Query 044353
Match_columns 596
No_of_seqs 382 out of 4189
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-59 1.1E-63 519.7 38.0 496 2-511 205-752 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-53 4E-58 479.9 36.9 486 1-504 28-565 (844)
3 3rgz_A Protein brassinosteroid 100.0 3.8E-53 1.3E-57 471.0 35.3 470 2-502 156-719 (768)
4 3t6q_A CD180 antigen; protein- 100.0 5E-50 1.7E-54 436.0 39.2 489 1-503 37-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-49 2.3E-53 432.9 39.5 497 1-503 29-626 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3E-48 1E-52 422.0 38.0 463 1-504 36-563 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.3E-48 7.9E-53 422.9 35.8 447 1-483 61-566 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-47 2.7E-51 416.4 40.6 481 1-482 53-627 (680)
9 3j0a_A TOLL-like receptor 5; m 100.0 7E-48 2.4E-52 433.0 31.3 451 1-483 52-566 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 5.5E-46 1.9E-50 401.4 34.9 444 1-484 32-538 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-46 1.3E-50 405.5 33.2 448 1-484 60-565 (606)
12 4eco_A Uncharacterized protein 100.0 7.3E-46 2.5E-50 403.1 26.8 410 2-479 86-602 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 4.1E-44 1.4E-48 386.8 35.2 458 3-504 13-536 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 2.2E-44 7.6E-49 397.5 28.0 429 1-498 327-862 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-44 1.6E-48 384.5 29.6 443 1-482 30-515 (549)
16 4eco_A Uncharacterized protein 100.0 1.7E-43 5.7E-48 384.5 26.6 426 21-500 81-601 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3E-43 1E-47 378.1 28.2 454 3-503 11-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 3E-43 1E-47 375.4 25.9 454 1-502 4-484 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-41 9.9E-46 369.4 36.5 449 1-483 56-586 (635)
20 3v47_A TOLL-like receptor 5B a 100.0 1.2E-41 4E-46 356.9 30.9 389 2-486 15-417 (455)
21 4ecn_A Leucine-rich repeat pro 100.0 3.9E-42 1.3E-46 379.7 28.6 426 21-499 323-839 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-43 7.5E-48 376.4 16.5 436 1-483 25-487 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-39 3.7E-44 356.9 35.1 460 12-503 45-584 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-40 1E-44 355.2 25.4 446 1-484 35-517 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.1E-38 1E-42 331.0 30.3 380 24-503 13-412 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-38 3E-42 335.9 29.6 441 19-503 29-514 (562)
27 2id5_A Lingo-1, leucine rich r 100.0 1.9E-37 6.5E-42 326.7 26.5 346 24-503 14-360 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 3.5E-37 1.2E-41 320.3 25.8 383 1-498 15-427 (454)
29 1o6v_A Internalin A; bacterial 100.0 2.5E-35 8.6E-40 309.1 31.8 348 18-479 43-390 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-35 5.3E-40 308.2 23.4 354 9-483 30-393 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 4.8E-35 1.6E-39 308.4 27.2 275 2-342 16-290 (477)
32 1o6v_A Internalin A; bacterial 100.0 1.6E-34 5.5E-39 303.0 30.9 340 2-455 51-390 (466)
33 3o6n_A APL1; leucine-rich repe 100.0 1.3E-34 4.5E-39 296.7 25.8 335 43-503 43-378 (390)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-34 4.4E-39 286.8 20.4 258 203-507 50-312 (313)
35 1jl5_A Outer protein YOPM; leu 100.0 5.3E-34 1.8E-38 296.4 25.4 371 19-500 9-409 (454)
36 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.4E-38 303.8 27.3 335 43-503 49-384 (597)
37 3bz5_A Internalin-J, INLJ; leu 100.0 2E-33 6.9E-38 292.3 25.4 341 1-461 46-395 (457)
38 4fmz_A Internalin; leucine ric 100.0 2.9E-32 9.9E-37 274.8 26.3 196 223-477 151-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 4.6E-32 1.6E-36 277.8 27.5 304 2-338 50-353 (390)
40 4fmz_A Internalin; leucine ric 100.0 9.7E-32 3.3E-36 271.0 25.2 306 18-453 41-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.1E-31 7E-36 287.9 28.1 305 2-339 56-360 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-31 3.9E-36 265.6 15.9 250 178-479 53-306 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-34 4.1E-39 304.2 -6.0 383 22-478 4-441 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-30 1.1E-34 258.1 24.2 82 46-131 34-115 (332)
45 1xku_A Decorin; proteoglycan, 100.0 9.8E-30 3.3E-34 254.3 27.2 198 228-474 122-329 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-34 1.1E-38 301.0 -6.0 388 1-459 7-446 (461)
47 1xku_A Decorin; proteoglycan, 100.0 2E-29 6.9E-34 252.0 27.5 291 21-358 31-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.7E-30 3E-34 254.8 22.9 287 22-358 34-330 (332)
49 2z66_A Variable lymphocyte rec 100.0 7.9E-29 2.7E-33 245.0 18.0 237 202-483 27-267 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 7E-28 2.4E-32 251.5 24.1 235 202-483 74-309 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 7.7E-28 2.6E-32 250.3 23.7 234 203-483 64-298 (440)
52 1ozn_A Reticulon 4 receptor; N 100.0 5.1E-28 1.7E-32 236.5 18.4 250 206-503 14-265 (285)
53 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.6E-33 247.8 15.1 237 202-483 75-320 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 1.4E-27 4.9E-32 240.8 19.3 284 43-457 29-318 (353)
55 4fcg_A Uncharacterized protein 99.9 2.6E-27 9E-32 235.7 18.9 227 202-477 80-314 (328)
56 3ogk_B Coronatine-insensitive 99.9 7.6E-30 2.6E-34 276.4 0.1 414 13-479 65-528 (592)
57 2z66_A Variable lymphocyte rec 99.9 8.9E-27 3.1E-31 230.2 21.7 248 206-502 10-264 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 2.2E-26 7.7E-31 239.2 25.0 246 24-312 46-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 2E-26 6.8E-31 240.5 24.2 248 23-313 56-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-26 9.6E-31 224.1 21.3 255 24-321 14-269 (285)
61 3ogk_B Coronatine-insensitive 99.9 7.3E-29 2.5E-33 268.7 -0.3 410 36-500 64-526 (592)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-27 5.8E-32 236.3 7.7 240 201-498 32-273 (317)
63 4fcg_A Uncharacterized protein 99.9 6.2E-26 2.1E-30 225.7 18.9 205 201-454 102-315 (328)
64 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.5E-31 241.9 12.6 222 200-479 31-252 (487)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-26 4.4E-31 230.0 8.2 263 3-317 16-280 (317)
66 2z62_A TOLL-like receptor 4, v 99.9 9.1E-25 3.1E-29 212.3 21.1 212 228-485 29-245 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-24 6.4E-29 231.3 25.1 269 22-349 41-309 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3E-24 1E-28 229.6 25.9 269 45-440 40-308 (622)
69 2o6q_A Variable lymphocyte rec 99.9 2.3E-24 7.8E-29 208.6 22.0 207 205-483 18-224 (270)
70 1wwl_A Monocyte differentiatio 99.9 1.4E-26 4.8E-31 229.1 5.3 226 205-478 65-310 (312)
71 2p1m_B Transport inhibitor res 99.9 1.4E-27 4.8E-32 258.8 -5.3 410 16-477 61-519 (594)
72 1p9a_G Platelet glycoprotein I 99.9 8.4E-24 2.9E-28 206.3 19.9 207 223-481 6-212 (290)
73 1wwl_A Monocyte differentiatio 99.9 1.3E-24 4.4E-29 215.0 14.1 245 2-289 48-310 (312)
74 3oja_A Leucine-rich immune mol 99.9 1.2E-24 4.1E-29 228.3 13.3 221 224-502 31-253 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.3E-28 202.2 21.0 211 203-456 28-240 (276)
76 2p1m_B Transport inhibitor res 99.9 1.1E-26 3.9E-31 251.6 -3.9 398 17-476 101-543 (594)
77 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.3E-27 195.7 22.3 201 178-454 19-219 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.8E-22 6.2E-27 196.9 19.5 207 246-503 5-212 (290)
79 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.5E-29 221.3 1.7 254 184-481 13-320 (386)
80 3rfs_A Internalin B, repeat mo 99.9 2E-22 6.8E-27 195.1 15.2 203 225-483 39-241 (272)
81 3rfs_A Internalin B, repeat mo 99.9 2.6E-22 8.9E-27 194.2 16.0 186 248-482 38-223 (272)
82 3goz_A Leucine-rich repeat-con 99.9 7.3E-24 2.5E-28 214.2 4.5 256 180-479 3-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.9E-28 212.8 3.0 81 2-83 3-93 (362)
84 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.7E-28 215.1 2.8 248 13-316 24-319 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 7.4E-22 2.5E-26 187.3 15.3 131 204-337 32-169 (239)
86 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.8E-27 200.9 9.0 208 204-478 92-308 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 8.1E-22 2.8E-26 187.0 13.4 196 228-474 32-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 5.1E-21 1.7E-25 182.9 18.4 182 228-481 15-196 (251)
89 2ast_B S-phase kinase-associat 99.9 1.2E-22 4.2E-27 203.3 6.5 231 203-483 70-312 (336)
90 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.8E-27 202.9 6.7 257 21-321 47-314 (336)
91 1h6u_A Internalin H; cell adhe 99.9 5E-21 1.7E-25 188.6 16.9 193 225-478 39-231 (308)
92 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.8E-26 192.4 12.9 223 228-500 65-307 (310)
93 3m19_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 177.7 18.5 181 203-455 14-194 (251)
94 4ay9_X Follicle-stimulating ho 99.8 4.5E-20 1.5E-24 185.4 19.0 241 24-310 12-256 (350)
95 1h6u_A Internalin H; cell adhe 99.8 3.1E-20 1.1E-24 182.9 16.4 192 202-454 40-231 (308)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-20 8.2E-25 174.0 10.3 179 278-504 14-194 (220)
97 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5E-24 181.6 16.6 242 178-476 12-258 (350)
98 2v9t_B SLIT homolog 2 protein 99.8 4.7E-20 1.6E-24 172.0 11.1 157 278-482 14-170 (220)
99 2o6s_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 162.5 17.0 110 227-337 28-137 (208)
100 2o6s_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 163.5 15.9 135 202-337 27-161 (208)
101 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.8E-23 183.5 16.4 187 204-463 60-253 (571)
102 3e6j_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 161.9 15.3 158 277-483 21-178 (229)
103 3cvr_A Invasion plasmid antige 99.8 2.3E-18 7.8E-23 181.9 16.6 182 228-482 60-248 (571)
104 2xot_A Amphoterin-induced prot 99.8 6.7E-19 2.3E-23 177.5 11.4 180 230-481 21-206 (361)
105 1h6t_A Internalin B; cell adhe 99.8 5.1E-18 1.8E-22 165.5 14.9 189 205-478 26-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 2.5E-18 8.4E-23 173.4 12.2 178 278-503 21-206 (361)
107 1w8a_A SLIT protein; signaling 99.8 5.3E-18 1.8E-22 154.5 13.0 156 303-505 11-168 (192)
108 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.7E-23 167.3 11.7 125 202-337 45-169 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 2E-17 6.8E-22 154.2 15.3 150 2-156 16-165 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-17 6.6E-22 154.3 14.5 155 230-456 14-169 (220)
111 1m9s_A Internalin B; cell inva 99.7 5.1E-18 1.8E-22 181.3 11.6 104 225-337 41-144 (605)
112 1m9s_A Internalin B; cell inva 99.7 3.9E-17 1.3E-21 174.5 15.8 190 229-479 23-212 (605)
113 3sb4_A Hypothetical leucine ri 99.7 3.2E-17 1.1E-21 163.1 14.0 264 20-330 48-327 (329)
114 3e6j_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 148.2 17.3 153 178-339 22-174 (229)
115 3sb4_A Hypothetical leucine ri 99.7 1.7E-17 6E-22 165.0 10.2 220 202-471 100-328 (329)
116 4ezg_A Putative uncharacterize 99.7 4.8E-17 1.6E-21 149.0 11.7 152 273-477 42-194 (197)
117 1xeu_A Internalin C; cellular 99.7 5.2E-17 1.8E-21 155.8 10.8 168 252-479 20-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 5.2E-19 1.8E-23 187.9 -3.7 85 394-481 465-550 (567)
119 2wfh_A SLIT homolog 2 protein 99.7 6.7E-17 2.3E-21 147.1 10.3 133 303-483 13-145 (193)
120 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.1E-22 159.0 6.8 123 203-337 19-141 (263)
121 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.3E-21 145.0 11.9 153 224-453 41-194 (197)
122 4fdw_A Leucine rich hypothetic 99.7 5.2E-15 1.8E-19 150.2 21.4 268 18-337 110-383 (401)
123 4fs7_A Uncharacterized protein 99.7 9.4E-15 3.2E-19 149.0 22.9 335 33-469 59-393 (394)
124 4b8c_D Glucose-repressible alc 99.6 6.6E-17 2.3E-21 177.2 6.6 218 203-477 173-404 (727)
125 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.5E-19 148.1 22.3 264 42-357 110-379 (401)
126 1dce_A Protein (RAB geranylger 99.6 8.5E-18 2.9E-22 178.6 -1.4 197 224-471 346-567 (567)
127 4fs7_A Uncharacterized protein 99.6 1E-14 3.5E-19 148.8 21.1 318 57-474 59-376 (394)
128 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.8E-21 175.4 5.7 191 208-453 206-404 (727)
129 1w8a_A SLIT protein; signaling 99.6 2.3E-15 7.8E-20 137.0 13.4 131 2-136 13-144 (192)
130 2o6r_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 133.4 12.9 93 391-483 51-143 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 133.0 11.3 137 202-342 23-164 (168)
132 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 134.2 9.3 87 392-478 71-161 (168)
133 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.5E-20 131.5 8.3 129 299-473 16-149 (149)
134 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 132.8 12.4 125 2-131 15-139 (193)
135 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 129.0 12.8 130 2-135 12-141 (177)
136 2je0_A Acidic leucine-rich nuc 99.6 7.6E-15 2.6E-19 127.7 9.7 127 202-332 16-148 (149)
137 3g39_A Variable lymphocyte rec 99.5 4.8E-14 1.6E-18 125.3 11.3 92 392-483 30-121 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.2E-14 2.5E-18 125.1 9.3 84 392-477 64-153 (176)
139 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 122.2 11.3 92 392-483 33-124 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.7E-18 123.3 9.9 130 201-337 17-153 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.3E-20 138.5 -4.4 147 2-156 23-185 (198)
142 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.5E-16 125.0 24.4 114 33-151 51-168 (394)
143 4gt6_A Cell surface protein; l 99.4 1.8E-11 6.1E-16 124.7 24.3 135 12-153 54-192 (394)
144 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6E-20 138.6 -5.6 82 392-477 93-185 (198)
145 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 115.3 11.3 108 23-134 11-118 (170)
146 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 115.5 10.9 105 24-132 15-119 (174)
147 3un9_A NLR family member X1; l 99.3 7.4E-14 2.5E-18 140.4 -1.3 166 251-456 72-255 (372)
148 4h09_A Hypothetical leucine ri 99.3 8.7E-10 3E-14 111.6 26.2 277 17-332 42-318 (379)
149 2ifg_A High affinity nerve gro 99.3 6.3E-12 2.1E-16 125.8 8.9 91 391-482 30-121 (347)
150 4h09_A Hypothetical leucine ri 99.2 2E-09 6.8E-14 109.0 23.5 300 9-349 57-357 (379)
151 3un9_A NLR family member X1; l 99.2 1.9E-13 6.5E-18 137.4 -7.3 188 44-264 71-283 (372)
152 2ifg_A High affinity nerve gro 99.2 5.1E-11 1.7E-15 119.2 9.6 107 395-503 11-120 (347)
153 2ra8_A Uncharacterized protein 98.9 9.6E-10 3.3E-14 109.4 3.9 83 391-475 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.5E-09 5.2E-14 107.9 4.5 181 225-451 137-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 7.9E-13 89.6 0.4 68 15-83 30-106 (185)
156 3rw6_A Nuclear RNA export fact 98.3 6.4E-07 2.2E-11 84.3 5.2 62 391-454 169-234 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 1.8E-07 6E-12 83.8 1.2 89 249-337 63-164 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.6E-07 5.6E-12 88.4 -0.2 106 17-124 137-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 4.8E-07 1.6E-11 78.8 1.1 85 392-476 61-151 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 8E-11 74.5 2.1 86 45-131 61-153 (176)
161 3rfe_A Platelet glycoprotein I 97.6 9.7E-05 3.3E-09 61.3 6.2 61 420-482 12-73 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00014 4.7E-09 64.6 2.3 65 18-82 38-110 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00035 1.2E-08 62.0 3.6 115 40-155 36-169 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0047 1.6E-07 51.0 6.3 57 395-453 11-68 (130)
165 2ks1_B Epidermal growth factor 89.0 0.2 7E-06 31.6 1.9 28 535-562 13-40 (44)
166 2l2t_A Receptor tyrosine-prote 88.0 0.18 6.2E-06 31.7 1.2 27 537-563 14-40 (44)
167 2jwa_A Receptor tyrosine-prote 85.4 0.28 9.5E-06 30.8 1.1 29 535-563 13-41 (44)
168 2k1k_A Ephrin type-A receptor 84.9 0.52 1.8E-05 28.7 2.1 28 532-559 9-36 (38)
169 2lz0_A Uncharacterized protein 78.8 2 6.9E-05 33.0 4.0 46 32-79 7-52 (100)
170 2lz0_A Uncharacterized protein 76.8 6.4 0.00022 30.1 6.3 48 214-262 7-54 (100)
171 2l9u_A Receptor tyrosine-prote 69.9 2.3 7.8E-05 24.6 1.6 26 537-562 10-35 (40)
172 1iij_A ERBB-2 receptor protein 57.8 3.1 0.00011 24.6 0.7 20 540-559 14-33 (35)
173 2l6w_A Beta-type platelet-deri 48.0 5.4 0.00019 24.0 0.0 12 553-564 27-38 (39)
174 2l34_A TYRO protein tyrosine k 36.4 19 0.00065 21.0 1.7 24 534-557 7-30 (33)
175 2klu_A T-cell surface glycopro 33.2 14 0.00049 25.2 1.0 15 539-553 12-26 (70)
176 2llm_A Amyloid beta A4 protein 27.4 19 0.00066 22.2 0.0 23 536-558 19-42 (43)
177 1pi7_A VPU protein, U ORF prot 20.4 51 0.0017 19.6 1.6 6 550-555 21-26 (36)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-59 Score=519.70 Aligned_cols=496 Identities=30% Similarity=0.433 Sum_probs=362.9
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
|+|++|++++.+|. ++++++|++|++++|.+++.+|..+..+++|++|++++|++++.++.. .+++|++|++++|.
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSE
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCc
Confidence 67888888877776 888888888888888888777888888888888888888887666642 77888888888888
Q ss_pred eeeEeCCCCCCC-CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353 82 LVFKINPNWVPP-FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP 160 (596)
Q Consensus 82 l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (596)
+++..+..+... ++|++|++++|++.+..|..++++++|++|++++|.+++.+|...+..+++|++|++++|++++..|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 887777777664 8899999999988888888888899999999999988888887766668889999999998887776
Q ss_pred CCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc
Q 044353 161 KFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240 (596)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (596)
..+..... .-+.+++++|.+.+..+..++. ..+++|++|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus 361 ~~l~~l~~-------~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 361 ESLTNLSA-------SLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp TTHHHHTT-------TCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HHHHhhhc-------CCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 65432210 0155666666666554433321 11345666666666666566666666666666666666666
Q ss_pred ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc
Q 044353 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL 320 (596)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 320 (596)
+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|..+
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHH
Confidence 66666666666666666666666666666666666666666666666655555554 56666666666666666666666
Q ss_pred CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc-CCCC------------Ccee--------------
Q 044353 321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA-SSGD------------NEIV-------------- 373 (596)
Q Consensus 321 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~------------~~~~-------------- 373 (596)
+.+++|++|++++|++++.+|..+.+++.|+.++++.+...-..+ .... ..+.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 666666666666666666666666666666666665543210000 0000 0000
Q ss_pred -----------------------eeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcc
Q 044353 374 -----------------------EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 430 (596)
Q Consensus 374 -----------------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 430 (596)
........+..+..+..+++|+.||+++|.+++.+|..++.+++|+.|+|++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 000011223334455678899999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCCCCCC
Q 044353 431 RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNCTE 509 (596)
Q Consensus 431 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~~c~~ 509 (596)
.+|+.++.+++|+.|||++|++++.+|..+..++.|++||+++|+++|.+|...++.++...++.||| +||.|+..|..
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999888864
Q ss_pred CC
Q 044353 510 KN 511 (596)
Q Consensus 510 ~~ 511 (596)
..
