26677777777777664333 1 355667777777777665
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=5.4e-09 Score=115.16 Aligned_cols=132 Identities=26% Similarity=0.325 Sum_probs=103.9
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCc--CccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCC
Q 044353 18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNK--LNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ 95 (596)
Q Consensus 18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 95 (596)
......++..+.+|.+.. ++.+ ..++.|++|-+..|. +. .++...|..++.|++|||++|.--+..|..++.+-+
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344677888888888863 3433 345689999999996 54 777667899999999999998766778888999999
Q ss_pred ccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc
Q 044353 96 LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ 154 (596)
Q Consensus 96 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 154 (596)
|++|++++..+. .+|..+++++.|.+|++..+.-...+ ..+...+++|++|.+....
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 999999999987 88999999999999999987654344 3444557899999886554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=4e-09 Score=116.16 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCCCEEECcCCc--ccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353 20 FKTLRALDLSNNT--VNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA 97 (596)
Q Consensus 20 l~~L~~L~ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 97 (596)
+++|++|-+..|. +.....+.|..++.|++|||++|.=-+.+|. .++.+.+|++|+++++.+. ..|..+.++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 3367777777664 4433344466677777777776654346666 6777777777777777665 5566677777777
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEcccCc
Q 044353 98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTR 129 (596)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 129 (596)
+|++..+.....++.....+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 77777665444445556667777777766543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=3.2e-09 Score=109.45 Aligned_cols=128 Identities=26% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEE
Q 044353 20 FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFL 99 (596)
Q Consensus 20 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 99 (596)
+..+..+++..|.+.. +-..+..+++|+.|++.+|+|. .+.. .+..+.+|++|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 3444444455555542 1223445555555555555554 3332 244555555555555555432 223344445555
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccc
Q 044353 100 ELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI 155 (596)
Q Consensus 100 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 155 (596)
++.+|.+.. ...+..++.|+.+++++|+++..-+.. ...+.+++.+.+.+|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 555555532 122333555556666666554322211 12344555555555554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=1.5e-09 Score=110.89 Aligned_cols=107 Identities=29% Similarity=0.390 Sum_probs=77.8
Q ss_pred cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcc-ccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 469 (596)
++.|+.|+|++|+++... .+..|+.|++|||+.|.+. .+|.. ..++ .|+.|.+++|.++.. ..+.++.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 555888888999887432 6788899999999999887 45542 2233 488999999988743 357788888999
Q ss_pred ecccccCccC--CCCCCccCccccccccCCCCCCCC
Q 044353 470 NLSNNNLNGE--IPSSTQLQSFGASSFAGNDLCGAP 503 (596)
Q Consensus 470 ~ls~N~l~~~--~~~~~~~~~l~~~~~~~n~lc~~~ 503 (596)
|+++|-+.+- ....+.+..+..+++.|||+|-.|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999987643 223355667788889999976443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.4e-09 Score=111.06 Aligned_cols=180 Identities=28% Similarity=0.332 Sum_probs=106.8
Q ss_pred CccCcCCCCCcEEEccCCcccccCChhhcCC-CCCCEEEccCCccc----------ccCchhhhhhcccccEEEccCCcC
Q 044353 244 PMSIGALNSLMSLNLRNNRLSGIIPTSFRNL-SILKALDMGENELV----------GNIPTWIGETFSRLMILNLRSNKF 312 (596)
Q Consensus 244 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~~l~~L~~L~L~~n~l 312 (596)
|-.+..+.+|+.|.+.++.+... ..+..+ .+|++|- ..|.+. |.+..... -..|...+++.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 55566778999999999888731 111111 1233332 122211 11111110 12466777777777
Q ss_pred cCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccc
Q 044353 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILN 392 (596)
Q Consensus 313 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (596)
. ....++.-++.|+.|+|++|+++.. +.+ ..++
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~L--------------------------------------------r~l~ 209 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV--DNL--------------------------------------------RRLP 209 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh--HHH--------------------------------------------Hhcc
Confidence 6 5666677777788888888877621 122 2255
Q ss_pred cccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEe
Q 044353 393 LVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLN 470 (596)
Q Consensus 393 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ 470 (596)
+|++|||++|.+. .+|. ...++. |+.|+|++|.++ ..- .+.++.+|+.||+++|-|.+.. -..++.+..|+.|.
T Consensus 210 ~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 210 KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred cccccccccchhc-cccccchhhhh-heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 6777777777776 3333 333444 888888888776 222 3677788888888888776432 13345566778888
Q ss_pred cccccCccC
Q 044353 471 LSNNNLNGE 479 (596)
Q Consensus 471 ls~N~l~~~ 479 (596)
|.||++.|.
T Consensus 286 LeGNPl~c~ 294 (1096)
T KOG1859|consen 286 LEGNPLCCA 294 (1096)
T ss_pred hcCCccccC
Confidence 888887763
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.3e-09 Score=97.37 Aligned_cols=179 Identities=17% Similarity=0.118 Sum_probs=99.0
Q ss_pred CCcEEEccCCeeeeEeC-CCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEE
Q 044353 71 QLLVFRAHGNSLVFKIN-PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYL 148 (596)
Q Consensus 71 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L 148 (596)
.|+++||++..++.... ..+..|.+|+.|++.++++..-+...+++-.+|+.|+++.+ .++......++..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666655542221 23455666777777777776666666777777777777764 45544444556666777777
Q ss_pred EcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC---CCCCcccCC
Q 044353 149 NVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS---EDIPDCWMN 225 (596)
Q Consensus 149 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~ 225 (596)
+++.|.+.......... . --++|+.|+++++.-. ..+..-...