T Consensus 751 ~~ 752 (768)
T 3rgz_A 751 SN 752 (768)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-53 Score=479.89 Aligned_cols=486 Identities=18% Similarity=0.183 Sum_probs=353.6
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccC-CccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPI-PLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 79 (596)
+|||++|.+++..|..|+++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|. .|.++++|++|+|++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYF 106 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTT
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEeeCcC
Confidence 3799999999988999999999999999999555444 78899999999999999999855454 899999999999999
Q ss_pred CeeeeEeCCC--CCCCCCccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCChhHHhcC--CCCcEEEccccc
Q 044353 80 NSLVFKINPN--WVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPRGFWNSI--FQYDYLNVSGNQ 154 (596)
Q Consensus 80 n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~ 154 (596)
|.+.+..+.. +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+.. + ++|+.|+++.|.
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANS 185 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSB
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCc
Confidence 9988755554 8899999999999999987655 57899999999999999998777766543 3 789999999998
Q ss_pred ccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCC--------------------------------C-
Q 044353 155 IYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN--------------------------------F- 201 (596)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~--------------------------------~- 201 (596)
+.+..+..+........ ...-+.+++++|.+.+..+..+...+. .
T Consensus 186 l~~~~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFR--NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SCCCCCCCCCSSSCTTT--TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred cccccccchhhcCCccc--cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 88766655443321110 111167778877766555444332211 1
Q ss_pred -CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353 202 -SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 202 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 280 (596)
.++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 2578888888888887778888888888888888888887778888888888888888888887778888888888888
Q ss_pred EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360 (596)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 360 (596)
++++|.+. .++...+..+++|++|++++|.+++. + .+++|+.|++++|+++ .+|.. ...++.++++.+..
T Consensus 344 ~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL 413 (844)
T ss_dssp ECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred ECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence 88888886 55554444688888888888887732 2 2566677777766666 34432 22333333333322
Q ss_pred CccccC--CCCCceeeeeEEEeccc----eeecccccccccEEEccCCccc-----ccCCccccCcccCCeeeccCccCc
Q 044353 361 GIFYAS--SGDNEIVEDALLVTKGF----LVEYNSILNLVRSIDISKNNFS-----GEIPVEVTNLQGLQSLNLSHNLFT 429 (596)
Q Consensus 361 ~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~ 429 (596)
...... ...........+..... .......+++|+.|++++|.++ +..+..|.++++|+.|+|++|+++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 111000 00000011111111110 0112334677888888888886 344566888899999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCC
Q 044353 430 GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPL 504 (596)
Q Consensus 430 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~ 504 (596)
+..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +..+..+++.+|| .|.|+.
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 88888889999999999999999977776665 78999999999998887754 5678888899999 787754
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-53 Score=470.96 Aligned_cols=470 Identities=29% Similarity=0.420 Sum_probs=315.0
Q ss_pred eeecCCCccccCCcc---ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEcc
Q 044353 2 LFLRRSQFYGHLTNQ---LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH 78 (596)
Q Consensus 2 l~L~~n~l~~~~~~~---l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 78 (596)
|||++|++++..|.. +.++++|++|++++|.+++..+ +..+++|++|+|++|++.+.++. +.++++|++|+++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDIS 231 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECC
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECc
Confidence 677777777666655 5566666666666666554433 24555555555555555544442 5555555555555
Q ss_pred CCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccccc
Q 044353 79 GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGG 158 (596)
Q Consensus 79 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (596)
+|.+++..+..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..++..+++|++|++++|++++.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 55555444455555555555555555554433332 4455555555555554444444443334555555555555444
Q ss_pred CCCCCCCCCCc--cc--------------cCCCCC-ceEEcccCccccccccccccCCCCCC-CccEEeCcCCcCCCCCC
Q 044353 159 VPKFDSPSVPL--IT--------------TPSLLG-SIFDLSNNALSGSIFHLICQGENFSK-NIEFLKLSKNHFSEDIP 220 (596)
Q Consensus 159 ~~~~~~~~~~~--~~--------------~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~ 220 (596)
.|..+...... ++ +..++. +.+++++|.+.+.++..+.. ++ +|+.|++++|.+.+..|
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~----l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN----LSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH----HTTTCSEEECCSSEEEEECC
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh----hhcCCcEEEccCCCcCCCcC
Confidence 44332221110 00 011122 56666666666555544333 33 67777777777766666
Q ss_pred cccCC--CCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhh
Q 044353 221 DCWMN--WPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET 298 (596)
Q Consensus 221 ~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 298 (596)
..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~ 464 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y 464 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-G
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-C
Confidence 65555 66777777777777777777777777777777777777777777777777777777777777767776665 5
Q ss_pred cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEE
Q 044353 299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378 (596)
Q Consensus 299 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 378 (596)
+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.++.|+.++++.+...
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----------------- 527 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----------------- 527 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-----------------
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc-----------------
Confidence 777777777777777777777777777777777777777777777777777777777765432
Q ss_pred EeccceeecccccccccEEEccCCcccccCCc------------------------------------------------
Q 044353 379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPV------------------------------------------------ 410 (596)
Q Consensus 379 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------------------------------------------------ 410 (596)
+..+..+..+++|+.|++++|.+++.+|.
T Consensus 528 ---~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 528 ---GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp ---EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred ---CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 12233445577788888887777765554
Q ss_pred ----------------------cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 044353 411 ----------------------EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468 (596)
Q Consensus 411 ----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 468 (596)
.+..+++|+.|+|++|+++|.+|..++.++.|+.|+|++|++++.+|..++.+++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 3445678999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCccCCCCC-CccCccccccccCCCCCCC
Q 044353 469 LNLSNNNLNGEIPSS-TQLQSFGASSFAGNDLCGA 502 (596)
Q Consensus 469 L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~lc~~ 502 (596)
||+++|+++|.+|.. ..+..++.+++++|++.|.
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 999999999999876 6788899999999986654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-50 Score=436.05 Aligned_cols=489 Identities=19% Similarity=0.160 Sum_probs=330.5
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..|..|+++++|++|++++|.+++..|.+|.++++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQT 115 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeecccc
Confidence 379999999998899999999999999999999988899999999999999999999855454 8999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCc--EEEccccccccc
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYD--YLNVSGNQIYGG 158 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~--~L~l~~n~l~~~ 158 (596)
.++...+..+..+++|++|++++|++.+.....+..+++|++|++++|.+++..+..+ ..+++|+ .|++++|++++.
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEE
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCcc
Confidence 9988777889999999999999999987655555569999999999999986445444 5578898 899999999887
Q ss_pred CCCCCCCCCCccccCCCCCceEEcccCc---------------------ccc----ccccccccCCCCCCCccEEeCcCC
Q 044353 159 VPKFDSPSVPLITTPSLLGSIFDLSNNA---------------------LSG----SIFHLICQGENFSKNIEFLKLSKN 213 (596)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~ls~n~---------------------l~~----~~~~~~~~~l~~~~~L~~L~l~~n 213 (596)
.+..+... .. +.++++++. +.+ .+.......+.. .+++.|++++|
T Consensus 195 ~~~~~~~~-~L--------~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~n 264 (606)
T 3t6q_A 195 EPGAFDSA-VF--------QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKH 264 (606)
T ss_dssp CTTTTTTC-EE--------EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTTC
T ss_pred ChhHhhhc-cc--------cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-CceeEEEeecC
Confidence 76654321 00 222222221 000 000000000000 14555555555
Q ss_pred cCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCch
Q 044353 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT 293 (596)
Q Consensus 214 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (596)
.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 555555555555555555555555555 4455555555555555555555555555555555555555555555544544
Q ss_pred hhhhhcccccEEEccCCcCcCcC--CcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC--CCC
Q 044353 294 WIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS--SGD 369 (596)
Q Consensus 294 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~ 369 (596)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..++.|+.++++.+........ ...
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 43334555555555555555333 44455555555555555555555555555555555555554432211110 001
Q ss_pred CceeeeeEEE---eccceeecccccccccEEEccCCccccc---CCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353 370 NEIVEDALLV---TKGFLVEYNSILNLVRSIDISKNNFSGE---IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 443 (596)
Q Consensus 370 ~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 443 (596)
........+. .....+..+..+++|+.|++++|.+++. .+..+..+++|++|+|++|++++..|..|+.+++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 1111111111 1122233455678899999999988762 335688889999999999999888888899999999
Q ss_pred EEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC-CCCCC
Q 044353 444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 444 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+|++++|++++..|+.+..++.| .|++++|++++..|.. ..++.++.+++.+|| .|.++
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999998888889999999 9999999998776654 557778888899998 66543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.8e-49 Score=432.88 Aligned_cols=497 Identities=20% Similarity=0.150 Sum_probs=341.2
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCC
Confidence 3799999999888888999999999999999999888999999999999999999998 777667999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHH-hcCCCCcEEEcccccccccC
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW-NSIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~ 159 (596)
.+....+..|..+++|++|++++|.+.+..+..++++++|++|++++|.+++..+..+. ..+++|++|++++|++++..
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 99887778899999999999999999988888899999999999999999865554432 13478999999999887766
Q ss_pred CCCCCCCCC-----------------------------ccc-------------cCCC--C-CceEEcccCccccccccc
Q 044353 160 PKFDSPSVP-----------------------------LIT-------------TPSL--L-GSIFDLSNNALSGSIFHL 194 (596)
Q Consensus 160 ~~~~~~~~~-----------------------------~~~-------------~~~~--~-~~~l~ls~n~l~~~~~~~ 194 (596)
+..+..... .+. +..+ . -+.+++++|.+.+..+.
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~- 266 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND- 266 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-
T ss_pred hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-
Confidence 543322110 000 0000 1 14555555555443322
Q ss_pred cccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc-----cCC----ccCcCCCCCcEEEccCCcccc
Q 044353 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG-----SLP----MSIGALNSLMSLNLRNNRLSG 265 (596)
Q Consensus 195 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~l~~ 265 (596)
.++.+++|+.|++++|.+.+..|..|..+++|+.|++++|...+ .+| ..|..+++|++|++++|.+.+
T Consensus 267 ---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 267 ---SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp ---TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ---cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 23345666666666666655555555544444444444432221 111 134455556666666666665
Q ss_pred cCChhhcCCCCCCEEEccCC----------------------------cccccCchhhhhhcccccEEEccCCcCcCcCC
Q 044353 266 IIPTSFRNLSILKALDMGEN----------------------------ELVGNIPTWIGETFSRLMILNLRSNKFHGDFP 317 (596)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~n----------------------------~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 317 (596)
..+..|.++++|++|++++| ++.+..|..+ ..+++|++|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECC
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccC
Confidence 55555555555555554443 3332223233 356777777777777765444
Q ss_pred -cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc---cccCCCCCceeeeeEEE---eccceeecccc
Q 044353 318 -IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI---FYASSGDNEIVEDALLV---TKGFLVEYNSI 390 (596)
Q Consensus 318 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 390 (596)
..+.++++|++|++++|++.+..+..+..++.|+.++++.+.... ...............+. ........+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 566777777777777777776666677777777777766654321 11111111111112211 11222334566
Q ss_pred cccccEEEccCCcccccCC--------ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 391 LNLVRSIDISKNNFSGEIP--------VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
+++|+.|++++|.+++..+ ..|.++++|+.|+|++|+++...+..|..+++|+.|++++|+++++.+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 8889999999999875422 23788899999999999998555567899999999999999999877788889
Q ss_pred CCCCCEEecccccCccCCCCCC--ccCccccccccCCC-CCCCC
Q 044353 463 LSFLNYLNLSNNNLNGEIPSST--QLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 463 l~~L~~L~ls~N~l~~~~~~~~--~~~~l~~~~~~~n~-lc~~~ 503 (596)
+++|+.|++++|++++..+... .++.++.+++.+|| .|+|+
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999999987766542 57788899999999 77665
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-48 Score=422.05 Aligned_cols=463 Identities=18% Similarity=0.100 Sum_probs=367.7
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|++++..|. .|.++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCC
Confidence 378999999988888999999999999999999988888899999999999999999844454 8999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCC----CcEEEcccccc
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQ----YDYLNVSGNQI 155 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l~~n~l 155 (596)
.+....+..+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+.. +++ +..+++++|.+
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCc
Confidence 9987777789999999999999999876 56888999999999999999998765554432 333 44788888888
Q ss_pred cccCCCCCCCCCCccccCCCCCceEEcccCccccc---------------------------------------------
Q 044353 156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGS--------------------------------------------- 190 (596)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~--------------------------------------------- 190 (596)
++..+..+... .. +.+++++|.+.+.
T Consensus 194 ~~~~~~~~~~~-~L--------~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 194 DFIQDQAFQGI-KL--------HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp CEECTTTTTTC-EE--------EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred ceeCcccccCc-ee--------eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 76554443221 11 4455555543210
Q ss_pred ---------cccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 191 ---------IFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 191 ---------~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
.....+ .+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|
T Consensus 265 ~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred heecccccccccccc-ccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence 001111 14457889999999999865 44 788889999999999999 4777 45 8899999999999
Q ss_pred cccccCChhhcCCCCCCEEEccCCccccc--CchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc
Q 044353 262 RLSGIIPTSFRNLSILKALDMGENELVGN--IPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT 339 (596)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 339 (596)
...+.. .+..+++|+.|++++|.+.+. ++..+. .+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+.
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 655433 567899999999999998744 255555 78999999999999884 667888999999999999999877
Q ss_pred CC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc-cCCccccCccc
Q 044353 340 IP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG-EIPVEVTNLQG 417 (596)
Q Consensus 340 ~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 417 (596)
.| ..+..+++|+.++++.+..... .+..+..+++|++|++++|.+++ .+|..|..+++
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKID--------------------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cChhhhhccccCCEEECcCCCCCcc--------------------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 77 6888999999999987654221 12234557889999999999987 47888999999
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccC-ccccccccC
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ-SFGASSFAG 496 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~l~~~~~~~ 496 (596)
|++|+|++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|+++...+....++ .++.+++.+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 9999999999998888999999999999999999998889999999999999999999985444435555 488889999
Q ss_pred CC-CCCCCC
Q 044353 497 ND-LCGAPL 504 (596)
Q Consensus 497 n~-lc~~~~ 504 (596)
|| .|.++.
T Consensus 555 N~~~c~c~~ 563 (606)
T 3vq2_A 555 NSVACICEH 563 (606)
T ss_dssp CCCCCSSTT
T ss_pred CCcccCCcc
Confidence 99 676654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-48 Score=422.94 Aligned_cols=447 Identities=19% Similarity=0.178 Sum_probs=326.8
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..|++|+++++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCC
Confidence 4799999999999999999999999999999999888999999999999999999998 554448999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc--EEEcccCcCcccCChhHHhcCCCCcEEEcccc-----
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY--YLDISSTRISAKIPRGFWNSIFQYDYLNVSGN----- 153 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n----- 153 (596)
.+.....+.+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+++..+..+ . ...|+.|++++|
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-D-SAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-T-TCEEEEEECTTCSCHHH
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-h-hccccccccCCchhHHH
Confidence 99876666677799999999999999988899999999999 89999999987655543 2 234555555544
Q ss_pred -----------------------------------------------cccccCCCCCCCCCCccccCCCCC-ceEEcccC
Q 044353 154 -----------------------------------------------QIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNN 185 (596)
Q Consensus 154 -----------------------------------------------~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n 185 (596)
.+++..+..+.. ++. +.+++++|
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n 288 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC---------FSGLQELDLTAT 288 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT---------CTTCSEEECTTS
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc---------ccCCCEEeccCC
Confidence 333322222211 112 55566665
Q ss_pred ccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCc-cCcCCCCCcEEEccCCccc
Q 044353 186 ALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPM-SIGALNSLMSLNLRNNRLS 264 (596)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 264 (596)
.++ . ++..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus 289 ~l~-~----lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 289 HLS-E----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CCS-C----CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccC-C----CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 554 1 222334456666666666666655555566666666666666665533333 3556666666666666665
Q ss_pred ccC--ChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc-ccCCCCCCcEEeCCCCcCcccCC
Q 044353 265 GII--PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI-QLCRLGSLQILDVAYNSLSGTIP 341 (596)
Q Consensus 265 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 341 (596)
+.. +..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 444 45566666666666666666533333333 566666666666666544333 35566666666666666665566
Q ss_pred ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353 342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL 421 (596)
Q Consensus 342 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 421 (596)
..+..+++|+.++++.+...... ......+..+++|+.|++++|.+++..|..|..+++|++|
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGN-----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGE-----------------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred HHHhCCCCCCEEECCCCCCCccc-----------------cccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 66666666666666554321100 0011335668999999999999998889999999999999
Q ss_pred eccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 422 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
+|++|++++..|+.+..++.| .|++++|++++..|..+..+++|+.|++++|++.|.|+..
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 999999999999999999999 9999999999988999999999999999999999998854
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-47 Score=416.43 Aligned_cols=481 Identities=19% Similarity=0.159 Sum_probs=338.5
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|.+++..|.+++++++|++|++++|.++...+.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCC
Confidence 3799999999999999999999999999999999776678999999999999999998 565558999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhc--CCCCCcEEEcccCcCcccCChhHHh------------------
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQ--SQKKLYYLDISSTRISAKIPRGFWN------------------ 140 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~------------------ 140 (596)
.+.+..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 211 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH
T ss_pred cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhh
Confidence 99988888899999999999999999887777654 5688999999988887655543321
Q ss_pred --------cCCCCcEEEcccccccccCCCCCCCC----CCccc-------------cCCCCC-ceEEcccCccccccccc
Q 044353 141 --------SIFQYDYLNVSGNQIYGGVPKFDSPS----VPLIT-------------TPSLLG-SIFDLSNNALSGSIFHL 194 (596)
Q Consensus 141 --------~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~-------------~~~~~~-~~l~ls~n~l~~~~~~~ 194 (596)
..++|+.|++++|.+++..+..+... ++.++ +..++. +.+++++|.+.+..+..
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh
Confidence 01345555555555555444433221 11111 111222 67777777776544322
Q ss_pred cc-----------------------------cCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc--ccC
Q 044353 195 IC-----------------------------QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT--GSL 243 (596)
Q Consensus 195 ~~-----------------------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~ 243 (596)
+. ..++.+++|++|++++|.+.+..+..|..+++|++|++++|.+. ...
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence 11 14556778888888888888777777888888888877776533 112
Q ss_pred CccCcCC--CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 244 PMSIGAL--NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 244 ~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
...|..+ ++|+.|++++|.+.++.+..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+.
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence 2222222 35666666666666666667777777777777777776556654444666777777777766655555555
Q ss_pred CCCCCcEEeCCCCcCc--ccCCccccccccCcccCCCCCCCCccccC-CCCCceeeeeEEEeccc-----------eeec
Q 044353 322 RLGSLQILDVAYNSLS--GTIPRCINNFSAMATTDSSDPNSGIFYAS-SGDNEIVEDALLVTKGF-----------LVEY 387 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~ 387 (596)
.+++|+.|++++|.+. +.+|..+..+++|+.++++.+........ ...........+..... ....
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 5556666666655554 34455555555555555555443322211 11111111111111100 1123
Q ss_pred ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc-CCCCC
Q 044353 388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS-NLSFL 466 (596)
Q Consensus 388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 466 (596)
+..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+. .+++|
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 56789999999999999955556799999999999999999977778889999999999999999988888787 78999
Q ss_pred CEEecccccCccCCCC
Q 044353 467 NYLNLSNNNLNGEIPS 482 (596)
Q Consensus 467 ~~L~ls~N~l~~~~~~ 482 (596)
+.+++++|++.|.|+.