T Consensus 266 NlsWc~l~~~~Vtv~V~----------------------------h------ise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVA----------------------------H------ISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred CchHhhccchhhhHHHh----------------------------h------hchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 77766553221110000 0 0245666666654311 001111245
Q ss_pred CCCCcEEEccccc-ccccCCccCcCCCCCcEEEccCCcccccCChh---hcCCCCCCEEEccCC
Q 044353 226 WPRLRMLNLGNNN-FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTS---FRNLSILKALDMGEN 285 (596)
Q Consensus 226 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n 285 (596)
+++|..||+++|. ++......|..++.|++|.++.|.. +.|.. +...|.|.+|+.-++
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6777777777664 3333333455667777777776643 34443 345677888877664
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.7e-07 Score=86.39 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=58.7
Q ss_pred CCCCCCEEECcCCccccc--CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC-CCCCCCC
Q 044353 19 RFKTLRALDLSNNTVNGP--IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP-NWVPPFQ 95 (596)
Q Consensus 19 ~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 95 (596)
.++.+++|||.+|.|++- +..-+.++|+|+.|+|+.|++...|.. .-..+.+|++|.|.+..+...... ....++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 577888899999988842 222356788999999999988744442 114667888888888877543333 3345667
Q ss_pred ccEEEccCCC
Q 044353 96 LAFLELRSCH 105 (596)
Q Consensus 96 L~~L~L~~n~ 105 (596)
++.|.++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 7777777663
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.1e-08 Score=91.15 Aligned_cols=178 Identities=19% Similarity=0.131 Sum_probs=98.0
Q ss_pred CCCEEECcCCccccc-CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CCCCCCCccE
Q 044353 22 TLRALDLSNNTVNGP-IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NWVPPFQLAF 98 (596)
Q Consensus 22 ~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~ 98 (596)
.|++||||+..|+.. ....+..|.+|+.|.|.++++.+.+-. .+.+-.+|+.|+++.+. ++..... .+.+++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466777777666532 223345677777777777777655544 66667777777777653 2211111 3456677777
Q ss_pred EEccCCCCCCCcchh-hcC-CCCCcEEEcccCc--CcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353 99 LELRSCHLGPRFPLW-LQS-QKKLYYLDISSTR--ISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174 (596)
Q Consensus 99 L~L~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 174 (596)
|+++.|.+....... +.+ -++|..|+++++. +...-...+...+++|.+||+++|..-
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l------------------ 326 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML------------------ 326 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc------------------
Confidence 777777654322211 111 1566677777653 221222233445677777777766421
Q ss_pred CCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcc---cCCCCCCcEEEcccc
Q 044353 175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDC---WMNWPRLRMLNLGNN 237 (596)
Q Consensus 175 ~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n 237 (596)
+ ......+-+++.|++|.++.|-. ++|.. +...|.|.+|++.++
T Consensus 327 -------------~----~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 -------------K----NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -------------C----chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 0 11112233356777777777763 33432 456677777777665
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=9.3e-08 Score=86.89 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=20.4
Q ss_pred CCCCCCccEEEccCCCCCCCcchh----hcCCCCCcEEEcccCcC
Q 044353 90 WVPPFQLAFLELRSCHLGPRFPLW----LQSQKKLYYLDISSTRI 130 (596)
Q Consensus 90 ~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~i 130 (596)
+.+|++|+..+|++|.+....|.. +++-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344555555555555554444332 23445555555555554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.2e-07 Score=84.63 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=38.3
Q ss_pred CCCCcEEEccCCeee--eEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCc
Q 044353 69 LTQLLVFRAHGNSLV--FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYD 146 (596)
Q Consensus 69 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 146 (596)
+..++.+||..|.++ ..+......+|.|++|+++.|++...+...=...++|++|-|.+..+.......+...++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 344555555555443 111112334445555555555443221111023345555555555555444444444455555
Q ss_pred EEEccccc
Q 044353 147 YLNVSGNQ 154 (596)
Q Consensus 147 ~L~l~~n~ 154 (596)
+|+++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555553
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=2.3e-07 Score=84.37 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=85.1
Q ss_pred cccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCc---cccC------hhhhhcCCCCcEEEccCCee
Q 044353 16 QLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLN---GTVS------EIHFLNLTQLLVFRAHGNSL 82 (596)
Q Consensus 16 ~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~~~------~~~~~~l~~L~~L~L~~n~l 82 (596)
.+..+..+..++||+|.|... +...+.+-.+|+..+++.--.. +.++ ..++.+|++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345578889999999988753 2334556678888888764211 1111 11677899999999999988
Q ss_pred eeEeCCC----CCCCCCccEEEccCCCCCCCcchhh-------------cCCCCCcEEEcccCcCcccCChhHHhc----
Q 044353 83 VFKINPN----WVPPFQLAFLELRSCHLGPRFPLWL-------------QSQKKLYYLDISSTRISAKIPRGFWNS---- 141 (596)
Q Consensus 83 ~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l-------------~~l~~L~~L~l~~n~i~~~~~~~~~~~---- 141 (596)
....+.. +++.+.|.+|.+.+|.+......-+ ++-|.|++.....|++. ..+...+..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 7665553 4556789999999998753222111 23456666666666654 333332221
Q ss_pred CCCCcEEEcccccc
Q 044353 142 IFQYDYLNVSGNQI 155 (596)
Q Consensus 142 l~~L~~L~l~~n~l 155 (596)
-..|+.+.+..|.|
T Consensus 184 h~~lk~vki~qNgI 197 (388)
T COG5238 184 HENLKEVKIQQNGI 197 (388)
T ss_pred hcCceeEEeeecCc
Confidence 13455555555544
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=2.4e-07 Score=75.51 Aligned_cols=58 Identities=26% Similarity=0.463 Sum_probs=26.5
Q ss_pred ccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
++.|++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+-
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 444444444444 34444444444444444444444 33444444444444444444444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=7.2e-07 Score=72.76 Aligned_cols=59 Identities=25% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
|...+|++|.+. .+|..+...++.++.+++.+|.+. .+|..+..++.|+.|+++.|++.
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 333344444443 333333333334444444444444 33444444444444444444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=7.3e-06 Score=54.02 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=14.7
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
|++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1e-05 Score=53.32 Aligned_cols=37 Identities=49% Similarity=0.751 Sum_probs=24.5
Q ss_pred CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCc
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN 58 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 58 (596)
++|++|++++|+|++ +|..+.++++|++|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467777777777774 4545777777777777777776
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=3.4e-05 Score=67.64 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCc-chhhcCCCCCcEEE
Q 044353 46 NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRF-PLWLQSQKKLYYLD 124 (596)
Q Consensus 46 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 124 (596)
+...+||++|.+. .++ .|..++.|.+|.+++|.|+.+.+..-.-+++|+.|.|.+|++.... -..+..|++|+.|.
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444555555543 333 3444555555555555554444333333444555555555443211 12244455555555
Q ss_pred cccCcCc
Q 044353 125 ISSTRIS 131 (596)
Q Consensus 125 l~~n~i~ 131 (596)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=6.9e-05 Score=63.49 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=71.8
Q ss_pred CccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCC
Q 044353 14 TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPP 93 (596)
Q Consensus 14 ~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 93 (596)
..+|..+++|+.+.+.. .+..+...+|..+++|+.+.+..+ +. .++..+|.+++.++.+.+.. .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence 45778888999999875 566677788889989999999876 55 77777899998899999975 5555566788888
Q ss_pred CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC
Q 044353 94 FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY 145 (596)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L 145 (596)
++|+.+.+..+ +.......|.++ .|+.+.+.. .+. .++...+..+++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 89999998765 555556667777 888888775 333 3555555555555
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=4.3e-05 Score=66.97 Aligned_cols=125 Identities=19% Similarity=0.084 Sum_probs=90.5
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
++|.+.++..... -=........+||++|.+... .-|..+++|..|.|++|+|+ .+....-..+++|++|.|.+|.
T Consensus 24 ~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 24 LDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccchhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcc
Confidence 4555555542111 112355678899999998753 46788999999999999998 6665455667889999999998
Q ss_pred eeeEe-CCCCCCCCCccEEEccCCCCCC---CcchhhcCCCCCcEEEcccCcC
Q 044353 82 LVFKI-NPNWVPPFQLAFLELRSCHLGP---RFPLWLQSQKKLYYLDISSTRI 130 (596)
Q Consensus 82 l~~~~-~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i 130 (596)
+.... ...+..+++|++|.+-+|.+.. .-...+..+++|+.||+.+-.-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 86222 2456788999999999998753 2233467889999999876543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=9.8e-06 Score=87.50 Aligned_cols=144 Identities=19% Similarity=0.185 Sum_probs=76.5
Q ss_pred eeecCCC-ccccCCcccc-CCCCCCEEECcCCccccc-CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEcc
Q 044353 2 LFLRRSQ-FYGHLTNQLG-RFKTLRALDLSNNTVNGP-IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH 78 (596)
Q Consensus 2 l~L~~n~-l~~~~~~~l~-~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 78 (596)
||+++.+ +...+|..++ .+|.|++|.+++-.+... +-.-..++++|++||+|+++++ .+ ..++.+++|++|.+.
T Consensus 127 LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 127 LDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMR 203 (699)
T ss_pred cCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHhcc
Confidence 4555544 2333444443 577777777776555422 1223456677777777777765 44 256677777777666
Q ss_pred CCeeee-EeCCCCCCCCCccEEEccCCCCCCCc--ch----hhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEE
Q 044353 79 GNSLVF-KINPNWVPPFQLAFLELRSCHLGPRF--PL----WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYL 148 (596)
Q Consensus 79 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 148 (596)
+=.+.. ..-..+..+++|++||++........ .. .-..+|+|+.||.|++.+.......+...-++|+.+
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 544321 11123455667777777665432211 11 112356667777766666554444444433444443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00016 Score=61.31 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=36.3
Q ss_pred ccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccc
Q 044353 222 CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR 301 (596)
Q Consensus 222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 301 (596)
+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +..+...+|.++++++.+.+.+ .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344444444444442 233333444444444444444443 3333444444444444444433 221 333333333444
Q ss_pred ccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353 302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAY 333 (596)
Q Consensus 302 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 333 (596)
++.+.+..+ +.......|.+. +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555544433 222223334443 455555443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00014 Score=72.38 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=48.4
Q ss_pred CcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCC
Q 044353 247 IGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGS 325 (596)
Q Consensus 247 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 325 (596)
+..+.+++.|++++|.++. .|. -.++|++|.++++.-...+|..+ .++|++|++++| .+. .+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 3345788888888887773 341 23468888888754333666544 257888888887 443 344 35
Q ss_pred CcEEeCCCCcC
Q 044353 326 LQILDVAYNSL 336 (596)
Q Consensus 326 L~~L~l~~n~l 336 (596)
|+.|++..+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 67777766543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00022 Score=71.08 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=26.9
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
+.+++.|++++|.++. +|. + .++|++|.+++|.--..+|+.+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4566666666665543 231 1 1246666666543222444333 135566666655
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=3.8e-05 Score=83.05 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=44.9
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc-cCCccCcCCCCCcEEEccCCcccccC------ChhhcCC
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG-SLPMSIGALNSLMSLNLRNNRLSGII------PTSFRNL 274 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l 274 (596)
+++|..||+|+.+++.. .+++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|........ -+.-..+
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 56666666666666533 345566666666665544331 11123445666666666655433211 0111235
Q ss_pred CCCCEEEccCCcccccC
Q 044353 275 SILKALDMGENELVGNI 291 (596)
Q Consensus 275 ~~L~~L~L~~n~l~~~~ 291 (596)
|+|+.||.+++.+.+.+
T Consensus 250 peLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 250 PELRFLDCSGTDINEEI 266 (699)
T ss_pred ccccEEecCCcchhHHH
Confidence 66666666665554333
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.21 E-value=1.4e-05 Score=77.51 Aligned_cols=279 Identities=15% Similarity=0.058 Sum_probs=124.0
Q ss_pred CCCEEECcCCccccc--CCccCcCCCCCCEEECcCCc-CccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CCCCCCCc
Q 044353 22 TLRALDLSNNTVNGP--IPLSLGQIANLEYLDLSNNK-LNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NWVPPFQL 96 (596)
Q Consensus 22 ~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L 96 (596)
.|+.|.+.+++=.+. .-..-.+++++++|++.++. +++..-...-..+++|++|++..|. ++..... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666666643221 11223467777777777764 3322112123456777777777642 2222111 22356777
Q ss_pred cEEEccCCC-CCCCc-chhhcCCCCCcEEEcccCc-CcccCChhHHhcCCCCcEEEcccccc-cccCCCCCCCCCCcccc
Q 044353 97 AFLELRSCH-LGPRF-PLWLQSQKKLYYLDISSTR-ISAKIPRGFWNSIFQYDYLNVSGNQI-YGGVPKFDSPSVPLITT 172 (596)
Q Consensus 97 ~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~ 172 (596)
++|+++.|. +++.. ......++.++.+.+.++. ........+...+..+.++++.++.. ++..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~------------- 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED------------- 285 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-------------
Confidence 777777765 43322 2234455666666555542 11111111112223344444434421 1100
Q ss_pred CCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC-CCCccc-CCCCCCcEEEccccc-ccccCCccC-c
Q 044353 173 PSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-DIPDCW-MNWPRLRMLNLGNNN-FTGSLPMSI-G 248 (596)
Q Consensus 173 ~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~ 248 (596)
++..-..+..|+.|+.+++.-.+ ..-.++ .+..+|+.+.+++++ ++..-...+ .
T Consensus 286 ----------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 286 ----------------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred ----------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 00000113455555555543211 111111 234556666666554 221111112 2
Q ss_pred CCCCCcEEEccCCccccc--CChhhcCCCCCCEEEccCCccc-ccCc---hhhhhhcccccEEEccCCcCc-CcCCcccC
Q 044353 249 ALNSLMSLNLRNNRLSGI--IPTSFRNLSILKALDMGENELV-GNIP---TWIGETFSRLMILNLRSNKFH-GDFPIQLC 321 (596)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~---~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 321 (596)
+.+.|+.+++..+..... ....-.+++.|+.+.++.+... +..- .........|..+.++++..+ ...-+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 345566666665543311 1222235566666666655432 1100 011113455666666666443 22333455
Q ss_pred CCCCCcEEeCCCCc
Q 044353 322 RLGSLQILDVAYNS 335 (596)
Q Consensus 322 ~l~~L~~L~l~~n~ 335 (596)
.+++|+.+++-.+.
T Consensus 424 ~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 424 ICRNLERIELIDCQ 437 (483)
T ss_pred hCcccceeeeechh
Confidence 56677777666654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00017 Score=66.11 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC--eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCC
Q 044353 44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN--SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKL 120 (596)
Q Consensus 44 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L 120 (596)
+..|+.|++.+..++ ++. .|-.+++|+.|.++.| .+.+........+++|++|++++|++.. .....+..+++|
T Consensus 42 ~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 334444444444433 222 3444555555555555 3333333333344566666666665542 112234566677
Q ss_pred cEEEcccCcCcccCC--hhHHhcCCCCcEEEccc
Q 044353 121 YYLDISSTRISAKIP--RGFWNSIFQYDYLNVSG 152 (596)
Q Consensus 121 ~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~ 152 (596)
..|++.+|..+.... ..++..+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 777777776553111 23455567777775443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00036 Score=64.05 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCC--cCccccChhhhhcCCCCcEEEccCCeeee-EeCCC
Q 044353 13 LTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNN--KLNGTVSEIHFLNLTQLLVFRAHGNSLVF-KINPN 89 (596)
Q Consensus 13 ~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 89 (596)
+......+..|+.|++.+..++.. ..|..+++|++|.+|.| ++++.++. ...++++|++|++++|++.. .....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch
Confidence 455556677777777777777643 34667788888888888 55544443 44556888888888888763 11223
Q ss_pred CCCCCCccEEEccCCCCCCCc---chhhcCCCCCcEEEcc
Q 044353 90 WVPPFQLAFLELRSCHLGPRF---PLWLQSQKKLYYLDIS 126 (596)
Q Consensus 90 ~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~ 126 (596)
...+.+|..|++.+|..+... -..|.-+++|++||-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 444556777788877655321 1234456777766543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.04 E-value=3.6e-05 Score=74.79 Aligned_cols=281 Identities=14% Similarity=0.027 Sum_probs=157.4
Q ss_pred cccCCCCCCEEECcCCc-ccccCCccC-cCCCCCCEEECcCC-cCccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CC
Q 044353 16 QLGRFKTLRALDLSNNT-VNGPIPLSL-GQIANLEYLDLSNN-KLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NW 90 (596)
Q Consensus 16 ~l~~l~~L~~L~ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 90 (596)
...+++++++|++.++. +++..-.++ ..|+.|++|+|..+ .++...-...-.++++|++++++.+. +++.... -.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 34689999999998885 332211122 35899999999985 45544333345679999999999875 3332212 23
Q ss_pred CCCCCccEEEccCCCCCCCcchhh----cCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccccccccCCCCCCC
Q 044353 91 VPPFQLAFLELRSCHLGPRFPLWL----QSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165 (596)
Q Consensus 91 ~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 165 (596)
.++..++.+.+.+|.-. ..+.+ +.+..+..+++..+ .+++.....+...+..|+.++.+++.-.+..