T Consensus 612 ~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 612 TELDMRFNPFDCTCES 627 (680)
T ss_dssp SEEECTTCCCCBCCCC
T ss_pred CEEEccCCCcccCCcc
Confidence 9999999999999986
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7e-48 Score=432.96 Aligned_cols=451 Identities=20% Similarity=0.197 Sum_probs=354.4
Q ss_pred CeeecCCCccccC-CccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccCh-hhhhcCCCCcEEEcc
Q 044353 1 SLFLRRSQFYGHL-TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE-IHFLNLTQLLVFRAH 78 (596)
Q Consensus 1 ~l~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~L~ 78 (596)
+|||++|.+.+.+ |.+|+++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++.++. ..|.++++|++|+++
T Consensus 52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 4799999766665 88999999999999999999998999999999999999999999865554 348999999999999
Q ss_pred CCeeeeEeC-CCCCCCCCccEEEccCCCCCCCcchhhcCC--CCCcEEEcccCcCcccCChhHHhcCC------CCcEEE
Q 044353 79 GNSLVFKIN-PNWVPPFQLAFLELRSCHLGPRFPLWLQSQ--KKLYYLDISSTRISAKIPRGFWNSIF------QYDYLN 149 (596)
Q Consensus 79 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~ 149 (596)
+|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+.. +. .|+.|+
T Consensus 132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILD 210 (844)
T ss_dssp SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEB
T ss_pred CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEe
Confidence 999987655 478999999999999999998888888877 89999999999998777665422 22 499999
Q ss_pred cccccccccCCCCCCCCCCc-----cc----------------------cCCC--CC-ceEEcccCccccccccccccCC
Q 044353 150 VSGNQIYGGVPKFDSPSVPL-----IT----------------------TPSL--LG-SIFDLSNNALSGSIFHLICQGE 199 (596)
Q Consensus 150 l~~n~l~~~~~~~~~~~~~~-----~~----------------------~~~~--~~-~~l~ls~n~l~~~~~~~~~~~l 199 (596)
+++|.+++..+..+...... +. +... .. +.+++++|.+.+..+. .+
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----~~ 286 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----VF 286 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----CS
T ss_pred cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh----hh
Confidence 99998877665443322110 00 0111 22 8899999988765443 34
Q ss_pred CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279 (596)
Q Consensus 200 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 279 (596)
+.+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|+.|++++|.+..+.+..|..+++|++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 55899999999999999988999999999999999999999888999999999999999999999888889999999999
Q ss_pred EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcc----------------------cCCCCCCcEEeCCCCcCc
Q 044353 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ----------------------LCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~ 337 (596)
|++++|.++ .++. +++|+.|++++|.++ .+|.. +..+++|+.|++++|+++
T Consensus 367 L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 367 LDLRDNALT-TIHF-----IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp EEEETCCSC-CCSS-----CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred EECCCCCCC-cccC-----CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 999999987 4442 567778887777776 33322 224445555555555544
Q ss_pred ccCCc-cccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcc
Q 044353 338 GTIPR-CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQ 416 (596)
Q Consensus 338 ~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 416 (596)
+..+. .+..+++|+.++++.+....... .+.....+..+++|+.|+|++|.+++..|..|.+++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWE---------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCC---------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred ccccccccccCCccccccCCCCccccccc---------------cccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 32221 23334444444444433211100 012223456689999999999999998999999999
Q ss_pred cCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 417 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
+|++|+|++|++++..+..+. ++|+.|++++|++++..|..| .+|+.+++++|++.|.|+..
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 999999999999977777665 899999999999999888776 47999999999999999854
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-46 Score=401.44 Aligned_cols=444 Identities=20% Similarity=0.166 Sum_probs=304.9
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..+.+|+.+++|++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccccc
Confidence 3789999999888889999999999999999999888888999999999999999998 555458999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC----cEEEcccccc
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY----DYLNVSGNQI 155 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L----~~L~l~~n~l 155 (596)
.+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+ ..+++| +.+++++|.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcccCCCCc
Confidence 9887766678999999999999999887 468889999999999999999986555544 346677 8899999998
Q ss_pred cccCCCCCCCCCCccccCCCCCceEEcccCcccc----------------------------------------------
Q 044353 156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG---------------------------------------------- 189 (596)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~---------------------------------------------- 189 (596)
.+..+..+... .. +.+++++|....
T Consensus 190 ~~~~~~~~~~~-~L--------~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 190 NFIQPGAFKEI-RL--------HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp CEECTTTTTTC-EE--------EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred eecCHHHhccC-cc--------eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 87666544321 10 233333321100
Q ss_pred --------ccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 190 --------SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 190 --------~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
......+..+..+++|+.|++++|.+.+ +|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 0011112233345667777777776653 55555666 6777777777666 4443 34566777777777
Q ss_pred cccccCChhhcCCCCCCEEEccCCcccccC--chhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc
Q 044353 262 RLSGIIPTSFRNLSILKALDMGENELVGNI--PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT 339 (596)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 339 (596)
.+.+..+. ..+++|++|++++|.+.+.. +..+. .+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESC
T ss_pred cccccccc--ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccc
Confidence 66644433 56677777777777665322 34443 56777777777776664333 366677777777777776655
Q ss_pred CC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc-ccCCccccCccc
Q 044353 340 IP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS-GEIPVEVTNLQG 417 (596)
Q Consensus 340 ~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 417 (596)
.| ..+..+++|+.++++.+..... ....+..+++|+.|++++|.++ +.+|..+..+++
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cchhhhhcCCCCCEEeCcCCccccc--------------------chhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 44 4566666666666665532111 1122334666777777777765 456666777777
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 484 (596)
|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++|.||...
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 7777777777766666667777777777777777776666666677777777777777777766553
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-46 Score=405.54 Aligned_cols=448 Identities=19% Similarity=0.140 Sum_probs=371.4
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..|.+|+++++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSS
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCC
Confidence 3799999999999999999999999999999999888999999999999999999998 555447999999999999999
Q ss_pred eeee-EeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc----EEEcccCcCcccCChhHHhcCCCCcEEEcccccc
Q 044353 81 SLVF-KINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY----YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI 155 (596)
Q Consensus 81 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 155 (596)
.+.. ..+..+..+++|++|++++|++.+..+..++.+++|+ .|++++|.+++ ++...+.. .+|+.|++++|.+
T Consensus 139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFN 216 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTT-CEEEEEEEESCCS
T ss_pred cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccC-ceeeeeeccCCcc
Confidence 9986 4578899999999999999999988787777665554 89999999984 55554453 3899999999876
Q ss_pred cccC-CCCCC-----------------------------CCC---------------CccccC---CCCC-ceEEcccCc
Q 044353 156 YGGV-PKFDS-----------------------------PSV---------------PLITTP---SLLG-SIFDLSNNA 186 (596)
Q Consensus 156 ~~~~-~~~~~-----------------------------~~~---------------~~~~~~---~~~~-~~l~ls~n~ 186 (596)
++.. +..+. ... -.-..| .+.. +.++++++.
T Consensus 217 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 296 (606)
T 3vq2_A 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296 (606)
T ss_dssp CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC
T ss_pred chhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc
Confidence 5210 00000 000 000011 1222 778888887
Q ss_pred cccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccccc
Q 044353 187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI 266 (596)
Q Consensus 187 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 266 (596)
+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++.
T Consensus 297 ~~~-l~-----~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 297 IKY-LE-----DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS 365 (606)
T ss_dssp CCC-CC-----CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred chh-hh-----hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence 753 22 456688999999999999 5677 45 9999999999999655443 577899999999999999876
Q ss_pred --CChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCcc
Q 044353 267 --IPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRC 343 (596)
Q Consensus 267 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 343 (596)
.+..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 3788999999999999999997 5775555 79999999999999997777 68899999999999999999999999
Q ss_pred ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeec
Q 044353 344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423 (596)
Q Consensus 344 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 423 (596)
+..+++|+.++++.+.... ...+..+..+++|+.|++++|.+++..|..|.++++|++|+|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKD-------------------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TTTCTTCCEEECTTCEEGG-------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCcCCC-------------------cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 9999999999998764321 012334566899999999999999999999999999999999
Q ss_pred cCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEecccccCccCCCCCC
Q 044353 424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPSST 484 (596)
Q Consensus 424 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~~~~~~ 484 (596)
++|++++..|..++.+++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.|+..+
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 999999888999999999999999999999 5666688887 59999999999999998653
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.3e-46 Score=403.08 Aligned_cols=410 Identities=18% Similarity=0.267 Sum_probs=307.6
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCccccc---------------------------------CCccCc------
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGP---------------------------------IPLSLG------ 42 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~---------------------------------~~~~~~------ 42 (596)
|+|++|++.|.+|++++++++|++|+|++|.+... .|..+.
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 78999999999999999999999999999865210 000110
Q ss_pred -------------CCCCCCEEECc--CCcCccccChhhhhcCCCCcEEEccCCeeeeE-----------------eCCCC
Q 044353 43 -------------QIANLEYLDLS--NNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK-----------------INPNW 90 (596)
Q Consensus 43 -------------~l~~L~~L~Ls--~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~ 90 (596)
....++.+.+. +|++++ +|. .|.++++|++|++++|.+++. +|..+
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 11122222222 567776 887 788999999999999998875 78888
Q ss_pred C--CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCc-Ccc-cCChhHHhc-----CCCCcEEEcccccccccCCC
Q 044353 91 V--PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR-ISA-KIPRGFWNS-----IFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 91 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~ 161 (596)
. .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+... +++|++|++++|+++ .+|.
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 8 89999999999999888889899999999999999998 887 788777542 378999999999887 4544
Q ss_pred --CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCC-CcEEEcccc
Q 044353 162 --FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRMLNLGNN 237 (596)
Q Consensus 162 --~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n 237 (596)
.+... .. +.+++++|.+.|.++ . ++.+++|+.|++++|.+. .+|..+..+++ |++|++++|
T Consensus 323 ~~~l~~l---------~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 323 ETSLQKM---------KKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp HHHHTTC---------TTCCEEECCSCCCEEECC-C----CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred hhhhccC---------CCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 33322 22 667777777776665 2 334678888888888887 56777888887 888888888
Q ss_pred cccccCCccCcCCC--CCcEEEccCCcccccCChhhc-------CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353 238 NFTGSLPMSIGALN--SLMSLNLRNNRLSGIIPTSFR-------NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308 (596)
Q Consensus 238 ~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 308 (596)
.++ .+|..+..++ +|+.|++++|.+.+..|..+. .+++|++|++++|.+. .+|..++..+++|++|+++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence 887 6777776654 788888888888877777777 6778888888888887 7777777667888888888
Q ss_pred CCcCcCcCCcc-cCCC-------CCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353 309 SNKFHGDFPIQ-LCRL-------GSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT 380 (596)
Q Consensus 309 ~n~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (596)
+|.++ .+|.. +... ++|++|++++|.++ .+|..+..
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------- 509 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------- 509 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------
Confidence 88887 44443 3322 27888888888887 56655430
Q ss_pred ccceeecccccccccEEEccCCcccccCCccccCcccCCeeec------cCccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL------SHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454 (596)
Q Consensus 381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 454 (596)
..+++|+.|+|++|.+++ +|..+..+++|++|+| ++|++.+.+|..++.+++|++|+|++|++.
T Consensus 510 --------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 579 (636)
T 4eco_A 510 --------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR- 579 (636)
T ss_dssp --------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-
T ss_pred --------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-
Confidence 014457888888888886 7888888888888888 457777788888888888888888888884
Q ss_pred cCCccccCCCCCCEEecccccCccC
Q 044353 455 QIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 455 ~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
.+|..+. ++|+.|++++|++.+.
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ccCHhHh--CcCCEEECcCCCCccc
Confidence 6666554 7888888888888754
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-44 Score=386.80 Aligned_cols=458 Identities=21% Similarity=0.199 Sum_probs=368.6
Q ss_pred eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353 3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82 (596)
Q Consensus 3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 82 (596)
+-++.+++ .+|..+. +++++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|.+
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcC
Confidence 34445555 4565543 57999999999999888889999999999999999998 56555899999999999999999
Q ss_pred eeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcc-cCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 83 VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA-KIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
+...+..|..+++|++|++++|++.+..+..++++++|++|++++|.+++ .+|..+ ..+++|++|++++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHH
Confidence 99888999999999999999999987777679999999999999999986 357766 4489999999999998765443
Q ss_pred CCCCCCCccccCCCC--CceEEcccCccccccccccccCCCCCCCccEEeCcCC--------------------------
Q 044353 162 FDSPSVPLITTPSLL--GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN-------------------------- 213 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~--~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n-------------------------- 213 (596)
.+.. ++.++ ...+++++|.+.+..+..+.. .+|+.|++++|
T Consensus 168 ~~~~------l~~L~~~~~~L~l~~n~l~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 168 DLRV------LHQMPLLNLSLDLSLNPMNFIQPGAFKE-----IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp GGHH------HHTCTTCCCEEECTTCCCCEECTTTTTT-----CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred Hccc------hhccchhhhhcccCCCCceecCHHHhcc-----CcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 2221 11111 156899999988765543322 25777776665
Q ss_pred --------------------------------cCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 214 --------------------------------HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 214 --------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
.+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESC
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccC
Confidence 333445666777888999999999887 677778777 8999999999
Q ss_pred cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcC--CcccCCCCCCcEEeCCCCcCccc
Q 044353 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGT 339 (596)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~ 339 (596)
.+.. .|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+.
T Consensus 315 ~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 388 (570)
T 2z63_A 315 KFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388 (570)
T ss_dssp BCSS-CCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred cccc-cCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence 8883 333 4678899999999988755554 36889999999999887543 56788889999999999998854
Q ss_pred CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCC
Q 044353 340 IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ 419 (596)
Q Consensus 340 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 419 (596)
+..+..++.|+.++++.+...... ....+..+++|++|++++|.+.+..|..|.++++|+
T Consensus 389 -~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 389 -SSNFLGLEQLEHLDFQHSNLKQMS-------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp -EEEEETCTTCCEEECTTSEEESCT-------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred -cccccccCCCCEEEccCCcccccc-------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 444888999999888765321110 012345688999999999999988999999999999
Q ss_pred eeeccCccCc-ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCC
Q 044353 420 SLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGN 497 (596)
Q Consensus 420 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n 497 (596)
+|+|++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+++.+|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999997 578999999999999999999999988999999999999999999999887754 67888999999999
Q ss_pred C-CCCCCC
Q 044353 498 D-LCGAPL 504 (596)
Q Consensus 498 ~-lc~~~~ 504 (596)
+ .|.++.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 9 666553
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-44 Score=397.52 Aligned_cols=429 Identities=18% Similarity=0.237 Sum_probs=320.4
Q ss_pred CeeecCCCccccCCccccCCCCCCEEEC-cCCcccccCCccC--------------------------------------
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDL-SNNTVNGPIPLSL-------------------------------------- 41 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~l-s~n~i~~~~~~~~-------------------------------------- 41 (596)
.|+|++|++.|.+|++++++++|++|+| ++|.+++..|...
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 3799999999999999999999999999 8888776522110
Q ss_pred -------------cCCCCCCEEECcC--CcCccccChhhhhcCCCCcEEEccCCeeee-----------------EeCCC
Q 044353 42 -------------GQIANLEYLDLSN--NKLNGTVSEIHFLNLTQLLVFRAHGNSLVF-----------------KINPN 89 (596)
Q Consensus 42 -------------~~l~~L~~L~Ls~--n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~ 89 (596)
.....++.+.+.. |++++ +|. .|.++++|++|+|++|.+++ .+|..
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 1122334444433 77775 887 79999999999999999988 37777
Q ss_pred CC--CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCc-Ccc-cCChhHHh------cCCCCcEEEcccccccccC
Q 044353 90 WV--PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR-ISA-KIPRGFWN------SIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 90 ~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~~------~l~~L~~L~l~~n~l~~~~ 159 (596)
+. .+++|++|+|++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+.. .+++|++|++++|+++ .+
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 77 99999999999999999999999999999999999998 887 78876643 2348999999999987 55
Q ss_pred CC--CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCC-CcEEEcc
Q 044353 160 PK--FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRMLNLG 235 (596)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~ 235 (596)
|. .+... .. +.+++++|.+. .++ .++.+++|+.|++++|.+. .+|..+..+++ |+.|+++
T Consensus 564 p~~~~l~~L---------~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 564 PASASLQKM---------VKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CCHHHHTTC---------TTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred CChhhhhcC---------CCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 54 33322 22 67888888776 433 4556788888888888887 57777888887 8888888
Q ss_pred cccccccCCccCcCCCC--CcEEEccCCcccccCChhh---c--CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353 236 NNNFTGSLPMSIGALNS--LMSLNLRNNRLSGIIPTSF---R--NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308 (596)
Q Consensus 236 ~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 308 (596)
+|.++ .+|..+..++. |+.|++++|.+.+..|... . .+++|+.|++++|.+. .+|..++..+++|+.|+++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS 705 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence 88887 67777766544 8888888888876554322 2 3457888888888887 7888777677888888888
Q ss_pred CCcCcCcCCcccCC--------CCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353 309 SNKFHGDFPIQLCR--------LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT 380 (596)
Q Consensus 309 ~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (596)
+|.++ .+|..+.. +++|+.|++++|+++ .+|..+..
T Consensus 706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~---------------------------------- 749 (876)
T 4ecn_A 706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA---------------------------------- 749 (876)
T ss_dssp SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------------
T ss_pred CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------------
Confidence 88887 45543332 227888888888887 56655430
Q ss_pred ccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccC------ccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSH------NLFTGRIPDNIGVMRSIESLDFSANQLSG 454 (596)
Q Consensus 381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 454 (596)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..++.+++|+.|+|++|++ +
T Consensus 750 --------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 750 --------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp --------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred --------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 124558889999999986 788888899999998876 778888898899999999999999999 4
Q ss_pred cCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC
Q 044353 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND 498 (596)
Q Consensus 455 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~ 498 (596)
.+|..+. ++|+.||+++|++...-+.. ..........+.+|+
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 6776654 68999999999886543322 112223344555554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-44 Score=384.45 Aligned_cols=443 Identities=17% Similarity=0.163 Sum_probs=294.2
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..|..|+++++|++|++++|++++..|.+|..+++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCC
Confidence 3788888888888888888889999999988888877788888888999999888887 455546888888888888888
Q ss_pred eeeeE-eCCCCCCCCCccEEEccCCCCCCCc-chhhcCCCCCcEEEcccCcCcccCChhHHh------------------
Q 044353 81 SLVFK-INPNWVPPFQLAFLELRSCHLGPRF-PLWLQSQKKLYYLDISSTRISAKIPRGFWN------------------ 140 (596)
Q Consensus 81 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~------------------ 140 (596)
.++.. .+..+..+++|++|++++|.+.+.+ +..++++++|++|++++|.+++..|..+..
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 88753 4567788888888888888743333 456788888888888888887666554422
Q ss_pred -----cCCCCcEEEcccccccccCCC--CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcC
Q 044353 141 -----SIFQYDYLNVSGNQIYGGVPK--FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK 212 (596)
Q Consensus 141 -----~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 212 (596)
.+++|++|++++|++++.... .... .... +.+++++|.+.+..+..+...+..+++++.+++++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDE--------VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC--------CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred hhhHhhcccccEEEccCCccccccccccchhh--------hhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 234444444444444332100 0000 0111 45555555555544444444444556666666666
Q ss_pred CcCCCCC------CcccCCCCCCcEEEccccccccc-----CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 213 NHFSEDI------PDCWMNWPRLRMLNLGNNNFTGS-----LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 213 n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
|.+.+.. ...+..+++|+.|++.++.+... .+..+...++|+.|++++|.+..+....+..+++|++|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 6554421 12234556666677666655421 111122345677777777777643333335677788888
Q ss_pred ccCCcccccCchhh--hhhcccccEEEccCCcCcCcCC--cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353 282 MGENELVGNIPTWI--GETFSRLMILNLRSNKFHGDFP--IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357 (596)
Q Consensus 282 L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 357 (596)
+++|.+.+.+|... ...+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|+.++++.
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence 88887765554321 2256778888888887764322 34677777888888888777 6777777777777777776
Q ss_pred CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 437 (596)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 437 (596)
+....... ...++|+.|++++|.+++.. ..+++|++|+|++|+++ .+|. ..
T Consensus 420 N~l~~l~~-----------------------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 420 TGIRVVKT-----------------------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp SCCSCCCT-----------------------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred CCcccccc-----------------------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 54321111 11246788888888887532 46778888888888887 5665 45
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353 438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 438 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
.+++|++|+|++|++++.+|..+..+++|+.|++++|++.|.||.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 678888888888888877777788888888888888888887764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-43 Score=384.51 Aligned_cols=426 Identities=18% Similarity=0.242 Sum_probs=302.8
Q ss_pred CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCc------c------ccChh--------------------hh--
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN------G------TVSEI--------------------HF-- 66 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~--------------------~~-- 66 (596)
.+++.|+|+++.+++.+|.+++++++|++|+|++|.+. + .+|.. .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999751 1 01100 00
Q ss_pred -----------------hcCCCCcEEEcc--CCeeeeEeCCCCCCCCCccEEEccCCCCCCC-----------------c
Q 044353 67 -----------------LNLTQLLVFRAH--GNSLVFKINPNWVPPFQLAFLELRSCHLGPR-----------------F 110 (596)
Q Consensus 67 -----------------~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~ 110 (596)
.....++.+.+. .|.+++ +|..+..+++|++|++++|++++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 001122222222 578888 888999999999999999999985 8
Q ss_pred chhhc--CCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc-ccc-cCCCCCCCCCCccccCCCCCceEEcccCc
Q 044353 111 PLWLQ--SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ-IYG-GVPKFDSPSVPLITTPSLLGSIFDLSNNA 186 (596)
Q Consensus 111 ~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~~~~~~l~ls~n~ 186 (596)
|..++ ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..|..+....