T Consensus 239 rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~------ 310 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE------ 310 (483)
T ss_pred ccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH------
Confidence 45566777777766421 11122 24455666665554 4555444444555677888888776421100
Q ss_pred CCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcC-CCCCCccc-CCCCCCcEEEcccccccc--
Q 044353 166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHF-SEDIPDCW-MNWPRLRMLNLGNNNFTG-- 241 (596)
Q Consensus 166 ~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~-- 241 (596)
.+...-....+|+.|-++.+.- +......+ .+++.|+.+++..+....
T Consensus 311 ----------------------------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 311 ----------------------------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred ----------------------------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 0011112256777777777652 22111112 356678888888776431
Q ss_pred cCCccCcCCCCCcEEEccCCcccccC-----ChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCc-Cc
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGII-----PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFH-GD 315 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 315 (596)
.+...-.+++.|+.+.++++...... ...-..+..|+.+.+++++....-.-.....+++|+.+++.++.-. .+
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 12222235778888888877644221 1222456778888888887532111122225778888888777432 11
Q ss_pred -CCcccCCCCCCcEEeCC
Q 044353 316 -FPIQLCRLGSLQILDVA 332 (596)
Q Consensus 316 -~~~~~~~l~~L~~L~l~ 332 (596)
+...-.++|+++..-+.
T Consensus 443 ~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 443 AISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhHHHHhhCccceehhhc
Confidence 22223456666655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00012 Score=67.35 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=77.1
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKAL 280 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 280 (596)
+.++++|+.-++++.++. ....++.|+.|.|+-|.|+...| +..|++|++|+|..|.|..... ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 357788999999887532 34678899999999999985544 7889999999999999985421 346789999999
Q ss_pred EccCCcccccCchhh----hhhcccccEEE
Q 044353 281 DMGENELVGNIPTWI----GETFSRLMILN 306 (596)
Q Consensus 281 ~L~~n~l~~~~~~~~----~~~l~~L~~L~ 306 (596)
.|..|.-.|.-+... ...+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998776655432 23577888776
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.0013 Score=69.67 Aligned_cols=111 Identities=19% Similarity=0.040 Sum_probs=60.2
Q ss_pred CCCCCEEECcCCcCccccC-hhhhhcCCCCcEEEccCC-eeeeEe----CCCCCCCCCccEEEccCCC-CCCCcchhhcC
Q 044353 44 IANLEYLDLSNNKLNGTVS-EIHFLNLTQLLVFRAHGN-SLVFKI----NPNWVPPFQLAFLELRSCH-LGPRFPLWLQS 116 (596)
Q Consensus 44 l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 116 (596)
++.|+.|.+..+.-..... ......+++|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777776663221211 124556677777777652 111011 1122344667777777666 44444444433
Q ss_pred -CCCCcEEEcccCc-CcccCChhHHhcCCCCcEEEccccc
Q 044353 117 -QKKLYYLDISSTR-ISAKIPRGFWNSIFQYDYLNVSGNQ 154 (596)
Q Consensus 117 -l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~ 154 (596)
+++|+.|.+.++. +++..-..+...+++|++|+++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 6677777766665 5555555555666677777777654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.00057 Score=63.09 Aligned_cols=82 Identities=24% Similarity=0.294 Sum_probs=37.3
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC--cccCCCCCCcEE
Q 044353 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP--IQLCRLGSLQIL 329 (596)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 329 (596)
+.++|+..++.+.++ .....|+.|++|.|+-|+|+ ++.... .|.+|+.|+|+.|.|.. +. ..+.++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~--rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQ--RCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHH--HHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 344444555544433 22334555555555555554 332211 34555555555554442 11 123455555555
Q ss_pred eCCCCcCccc
Q 044353 330 DVAYNSLSGT 339 (596)
Q Consensus 330 ~l~~n~l~~~ 339 (596)
.|..|+..+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 5555554433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.53 E-value=0.0018 Score=68.64 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCccEEeCcCCcCCCC--CCcccCCCCCCcEEEcccc-cccccC----CccCcCCCCCcEEEccCCc-ccccCChhhc-
Q 044353 202 SKNIEFLKLSKNHFSED--IPDCWMNWPRLRMLNLGNN-NFTGSL----PMSIGALNSLMSLNLRNNR-LSGIIPTSFR- 272 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~- 272 (596)
++.++.+.+..+.-... .......++.|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555422211 1122344556666666552 111011 1122234555555555555 3333222222
Q ss_pred CCCCCCEEEccCCc-ccccCchhhhhhcccccEEEccCCc
Q 044353 273 NLSILKALDMGENE-LVGNIPTWIGETFSRLMILNLRSNK 311 (596)
Q Consensus 273 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 311 (596)
.+++|+.|.+.++. +++..-..+...++.|++|+++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25555555555444 3333333344445555555555543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.014 Score=31.86 Aligned_cols=16 Identities=56% Similarity=0.937 Sum_probs=7.3
Q ss_pred CCEEECcCCcCccccCh
Q 044353 47 LEYLDLSNNKLNGTVSE 63 (596)
Q Consensus 47 L~~L~Ls~n~i~~~~~~ 63 (596)
|++|||++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 444444444444 4443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.013 Score=31.98 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=5.6
Q ss_pred CCEEECCCCcCc
Q 044353 442 IESLDFSANQLS 453 (596)
Q Consensus 442 L~~L~Ls~N~l~ 453 (596)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.49 E-value=0.00031 Score=72.78 Aligned_cols=190 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred ccEEEccCCCCCCCcc----hhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccc
Q 044353 96 LAFLELRSCHLGPRFP----LWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLIT 171 (596)
Q Consensus 96 L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 171 (596)
+..|.|.+|.+..... ..+.....|+.|++++|.+.+.....+...++.. .+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~------~~~l---------------- 146 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP------QCLL---------------- 146 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc------hHHH----------------
Confidence 6667777777654333 3345567777777777777644434343332111 0000
Q ss_pred cCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----CCcc----cCCCCCCcEEEcccccccc--
Q 044353 172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDC----WMNWPRLRMLNLGNNNFTG-- 241 (596)
Q Consensus 172 ~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~----~~~l~~L~~L~l~~n~l~~-- 241 (596)
.++++..+.+++.....+...+.....++.++++.|.+... .+.. +....++++|.+++|.++.
T Consensus 147 ------~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~ 220 (478)
T KOG4308|consen 147 ------QTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS 220 (478)
T ss_pred ------HHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH
Confidence 22333334444444444445555566777888887776311 1111 2234456666666665541
Q ss_pred --cCCccCcCCCC-CcEEEccCCccccc----CChhhcCC-CCCCEEEccCCcccccCchhhhh---hcccccEEEccCC
Q 044353 242 --SLPMSIGALNS-LMSLNLRNNRLSGI----IPTSFRNL-SILKALDMGENELVGNIPTWIGE---TFSRLMILNLRSN 310 (596)
Q Consensus 242 --~~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~---~l~~L~~L~L~~n 310 (596)
.....+...++ +..|++..|.+.+. ....+..+ +.++++++..|.+++....+..+ .++.++++.+++|
T Consensus 221 c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 221 CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 11112222333 44455555555432 11222223 34455555555554333222221 2334444445444
Q ss_pred cCc
Q 044353 311 KFH 313 (596)
Q Consensus 311 ~l~ 313 (596)
.+.
T Consensus 301 ~l~ 303 (478)
T KOG4308|consen 301 PLT 303 (478)
T ss_pred ccc
Confidence 443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.49 E-value=0.00052 Score=71.10 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.1
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE 217 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 217 (596)
..++++.|.++......+...+..++.++.+.++.|.+..
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4566677777766666666666667888899998887763
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.22 E-value=0.094 Score=26.42 Aligned_cols=12 Identities=75% Similarity=0.985 Sum_probs=4.1
Q ss_pred CCCEEECcCCcC
Q 044353 46 NLEYLDLSNNKL 57 (596)
Q Consensus 46 ~L~~L~Ls~n~i 57 (596)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.08 E-value=0.0063 Score=54.87 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=73.0
Q ss_pred cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEe
Q 044353 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 470 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 470 (596)
....+.||++.|++. .....|+-++.|..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 556789999999887 55566788889999999999998 88888999999999999999998 7788899999999999
Q ss_pred cccccCc
Q 044353 471 LSNNNLN 477 (596)
Q Consensus 471 ls~N~l~ 477 (596)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999864
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.75 E-value=0.16 Score=28.81 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=13.3
Q ss_pred CCCCEEECcCCcCccccChhhhh
Q 044353 45 ANLEYLDLSNNKLNGTVSEIHFL 67 (596)
Q Consensus 45 ~~L~~L~Ls~n~i~~~~~~~~~~ 67 (596)
++|++|+|++|+|+ .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666665 55554443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.75 E-value=0.16 Score=28.81 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=13.3
Q ss_pred CCCCEEECcCCcCccccChhhhh
Q 044353 45 ANLEYLDLSNNKLNGTVSEIHFL 67 (596)
Q Consensus 45 ~~L~~L~Ls~n~i~~~~~~~~~~ 67 (596)
++|++|+|++|+|+ .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666665 55554443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.85 E-value=0.2 Score=28.48 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=11.0
Q ss_pred CCCCEEECCCCcCcccCCccc
Q 044353 440 RSIESLDFSANQLSGQIPQSM 460 (596)
Q Consensus 440 ~~L~~L~Ls~N~l~~~~~~~~ 460 (596)
++|+.|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666654433333
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.85 E-value=0.2 Score=28.48 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=11.0
Q ss_pred CCCCEEECCCCcCcccCCccc
Q 044353 440 RSIESLDFSANQLSGQIPQSM 460 (596)
Q Consensus 440 ~~L~~L~Ls~N~l~~~~~~~~ 460 (596)
++|+.|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666654433333
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.79 E-value=0.083 Score=46.96 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEccCCccccc-CchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEE
Q 044353 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGN-IPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQIL 329 (596)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 329 (596)
.++.++-++..|..+.-+.+.+++.++.|.+.+++-.+. .-..+....++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555555555445555555555555555542211 11111112345555555555 3333222334444555555
Q ss_pred eCC
Q 044353 330 DVA 332 (596)
Q Consensus 330 ~l~ 332 (596)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 444
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=0.085 Score=46.88 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=58.6
Q ss_pred cccEEEccCCcccccCCccccCcccCCeeeccCccC-cccCCcccc-CCCCCCEEECCCC-cCcccCCccccCCCCCCEE
Q 044353 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLF-TGRIPDNIG-VMRSIESLDFSAN-QLSGQIPQSMSNLSFLNYL 469 (596)
Q Consensus 393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 469 (596)
.++.+|-++..+..+--+-+..++.++.|.+.+|.- .+.-.+.++ ..++|+.|+|++| +||.---..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 378888889888877777788888899999888852 111111121 3478999999977 5665444566777888888
Q ss_pred ecccccC
Q 044353 470 NLSNNNL 476 (596)
Q Consensus 470 ~ls~N~l 476 (596)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7776443
No 83
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=86.29 E-value=0.62 Score=29.40 Aligned_cols=29 Identities=10% Similarity=-0.042 Sum_probs=15.1
Q ss_pred cceeeehhhhHHHHHHHHHHhhhhhhccc
Q 044353 532 DWLLYISMALGFVVGFWCFIGPLLIKRRW 560 (596)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (596)
...+.+++++.+++++++++++++++||+
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHHhheEEec
Confidence 33445556666665555555555544443
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=83.34 E-value=0.65 Score=38.00 Aligned_cols=31 Identities=19% Similarity=0.070 Sum_probs=18.6
Q ss_pred ceeeehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353 533 WLLYISMALGFVVGFWCFIGPLLIKRRWRYK 563 (596)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (596)
...++++++|++++++.++++++|+.||++|
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777777766666665444333
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=81.84 E-value=0.71 Score=56.81 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=32.4
Q ss_pred ECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353 446 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484 (596)
Q Consensus 446 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 484 (596)
||++|+|+.+.+..|..+++|+.|+|++|+|.|.|.-.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 578888887777788888889999999999988887653
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.01 E-value=0.045 Score=49.57 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCcc
Q 044353 410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 489 (596)
Q Consensus 410 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l 489 (596)
..+......+.||++.|++- .....|+-++.|..||++.|++. -.|..+.....+..+++.+|..+...-+..+.+..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 45667788999999999987 55666888999999999999998 67888888888999999999988776677778888
Q ss_pred ccccccCCC
Q 044353 490 GASSFAGND 498 (596)
Q Consensus 490 ~~~~~~~n~ 498 (596)
+.....+|+
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 777777776
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.77 E-value=0.75 Score=47.41 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=17.7
Q ss_pred cccCCeeeccCccCcccC--CccccCCCCCCEEECCCC
Q 044353 415 LQGLQSLNLSHNLFTGRI--PDNIGVMRSIESLDFSAN 450 (596)
Q Consensus 415 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N 450 (596)
.+.+..++|++|++.... ...-...|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345566667777664211 111122355666666666
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.75 E-value=0.59 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=6.7
Q ss_pred CCCcEEEcccCcCcc
Q 044353 118 KKLYYLDISSTRISA 132 (596)
Q Consensus 118 ~~L~~L~l~~n~i~~ 132 (596)
++|+.|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 89
>PF15102 TMEM154: TMEM154 protein family
Probab=79.86 E-value=1.6 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=9.3
Q ss_pred HHHHHhhhhhhccchhhh
Q 044353 547 FWCFIGPLLIKRRWRYKY 564 (596)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~ 564 (596)
+++++++++++||||.|.