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~------------------- 299 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALA------------------- 299 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------------
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhh-------------------
Confidence 88988 999999999999999999998775 48999999999998 876 5553322100
Q ss_pred cccccccccccCCCCCCCccEEeCcCCcCCCCCCc--ccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccc
Q 044353 187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPD--CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS 264 (596)
Q Consensus 187 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 264 (596)
.+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++.+| .+..+++|++|++++|.+.
T Consensus 300 -----------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 300 -----------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp -----------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred -----------ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 0011356666666666666 4555 56666666666666666665666 6666666666666666666
Q ss_pred ccCChhhcCCCC-CCEEEccCCcccccCchhhhh-hcccccEEEccCCcCcCcCCcccC-------CCCCCcEEeCCCCc
Q 044353 265 GIIPTSFRNLSI-LKALDMGENELVGNIPTWIGE-TFSRLMILNLRSNKFHGDFPIQLC-------RLGSLQILDVAYNS 335 (596)
Q Consensus 265 ~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~ 335 (596)
..|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 45555666666 666666666665 56654431 123566666666666666665555 55566666666666
Q ss_pred CcccCCcc-ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc-
Q 044353 336 LSGTIPRC-INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT- 413 (596)
Q Consensus 336 l~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~- 413 (596)
++ .+|.. +..++.|+.++++.+........... ........+++|+.|++++|.++ .+|..+.
T Consensus 445 l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 445 IS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-------------DENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-------------ETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred cC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-------------cccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 66 34433 33466666666665543311111000 00000123458999999999999 7888886
Q ss_pred -CcccCCeeeccCccCcccCCccccCCCCCCEEEC------CCCcCcccCCccccCCCCCCEEecccccCccCCCCCCcc
Q 044353 414 -NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF------SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 486 (596)
Q Consensus 414 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 486 (596)
.+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|.. ..
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~ 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh
Confidence 99999999999999996 8999999999999999 56888889999999999999999999999 677765 33
Q ss_pred CccccccccCCC-CC
Q 044353 487 QSFGASSFAGND-LC 500 (596)
Q Consensus 487 ~~l~~~~~~~n~-lc 500 (596)
+.++.+++++|+ .|
T Consensus 587 ~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTCCEEECCSCTTCE
T ss_pred CcCCEEECcCCCCcc
Confidence 789999999998 45
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-43 Score=378.13 Aligned_cols=454 Identities=17% Similarity=0.186 Sum_probs=339.2
Q ss_pred eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353 3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82 (596)
Q Consensus 3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 82 (596)
|.++++++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|.+
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCcc
Confidence 66788888 5666554 89999999999999888999999999999999999998 45444899999999999999999
Q ss_pred eeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 83 VFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
.+..+..|..+++|++|++++|.+.+ ..+..++++++|++|++++|.+.+.++...+..+++|++|++++|++++..+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 88777779999999999999999986 35678999999999999999855567655556689999999999999987777
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCC--C-cccCCCCCCcEEEccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDI--P-DCWMNWPRLRMLNLGNNN 238 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~ 238 (596)
.+...... +.++++.|.+... +..+ ++.+++|+.|++++|.+.+.. + .....+++|+.|++++|.
T Consensus 167 ~l~~l~~L--------~~L~l~~n~~~~~-~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 167 SLKSIRDI--------HHLTLHLSESAFL-LEIF---ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TTTTCSEE--------EEEEEECSBSTTH-HHHH---HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred hhhccccC--------ceEecccCccccc-chhh---HhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 66543221 5566666554321 1111 112456666666666665431 1 112234455555555554
Q ss_pred ccccCC----------------------------------ccCcCCCCCcEEEccCCccccc-----CChhhcCCCCCCE
Q 044353 239 FTGSLP----------------------------------MSIGALNSLMSLNLRNNRLSGI-----IPTSFRNLSILKA 279 (596)
Q Consensus 239 l~~~~~----------------------------------~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~ 279 (596)
+++..+ ..+..+++|+.|++.++.+... .+..+...++|+.
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence 442111 1233445555555555544321 1222344578999
Q ss_pred EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCCCCcCcccCC--ccccccccCcccC
Q 044353 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVAYNSLSGTIP--RCINNFSAMATTD 354 (596)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~ 354 (596)
|++++|.+. .+|..++..+++|++|++++|.+++..| ..+..+++|++|++++|++++..+ ..+..+++|+.++
T Consensus 315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 999999987 8998887679999999999999987654 346788999999999999985432 4588899999999
Q ss_pred CCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCc
Q 044353 355 SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD 434 (596)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 434 (596)
++.+..... +.....+++|+.|++++|.++ .+|..+ .++|++|+|++|++++.+
T Consensus 394 Ls~N~l~~l---------------------p~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-- 447 (549)
T 2z81_A 394 ISRNTFHPM---------------------PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-- 447 (549)
T ss_dssp CTTCCCCCC---------------------CSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC--
T ss_pred CCCCCCccC---------------------ChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc--
Confidence 988754321 112344788999999999997 444443 268999999999998643
Q ss_pred cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC-CCCCC
Q 044353 435 NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 435 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+.+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|.. ..++.++.+++++|+ .|.++
T Consensus 448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999999 5565 467899999999999999887764 678889999999999 67655
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=375.38 Aligned_cols=454 Identities=17% Similarity=0.167 Sum_probs=302.3
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+||+++|+++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCC
Confidence 4899999999 5777666 9999999999999988888999999999999999999854454 8999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC--cEEEcccccc--
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY--DYLNVSGNQI-- 155 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~l-- 155 (596)
.++... .. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++. . +..+++| ++|++++|.+
T Consensus 80 ~l~~lp-~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLVKIS-CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCCEEE-CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTT
T ss_pred ceeecC-cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccc
Confidence 998544 33 89999999999999987 4678999999999999999999752 2 3446788 9999999998
Q ss_pred cccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCc-------CCCCCCcccCCCCC
Q 044353 156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNH-------FSEDIPDCWMNWPR 228 (596)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~ 228 (596)
.+..+..+..... ....+++++|.+.+..+. ..+..+++|+.|++++|. +.+.++ .+..+++
T Consensus 153 ~~~~~~~l~~l~~-------~~l~l~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 153 EKEDPEGLQDFNT-------ESLHIVFPTNKEFHFILD---VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp SSCCTTTTTTCCE-------EEEEEECCSSSCCCCCCC---CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred ccccccccccccc-------ceEEEEeccCcchhhhhh---hhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 6655555443210 013456666666654332 233446777777777775 444343 4666677
Q ss_pred CcEEEcccccccccCCccCc---CCCCCcEEEccCCcccccCChhh-----cCCCCCCEEEccCCcccccCc-hhhhhhc
Q 044353 229 LRMLNLGNNNFTGSLPMSIG---ALNSLMSLNLRNNRLSGIIPTSF-----RNLSILKALDMGENELVGNIP-TWIGETF 299 (596)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~l 299 (596)
|+.|++++|.+++..+..+. ..++|++|++++|.+.+..|..+ ..+++|+.+++++|.+ .+| .+++ .+
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~-~~ 298 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY-EI 298 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH-HH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh-cc
Confidence 77777776665532211111 13466777777777666666655 6666667777776666 455 3333 22
Q ss_pred ---ccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353 300 ---SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376 (596)
Q Consensus 300 ---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 376 (596)
.+|+.|++++|.+.... ....+++|++|++++|.+++.+|..+..++.|+.++++.+......
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------ 364 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------------ 364 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------------
T ss_pred cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------------
Confidence 44666666666654321 1245666666666666666666666666666666666655432100
Q ss_pred EEEeccceeecccccccccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455 (596)
Q Consensus 377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 455 (596)
..+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .
T Consensus 365 ------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 365 ------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp ------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred ------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 0111223456667777777777653443 366666777777777766655555443 56777777777766 5
Q ss_pred CCccccCCCCCCEEecccccCccCCCC-CCccCccccccccCCC-CCCC
Q 044353 456 IPQSMSNLSFLNYLNLSNNNLNGEIPS-STQLQSFGASSFAGND-LCGA 502 (596)
Q Consensus 456 ~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~l~~~~~~~n~-lc~~ 502 (596)
+|..+..+++|+.|++++|+++...+. ...++.++.+++++|+ .|.+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 555555667777777777766643332 2445566666666666 4443
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-41 Score=369.40 Aligned_cols=449 Identities=21% Similarity=0.185 Sum_probs=345.5
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|||++|+|++..+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTS
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCC
Confidence 4899999999888889999999999999999999888889999999999999999998 777768999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCC----CcEEEcccccc
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQ----YDYLNVSGNQI 155 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l~~n~l 155 (596)
.++...+..|..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+. .+.+ ...++++.|.+
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcc
Confidence 9988777789999999999999999876 4577888999999999999999866555442 2322 34677777776
Q ss_pred cccCCCCCCCCCC-ccc--------------cCCCCC-------------------------------------------
Q 044353 156 YGGVPKFDSPSVP-LIT--------------TPSLLG------------------------------------------- 177 (596)
Q Consensus 156 ~~~~~~~~~~~~~-~~~--------------~~~~~~------------------------------------------- 177 (596)
....+..+..... .+. +..+..
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 5543332221100 000 000000
Q ss_pred ---------------ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc
Q 044353 178 ---------------SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS 242 (596)
Q Consensus 178 ---------------~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (596)
..+++..+.+.. ...+.....++.|++.+|.+.+..+. .++.|+.+++.+|.....
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEE------CGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB
T ss_pred cccchhhhhhhhccccccccccccccc------ccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC
Confidence 111111111111 11233456899999999988765443 467789999999887643
Q ss_pred CCccCcCCCCCcEEEccCCcccc--cCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcC-Ccc
Q 044353 243 LPMSIGALNSLMSLNLRNNRLSG--IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF-PIQ 319 (596)
Q Consensus 243 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 319 (596)
.....+++|+.|++++|.+.. ..+..+..+.+|+.+++..+... ..+..+. .+++|+.+++..+...... +..
T Consensus 365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCT
T ss_pred --cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhccccccccccc
Confidence 234578999999999998863 45667778899999999999886 4444444 6899999999988766443 346
Q ss_pred cCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEc
Q 044353 320 LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI 399 (596)
Q Consensus 320 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 399 (596)
+..+++++.++++.|.+.+..+..+..++.++.++++.+... ....+..+..+++|++|+|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~-------------------~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-------------------ENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-------------------GGEECSCCTTCTTCCEEEC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccc-------------------cccCchhhhhccccCEEEC
Confidence 788999999999999999888888888888888888765321 1122334556788999999
Q ss_pred cCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCcc
Q 044353 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNG 478 (596)
Q Consensus 400 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~ 478 (596)
++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|+.+..+ ++|++|++++|++.|
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999998888899999999999999999998888889999999999999999998888888888 579999999999999
Q ss_pred CCCCC
Q 044353 479 EIPSS 483 (596)
Q Consensus 479 ~~~~~ 483 (596)
.|...
T Consensus 582 ~C~~~ 586 (635)
T 4g8a_A 582 TCEHQ 586 (635)
T ss_dssp SGGGH
T ss_pred cCCcH
Confidence 88754
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-41 Score=356.92 Aligned_cols=389 Identities=17% Similarity=0.169 Sum_probs=304.3
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
++.++++++ .+|. + .++|++|++++|.+++..|.+|.++++|++|++++|.+.+.++...|.++++|++|++++|.
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 455666666 3454 2 37899999999999988899999999999999999998777876689999999999999999
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchh--hcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLW--LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV 159 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (596)
++...+..|..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+++..|..++..+++|++|++++|++++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 99888899999999999999999998755555 8899999999999999987778776677889999999999886554
Q ss_pred CCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc--------CCCCCCcE
Q 044353 160 PKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW--------MNWPRLRM 231 (596)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~ 231 (596)
+..+... ...+++.|++++|.+.+..+..+ ..+++|++
T Consensus 171 ~~~l~~l----------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 171 EEDLLNF----------------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp TTTSGGG----------------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred hhhhhcc----------------------------------ccccccccccccCcccccchhhccccccccccccceeee
Confidence 4332210 02477888888888776544332 24456777
Q ss_pred EEcccccccccCCccCcCC---CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh-hhcccccEEEc
Q 044353 232 LNLGNNNFTGSLPMSIGAL---NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG-ETFSRLMILNL 307 (596)
Q Consensus 232 L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L 307 (596)
|++++|.+++..|..+... ++|+.|++++|...+... ..+.+.+..+..+. -..++|++|++
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred EecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEe
Confidence 7777776665555544332 566666666665543211 01111111111111 02468999999
Q ss_pred cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY 387 (596)
Q Consensus 308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (596)
++|.+.+..|..+..+++|++|++++|.+++..|..+..
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------------------- 321 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----------------------------------------- 321 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----------------------------------------
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----------------------------------------
Confidence 999999888889999999999999999998777766655
Q ss_pred ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 044353 388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 467 (596)
Q Consensus 388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 467 (596)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 322 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 322 ---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp ---CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 44488999999999988889999999999999999999988899999999999999999999987778889999999
Q ss_pred EEecccccCccCCCCCCcc
Q 044353 468 YLNLSNNNLNGEIPSSTQL 486 (596)
Q Consensus 468 ~L~ls~N~l~~~~~~~~~~ 486 (596)
.|++++|+++|.||....+
T Consensus 399 ~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 399 KIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp EEECCSSCBCCCTTTTHHH
T ss_pred EEEccCCCcccCCCcchHH
Confidence 9999999999999976443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-42 Score=379.67 Aligned_cols=426 Identities=16% Similarity=0.186 Sum_probs=287.1
Q ss_pred CCCCEEECcCCcccccCCccCcCCCCCCEEEC-cCCcCccccChhhh---------------------------------
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDL-SNNKLNGTVSEIHF--------------------------------- 66 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~--------------------------------- 66 (596)
..++.|+|++|.+++.+|.+++++++|++|+| ++|.+.|..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 88877655221100
Q ss_pred -----------------hcCCCCcEEEccC--CeeeeEeCCCCCCCCCccEEEccCCCCCC-----------------Cc
Q 044353 67 -----------------LNLTQLLVFRAHG--NSLVFKINPNWVPPFQLAFLELRSCHLGP-----------------RF 110 (596)
Q Consensus 67 -----------------~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 110 (596)
.....++.+.+.. |.+++ +|..+..+++|+.|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1122344444443 78888 78899999999999999999998 37
Q ss_pred chhhc--CCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc-ccc-cCCCCCCCCCCccccCCCCC-ceEEcccC
Q 044353 111 PLWLQ--SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ-IYG-GVPKFDSPSVPLITTPSLLG-SIFDLSNN 185 (596)
Q Consensus 111 ~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~~~~-~~l~ls~n 185 (596)
|..++ ++++|+.|++++|.+.+.+|..+. .+++|+.|++++|+ +++ .+|..+..... ....++. +.+++++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~--~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLAD--DEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHH--CTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhh--cccccCCccEEEeeCC
Confidence 88877 999999999999999999997764 48999999999998 876 55532221100 0001111 45555555
Q ss_pred ccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCC-CcEEEccCCccc
Q 044353 186 ALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS-LMSLNLRNNRLS 264 (596)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~ 264 (596)
.+. .++.. ..++.+++|+.|++++|.+. .+| .|..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+.
T Consensus 559 ~L~-~ip~~--~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 559 NLE-EFPAS--ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCC-BCCCH--HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cCC-ccCCh--hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 554 32220 02233555555555555555 344 4555555555555555555 45555555555 555555555555
Q ss_pred ccCChhhcCCCC--CCEEEccCCcccccCchhh---h-hhcccccEEEccCCcCcCcCCcc-cCCCCCCcEEeCCCCcCc
Q 044353 265 GIIPTSFRNLSI--LKALDMGENELVGNIPTWI---G-ETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 265 ~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 337 (596)
..|..+..++. |+.|++++|.+.+.+|... . ..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 34444444332 5555555555554333211 0 01235555555555555 23332 234555555555555555
Q ss_pred ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc--Cc
Q 044353 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT--NL 415 (596)
Q Consensus 338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l 415 (596)
.+|..+..... .....+++|+.|+|++|.++ .+|..+. .+
T Consensus 711 -~ip~~~~~~~~------------------------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 711 -SIPENSLKPKD------------------------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp -CCCTTSSSCTT------------------------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred -ccChHHhcccc------------------------------------ccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 33332211000 00122558999999999999 7888887 99
Q ss_pred ccCCeeeccCccCcccCCccccCCCCCCEEECCC------CcCcccCCccccCCCCCCEEecccccCccCCCCCCccCcc
Q 044353 416 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA------NQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 489 (596)
Q Consensus 416 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l 489 (596)
++|+.|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|.. ..+.+
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L 829 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQL 829 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSS
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCC
Confidence 999999999999996 788999999999999976 888889999999999999999999999 677776 33688
Q ss_pred ccccccCCCC
Q 044353 490 GASSFAGNDL 499 (596)
Q Consensus 490 ~~~~~~~n~l 499 (596)
+.+++++|++
T Consensus 830 ~~LdLs~N~l 839 (876)
T 4ecn_A 830 YILDIADNPN 839 (876)
T ss_dssp CEEECCSCTT
T ss_pred CEEECCCCCC
Confidence 9999999974
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=376.38 Aligned_cols=436 Identities=17% Similarity=0.150 Sum_probs=341.8
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|+|++|++++..|..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++ .+|.. .+++|++|++++|
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N 100 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFN 100 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCC
Confidence 4899999999988899999999999999999999888999999999999999999998 78763 8999999999999
Q ss_pred eeee-EeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCC--cEEEcccCcC--cccCChhHHhcCC-CCcEEEccccc
Q 044353 81 SLVF-KINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL--YYLDISSTRI--SAKIPRGFWNSIF-QYDYLNVSGNQ 154 (596)
Q Consensus 81 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~~~~~l~-~L~~L~l~~n~ 154 (596)
.+++ ..+..|..+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+.. +. ....+++++|+
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEECCSSS
T ss_pred ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc-cccceEEEEeccCc
Confidence 9987 456789999999999999999975 456777788 9999999999 6667765533 22 23356778888
Q ss_pred ccccCCCCCCCCCCccccCCCCC-ceEEcccCc-------cccccccccccCCCCCCCccEEeCcCCcCCCCCCccc---
Q 044353 155 IYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNA-------LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW--- 223 (596)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~-------l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--- 223 (596)
+.+..+...... +.. +.+++++|. +.+.++ .++.+++|+.|++++|.+.+..+..+
T Consensus 177 ~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 177 EFHFILDVSVKT--------VANLELSNIKCVLEDNKCSYFLSILA-----KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CCCCCCCCCCTT--------CSEEEECCEEECCSTTTTHHHHHHHH-----GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred chhhhhhhhhhc--------ccceeeccccccccccccceeecchh-----hhccccchhhccccccccCHHHHHHHHHH
Confidence 776555443322 222 667777775 444332 34457888899988887764322111
Q ss_pred CCCCCCcEEEcccccccccCCccC-----cCCCCCcEEEccCCcccccCChhhcCC---CCCCEEEccCCcccccCchhh
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSI-----GALNSLMSLNLRNNRLSGIIPTSFRNL---SILKALDMGENELVGNIPTWI 295 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~ 295 (596)
...++|++|++++|.+++.+|..+ ..++.|+.+++++|.+ ......+..+ .+|+.|++++|.+. ..+.
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-- 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC-- 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc-cccc--
Confidence 123588899999998888888887 7888888999988888 2332444444 67888999888876 3321
Q ss_pred hhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc--cCCccccccccCcccCCCCCCCCccccCCCCCcee
Q 044353 296 GETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG--TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIV 373 (596)
Q Consensus 296 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 373 (596)
...+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..++.|+.++++.+......+
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-------- 391 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-------- 391 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG--------
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc--------
Confidence 1257888899999998887788888888899999999998886 556778888888888888765432111
Q ss_pred eeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 374 EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
...+..+++|+.|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 392 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 392 -----------KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -----------GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -----------cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 11234478899999999999888777664 79999999999999 78888889999999999999999
Q ss_pred ccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 454 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 454 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
...+..+..+++|+.|++++|+++|.|+..
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 554455999999999999999999988743
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-39 Score=356.90 Aligned_cols=460 Identities=19% Similarity=0.139 Sum_probs=341.7
Q ss_pred cCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCC
Q 044353 12 HLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWV 91 (596)
Q Consensus 12 ~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 91 (596)
.+|..+. +++++|||++|+|+.+.+.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|.++...+..|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 3554442 47999999999999888889999999999999999998 77777999999999999999999988888999
Q ss_pred CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCC----
Q 044353 92 PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSV---- 167 (596)
Q Consensus 92 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~---- 167 (596)
++++|++|++++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|++++..+..+....
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 9999999999999999888888999999999999999997543334456689999999999999876554321100
Q ss_pred --Ccc--------ccCC--CCC---ceEEcccCcccccccccc-------------------------------------
Q 044353 168 --PLI--------TTPS--LLG---SIFDLSNNALSGSIFHLI------------------------------------- 195 (596)
Q Consensus 168 --~~~--------~~~~--~~~---~~l~ls~n~l~~~~~~~~------------------------------------- 195 (596)
... .++. +.. ..+++..|..........