T Consensus 72 Ll~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHheeEEeecccCC
Confidence 344444445556666554
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.95 E-value=2.1 Score=24.36 Aligned_cols=14 Identities=64% Similarity=0.845 Sum_probs=8.1
Q ss_pred CCCCEEECcCCcCc
Q 044353 45 ANLEYLDLSNNKLN 58 (596)
Q Consensus 45 ~~L~~L~Ls~n~i~ 58 (596)
.+|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.99 E-value=9.7 Score=38.81 Aligned_cols=137 Identities=18% Similarity=0.033 Sum_probs=63.1
Q ss_pred CccEEeCcCCcCCCCCCcccCCC---CCCcEEEccccccc---ccCCccCcCCCCCcEEEccCCcccc----cC----Ch
Q 044353 204 NIEFLKLSKNHFSEDIPDCWMNW---PRLRMLNLGNNNFT---GSLPMSIGALNSLMSLNLRNNRLSG----II----PT 269 (596)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~----~~----~~ 269 (596)
.+++++++.|.....+|.....+ ..++.++.+...++ ..-+-.+..-+++...+++.|..+. +. -.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46777888877776666543222 24556666655544 1222223334566666666665331 11 12
Q ss_pred hhcCCCCCCEEEccCCcccccCchhhhhhc-----ccccEEEccCCcCcC-cCCcccCCCCCCcEEeCCCCcCcccCC
Q 044353 270 SFRNLSILKALDMGENELVGNIPTWIGETF-----SRLMILNLRSNKFHG-DFPIQLCRLGSLQILDVAYNSLSGTIP 341 (596)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 341 (596)
.|..-+++ +|++..+....+-+..+.-.+ ..=-++++..|...+ ..-++-.+=..+++|....|...+..-
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccc
Confidence 33444555 566655544322221111000 011134444443331 111111111247777777777765443
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.88 E-value=4.7 Score=31.67 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=11.9
Q ss_pred cceeeehhhhHHHHHHHHHHhhhhh
Q 044353 532 DWLLYISMALGFVVGFWCFIGPLLI 556 (596)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (596)
....++++++++++++.+++++++|
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHHhh
Confidence 3355666666555444333333333
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.75 E-value=4.1 Score=23.10 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=7.6
Q ss_pred CCCEEECCCCcCc
Q 044353 441 SIESLDFSANQLS 453 (596)
Q Consensus 441 ~L~~L~Ls~N~l~ 453 (596)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555666666655
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.46 E-value=3.7 Score=23.75 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=8.0
Q ss_pred CCCcEEEcccCcCcc
Q 044353 118 KKLYYLDISSTRISA 132 (596)
Q Consensus 118 ~~L~~L~l~~n~i~~ 132 (596)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 345555555555543
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.36 E-value=2.5 Score=35.76 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=6.2
Q ss_pred eeehhhhHHHHHH
Q 044353 535 LYISMALGFVVGF 547 (596)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (596)
+++++++|+.+.+
T Consensus 50 IVIGvVVGVGg~i 62 (154)
T PF04478_consen 50 IVIGVVVGVGGPI 62 (154)
T ss_pred EEEEEEecccHHH
Confidence 4555555544333
No 96
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=65.06 E-value=6.8 Score=35.24 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=14.3
Q ss_pred cceeeehhhhHHHHHHHHHHhhhhhh
Q 044353 532 DWLLYISMALGFVVGFWCFIGPLLIK 557 (596)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (596)
+..+++++++|+++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44566666666655555544444444
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=63.90 E-value=5.7 Score=24.71 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=4.3
Q ss_pred hhhhHHHHHH
Q 044353 538 SMALGFVVGF 547 (596)
Q Consensus 538 ~~~~~~~~~~ 547 (596)
++++++++++
T Consensus 7 aIIv~V~vg~ 16 (38)
T PF02439_consen 7 AIIVAVVVGM 16 (38)
T ss_pred hHHHHHHHHH
Confidence 3344444443
No 98
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=59.82 E-value=5 Score=38.82 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=5.4
Q ss_pred HHHHHhhhhhhccc
Q 044353 547 FWCFIGPLLIKRRW 560 (596)
Q Consensus 547 ~~~~~~~~~~~~~~ 560 (596)
+++++..++++|||
T Consensus 270 LIMvIIYLILRYRR 283 (299)
T PF02009_consen 270 LIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333344443
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.82 E-value=6.2 Score=41.00 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=6.3
Q ss_pred CCEEEccCCccc
Q 044353 277 LKALDMGENELV 288 (596)
Q Consensus 277 L~~L~L~~n~l~ 288 (596)
|++|-+.||++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 455555555553
No 100
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.37 E-value=30 Score=35.53 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCcEEEcccccccccCC---ccCcCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEccCCcc
Q 044353 228 RLRMLNLGNNNFTGSLP---MSIGALNSLMSLNLRNNRLSGI----IPTSFRNLSILKALDMGENEL 287 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 287 (596)
-+..+.++.|.+..... ....+-+.+..|++++|..... +|....--..++.+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 35666777776652111 2233456788888888876633 333333334455555555443
No 101
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=49.60 E-value=5 Score=33.62 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=5.9
Q ss_pred HHHHHhhhhhhcc
Q 044353 547 FWCFIGPLLIKRR 559 (596)
Q Consensus 547 ~~~~~~~~~~~~~ 559 (596)
+++.++++|+|++
T Consensus 23 l~cgiGcvwhwkh 35 (158)
T PF11770_consen 23 LLCGIGCVWHWKH 35 (158)
T ss_pred HHHhcceEEEeec
Confidence 3344444555443
No 102
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=47.63 E-value=15 Score=36.06 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=8.8
Q ss_pred eehhhhHHHHHHHHHHhhhhh
Q 044353 536 YISMALGFVVGFWCFIGPLLI 556 (596)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~ 556 (596)
++.+++|++++.+++++++.|
T Consensus 272 ~vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443333333333
No 103
>PTZ00046 rifin; Provisional
Probab=46.49 E-value=12 Score=36.94 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=14.1
Q ss_pred eehhhhHHHHHHHHHHhhhhhhccchhhhh
Q 044353 536 YISMALGFVVGFWCFIGPLLIKRRWRYKYC 565 (596)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (596)
++.+++.++++++.|+..++.+|||+.+-+
T Consensus 318 iaSiiAIvVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 318 IASIVAIVVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 333333344444444544555555555543
No 104
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=46.16 E-value=12 Score=36.75 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=14.2
Q ss_pred eehhhhHHHHHHHHHHhhhhhhccchhhhh
Q 044353 536 YISMALGFVVGFWCFIGPLLIKRRWRYKYC 565 (596)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (596)
++.+++.++++++.|+..++.+|||+.+-+
T Consensus 313 iaSiIAIvvIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 333334344444444555555555555543
No 105
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.44 E-value=13 Score=35.04 Aligned_cols=12 Identities=17% Similarity=-0.155 Sum_probs=4.5
Q ss_pred HHHHHHhhhhhh
Q 044353 546 GFWCFIGPLLIK 557 (596)
Q Consensus 546 ~~~~~~~~~~~~ 557 (596)
++.||+++++.|
T Consensus 270 il~vvliiLYiW 281 (295)
T TIGR01478 270 ILTVVLIILYIW 281 (295)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 106
>PTZ00370 STEVOR; Provisional
Probab=45.09 E-value=14 Score=34.93 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=2.9
Q ss_pred HHHHhhhh
Q 044353 548 WCFIGPLL 555 (596)
Q Consensus 548 ~~~~~~~~ 555 (596)
.||+++++
T Consensus 268 ~vvliilY 275 (296)
T PTZ00370 268 AVVLIILY 275 (296)
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=44.24 E-value=16 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=13.3
Q ss_pred HHHhhhhhhccchhhhhhhhhh
Q 044353 549 CFIGPLLIKRRWRYKYCHFLDR 570 (596)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~ 570 (596)
+++++.+...-+++.|++..++
T Consensus 14 ~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 14 GLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHhhccccccccCC
Confidence 3444444455667777777766
No 108
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=43.09 E-value=29 Score=36.89 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=19.0
Q ss_pred CCCcccceeeehhhhHHHHHHHHHHhhhh
Q 044353 527 DEDGVDWLLYISMALGFVVGFWCFIGPLL 555 (596)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (596)
.....+.|+++++++.+++++++++++.+
T Consensus 263 ~s~~~NlWII~gVlvPv~vV~~Iiiil~~ 291 (684)
T PF12877_consen 263 KSPPNNLWIIAGVLVPVLVVLLIIIILYW 291 (684)
T ss_pred CCCCCCeEEEehHhHHHHHHHHHHHHHHH
Confidence 34456788988888777766655544433
No 109
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=41.55 E-value=16 Score=27.19 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=4.5
Q ss_pred hhhHHHHHHHHH
Q 044353 539 MALGFVVGFWCF 550 (596)
Q Consensus 539 ~~~~~~~~~~~~ 550 (596)
+++|++++++++
T Consensus 6 ~~~g~~~ll~~v 17 (75)
T PF14575_consen 6 IIVGVLLLLVLV 17 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334433333333
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.81 E-value=21 Score=19.95 Aligned_cols=13 Identities=46% Similarity=0.470 Sum_probs=9.2
Q ss_pred CCCCCEEECcCCc
Q 044353 44 IANLEYLDLSNNK 56 (596)
Q Consensus 44 l~~L~~L~Ls~n~ 56 (596)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677777777774
No 111
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=37.47 E-value=29 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=16.5
Q ss_pred eeeehhhhHHHHHHHHHHhhhhhhccch
Q 044353 534 LLYISMALGFVVGFWCFIGPLLIKRRWR 561 (596)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (596)
|..++++.+++++++..+.-++|+++..