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 000 0110 111 345555543321111000
Q ss_pred -----------------ccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEc
Q 044353 196 -----------------CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258 (596)
Q Consensus 196 -----------------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 258 (596)
...+....+++.+.+..+.+.... .+.....++.|++.+|.+....+ ..+..|+.+++
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l 356 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTF 356 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEE
T ss_pred hhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhccc
Confidence 001111223344444444333211 23344566666666666653322 23456677777
Q ss_pred cCCcccccCChhhcCCCCCCEEEccCCcccc--cCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcC
Q 044353 259 RNNRLSGIIPTSFRNLSILKALDMGENELVG--NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL 336 (596)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 336 (596)
..|.+... .....+++|+.+++++|.+.. ..+.... .+.+|+++++..+... ..+..+..+++|+.+++..++.
T Consensus 357 ~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 357 TSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp ESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEE
T ss_pred ccccCCCC--cccccccccccchhhccccccccccccchh-hhhhhhhhhccccccc-cccccccccccccchhhhhccc
Confidence 77766533 234578999999999998752 3444544 6889999999999887 4556788899999999999887
Q ss_pred cccCC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc-cccCCccccC
Q 044353 337 SGTIP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF-SGEIPVEVTN 414 (596)
Q Consensus 337 ~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~ 414 (596)
....+ ..+..+..+..++++.+..... .......++.++.|++++|.+ .+..|..|..
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~--------------------~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cccccccccccccccccccccccccccc--------------------cccccccchhhhhhhhhhcccccccCchhhhh
Confidence 65544 5677888888888876543222 122345578899999999985 4467889999
Q ss_pred cccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-Ccc-Cccccc
Q 044353 415 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFGAS 492 (596)
Q Consensus 415 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~-~~l~~~ 492 (596)
+++|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+ ..++.+
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999988875 334 578999
Q ss_pred cccCCC-CCCCC
Q 044353 493 SFAGND-LCGAP 503 (596)
Q Consensus 493 ~~~~n~-lc~~~ 503 (596)
++++|| .|+|.
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 999999 78765
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-40 Score=355.16 Aligned_cols=446 Identities=17% Similarity=0.154 Sum_probs=300.7
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
++|+++|++++ +|..+. ++|++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus 35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCC
Confidence 37999999996 776654 89999999999999888889999999999999999998 554448999999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCC-cchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC--cEEEcccccc--
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPR-FPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY--DYLNVSGNQI-- 155 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~l-- 155 (596)
.++. ++.. .+++|++|++++|++.+. .|..++++++|++|++++|.+++.. +..+++| ++|++++|++
T Consensus 111 ~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCC
T ss_pred cCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecccccc
Confidence 9985 4444 799999999999999874 4688999999999999999997532 2334566 9999999998
Q ss_pred cccCCCCCCCCC-----------------CccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC
Q 044353 156 YGGVPKFDSPSV-----------------PLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE 217 (596)
Q Consensus 156 ~~~~~~~~~~~~-----------------~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 217 (596)
++..+..+.... .......+.. +.+++++|...-.........+...++++.++++++.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 655554432211 0000011112 4455555431100000011122335666666666655542
Q ss_pred CC----CcccCCCCCCcEEEcccccccccCCccC-----cCCCCCcEEEccCCcccccCChhhc---CCCCCCEEEccCC
Q 044353 218 DI----PDCWMNWPRLRMLNLGNNNFTGSLPMSI-----GALNSLMSLNLRNNRLSGIIPTSFR---NLSILKALDMGEN 285 (596)
Q Consensus 218 ~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n 285 (596)
.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ ......+. ...+|+.|++++|
T Consensus 264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCC
Confidence 11 111 123467777777777776666655 4455555555555554 11112221 1245667777776
Q ss_pred cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc--cCCccccccccCcccCCCCCCCCcc
Q 044353 286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG--TIPRCINNFSAMATTDSSDPNSGIF 363 (596)
Q Consensus 286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~~~~~~~ 363 (596)
.+. ..+ ....+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.++++.+.....
T Consensus 342 ~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 342 PFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred Ccc-ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 654 221 11245667777777776666666666666777777777776664 2234566666666666665543221
Q ss_pred ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 443 (596)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 443 (596)
.. ...+..+++|+.|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+..+++|+
T Consensus 419 ~~-------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 419 AY-------------------DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp CS-------------------SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred cC-------------------hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 00 11123467799999999999877766554 78999999999998 6777777999999
Q ss_pred EEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353 444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484 (596)
Q Consensus 444 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 484 (596)
+|++++|+++.+.+..+..+++|+.|++++|++.|.|+..+
T Consensus 477 ~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp EEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred EEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 99999999995444458899999999999999999887543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-38 Score=330.96 Aligned_cols=380 Identities=17% Similarity=0.176 Sum_probs=258.5
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe-CCCCCCCCCccEEEcc
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI-NPNWVPPFQLAFLELR 102 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 102 (596)
+.++.+++.++ .+|. + .++|++|+|++|.+++..+. .|.++++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45777777777 3454 2 27889999999988744344 7888888888888888876444 5578888888888888
Q ss_pred CCCCCCCcchhhcCCCCCcEEEcccCcCcccCChh-HHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRG-FWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD 181 (596)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (596)
+|++.+..|..++++++|++|++++|.+++..+.. .+..+++|++|++++|++++..+..+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------ 149 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------------------ 149 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG------------------
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc------------------
Confidence 88887777778888888888888888776533322 12334555555555555432211110
Q ss_pred cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCC--CCCcEEEcccccccccCCccCcCCCCCcEEEcc
Q 044353 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW--PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259 (596)
Q Consensus 182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 259 (596)
+..+++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+..+..
T Consensus 150 -----------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------- 202 (455)
T 3v47_A 150 -----------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------- 202 (455)
T ss_dssp -----------------GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------
T ss_pred -----------------cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------
Confidence 1113455555555555554444444433 34444555554444322211110
Q ss_pred CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhh--cccccEEEccCCcCcC----------cCCcccC--CCCC
Q 044353 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET--FSRLMILNLRSNKFHG----------DFPIQLC--RLGS 325 (596)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~----------~~~~~~~--~l~~ 325 (596)
.....+..+++|++|++++|.+.+..|..+... .++|+.|++++|...+ ..+..+. ..++
T Consensus 203 ------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 203 ------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp ------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred ------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 000012234556666666665554444444321 1456666666553332 1112222 2368
Q ss_pred CcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc
Q 044353 326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405 (596)
Q Consensus 326 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 405 (596)
|+.|++++|.+++..|..+..+ ++|+.|++++|.++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHF--------------------------------------------TDLEQLTLAQNEIN 312 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTC--------------------------------------------TTCCEEECTTSCCC
T ss_pred ceEEEecCccccccchhhcccC--------------------------------------------CCCCEEECCCCccc
Confidence 9999999999998777776654 44899999999999
Q ss_pred ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-C
Q 044353 406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-T 484 (596)
Q Consensus 406 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~ 484 (596)
+..|..|..+++|++|+|++|++++..+..++.+++|++|++++|++++..|..|..+++|++|++++|++++..+.. .
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 888999999999999999999999888999999999999999999999998999999999999999999999766654 5
Q ss_pred ccCccccccccCCC-CCCCC
Q 044353 485 QLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 485 ~~~~l~~~~~~~n~-lc~~~ 503 (596)
.++.++.+++++|+ .|.+|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 78899999999999 67666
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.8e-38 Score=335.90 Aligned_cols=441 Identities=17% Similarity=0.153 Sum_probs=325.6
Q ss_pred CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccE
Q 044353 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAF 98 (596)
Q Consensus 19 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 98 (596)
.+...+++++++|.++. +|..+. ++|++|+|++|.++ .++...|.++++|++|++++|.+++..+.+|..+++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 45556899999999995 676554 89999999999998 566558999999999999999999998999999999999
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEcccCcCccc-CChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353 99 LELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAK-IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177 (596)
Q Consensus 99 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
|++++|+++ .+|.. .+++|++|++++|++++. .|..+ ..+++|++|++++|++++..... ++.+.-
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~---------l~~L~L 171 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLDLLP---------VAHLHL 171 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTTTTGG---------GTTSCE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccCchhh---------hhhcee
Confidence 999999998 45544 799999999999999853 33554 55899999999999986521111 122211
Q ss_pred ceEEcccCcc--cccccccccc----------------------CCCCCCCccEEeCcCCcC-----CCCCCcccCCCCC
Q 044353 178 SIFDLSNNAL--SGSIFHLICQ----------------------GENFSKNIEFLKLSKNHF-----SEDIPDCWMNWPR 228 (596)
Q Consensus 178 ~~l~ls~n~l--~~~~~~~~~~----------------------~l~~~~~L~~L~l~~n~l-----~~~~~~~~~~l~~ 228 (596)
+.++++.|.+ .+..+..+.. .+..+++|+.+++++|.. .+ ....+..+++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~ 250 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPT 250 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSS
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCc
Confidence 6678888777 5544443332 112234455555555431 11 1112344555
Q ss_pred CcEEEccccccccc----CCccCcCCCCCcEEEccCCcccccCChhh-----cCCCCCCEEEccCCcccccCch-hhhhh
Q 044353 229 LRMLNLGNNNFTGS----LPMSIGALNSLMSLNLRNNRLSGIIPTSF-----RNLSILKALDMGENELVGNIPT-WIGET 298 (596)
Q Consensus 229 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~-~~~~~ 298 (596)
|+.++++++.+.+. .+..+ ..++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ .+|. +++..
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~ 327 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV 327 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh
Confidence 55565555544421 11111 23589999999999998777776 6677777777777776 5563 33321
Q ss_pred --cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353 299 --FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376 (596)
Q Consensus 299 --l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 376 (596)
..+|++|++++|.+.... ....+++|++|++++|.+++..|..+.++++|+.++++.+......
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------ 393 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF------------ 393 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT------------
T ss_pred hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc------------
Confidence 257999999999886322 1267899999999999999989999999999999999887543210
Q ss_pred EEEeccceeecccccccccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455 (596)
Q Consensus 377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 455 (596)
..+..+..+++|+.|++++|.+++.+|. .+..+++|++|+|++|++++.+|..+. ++|+.|++++|+++ .
T Consensus 394 ------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ 464 (562)
T 3a79_B 394 ------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-S 464 (562)
T ss_dssp ------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-C
T ss_pred ------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-c
Confidence 1112345688999999999999974554 588999999999999999887777654 79999999999999 5
Q ss_pred CCccccCCCCCCEEecccccCccCCCC-CCccCccccccccCCC-CCCCC
Q 044353 456 IPQSMSNLSFLNYLNLSNNNLNGEIPS-STQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 456 ~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+|..+..+++|+.|++++|+++...+. ...++.++.+++++|+ .|.++
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 666666999999999999999954444 4678889999999999 67654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=326.72 Aligned_cols=346 Identities=21% Similarity=0.202 Sum_probs=211.5
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS 103 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 103 (596)
+.++.++++++ .+|..+. +++++|+|++|+++ .++...|.++++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666665 3444432 46677777777766 33333666666666666666666665556666666666666666
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcc
Q 044353 104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS 183 (596)
Q Consensus 104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls 183 (596)
|+++...+..|.++++|++|++++|.+++..+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--------------------------------------------- 124 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--------------------------------------------- 124 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT---------------------------------------------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHc---------------------------------------------
Confidence 66554444445555555555555555543222211
Q ss_pred cCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc
Q 044353 184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263 (596)
Q Consensus 184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 263 (596)
..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 125 ----------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 125 ----------------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ----------------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ----------------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 1145566666666666655566666777777777777777655555666777777777777777
Q ss_pred cccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCcc
Q 044353 264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343 (596)
Q Consensus 264 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 343 (596)
.+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|.++...+..+..+++|+.|++++|.++
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------ 261 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS------ 261 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC------
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC------
Confidence 766666677777777777777666555665555 3446666666666666333344555555555555555554
Q ss_pred ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeec
Q 044353 344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423 (596)
Q Consensus 344 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 423 (596)
+..+..|..+++|++|+|
T Consensus 262 --------------------------------------------------------------~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 262 --------------------------------------------------------------TIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp --------------------------------------------------------------EECTTSCTTCTTCCEEEC
T ss_pred --------------------------------------------------------------ccChhhccccccCCEEEC
Confidence 344445566666777777
Q ss_pred cCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCC
Q 044353 424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGA 502 (596)
Q Consensus 424 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~ 502 (596)
++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|+..+.+.......+.++. .|..
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 777776666667777777777777777777666666677777777777777777766554444433444455554 5654
Q ss_pred C
Q 044353 503 P 503 (596)
Q Consensus 503 ~ 503 (596)
|
T Consensus 360 p 360 (477)
T 2id5_A 360 P 360 (477)
T ss_dssp S
T ss_pred c
Confidence 4
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-37 Score=320.30 Aligned_cols=383 Identities=21% Similarity=0.278 Sum_probs=196.7
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCC-------------CEEECcCCcCccccChhhhh
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANL-------------EYLDLSNNKLNGTVSEIHFL 67 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~~~ 67 (596)
+|++++|.+ +.+|++++++++|++|++++|.+++.+|.+++.+++| ++|++++|.++ .+|.
T Consensus 15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~---- 88 (454)
T 1jl5_A 15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE---- 88 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----
T ss_pred hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----
Confidence 367778888 6788888888888888888888887788888777654 88888888876 4543
Q ss_pred cCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcE
Q 044353 68 NLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDY 147 (596)
Q Consensus 68 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 147 (596)
-.++|++|++++|.+++ ++. ..++|++|++++|++.+... . .++|++|++++|.+++ +| . +..+++|++
T Consensus 89 ~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-E-LQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCE
T ss_pred CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-c-cCCCCCCCE
Confidence 13678888888887775 332 23678888888887764221 1 1578888888887774 66 3 345677888
Q ss_pred EEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCC
Q 044353 148 LNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWP 227 (596)
Q Consensus 148 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 227 (596)
|++++|++++ .|.... .-+.+++++|.+.+ ++ .++.+++|+.|++++|.+.+ +|.. .+
T Consensus 158 L~l~~N~l~~-lp~~~~-----------~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLPP-----------SLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp EECCSSCCSC-CCCCCT-----------TCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred EECCCCcCcc-cCCCcc-----------cccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence 8888877753 222110 00445555554443 11 13334555555555555443 2211 12
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 307 (596)
+|++|++++|.++ .+| .+..+++|++|++++|.+.+. |. .+++|+.|++++|.+. .+|.. +++|++|++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l 284 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDV 284 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEEC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc-ccCcc----cCcCCEEEC
Confidence 4555555555554 333 244555555555555555432 21 1244555555555544 23321 244555555
Q ss_pred cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY 387 (596)
Q Consensus 308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (596)
++|.+++ ++.. .++|+.|++++|.+++ ++
T Consensus 285 s~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---------------------------------------------- 313 (454)
T 1jl5_A 285 SENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---------------------------------------------- 313 (454)
T ss_dssp CSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----------------------------------------------
T ss_pred cCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----------------------------------------------
Confidence 5554443 1110 1345555555554442 11
Q ss_pred ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcc--cCCccccCC--
Q 044353 388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG--QIPQSMSNL-- 463 (596)
Q Consensus 388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l-- 463 (596)
...++|+.|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 314 -~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 314 -DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred -CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 012468899999999885 5554 578999999999988 5665 46889999999999987 677777766
Q ss_pred -----------CCCCEEecccccCcc--CCCCCCccCccccccccCCC
Q 044353 464 -----------SFLNYLNLSNNNLNG--EIPSSTQLQSFGASSFAGND 498 (596)
Q Consensus 464 -----------~~L~~L~ls~N~l~~--~~~~~~~~~~l~~~~~~~n~ 498 (596)
++|+.|++++|++++ .+|. .+..+.+.+|.
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~ 427 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSER 427 (454)
T ss_dssp CC----------------------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcc
Confidence 789999999999987 4543 34555555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-35 Score=309.12 Aligned_cols=348 Identities=24% Similarity=0.322 Sum_probs=282.0
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353 18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA 97 (596)
Q Consensus 18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 97 (596)
..+++++.|+++++.++. +| .+..+++|++|++++|.++ .++. +.++++|++|++++|.+....+ +..+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 347789999999999885 44 4788999999999999987 4543 8899999999999998876654 88899999
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353 98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177 (596)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
+|++++|.+.+..+ +.++++|++|++++|.+++ ++. +..+++|++|++++ .+.+.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~------------------- 170 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDL------------------- 170 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCC-------------------
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCc-------------------
Confidence 99999999876544 8889999999999998874 332 45578899888853 32110
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 257 (596)
..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 171 -------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 227 (466)
T 1o6v_A 171 -------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227 (466)
T ss_dssp -------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred -------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence 1133478999999999998764 347889999999999999886554 67789999999
Q ss_pred ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+.+. ..+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 228 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 228 LNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred CCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 999998864 468889999999999999974 443 3368999999999999986443 788999999999999987
Q ss_pred ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG 417 (596)
Q Consensus 338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 417 (596)
+..+ +.. +++|+.|++++|.+++..| +..+++
T Consensus 301 ~~~~--~~~--------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 301 DISP--ISN--------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp CCGG--GGG--------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred Cchh--hcC--------------------------------------------CCCCCEEECcCCcCCCchh--hccCcc
Confidence 5332 222 5668999999999986655 788999
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999854 468899999999999999998776 88999999999999999874
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-35 Score=308.21 Aligned_cols=354 Identities=19% Similarity=0.174 Sum_probs=252.3
Q ss_pred ccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC
Q 044353 9 FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP 88 (596)
Q Consensus 9 l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 88 (596)
..+..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++ ++ +.++++|++|++++|.+++.
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---
Confidence 3444566788899999999999999965 5 68899999999999999984 43 78899999999999998864
Q ss_pred CCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCC
Q 044353 89 NWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVP 168 (596)
Q Consensus 89 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 168 (596)
.+..+++|++|++++|++++. + ++.+++|++|++++|++++ ++ +..+++|++|++++|+..+..+
T Consensus 101 ~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~~-------- 165 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKLD-------- 165 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCCC--------
T ss_pred ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccccc--------
Confidence 288899999999999999864 3 8889999999999999986 43 3457889999999885432221
Q ss_pred ccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCc
Q 044353 169 LITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG 248 (596)
Q Consensus 169 ~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 248 (596)
+..+++|+.|++++|.+++. | +..+++|+.|++++|.+++. .+.
T Consensus 166 ------------------------------~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~ 209 (457)
T 3bz5_A 166 ------------------------------VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLN 209 (457)
T ss_dssp ------------------------------CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCT
T ss_pred ------------------------------cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccc
Confidence 12245666666666666652 2 55666666666666666643 256
Q ss_pred CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEE----------EccCCcCcCcCCc
Q 044353 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL----------NLRSNKFHGDFPI 318 (596)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~~~ 318 (596)
.+++|+.|++++|.++++ | +..+++|+.|++++|++++ +|.. .+++|+.| ++++|.+.+.+|
T Consensus 210 ~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred cCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC-cCHH---HCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 666666666666666653 3 5566666666776666653 3321 24444444 444454444443
Q ss_pred ccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEE
Q 044353 319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSID 398 (596)
Q Consensus 319 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 398 (596)
+..+++|+.|++++|...+.+|.. ...++.++++ .+++|+.|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~---------------------------------~~~~L~~L~ 324 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDLS---------------------------------QNPKLVYLY 324 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCCT---------------------------------TCTTCCEEE
T ss_pred -ccccccCCEEECCCCcccceeccC---CCcceEechh---------------------------------hcccCCEEE
Confidence 456677888888887766666642 3344444443 246689999
Q ss_pred ccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353 399 ISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 478 (596)
Q Consensus 399 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 478 (596)
+++|.+++. + +..+++|+.|++++|++++ ++.|..|++++|.+++. ..+..|+.+++++|+++|
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence 999999863 3 8888999999999998874 24566678888888865 244567888999999999
Q ss_pred CCCCC
Q 044353 479 EIPSS 483 (596)
Q Consensus 479 ~~~~~ 483 (596)
.+|..
T Consensus 389 ~ip~~ 393 (457)
T 3bz5_A 389 AVSPD 393 (457)
T ss_dssp ECCTT
T ss_pred EcChh
Confidence 98864
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=308.38 Aligned_cols=275 Identities=18% Similarity=0.158 Sum_probs=190.6
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
++.++++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+ ..|.++++|++|++++|.
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCc
Confidence 456677776 4566553 689999999999998888999999999999999999984445 489999999999999999
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l------ 164 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNL------ 164 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCC------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcC------
Confidence 998777789999999999999999998888999999999999999998875444433 3345555555555544
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (596)
++..+..+..+++|+.|++++|.+.+
T Consensus 165 ------------------------------------------------------~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 165 ------------------------------------------------------TSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp ------------------------------------------------------SSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ------------------------------------------------------cccChhHhcccCCCcEEeCCCCcCcE
Confidence 33333344455555555555555554
Q ss_pred cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
..+..|..+++|+.|++++|...+..+.......+|+.|++++|.++ .+|...+..+++|+.|++++|.+++..+..+.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 44445555555555555555444444444334445666666666665 45544444566666666666666655555566
Q ss_pred CCCCCcEEeCCCCcCcccCCc
Q 044353 322 RLGSLQILDVAYNSLSGTIPR 342 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~~~~ 342 (596)
.+++|+.|++++|.+++..|.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTT
T ss_pred ccccCCEEECCCCccceECHH
Confidence 666666666666665543333
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-34 Score=303.00 Aligned_cols=340 Identities=22% Similarity=0.311 Sum_probs=280.8
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++. .++. +.++++|++|++++|.
T Consensus 51 L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 51 LQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp EECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC
T ss_pred EecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEEECCCCC
Confidence 6788888875 44 48899999999999999997644 899999999999999998 4443 8999999999999999
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
+....+ +..+++|++|++++|.+.+. ..+..+++|+.|++++ .+.+. +. +..+++|++|++++|++++.
T Consensus 124 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~-~~--~~~l~~L~~L~l~~n~l~~~--- 192 (466)
T 1o6v_A 124 ITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL-KP--LANLTTLERLDISSNKVSDI--- 192 (466)
T ss_dssp CCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC-GG--GTTCTTCCEEECCSSCCCCC---
T ss_pred CCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc-hh--hccCCCCCEEECcCCcCCCC---
Confidence 886543 88999999999999998753 2588999999999974 44432 22 45689999999999987421
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (596)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 193 -----------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 193 -----------------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp -----------------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred -----------------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc
Confidence 012237899999999999987655 6778999999999999885
Q ss_pred cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+++..+ +.
T Consensus 236 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GG
T ss_pred c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hc
Confidence 3 467889999999999999986654 889999999999999998 4554 3 368999999999999986543 78
Q ss_pred CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC
Q 044353 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK 401 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 401 (596)
.+++|+.|++++|++++..| +.. +++|+.|++++
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~--------------------------------------------l~~L~~L~l~~ 340 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSS--------------------------------------------LTKLQRLFFYN 340 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGG--------------------------------------------CTTCCEEECCS
T ss_pred CCCCCCEEECcCCcCCCchh--hcc--------------------------------------------CccCCEeECCC
Confidence 89999999999999886443 222 55689999999
Q ss_pred CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353 402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455 (596)
Q Consensus 402 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 455 (596)
|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++.
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999854 478899999999999999997776 88999999999999999963
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-34 Score=296.68 Aligned_cols=335 Identities=19% Similarity=0.224 Sum_probs=221.7
Q ss_pred CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353 43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY 122 (596)
Q Consensus 43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 122 (596)
.++++++|++++|.++ .+|...|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999987 788767899999999999999998887788888999999999999988887888888888888
Q ss_pred EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353 123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202 (596)
Q Consensus 123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~ 202 (596)
|++++|.++ .+|..++..+++|++|++++|++
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l----------------------------------------------- 153 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL----------------------------------------------- 153 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-----------------------------------------------
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCcc-----------------------------------------------
Confidence 888888887 45555444455566655555554
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
.+..+..|..+++|++|++++|.+++. .+..+++|+.|++++|.+.+. ...++|+.|++
T Consensus 154 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l 212 (390)
T 3o6n_A 154 -------------ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 212 (390)
T ss_dssp -------------CBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred -------------CccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence 333333344444444444444444422 123334445555555444422 12234555555
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 213 ~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------- 270 (390)
T 3o6n_A 213 SHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK---------------- 270 (390)
T ss_dssp CSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT----------------
T ss_pred CCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc----------------
Confidence 555554 33322 134556666666655532 34555666666666666666554544443
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 442 (596)
+++|+.|++++|.++ .++..+..+++|++|+|++|+++ .+|..+..+++|
T Consensus 271 ----------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 271 ----------------------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp ----------------------------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred ----------------------------cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 233566666666665 34555677888999999999988 567778888999
Q ss_pred CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+.|++++|.++.. + +..+++|+.|++++|++.|.+.. ..+..+....+.+++ .|..+
T Consensus 321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 9999999999854 2 67788999999999999886433 233444455556665 66543
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-34 Score=286.82 Aligned_cols=258 Identities=31% Similarity=0.576 Sum_probs=240.6
Q ss_pred CCccEEeCcCCcCCC--CCCcccCCCCCCcEEEccc-ccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353 203 KNIEFLKLSKNHFSE--DIPDCWMNWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 279 (596)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8899999999999999995 9999899999999999999999999999999999999999999
Q ss_pred EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC-CCcEEeCCCCcCcccCCccccccccCcccCCCCC
Q 044353 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG-SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP 358 (596)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~ 358 (596)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l----------- 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------- 197 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence 99999999988888877 799999999999999988999999998 99999999999998888777543
Q ss_pred CCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC
Q 044353 359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 438 (596)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 438 (596)
+ |+.|++++|.+++..|..|..+++|+.|+|++|++++.+|. +..
T Consensus 198 ---------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 242 (313)
T 1ogq_A 198 ---------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242 (313)
T ss_dssp ---------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred ---------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence 2 78999999999999999999999999999999999966665 888
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCCCC
Q 044353 439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNC 507 (596)
Q Consensus 439 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~~c 507 (596)
+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|....++.++.+.+.+|+ +|+.|...|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 999999999999999999999999999999999999999999999899999999999999 999887777
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-34 Score=296.35 Aligned_cols=371 Identities=24% Similarity=0.262 Sum_probs=203.4
Q ss_pred CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCC-------------cEEEccCCeeeeE
Q 044353 19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQL-------------LVFRAHGNSLVFK 85 (596)
Q Consensus 19 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 85 (596)
+.++|++|++++|.+ +.+|.+++++++|++|++++|++.|.+|. .++++.+| ++|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 568999999999999 58899999999999999999999888887 78887765 7777777776542
Q ss_pred eCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCC
Q 044353 86 INPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165 (596)
Q Consensus 86 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 165 (596)
. . -.++|++|++++|.+++ +|.. .++|+.|++++|.+++ ++.. .++|++|++++|++++ .|. +..
T Consensus 87 p-~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp~-~~~ 151 (454)
T 1jl5_A 87 P-E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LPE-LQN 151 (454)
T ss_dssp C-S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CCC-CTT
T ss_pred C-C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Ccc-cCC
Confidence 2 1 13567777777777765 3432 3677777777777763 3321 2567777777777654 231 111
Q ss_pred CCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCC
Q 044353 166 SVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP 244 (596)
Q Consensus 166 ~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 244 (596)
+.. +.+++++|.+++ ++.. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|
T Consensus 152 ---------l~~L~~L~l~~N~l~~-lp~~-------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 152 ---------SSFLKIIDVDNNSLKK-LPDL-------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp ---------CTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred ---------CCCCCEEECCCCcCcc-cCCC-------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence 111 555555555543 1111 2355555555555554 23 35555555555555555553 23
Q ss_pred ccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC
Q 044353 245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG 324 (596)
Q Consensus 245 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 324 (596)
... ++|++|++++|.+. ..| .+..+++|++|++++|++. .+|.. +++|++|++++|.+++ +|.. .+
T Consensus 212 ~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 212 DLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---cC
Confidence 221 35555555555555 233 2555555555555555554 33321 2455555555555553 3322 24
Q ss_pred CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353 325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF 404 (596)
Q Consensus 325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 404 (596)
+|++|++++|.+++ +|. ..++|+.|++++|.+
T Consensus 278 ~L~~L~ls~N~l~~-l~~-----------------------------------------------~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSE-----------------------------------------------LPPNLYYLNASSNEI 309 (454)
T ss_dssp TCCEEECCSSCCSE-ESC-----------------------------------------------CCTTCCEEECCSSCC
T ss_pred cCCEEECcCCccCc-ccC-----------------------------------------------cCCcCCEEECcCCcC
Confidence 55555555555542 110 124589999999999
Q ss_pred cccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc--CCCC
Q 044353 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG--EIPS 482 (596)
Q Consensus 405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~ 482 (596)
++ ++. -.++|++|++++|++++ +|.. +++|++|++++|+++. +|. .+++|++|++++|++++ .+|.
T Consensus 310 ~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 310 RS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp SE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred Cc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 85 222 12589999999999985 6654 5899999999999994 555 47899999999999998 5554
Q ss_pred C-Ccc-------------CccccccccCCCCC
Q 044353 483 S-TQL-------------QSFGASSFAGNDLC 500 (596)
Q Consensus 483 ~-~~~-------------~~l~~~~~~~n~lc 500 (596)
. ..+ +.++.+++++|++.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp TCCEEECCC-----------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 3 223 45666677777643
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=303.83 Aligned_cols=335 Identities=19% Similarity=0.221 Sum_probs=229.5
Q ss_pred CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353 43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY 122 (596)
Q Consensus 43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 122 (596)
.+.+++.+++++|.+. .+|...|.++++|++|++++|.+....+..|..+++|++|+|++|.+.+..+..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578899999999887 777767888999999999999988887778888888899999888888877778888888888
Q ss_pred EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353 123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202 (596)
Q Consensus 123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~ 202 (596)
|++++|.++ .+|..++..+++|++|++++|.
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~------------------------------------------------ 158 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN------------------------------------------------ 158 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC------------------------------------------------
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCc------------------------------------------------
Confidence 888888877 4555444444555555555544
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
+.+..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.+. ...++|+.|++
T Consensus 159 ------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l 218 (597)
T 3oja_B 159 ------------LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 218 (597)
T ss_dssp ------------CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred ------------CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence 44444444555555555555555554321 23345555555555555432 22345566666
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
++|.+. .++... .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+
T Consensus 219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------- 277 (597)
T 3oja_B 219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--------------- 277 (597)
T ss_dssp CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC---------------
T ss_pred cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc---------------
Confidence 666554 333322 2456666666666654 2456666677777777777766556555443
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 442 (596)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|
T Consensus 278 -----------------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 278 -----------------------------QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp -----------------------------SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred -----------------------------cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 336667777777764 4556677889999999999998 677778889999
Q ss_pred CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+.|+|++|.+++.. +..+++|+.|++++|++.|.+... .+..+....+.+++ .|+.+
T Consensus 327 ~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 327 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 99999999998553 677889999999999998875432 34455555666776 77654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-33 Score=292.27 Aligned_cols=341 Identities=19% Similarity=0.175 Sum_probs=239.0
Q ss_pred CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+|++++|.+++. | .++.+++|++|++++|.+++. | +..+++|++|++++|++++ ++ +.++++|++|++++|
T Consensus 46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTN 116 (457)
T ss_dssp EEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSS
T ss_pred EEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCC
Confidence 379999999975 5 799999999999999999975 4 8899999999999999984 43 889999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP 160 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (596)
.+++. .+..+++|++|++++|++++. .++++++|+.|++++|...+.++ +..+++|++|++++|++++. +
T Consensus 117 ~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~ 186 (457)
T 3bz5_A 117 KLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D 186 (457)
T ss_dssp CCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C
T ss_pred cCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c
Confidence 99874 288999999999999999874 38899999999999996544553 34578999999999998652 1
Q ss_pred CCCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccc
Q 044353 161 KFDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239 (596)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (596)
+. .++. +.+++++|.+++. .++.+++|+.|++++|.+++ +| +..+++|+.|++++|.+
T Consensus 187 --l~---------~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 --VS---------QNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp --CT---------TCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred --cc---------cCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 11 1111 4455555555442 13334555555555555554 23 44555555555555555
Q ss_pred cccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc-
Q 044353 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI- 318 (596)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 318 (596)
++.. +..+++|+.|++++| +|+.+++++|...+.+|. ..+++|+.|++++|...+.+|.
T Consensus 246 ~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 246 TELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp SCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECT
T ss_pred CCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccC
Confidence 5332 223334444443332 344455555555444542 2456677777777655444332
Q ss_pred -------ccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccccc
Q 044353 319 -------QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL 391 (596)
Q Consensus 319 -------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (596)
.+..+++|++|++++|++++. + +++ +
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~--------------------------------------------l 338 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSH--------------------------------------------N 338 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTT--------------------------------------------C
T ss_pred CCcceEechhhcccCCEEECCCCccccc-c--ccc--------------------------------------------C
Confidence 244557888888888888752 2 322 5
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 461 (596)
++|+.|++++|++++ ++.|+.|++++|.+.|. +.+..|+.+++++|++++.+|..+.
T Consensus 339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 568999999999985 35678889999998865 3556788899999999998887553
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-32 Score=274.82 Aligned_cols=196 Identities=24% Similarity=0.371 Sum_probs=107.6
Q ss_pred cCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccc
Q 044353 223 WMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRL 302 (596)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 302 (596)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+. .++. +..+++|
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L 223 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRL 223 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcC
Confidence 3444444444444444432211 3444444555555544443222 444555555555555554 2222 1234555
Q ss_pred cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353 303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382 (596)
Q Consensus 303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (596)
++|++++|.+++..+ +..+++|++|++++|.+++. ..+.
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~------------------------------------- 262 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK------------------------------------- 262 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT-------------------------------------
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh-------------------------------------
Confidence 555555555543222 55555666666666555421 1111
Q ss_pred ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
.+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..++.+++|++|++++|.+++..| +..
T Consensus 263 -------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 263 -------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp -------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred -------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 133456666666666532 346677778888888887777777777778888888888888776555 677
Q ss_pred CCCCCEEecccccCc
Q 044353 463 LSFLNYLNLSNNNLN 477 (596)
Q Consensus 463 l~~L~~L~ls~N~l~ 477 (596)
+++|+.|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 788888888888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-32 Score=277.81 Aligned_cols=304 Identities=20% Similarity=0.191 Sum_probs=247.2
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
|++++|.++...+..+..+++|++|++++|.+++..+.+|..+++|++|+|++|+++ .++...|.++++|++|++++|.
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCc
Confidence 678888888665666788999999999999998877778899999999999999988 4544478889999999999998
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
+....+..|..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++. + ...+++|++|++++|.+++....
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEEECC
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeecccccccccCCC
Confidence 8866666678889999999999998888788888899999999999988753 3 23468899999998887643211
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (596)
. .-+.+++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 205 ~-------------~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 205 I-------------AVEELDASHNSINVVRG-------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp S-------------SCSEEECCSSCCCEEEC-------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred C-------------cceEEECCCCeeeeccc-------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 0 11778899988875422 1246899999999999864 568889999999999999998
Q ss_pred cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
..|..|..+++|++|++++|.+++. +..+..+++|++|++++|++. .+|..+. .+++|++|++++|.++.. + +.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CC
T ss_pred cChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--ch
Confidence 8888999999999999999999854 556678899999999999997 7777766 689999999999998854 3 67
Q ss_pred CCCCCcEEeCCCCcCcc
Q 044353 322 RLGSLQILDVAYNSLSG 338 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~~ 338 (596)
.+++|+.|++++|++..
T Consensus 337 ~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCCSEEECCSSCEEH
T ss_pred hhccCCEEEcCCCCccc
Confidence 78899999999999874
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.7e-32 Score=270.98 Aligned_cols=306 Identities=23% Similarity=0.339 Sum_probs=197.0
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353 18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA 97 (596)
Q Consensus 18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 97 (596)
..+++|++|++++|.++.. + .+..+++|++|++++|+++ .++. +.++++|++|++++|.++.. +
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~--------- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--S--------- 104 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--G---------
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--h---------
Confidence 4555666666666665532 2 2555666666666666555 3332 55555555555555554431 2
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353 98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177 (596)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
.+..+++|++|++++|.+++ ++. +..+++|++|++++|......
T Consensus 105 ---------------~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~------------------ 148 (347)
T 4fmz_A 105 ---------------ALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL------------------ 148 (347)
T ss_dssp ---------------GGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC------------------
T ss_pred ---------------HHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc------------------
Confidence 34455555555555555542 222 233455555555555321100
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 257 (596)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 149 -------------------~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 149 -------------------SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp -------------------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred -------------------cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceee
Confidence 012235667777777776654433 6677777777777777764322 66777888888
Q ss_pred ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+.+..+ +..+++|++|++++|.++ .++. ...+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 206 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 206 AYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence 88887775543 677888888888888876 4444 33678888888888887743 45778888888888888877
Q ss_pred ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG 417 (596)
Q Consensus 338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 417 (596)
+. ..+. .+++|+.|++++|.+++..+..+..+++
T Consensus 279 ~~--~~~~--------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 279 DI--SVLN--------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp CC--GGGG--------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CC--hhhc--------------------------------------------CCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 42 1222 2556888999999998888888999999
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
|++|+|++|++++..| +..+++|++|++++|.++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999986555 888999999999999876
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-31 Score=287.85 Aligned_cols=305 Identities=20% Similarity=0.194 Sum_probs=256.0
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
+++++|.+....+..+..+++|++|++++|.+++..|.+|..+++|++|+|++|.+++ ++...|.++++|++|++++|.
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCC
Confidence 6788888887777778899999999999999998888899999999999999999984 554488999999999999999
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK 161 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (596)
+....+..|..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++ ++. ..+++|+.|++++|.+++....
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTCSEEECCSSCCSEEECC
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhhhhhhcccCccccccCC
Confidence 987777778899999999999999998888889999999999999999875 332 3468899999999988653211
Q ss_pred CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353 162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (596)
. ....+++++|.+....... .++|+.|++++|.+++ +..+..+++|+.|++++|.+++
T Consensus 211 ~-------------~L~~L~ls~n~l~~~~~~~-------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 211 I-------------AVEELDASHNSINVVRGPV-------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp T-------------TCSEEECCSSCCCEEECSC-------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred c-------------hhheeeccCCccccccccc-------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 1 1177899999886543221 3689999999999986 4678899999999999999998
Q ss_pred cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
..|..|..+++|+.|+|++|.+.++ |..+..+++|+.|++++|.+. .+|..+. .+++|++|++++|.+++. + +.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~ 342 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LS 342 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CC
T ss_pred CCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hh
Confidence 8899999999999999999999964 556678999999999999998 7888776 799999999999998854 3 67
Q ss_pred CCCCCcEEeCCCCcCccc
Q 044353 322 RLGSLQILDVAYNSLSGT 339 (596)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~ 339 (596)
.+++|+.|++++|++.+.
T Consensus 343 ~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hcCCCCEEEeeCCCCCCh
Confidence 788999999999998753
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-31 Score=265.65 Aligned_cols=250 Identities=26% Similarity=0.418 Sum_probs=219.9
Q ss_pred ceEEcccCcccc--ccccccccCCCCCCCccEEeCcC-CcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCc
Q 044353 178 SIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254 (596)
Q Consensus 178 ~~l~ls~n~l~~--~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 254 (596)
+.++++++.+.+ .++. .+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|+
T Consensus 53 ~~L~L~~~~l~~~~~~~~----~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp EEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEEECCCCCccCCcccCh----hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 334444444444 3333 334489999999995 999989999999999999999999999999999999999999
Q ss_pred EEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcc-cccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS-RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAY 333 (596)
Q Consensus 255 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 333 (596)
+|++++|.+.+..|..+..+++|++|++++|.+++.+|..+. .++ +|++|++++|.+++..|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999999999999999999999999999999989998887 576 999999999999989999999887 99999999
Q ss_pred CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc
Q 044353 334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT 413 (596)
Q Consensus 334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 413 (596)
|.+++..|..+.. +++|+.|++++|.+++.++. +.