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~d 60 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKED 60 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhHh
Confidence 4555666666666666665566665443
No 112
>PF15050 SCIMP: SCIMP protein
Probab=34.85 E-value=21 Score=28.66 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=4.0
Q ss_pred ccchhhhh
Q 044353 558 RRWRYKYC 565 (596)
Q Consensus 558 ~~~~~~~~ 565 (596)
.||..|..
T Consensus 31 cR~~lRqG 38 (133)
T PF15050_consen 31 CRWQLRQG 38 (133)
T ss_pred HHHHHHcc
Confidence 45555543
No 113
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=34.42 E-value=32 Score=21.74 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=4.4
Q ss_pred hhhccchhhh
Q 044353 555 LIKRRWRYKY 564 (596)
Q Consensus 555 ~~~~~~~~~~ 564 (596)
+.+++|..|.
T Consensus 28 ~iYRKw~aRk 37 (43)
T PF08114_consen 28 FIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHH
Confidence 3444454443
No 114
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=34.15 E-value=26 Score=26.82 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=12.5
Q ss_pred ceeeehhhhHHHHHHHHHHhhhhhhc-cch
Q 044353 533 WLLYISMALGFVVGFWCFIGPLLIKR-RWR 561 (596)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 561 (596)
.|-+++.+.|+++++++ +++++.++ ||+
T Consensus 41 yWpyLA~GGG~iLilIi-i~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILII-IALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHH-HHHHHHhhhhhh
Confidence 44455445455444444 33344433 444
No 115
>PHA03265 envelope glycoprotein D; Provisional
Probab=34.10 E-value=27 Score=33.97 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhhccchhhhh
Q 044353 543 FVVGFWCFIGPLLIKRRWRYKYC 565 (596)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~ 565 (596)
.++++++|.+++++++|+|+..+
T Consensus 357 ~i~glv~vg~il~~~~rr~k~~~ 379 (402)
T PHA03265 357 GIAGLVLVGVILYVCLRRKKELK 379 (402)
T ss_pred chhhhhhhhHHHHHHhhhhhhhh
Confidence 34566677777777766655443
No 116
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=33.97 E-value=19 Score=29.38 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=0.0
Q ss_pred hhhhhhcc
Q 044353 552 GPLLIKRR 559 (596)
Q Consensus 552 ~~~~~~~~ 559 (596)
+++++++.
T Consensus 97 g~lv~rrc 104 (129)
T PF12191_consen 97 GFLVWRRC 104 (129)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 33444443
No 117
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.82 E-value=28 Score=26.16 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=2.8
Q ss_pred HHHHhhhhhhcc
Q 044353 548 WCFIGPLLIKRR 559 (596)
Q Consensus 548 ~~~~~~~~~~~~ 559 (596)
++|+.+++..|+
T Consensus 20 IvvW~iv~ieYr 31 (81)
T PF00558_consen 20 IVVWTIVYIEYR 31 (81)
T ss_dssp HHHHHHH-----
T ss_pred HHHHHHHHHHHH
Confidence 334444333333
No 118
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.22 E-value=15 Score=37.98 Aligned_cols=15 Identities=0% Similarity=-0.164 Sum_probs=0.0
Q ss_pred hhccceeEEEehhHH
Q 044353 570 RLWDGCFVRKCYQIF 584 (596)
Q Consensus 570 ~~~~~~~~~~~~~~~ 584 (596)
......|..+.-+|.
T Consensus 390 ~~~~~~YtsLPtNE~ 404 (439)
T PF02480_consen 390 NPFSPVYTSLPTNEP 404 (439)
T ss_dssp ---------------
T ss_pred CcCCCccccCCCCCc
Confidence 334455655555554
No 119
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=32.19 E-value=16 Score=25.95 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=0.4
Q ss_pred hhhccch
Q 044353 555 LIKRRWR 561 (596)
Q Consensus 555 ~~~~~~~ 561 (596)
+|+.|++
T Consensus 33 iyR~rkk 39 (64)
T PF01034_consen 33 IYRMRKK 39 (64)
T ss_dssp ----S--
T ss_pred HHHHHhc
Confidence 3333433
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.57 E-value=30 Score=28.49 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=17.7
Q ss_pred cccceeeehhhhHHHHHHHHHHhhhhhhccchhhhh
Q 044353 530 GVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYC 565 (596)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (596)
....++++++++|+ +++++++.+++.++|++..--
T Consensus 64 ~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 64 PAIIGIIFGVMAGV-IGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS------
T ss_pred cceeehhHHHHHHH-HHHHHHHHHHHHHHhccCCCC
Confidence 34445555555555 555567777778777777653
No 121
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=28.58 E-value=41 Score=27.99 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHhhhhhh
Q 044353 538 SMALGFVVGFWCFIGPLLIK 557 (596)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~ 557 (596)
.+.+++++.++++++..+++
T Consensus 33 tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333
No 122
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.47 E-value=24 Score=26.89 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhhhcc-ceeEEEehhHH
Q 044353 546 GFWCFIGPLLIKRRWRYKYCHFLDRLWD-GCFVRKCYQIF 584 (596)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 584 (596)
+.++++++++..+.|..|-.-.+.|+++ +.=..++|.+-
T Consensus 43 ~~lvaVg~~YL~y~~fLkDlIlv~KAkrqrsTeEigFG~t 82 (91)
T PF01708_consen 43 FTLVAVGCLYLAYTWFLKDLILVLKAKRQRSTEEIGFGNT 82 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHHhheeeeccCCceeeeeeCCC
Confidence 3444555667777888888888888776 44455666543
No 123
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=27.19 E-value=47 Score=28.49 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=7.2
Q ss_pred hhhhccchhhhhhhhh
Q 044353 554 LLIKRRWRYKYCHFLD 569 (596)
Q Consensus 554 ~~~~~~~~~~~~~~~~ 569 (596)
..++++++.+|++.-.