T Consensus 207 N~l~~~~~~~~~~--------------------------------------------l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 207 NMLEGDASVLFGS--------------------------------------------DKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp SEEEECCGGGCCT--------------------------------------------TSCCSEEECCSSEECCBGGG-CC
T ss_pred CcccCcCCHHHhc--------------------------------------------CCCCCEEECCCCceeeecCc-cc
Confidence 9999877776655 44589999999999866665 88
Q ss_pred CcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353 414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 414 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
.+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..|.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8999999999999999999999999999999999999999998886 8899999999999995544
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-34 Score=304.18 Aligned_cols=383 Identities=17% Similarity=0.106 Sum_probs=186.6
Q ss_pred CCCEEECcCCcccccCCcc-CcCCCCCCEEECcCCcCccc----cChhhhhcCCCCcEEEccCCeeeeEeCCCC-CCCC-
Q 044353 22 TLRALDLSNNTVNGPIPLS-LGQIANLEYLDLSNNKLNGT----VSEIHFLNLTQLLVFRAHGNSLVFKINPNW-VPPF- 94 (596)
Q Consensus 22 ~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~- 94 (596)
+|++||+++|.+++..... +..+++|++|+|++|++++. ++. .+..+++|++|++++|.+.......+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4455555555554332221 44455555555555554421 122 34445555555555555432221111 1122
Q ss_pred ---CccEEEccCCCCCC----CcchhhcCCCCCcEEEcccCcCcccCChhHHhc----CCCCcEEEcccccccccCCCCC
Q 044353 95 ---QLAFLELRSCHLGP----RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS----IFQYDYLNVSGNQIYGGVPKFD 163 (596)
Q Consensus 95 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~ 163 (596)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|++++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----- 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----- 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence 46666666665553 335556666666666666666654434333322 23455555555554321
Q ss_pred CCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccC-----CCCCCcEEEccccc
Q 044353 164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM-----NWPRLRMLNLGNNN 238 (596)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~ 238 (596)
....++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 158 ---------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 158 ---------------------------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp ---------------------------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred ---------------------------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 1111112222245566666666555433222221 23456666666665
Q ss_pred cccc----CCccCcCCCCCcEEEccCCcccccC-----ChhhcCCCCCCEEEccCCccccc----CchhhhhhcccccEE
Q 044353 239 FTGS----LPMSIGALNSLMSLNLRNNRLSGII-----PTSFRNLSILKALDMGENELVGN----IPTWIGETFSRLMIL 305 (596)
Q Consensus 239 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L 305 (596)
++.. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+. .+++|++|
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L 289 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKEL 289 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceE
Confidence 5532 3444455566666666666555332 11222455666666666655422 233322 35566666
Q ss_pred EccCCcCcCcCCcccC-----CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353 306 NLRSNKFHGDFPIQLC-----RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT 380 (596)
Q Consensus 306 ~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (596)
++++|.+++..+..+. ..++|++|++++|.+++.....+..
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------------------- 335 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS---------------------------------- 335 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH----------------------------------
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH----------------------------------
Confidence 6666655432222211 2246666666666655321111100
Q ss_pred ccceeecccccccccEEEccCCcccccCCccccC-----cccCCeeeccCccCcc----cCCccccCCCCCCEEECCCCc
Q 044353 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTN-----LQGLQSLNLSHNLFTG----RIPDNIGVMRSIESLDFSANQ 451 (596)
Q Consensus 381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~ 451 (596)
....+++|+.|++++|.+++..+..+.. .++|++|+|++|++++ .++..+..+++|++|++++|+
T Consensus 336 ------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 336 ------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ------HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 0111344666666666665443333321 4567777777777664 556666667777777777777
Q ss_pred CcccCCcccc-----CCCCCCEEecccccCcc
Q 044353 452 LSGQIPQSMS-----NLSFLNYLNLSNNNLNG 478 (596)
Q Consensus 452 l~~~~~~~~~-----~l~~L~~L~ls~N~l~~ 478 (596)
+++.....+. ...+|+.|++.++.+..
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7643221111 23456777766666543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.1e-30 Score=258.08 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 044353 46 NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDI 125 (596)
Q Consensus 46 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 125 (596)
+++.++++++.++ .+|. .+ .++|++|++++|.+....+..|..+++|++|++++|.+.+..+..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777776 5654 22 246677777777666665566666666666666666666555666666666666666
Q ss_pred ccCcCc
Q 044353 126 SSTRIS 131 (596)
Q Consensus 126 ~~n~i~ 131 (596)
++|.++
T Consensus 110 ~~n~l~ 115 (332)
T 2ft3_A 110 SKNHLV 115 (332)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 666665
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.8e-30 Score=254.27 Aligned_cols=198 Identities=19% Similarity=0.269 Sum_probs=97.9
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccc--cCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEE
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSG--IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL 305 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 305 (596)
+|++|++++|.+++..+..|.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.+. .+|.... ++|++|
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTEL 197 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEE
Confidence 44444444444443333344444444444444444432 33444445555555555555554 3443322 455555
Q ss_pred EccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecccee
Q 044353 306 NLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLV 385 (596)
Q Consensus 306 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (596)
++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------- 238 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------------------------------------- 238 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---------------------------------------
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---------------------------------------
Confidence 55555555444455555555555555555555433333322
Q ss_pred ecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC------CCCCCEEECCCCcCcc--cCC
Q 044353 386 EYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV------MRSIESLDFSANQLSG--QIP 457 (596)
Q Consensus 386 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~ 457 (596)
+++|+.|++++|.++ .+|..+..+++|++|+|++|++++..+..|.. .+.|+.|++++|.+.. +.|
T Consensus 239 -----l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 239 -----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp -----STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred -----CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 223555555555555 45555555666666666666665444444432 2455566666665543 344
Q ss_pred ccccCCCCCCEEecccc
Q 044353 458 QSMSNLSFLNYLNLSNN 474 (596)
Q Consensus 458 ~~~~~l~~L~~L~ls~N 474 (596)
..|..++.++.+++++|
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 55555666666666655
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.1e-34 Score=301.02 Aligned_cols=388 Identities=20% Similarity=0.156 Sum_probs=289.0
Q ss_pred CeeecCCCccccCC-ccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCccccChhhhhcCC----C
Q 044353 1 SLFLRRSQFYGHLT-NQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT----Q 71 (596)
Q Consensus 1 ~l~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~----~ 71 (596)
+|||++|+++.... ..+..+++|++|++++|.+++. ++..+..+++|++|+|++|.+.+......+..++ +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 47999999986543 3478999999999999999853 4677888999999999999997544433445566 7
Q ss_pred CcEEEccCCeeee----EeCCCCCCCCCccEEEccCCCCCCCcchhhc-----CCCCCcEEEcccCcCcccCChhH---H
Q 044353 72 LLVFRAHGNSLVF----KINPNWVPPFQLAFLELRSCHLGPRFPLWLQ-----SQKKLYYLDISSTRISAKIPRGF---W 139 (596)
Q Consensus 72 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~i~~~~~~~~---~ 139 (596)
|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.....+ +
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 9999999999874 4467788999999999999998755444333 35689999999999986543332 3
Q ss_pred hcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCC-CCCCccEEeCcCCcCCCC
Q 044353 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN-FSKNIEFLKLSKNHFSED 218 (596)
Q Consensus 140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~ 218 (596)
..+++|++|++++|.+++.... .+...+. ..++|++|++++|.+++.
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~--------------------------------~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVR--------------------------------VLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHH--------------------------------HHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred hhCCCCCEEECcCCCcchHHHH--------------------------------HHHHHHhcCCCCceEEEccCCCCcHH
Confidence 4468999999999987532111 1111111 145899999999998764
Q ss_pred ----CCcccCCCCCCcEEEcccccccccC-----CccCcCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEccCC
Q 044353 219 ----IPDCWMNWPRLRMLNLGNNNFTGSL-----PMSIGALNSLMSLNLRNNRLSGI----IPTSFRNLSILKALDMGEN 285 (596)
Q Consensus 219 ----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n 285 (596)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 3556778899999999999887432 23334688999999999999864 4667778999999999999
Q ss_pred cccccCchhhhhh----cccccEEEccCCcCcCc----CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353 286 ELVGNIPTWIGET----FSRLMILNLRSNKFHGD----FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357 (596)
Q Consensus 286 ~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 357 (596)
.+.+..+..+... .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------- 365 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL--------- 365 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---------
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH---------
Confidence 9875444444422 36999999999998854 455677789999999999998865444332210
Q ss_pred CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc----cCCccccCcccCCeeeccCccCcccCC
Q 044353 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGRIP 433 (596)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 433 (596)
....++|+.|++++|.+++ .++..+..+++|++|+|++|++++...
T Consensus 366 ------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 366 ------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp ------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred ------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 0014569999999999986 678888899999999999999875432
Q ss_pred cccc-----CCCCCCEEECCCCcCcccCCcc
Q 044353 434 DNIG-----VMRSIESLDFSANQLSGQIPQS 459 (596)
Q Consensus 434 ~~~~-----~l~~L~~L~Ls~N~l~~~~~~~ 459 (596)
..+. ...+|+.|++.++......++.
T Consensus 416 ~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred HHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 2221 2457999999988887544443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-29 Score=252.00 Aligned_cols=291 Identities=21% Similarity=0.274 Sum_probs=220.4
Q ss_pred CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEE
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE 100 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 100 (596)
.+++.++++++.++ .+|..+. ++|++|++++|+++ .++...|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 37889999998888 4565543 68899999999988 55555788999999999999999888788899999999999
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceE
Q 044353 101 LRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180 (596)
Q Consensus 101 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l 180 (596)
+++|+++. +|..+. ++|+.|++++|.+++ ++...+..+++|++|++++|.+.....
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------- 162 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGI-------------------- 162 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGB--------------------
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCc--------------------
Confidence 99998873 444433 789999999999874 555555668899999999988742100
Q ss_pred EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC
Q 044353 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260 (596)
Q Consensus 181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 260 (596)
....+..+++|+.|++++|.++. +|..+. ++|++|++++|.+++..+..|..+++|++|++++
T Consensus 163 --------------~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 163 --------------ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp --------------CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred --------------ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 01122336788888888888875 343332 6888888888888877778888888888888888
Q ss_pred CcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC------CCCCcEEeCCCC
Q 044353 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR------LGSLQILDVAYN 334 (596)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n 334 (596)
|.+.+..+..+..+++|++|++++|++. .+|.++. .+++|++|++++|.+++..+..|.. .+.++.+++++|
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 8888777778888888888888888887 7777765 6888888888888888665555543 367888888888
Q ss_pred cCcc--cCCccccccccCcccCCCCC
Q 044353 335 SLSG--TIPRCINNFSAMATTDSSDP 358 (596)
Q Consensus 335 ~l~~--~~~~~~~~l~~L~~l~l~~~ 358 (596)
++.. ..|..+..+..++.++++++
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccCccccccccceeEEEeccc
Confidence 8753 45677777888887777653
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.7e-30 Score=254.80 Aligned_cols=287 Identities=20% Similarity=0.279 Sum_probs=210.8
Q ss_pred CCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353 22 TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL 101 (596)
Q Consensus 22 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 101 (596)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999999998 5566553 78999999999998 555458999999999999999999888889999999999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccc--cCCCCCCCCCCccccCCCCCce
Q 044353 102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYG--GVPKFDSPSVPLITTPSLLGSI 179 (596)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~~~~~~~ 179 (596)
++|.+.. +|..+. ++|++|++++|.+++ ++...+..+++|++|++++|.++. ..+..
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------- 168 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA----------------- 168 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-----------------
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc-----------------
Confidence 9999984 444443 899999999999984 565555678999999999998853 21211
Q ss_pred EEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEcc
Q 044353 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259 (596)
Q Consensus 180 l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 259 (596)
+..+ +|+.|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 169 -------------------~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 169 -------------------FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp -------------------SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred -------------------ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 1113 66677777777765 333332 567777777777776666677777777777777
Q ss_pred CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC------CCCCcEEeCCC
Q 044353 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR------LGSLQILDVAY 333 (596)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~ 333 (596)
+|.+.+..+..+..+++|+.|++++|++. .+|..+. .+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 77777666667777777777777777776 6666655 5777777777777777555555543 35677777777
Q ss_pred CcCc--ccCCccccccccCcccCCCCC
Q 044353 334 NSLS--GTIPRCINNFSAMATTDSSDP 358 (596)
Q Consensus 334 n~l~--~~~~~~~~~l~~L~~l~l~~~ 358 (596)
|++. +..|..+..++.++.++++++
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CcccccccCcccccccchhhhhhcccc
Confidence 7776 455667777777777766543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.9e-29 Score=244.97 Aligned_cols=237 Identities=23% Similarity=0.270 Sum_probs=203.0
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc--CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS--LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 279 (596)
.+++++|++++|.+++..+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+.. .+..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence 36899999999999876666789999999999999998732 35667788999999999999984 5566889999999
Q ss_pred EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc-cCCccccccccCcccCCCCC
Q 044353 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG-TIPRCINNFSAMATTDSSDP 358 (596)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~ 358 (596)
|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------ 173 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------ 173 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh------------
Confidence 99999999843332444478999999999999988888889999999999999999875 45555544
Q ss_pred CCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC
Q 044353 359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 438 (596)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 438 (596)
+++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+..
T Consensus 174 --------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 174 --------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp --------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred --------------------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 455899999999999888999999999999999999999877778999
Q ss_pred CCCCCEEECCCCcCcccCCccccCCC-CCCEEecccccCccCCCCC
Q 044353 439 MRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 439 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~~~~~ 483 (596)
+++|+.|++++|++++..|..+..++ +|+.|++++|+++|.++..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 99999999999999999999999985 9999999999999987643
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7e-28 Score=251.50 Aligned_cols=235 Identities=23% Similarity=0.270 Sum_probs=209.5
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
.++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++.+.+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 36899999999999998899999999999999999999988889999999999999999999988888899999999999
Q ss_pred ccCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353 282 MGENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 360 (596)
+++|.+. .++...+..+++|++|++++| .+....+..+..+++|++|++++|.+++ +|. +.
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~--------------- 215 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LT--------------- 215 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CT---------------
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cc---------------
Confidence 9999998 677766668999999999985 5554445578899999999999999883 331 21
Q ss_pred CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440 (596)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 440 (596)
.+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..++
T Consensus 216 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 216 -----------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp -----------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -----------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 256699999999999988899999999999999999999989999999999
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 441 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
+|+.|+|++|+++...+..|..+++|+.|++++|++.|.|...
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999999999888888999999999999999999998754
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.7e-28 Score=250.27 Aligned_cols=234 Identities=23% Similarity=0.255 Sum_probs=207.4
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++.+.+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 58999999999999888889999999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 361 (596)
++|.+. .++...+..+++|++|++++| .+....+..|..+++|++|++++|.++ .+|. +.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------- 204 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------- 204 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------
Confidence 999997 666666668999999999985 455444557889999999999999987 3442 11
Q ss_pred ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441 (596)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 441 (596)
.+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++
T Consensus 205 ----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 205 ----------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp ----------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred ----------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 2566999999999999888999999999999999999999999999999999
Q ss_pred CCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
|+.|+|++|+++...+..|..+++|+.|++++|++.|.|...
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 999999999999888888999999999999999999998754
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.1e-28 Score=236.51 Aligned_cols=250 Identities=20% Similarity=0.205 Sum_probs=191.4
Q ss_pred cEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCC
Q 044353 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285 (596)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (596)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777777764 34332 357788888888887666677778888888888888888777777888888888888888
Q ss_pred c-ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353 286 E-LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364 (596)
Q Consensus 286 ~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 364 (596)
. +. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 151 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------ 151 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence 6 55 553333336788888888888888766777888888888888888887544444443
Q ss_pred cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 444 (596)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 444 (596)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.
T Consensus 152 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 444788888888888666677889999999999999999888999999999999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353 445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
|++++|.+++..+..+..+++|+.|++++|++.|.++..+.+..++......+. .|..|
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 999999999877778999999999999999999988765555555555555555 45444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=247.77 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=164.2
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKAL 280 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 280 (596)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..|..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 5677777777777776666667777777777777777775444446677777777777777775444 466677777777
Q ss_pred EccCCc-ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCC
Q 044353 281 DMGENE-LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359 (596)
Q Consensus 281 ~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~ 359 (596)
++++|. +. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+.
T Consensus 155 ~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-------------- 218 (353)
T 2z80_A 155 RVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV-------------- 218 (353)
T ss_dssp EEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH--------------
T ss_pred ECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh--------------
Confidence 777773 43 444333336777777777777777666777777777777777777765 2222211
Q ss_pred CCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccc---cCcccCCeeeccCccCcc----cC
Q 044353 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV---TNLQGLQSLNLSHNLFTG----RI 432 (596)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~ 432 (596)
..+++|+.|++++|.+++..+..+ .....++.++|+++.+++ .+
T Consensus 219 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 219 -----------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp -----------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred -----------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 124557888888888876544433 235667777888777765 46
Q ss_pred CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
|+.+..+++|++|++++|+++.+.+..|..+++|++|++++|++.|.+|..
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 778889999999999999999554455789999999999999999988743
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=240.82 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=178.6
Q ss_pred CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353 43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY 122 (596)
Q Consensus 43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 122 (596)
.|+.....+.+++.++ .+|. .+. ++|++|++++|.++...+..+..+++|++|++++|.+++..+..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3444555666666665 5554 222 35666666666666555556666666666666666666555666666777777
Q ss_pred EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353 123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202 (596)
Q Consensus 123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~ 202 (596)
|++++|.++ .++...+..+++|++|++++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~-------------------------------------------------- 133 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLG-------------------------------------------------- 133 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTT--------------------------------------------------
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCC--------------------------------------------------
Confidence 777777666 34444333344444444444
Q ss_pred CCccEEeCcCCcCCCCCC-cccCCCCCCcEEEcccc-cccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353 203 KNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNN-NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 280 (596)
|.+.+..+ ..+..+++|++|++++| .+....+..|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 134 ----------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 134 ----------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp ----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred ----------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 44433222 34566667777777766 3555556667777777777777777777777777777888888
Q ss_pred EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360 (596)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 360 (596)
++++|.+. .+|...+..+++|++|++++|.+++..+..+....
T Consensus 204 ~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~------------------------------------ 246 (353)
T 2z80_A 204 ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE------------------------------------ 246 (353)
T ss_dssp EEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------------------
T ss_pred cCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc------------------------------------
Confidence 88888775 66666665677888888888877754332221100
Q ss_pred CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc----cCCccccCcccCCeeeccCccCcccCCccc
Q 044353 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 436 (596)
....++.++++++.+++ .+|..+..+++|++|+|++|+++...+..|
T Consensus 247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 01113334444443332 467788899999999999999994444446
Q ss_pred cCCCCCCEEECCCCcCcccCC
Q 044353 437 GVMRSIESLDFSANQLSGQIP 457 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N~l~~~~~ 457 (596)
..+++|++|++++|.+.+..|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 899999999999999986544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.6e-27 Score=235.66 Aligned_cols=227 Identities=18% Similarity=0.256 Sum_probs=202.2
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 468999999999998 56777888999999999999999 88999999999999999999999 6688899999999999
Q ss_pred ccCCcccccCchhhh--------hhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCccc
Q 044353 282 MGENELVGNIPTWIG--------ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATT 353 (596)
Q Consensus 282 L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 353 (596)
+++|.+.+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-------
Confidence 999888888888764 24889999999999998 78888999999999999999998 45555554
Q ss_pred CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCC
Q 044353 354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 433 (596)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 433 (596)
+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+.+|
T Consensus 228 -------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 228 -------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 4458899999999998999999999999999999999988999
Q ss_pred ccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353 434 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 434 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 477 (596)
..++.+++|++|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999987664
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.6e-30 Score=276.42 Aligned_cols=414 Identities=12% Similarity=0.036 Sum_probs=221.8
Q ss_pred CCccccCCCCCCEEECcCCccc---ccCCccCc------------CCCCCCEEECcCCcCccccChhhhhc-CC-CCcEE
Q 044353 13 LTNQLGRFKTLRALDLSNNTVN---GPIPLSLG------------QIANLEYLDLSNNKLNGTVSEIHFLN-LT-QLLVF 75 (596)
Q Consensus 13 ~~~~l~~l~~L~~L~ls~n~i~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~~-l~-~L~~L 75 (596)
.+..+.++++|++|+++++..- +.+|..++ .+++|++|+|++|.+++.... .+.. ++ +|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEE
Confidence 3445678889999999875321 22333333 688999999999988754443 4444 34 49999
Q ss_pred EccCCee-eeE-eCCCCCCCCCccEEEccCCCCCCC----cchhhcCCCCCcEEEcccCcCcccCC---hhHHhcCCCCc
Q 044353 76 RAHGNSL-VFK-INPNWVPPFQLAFLELRSCHLGPR----FPLWLQSQKKLYYLDISSTRISAKIP---RGFWNSIFQYD 146 (596)
Q Consensus 76 ~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~~l~~L~ 146 (596)
++++|.. ... .......+++|++|++++|.+.+. ++.....+++|+.|++++|.+++... ..+...+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9998862 111 111223678999999999987655 34456678999999999998863222 22344578899
Q ss_pred EEEcccccccccCCCCCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCC
Q 044353 147 YLNVSGNQIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225 (596)
Q Consensus 147 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 225 (596)
.|++++|.+.+. +..+.. .+. +.++++...... ........+..+++|+.|+++++.. +..|..+..
T Consensus 224 ~L~L~~~~~~~l-~~~~~~---------~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~ 291 (592)
T 3ogk_B 224 SVKVGDFEILEL-VGFFKA---------AANLEEFCGGSLNEDI-GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPF 291 (592)
T ss_dssp EEECSSCBGGGG-HHHHHH---------CTTCCEEEECBCCCCT-TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGG
T ss_pred EEeccCccHHHH-HHHHhh---------hhHHHhhccccccccc-chHHHHHHhhccccccccCccccch-hHHHHHHhh
Confidence 999988876431 110000 000 223332211000 0011112223344444444444322 123333444
Q ss_pred CCCCcEEEcccccccccCC-ccCcCCCCCcEEEccCCccc-ccCChhhcCCCCCCEEEccC-----------CcccccCc
Q 044353 226 WPRLRMLNLGNNNFTGSLP-MSIGALNSLMSLNLRNNRLS-GIIPTSFRNLSILKALDMGE-----------NELVGNIP 292 (596)
Q Consensus 226 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~ 292 (596)
+++|++|++++|.+++... ..+..+++|++|+++ +.+. ...+..+..+++|++|++++ +.+++...