T Consensus 40 ~~~r~~~~~~yrr~Al 55 (146)
T PF14316_consen 40 RLWRRWRRNRYRREAL 55 (146)
T ss_pred HHHHHHHccHHHHHHH
Confidence 3344444445554433
No 124
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=26.83 E-value=99 Score=28.05 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.9
Q ss_pred eeeehhhhH
Q 044353 534 LLYISMALG 542 (596)
Q Consensus 534 ~~~~~~~~~ 542 (596)
.++..+.+|
T Consensus 101 ~lI~lv~~g 109 (202)
T PF06365_consen 101 TLIALVTSG 109 (202)
T ss_pred EEEehHHhh
Confidence 344444444
No 125
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.22 E-value=39 Score=28.54 Aligned_cols=29 Identities=7% Similarity=0.288 Sum_probs=22.3
Q ss_pred ehhhhHHHHHHHHHHhhhhhhccchhhhh
Q 044353 537 ISMALGFVVGFWCFIGPLLIKRRWRYKYC 565 (596)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (596)
+++++|+.+.++++++.+=..++|+++..
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr~~ 38 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHRDS 38 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeeccCc
Confidence 45567777777888888888899999873
No 126
>PRK14762 membrane protein; Provisional
Probab=26.06 E-value=56 Score=18.13 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=10.6
Q ss_pred ehhhhHHHHHHHHHHhhh
Q 044353 537 ISMALGFVVGFWCFIGPL 554 (596)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~ 554 (596)
+.+.+.++++++++.+++
T Consensus 6 w~i~iifligllvvtgvf 23 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666666654
No 127
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.99 E-value=34 Score=33.01 Aligned_cols=27 Identities=33% Similarity=0.170 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHhhhhhhccchhhhhh
Q 044353 540 ALGFVVGFWCFIGPLLIKRRWRYKYCH 566 (596)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (596)
++|++++++++.+++.+.+|+|.+|..
T Consensus 237 ALG~v~ll~l~Gii~~~~~r~~~~~~~ 263 (281)
T PF12768_consen 237 ALGTVFLLVLIGIILAYIRRRRQGYVP 263 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcC
Confidence 333333333333334444455455543
No 128
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.14 E-value=44 Score=42.29 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=24.1
Q ss_pred ECcCCcccccCCccCcCCCCCCEEECcCCcCc
Q 044353 27 DLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN 58 (596)
Q Consensus 27 ~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 58 (596)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57778887766677777888888888877664
No 129
>PTZ00370 STEVOR; Provisional
Probab=24.95 E-value=43 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.056 Sum_probs=15.2
Q ss_pred eeehhhhHHHHHHHHHHhhhhhhccch
Q 044353 535 LYISMALGFVVGFWCFIGPLLIKRRWR 561 (596)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (596)
.++++++.+++++++++-+++|+||++
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444445556666666667666543
No 130
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=24.80 E-value=39 Score=30.46 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=11.0
Q ss_pred eeeehhhhHHHHHHHHHHhhhhhh
Q 044353 534 LLYISMALGFVVGFWCFIGPLLIK 557 (596)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~ 557 (596)
+..++|++.+++++++++++.++.
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhhe
Confidence 344455555555544444433333
No 131
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.69 E-value=25 Score=33.95 Aligned_cols=20 Identities=20% Similarity=-0.297 Sum_probs=0.0
Q ss_pred HHHhhhhhhccchhhhhhhh
Q 044353 549 CFIGPLLIKRRWRYKYCHFL 568 (596)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~ 568 (596)
+++++.++++|||++-+..+
T Consensus 161 IA~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 161 IAGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp --------------------
T ss_pred HHHHHHHHhhhhhhcccccc
Confidence 33444445555555555543
No 132
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.68 E-value=57 Score=31.76 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=22.2
Q ss_pred eehhhhHHHHHHHHHHhhhhhhccchhhhhhhh
Q 044353 536 YISMALGFVVGFWCFIGPLLIKRRWRYKYCHFL 568 (596)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (596)
..++++.+++++++|+++++.+.-||+|.++.+
T Consensus 255 ~t~I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 255 TTAIIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556666667777777777888887775443
No 133
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.39 E-value=1e+02 Score=27.44 Aligned_cols=6 Identities=0% Similarity=0.208 Sum_probs=2.4
Q ss_pred Eecccc
Q 044353 469 LNLSNN 474 (596)
Q Consensus 469 L~ls~N 474 (596)
.|..++
T Consensus 9 ~d~~g~ 14 (179)
T PF13908_consen 9 YDVMGQ 14 (179)
T ss_pred ecCCCC
Confidence 344443
No 134
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.32 E-value=43 Score=24.08 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=2.2
Q ss_pred HHHHHH
Q 044353 542 GFVVGF 547 (596)
Q Consensus 542 ~~~~~~ 547 (596)
++++|+
T Consensus 27 ~f~~G~ 32 (68)
T PF06305_consen 27 AFLLGA 32 (68)
T ss_pred HHHHHH
Confidence 333333
No 135
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.01 E-value=45 Score=31.69 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=15.0
Q ss_pred eeehhhhHHHHHHHHHHhhhhhhccch
Q 044353 535 LYISMALGFVVGFWCFIGPLLIKRRWR 561 (596)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (596)
.++++++.+++++++++-+++|+||++
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444455555556666666666643
No 136
>PRK00523 hypothetical protein; Provisional
Probab=23.98 E-value=54 Score=23.95 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=8.3
Q ss_pred HHHHHhhhhhhccchhhh
Q 044353 547 FWCFIGPLLIKRRWRYKY 564 (596)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~ 564 (596)
++.+++.+++.|++-.+|
T Consensus 16 i~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 16 IVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445555554444
No 137
>PRK01844 hypothetical protein; Provisional
Probab=21.96 E-value=65 Score=23.56 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=7.0
Q ss_pred HHhhhhhhccchhhh
Q 044353 550 FIGPLLIKRRWRYKY 564 (596)
Q Consensus 550 ~~~~~~~~~~~~~~~ 564 (596)
+++.+++.|++-.+|
T Consensus 18 ~~~Gff~ark~~~k~ 32 (72)
T PRK01844 18 VALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455554444
No 138
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.52 E-value=49 Score=28.29 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=13.6
Q ss_pred ccceeeehhhhHHHHHHHHH
Q 044353 531 VDWLLYISMALGFVVGFWCF 550 (596)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~ 550 (596)
..++.+++++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~l 69 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILAL 69 (154)
T ss_pred EEEEEEecccHHHHHHHHHh
Confidence 46777888887777665443
No 139
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=20.38 E-value=57 Score=24.30 Aligned_cols=32 Identities=13% Similarity=-0.163 Sum_probs=16.8
Q ss_pred ceeeehhhhHHHHHHHHHHhhhhhhccchhhh
Q 044353 533 WLLYISMALGFVVGFWCFIGPLLIKRRWRYKY 564 (596)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (596)
...+++++.+=+++.++++++++++-|.++|-
T Consensus 33 ~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~ 64 (79)
T PF07213_consen 33 PGLLAGIVAADAVLTLLIVLVVYYCARPRRRP 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 34556666555555555555555555544443
No 140
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.34 E-value=76 Score=27.89 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=13.4
Q ss_pred eeehhhhHHHHHHHHHHhhhhhhcc
Q 044353 535 LYISMALGFVVGFWCFIGPLLIKRR 559 (596)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (596)
+-+.|++|+++|.++.+.+.+..+|
T Consensus 25 F~vSm~iGLviG~li~~LltwlSRR 49 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWLSRR 49 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566666666555555444433
No 141
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=20.09 E-value=58 Score=29.61 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=5.6
Q ss_pred CCCEEecccc
Q 044353 465 FLNYLNLSNN 474 (596)
Q Consensus 465 ~L~~L~ls~N 474 (596)
..+++++.+|
T Consensus 128 dIQ~i~IgeC 137 (226)
T PHA02662 128 DVQTLDLGDC 137 (226)
T ss_pred eeeeeecccc
Confidence 4556666554
Done!