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 4445555555444332111 123344445555444 2222 11222223444455555541 23322212
Q ss_pred hhhhhhcccccEEEccCCcCcCcCCcccCC-CCCCcEEeCC----CCcCcccCCccccccccCcccCCCCCCCCccccCC
Q 044353 293 TWIGETFSRLMILNLRSNKFHGDFPIQLCR-LGSLQILDVA----YNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASS 367 (596)
Q Consensus 293 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 367 (596)
..+...+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. |..
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~------------------------ 425 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD------------------------ 425 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH------------------------
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH------------------------
Confidence 222223444555554444444333323322 4444444443 2233211 000
Q ss_pred CCCceeeeeEEEeccceeecccccccccEEEccCCc--ccccCCcccc-CcccCCeeeccCccCcc-cCCccccCCCCCC
Q 044353 368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN--FSGEIPVEVT-NLQGLQSLNLSHNLFTG-RIPDNIGVMRSIE 443 (596)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 443 (596)
.........+++|+.|++++|. +++..+..+. .+++|++|+|++|++++ .++..+..+++|+
T Consensus 426 --------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 426 --------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp --------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred --------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 0011123346778999997543 5554444443 47889999999998875 3344557789999
Q ss_pred EEECCCCcCccc-CCccccCCCCCCEEecccccCccC
Q 044353 444 SLDFSANQLSGQ-IPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 444 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
+|++++|.+++. ++.....+++|+.|++++|+++..
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999998754 334456788999999999997654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.9e-27 Score=230.18 Aligned_cols=248 Identities=19% Similarity=0.216 Sum_probs=211.7
Q ss_pred cEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccccc--CChhhcCCCCCCEEEcc
Q 044353 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI--IPTSFRNLSILKALDMG 283 (596)
Q Consensus 206 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~ 283 (596)
+.++.+++.++. +|..+ .++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 468888888865 44433 36899999999999966556689999999999999999844 36778889999999999
Q ss_pred CCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
+|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------- 148 (306)
T 2z66_A 87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------- 148 (306)
T ss_dssp SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT----------------
T ss_pred CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc----------------
Confidence 99997 6777655 79999999999999986554 57889999999999999998776666554
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc-cCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 441 (596)
+++|++|++++|.+++ ..|..+..+++|++|+|++|++++..|..+..+++
T Consensus 149 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 149 ----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp ----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ----------------------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 4458999999999986 58889999999999999999999888999999999
Q ss_pred CCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-Ccc-CccccccccCCC-CCCC
Q 044353 442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFGASSFAGND-LCGA 502 (596)
Q Consensus 442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~-~~l~~~~~~~n~-lc~~ 502 (596)
|++|++++|.+++..+..+..+++|+.|++++|++++..+.. ..+ ..++.+++++|+ .|.+
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 999999999999888888999999999999999999887754 445 478999999999 5654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=239.21 Aligned_cols=246 Identities=20% Similarity=0.218 Sum_probs=119.8
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS 103 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 103 (596)
+.++.++..++ .+|..+. ++++.|+|++|++. .++...|.++++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555555554 2333332 44555555555554 33333555555555555555555554445555555555555555
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcc
Q 044353 104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS 183 (596)
Q Consensus 104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls 183 (596)
|+++...+..+..+++|++|++++|.++. ++...+..+++|++|++++|+..+..+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------------- 178 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISE---------------------- 178 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECT----------------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCc----------------------
Confidence 55554444455555555555555555542 3333333455555555555322111110
Q ss_pred cCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc
Q 044353 184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263 (596)
Q Consensus 184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 263 (596)
..+..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+
T Consensus 179 -------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 179 -------------GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp -------------TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred -------------chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 011123455555555555543 22 244455555555555555544455555555555555555555
Q ss_pred cccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcC
Q 044353 264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF 312 (596)
Q Consensus 264 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 312 (596)
.++.+..|..+++|+.|+|++|+++ .++...+..+++|+.|++++|.+
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 5555555555555555555555554 34433333455555555555544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2e-26 Score=240.50 Aligned_cols=248 Identities=21% Similarity=0.225 Sum_probs=162.1
Q ss_pred CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEcc
Q 044353 23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELR 102 (596)
Q Consensus 23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 102 (596)
...++.++..++ .+|..+. +++++|+|++|+++ .++...|.++++|++|++++|.+....+..|..+++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456677776666 3454443 56777777777776 3433467777777777777777777766777777777777777
Q ss_pred CCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEc
Q 044353 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL 182 (596)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~l 182 (596)
+|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|...+..+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------------- 189 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE--------------------- 189 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECT---------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccCh---------------------
Confidence 77777666666777777777777777776 34444445567777777776432211111
Q ss_pred ccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353 183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262 (596)
Q Consensus 183 s~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 262 (596)
..+..+++|+.|++++|.+.+. | .+..+++|++|++++|.+++..|..|.++++|+.|++++|.
T Consensus 190 --------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 190 --------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp --------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred --------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 1122356677777777766643 2 35666677777777777776666667777777777777777
Q ss_pred ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCc
Q 044353 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFH 313 (596)
Q Consensus 263 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 313 (596)
+.++.+..|..+++|+.|++++|+++ .+|...+..+++|+.|++++|.+.
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence 77666666777777777777777776 555554445667777777777654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.8e-26 Score=224.11 Aligned_cols=255 Identities=19% Similarity=0.188 Sum_probs=186.7
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS 103 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 103 (596)
++++.+++.++. +|..+ .++|++|++++|.++ .++...|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 677888888774 45433 467888888888887 55544788888888888888888877777888888888888888
Q ss_pred CC-CCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEc
Q 044353 104 CH-LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL 182 (596)
Q Consensus 104 n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~l 182 (596)
|. +....+..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-------------------- 148 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDT-------------------- 148 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT--------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCHhH--------------------
Confidence 86 77666777888888888888888887544443 345678888888888765322221
Q ss_pred ccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353 183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262 (596)
Q Consensus 183 s~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 262 (596)
++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.
T Consensus 149 ----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 149 ----------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 2236788888888888887776778888889999999888888778888888889999999998
Q ss_pred ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 263 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
+.+..+..+..+++|+.|++++|++....+.... ...++.+....+.+....|..+.
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESGGGT
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCchHhC
Confidence 8877777788888899999998888644333211 22334444555555555555544
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=7.3e-29 Score=268.67 Aligned_cols=410 Identities=12% Similarity=0.028 Sum_probs=253.2
Q ss_pred cCCccCcCCCCCCEEECcCCcCc---cccC-----------hhhhhcCCCCcEEEccCCeeeeEeCCCCCC-CC-CccEE
Q 044353 36 PIPLSLGQIANLEYLDLSNNKLN---GTVS-----------EIHFLNLTQLLVFRAHGNSLVFKINPNWVP-PF-QLAFL 99 (596)
Q Consensus 36 ~~~~~~~~l~~L~~L~Ls~n~i~---~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L 99 (596)
..+..+..+++|++|+|+++... +.+| ...+..+++|++|+|++|.+.......+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 33445667899999999886421 1111 112337999999999999876554444444 34 49999
Q ss_pred EccCCC-CCC-CcchhhcCCCCCcEEEcccCcCcccCCh---hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353 100 ELRSCH-LGP-RFPLWLQSQKKLYYLDISSTRISAKIPR---GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174 (596)
Q Consensus 100 ~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 174 (596)
++++|. +.. ..+.....+++|++|++++|.+++.... .+...+++|++|++++|.+++.....+... ...
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-----~~~ 218 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-----ARN 218 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-----HHH
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-----Hhh
Confidence 999987 221 1223345789999999999998765432 345668999999999998752111000000 001
Q ss_pred CCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC---CCCCcccCCCCCCcEEEcccccccccCCccCcCC
Q 044353 175 LLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS---EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL 250 (596)
Q Consensus 175 ~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 250 (596)
.+. +.+++++|.+.+ .+ ..+..+++|++|+++..... ...+..+..+++|+.++++++... .+|..+..+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~ 292 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFA 292 (592)
T ss_dssp CTTCCEEECSSCBGGG-GH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGG
T ss_pred CCCCcEEeccCccHHH-HH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhc
Confidence 112 566666666554 11 22233566777776643221 122334555667777777664332 455556666
Q ss_pred CCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccC-----------CcCcCc-CC
Q 044353 251 NSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS-----------NKFHGD-FP 317 (596)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~ 317 (596)
++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++ +.++.. ++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 677777777776553322 334667777777776 3333233333334566777777773 334322 11
Q ss_pred cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEE
Q 044353 318 IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI 397 (596)
Q Consensus 318 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 397 (596)
.....+++|++|+++.|.+++..+..+.. .+++|+.|
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-------------------------------------------~~~~L~~L 408 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGT-------------------------------------------YLKNLCDF 408 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHH-------------------------------------------HCCSCCEE
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHh-------------------------------------------hCCCCcEE
Confidence 22334667777777666665433333221 25568888
Q ss_pred Ecc----CCccccc-----CCccccCcccCCeeeccCcc--CcccCCcccc-CCCCCCEEECCCCcCccc-CCccccCCC
Q 044353 398 DIS----KNNFSGE-----IPVEVTNLQGLQSLNLSHNL--FTGRIPDNIG-VMRSIESLDFSANQLSGQ-IPQSMSNLS 464 (596)
Q Consensus 398 ~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 464 (596)
+++ .|.+++. ++..+.++++|+.|+|++|. +++..+..++ .+++|++|++++|++++. .+..+..++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 886 6677642 33446779999999998543 6655555554 489999999999999863 455668899
Q ss_pred CCCEEecccccCccC-CCCC-CccCccccccccCCCCC
Q 044353 465 FLNYLNLSNNNLNGE-IPSS-TQLQSFGASSFAGNDLC 500 (596)
Q Consensus 465 ~L~~L~ls~N~l~~~-~~~~-~~~~~l~~~~~~~n~lc 500 (596)
+|+.|++++|+++.. ++.. ..++.++.+++++|++.
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 999999999998643 2221 35778889999998743
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=236.28 Aligned_cols=240 Identities=17% Similarity=0.164 Sum_probs=186.0
Q ss_pred CCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 201 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 280 (596)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 36789999999999998877889999999999999999986554 889999999999999998544 34899999
Q ss_pred EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360 (596)
Q Consensus 281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 360 (596)
++++|.+.+ ++.. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 105 ~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------- 165 (317)
T 3o53_A 105 HAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------- 165 (317)
T ss_dssp ECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG---------------
T ss_pred ECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh---------------
Confidence 999999974 4332 367899999999999987777888899999999999999865555442
Q ss_pred CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440 (596)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 440 (596)
..+++|+.|++++|.+++. + ....+++|++|+|++|++++ +|..+..++
T Consensus 166 ----------------------------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 214 (317)
T 3o53_A 166 ----------------------------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA 214 (317)
T ss_dssp ----------------------------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred ----------------------------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccC
Confidence 1245588888888888754 2 23347888888888888884 444588888
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC--CccCccccccccCCC
Q 044353 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFGASSFAGND 498 (596)
Q Consensus 441 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~--~~~~~l~~~~~~~n~ 498 (596)
+|+.|++++|+++ .+|..+..+++|+.|++++|++.|..... ..++.++.+.+.+++
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 8888888888888 45667888888888888888888432211 334445555555443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.2e-26 Score=225.75 Aligned_cols=205 Identities=18% Similarity=0.278 Sum_probs=184.6
Q ss_pred CCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcC-------
Q 044353 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRN------- 273 (596)
Q Consensus 201 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------- 273 (596)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 3689999999999998 68888999999999999999998 78889999999999999998888788876654
Q ss_pred --CCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCc
Q 044353 274 --LSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA 351 (596)
Q Consensus 274 --l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 351 (596)
+++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..+
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l---- 252 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---- 252 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC----
T ss_pred ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC----
Confidence 999999999999998 8988876 7999999999999999 467789999999999999999998888777654
Q ss_pred ccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc
Q 044353 352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 431 (596)
Q Consensus 352 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 431 (596)
++|+.|+|++|.+.+.+|..+..+++|++|+|++|++.+.
T Consensus 253 ----------------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 253 ----------------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ----------------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred ----------------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 4488999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCEEECCCCcCcc
Q 044353 432 IPDNIGVMRSIESLDFSANQLSG 454 (596)
Q Consensus 432 ~~~~~~~l~~L~~L~Ls~N~l~~ 454 (596)
+|+.++.+++|+.+++..+.+..
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSCC
T ss_pred ccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999887663
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=241.93 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=188.4
Q ss_pred CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279 (596)
Q Consensus 200 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 279 (596)
..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|+|++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 345689999999999999888899999999999999999986655 8899999999999999986543 389999
Q ss_pred EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCC
Q 044353 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359 (596)
Q Consensus 280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~ 359 (596)
|++++|.+.+ ++.. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 104 L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------------- 166 (487)
T 3oja_A 104 LHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------------- 166 (487)
T ss_dssp EECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------
T ss_pred EECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------
Confidence 9999999984 4332 4689999999999999888888999999999999999999777666541
Q ss_pred CCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCC
Q 044353 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 439 (596)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 439 (596)
.+++|+.|+|++|.+++..+ ...+++|+.|+|++|++++.. ..+..+
T Consensus 167 ------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l 213 (487)
T 3oja_A 167 ------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSA 213 (487)
T ss_dssp ------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGG
T ss_pred ------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCC
Confidence 14558899999999986533 345899999999999999644 458899
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353 440 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 440 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
++|+.|++++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 999999999999995 577788999999999999999854
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=229.96 Aligned_cols=263 Identities=18% Similarity=0.182 Sum_probs=190.8
Q ss_pred eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353 3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82 (596)
Q Consensus 3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 82 (596)
+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|+|++|++++.. .|.++++|++|++++|.+
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYV 92 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCcc
Confidence 45556665555556667788999999999998877788888999999999999887433 278888999999999888
Q ss_pred eeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCC
Q 044353 83 VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKF 162 (596)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (596)
+... ..++|++|++++|++.+..+.. +++|+.|++++|++++..+..+ ..+++|++|++++|++++..+..
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHH
Confidence 7654 2378888888888887655433 5778888888888875444333 44678888888888764322111
Q ss_pred CCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc
Q 044353 163 DSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS 242 (596)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (596)
+. ..+++|++|++++|.+++..+ ...+++|++|++++|.+++
T Consensus 164 --------------------------------~~---~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 164 --------------------------------LA---ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp --------------------------------GG---GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-
T ss_pred --------------------------------Hh---hccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-
Confidence 11 125788888888888876532 3357888888888888884
Q ss_pred CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCccc-ccCchhhhhhcccccEEEccCC-cCcCcCC
Q 044353 243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV-GNIPTWIGETFSRLMILNLRSN-KFHGDFP 317 (596)
Q Consensus 243 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 317 (596)
+|..+..+++|+.|++++|.+++ .|..+..+++|+.|++++|++. +.++.++. .+++|+.+++.++ .+.+..+
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHSSSS
T ss_pred chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh-ccccceEEECCCchhccCCch
Confidence 44457888888888888888884 5667888888888888888887 55555555 6788888888744 4444333
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=9.1e-25 Score=212.29 Aligned_cols=212 Identities=21% Similarity=0.210 Sum_probs=142.3
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 307 (596)
+|++|++++|.+++..+..|.++++|++|++++|.+.++.+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence 4566666666665554545556666666666666666555555666666666666666665 233222225666666666
Q ss_pred cCCcCcCcCCcccCCCCCCcEEeCCCCcCccc-CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceee
Q 044353 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT-IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVE 386 (596)
Q Consensus 308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (596)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~---------------------------------------- 147 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN---------------------------------------- 147 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------------------
Confidence 66666655444566667777777777766642 3444443
Q ss_pred cccccccccEEEccCCcccccCCccccCcccCC----eeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 387 YNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 387 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
+++|+.|++++|.+++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..+..
T Consensus 148 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 148 ----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ----CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred ----CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 33366677777777766666666666666 789999999866555554 458999999999999777778899
Q ss_pred CCCCCEEecccccCccCCCCCCc
Q 044353 463 LSFLNYLNLSNNNLNGEIPSSTQ 485 (596)
Q Consensus 463 l~~L~~L~ls~N~l~~~~~~~~~ 485 (596)
+++|+.|++++|++.|.|+....
T Consensus 223 l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTTTHH
T ss_pred cccccEEEccCCcccccCCchHH
Confidence 99999999999999999986533
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-24 Score=231.26 Aligned_cols=269 Identities=25% Similarity=0.250 Sum_probs=190.2
Q ss_pred CCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353 22 TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL 101 (596)
Q Consensus 22 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 101 (596)
+++.|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|++++|.++.. +. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 4666777777766 4454443 56777777777666 5553 456677777777766532 22 4566777777
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353 102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD 181 (596)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (596)
++|.+++... .+++|+.|++++|+++. +|.. +++|++|++++|++++. +..... -+.++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~----l~~L~~L~Ls~N~l~~l-~~~~~~-----------L~~L~ 167 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLASL-PALPSE-----------LCKLW 167 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSCC-CCCCTT-----------CCEEE
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC----CCCCCEEECcCCcCCCc-CCccCC-----------CCEEE
Confidence 7776654322 45667777777776653 4432 35677777777766532 111100 05566
Q ss_pred cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261 (596)
Q Consensus 182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 261 (596)
+++|.+++. + ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|+.|++++|
T Consensus 168 L~~N~l~~l-~-------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N 231 (622)
T 3g06_A 168 AYNNQLTSL-P-------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN 231 (622)
T ss_dssp CCSSCCSCC-C-------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSS
T ss_pred CCCCCCCCC-c-------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCC
Confidence 677666542 1 236789999999999986 333 2478999999999998 45543 478999999999
Q ss_pred cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCC
Q 044353 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP 341 (596)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 341 (596)
.++++ | ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus 232 ~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 232 RLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 99964 3 46789999999999998 7776 4689999999999999 678889999999999999999998888
Q ss_pred cccccccc
Q 044353 342 RCINNFSA 349 (596)
Q Consensus 342 ~~~~~l~~ 349 (596)
..+..++.
T Consensus 302 ~~l~~L~~ 309 (622)
T 3g06_A 302 QALREITS 309 (622)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 88877664
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3e-24 Score=229.64 Aligned_cols=269 Identities=23% Similarity=0.263 Sum_probs=207.0
Q ss_pred CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEE
Q 044353 45 ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLD 124 (596)
Q Consensus 45 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 124 (596)
.++++|++++|.++ .+|. .+. ++|++|++++|.++.. +. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 46999999999998 8886 333 7999999999998843 33 57899999999999985 443 679999999
Q ss_pred cccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCC
Q 044353 125 ISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKN 204 (596)
Q Consensus 125 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~ 204 (596)
+++|.+++ +|. .+++|+.|++++|+++.. +. .+++
T Consensus 108 Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~l-p~---------------------------------------~l~~ 142 (622)
T 3g06_A 108 IFSNPLTH-LPA----LPSGLCKLWIFGNQLTSL-PV---------------------------------------LPPG 142 (622)
T ss_dssp ECSCCCCC-CCC----CCTTCCEEECCSSCCSCC-CC---------------------------------------CCTT
T ss_pred CcCCcCCC-CCC----CCCCcCEEECCCCCCCcC-CC---------------------------------------CCCC
Confidence 99999985 554 368899999999987531 11 0367
Q ss_pred ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353 205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284 (596)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (596)
|++|++++|.+++. |. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++++.+ .+++|+.|++++
T Consensus 143 L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~ 210 (622)
T 3g06_A 143 LQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYN 210 (622)
T ss_dssp CCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcC
Confidence 88888888888753 32 34678888888888884 45 346788888888888885332 347888888888
Q ss_pred CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364 (596)
Q Consensus 285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 364 (596)
|.++ .+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .
T Consensus 211 N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~------------------ 259 (622)
T 3g06_A 211 NRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---L------------------ 259 (622)
T ss_dssp SCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---C------------------
T ss_pred Cccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---c------------------
Confidence 8887 6664 24788899999988884 55 45678899999999887 3443 1
Q ss_pred cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440 (596)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 440 (596)
+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 260 --------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 260 --------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 445888899999888 6788888999999999999998887777665543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.3e-24 Score=208.58 Aligned_cols=207 Identities=20% Similarity=0.230 Sum_probs=131.9
Q ss_pred ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353 205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284 (596)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (596)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555543 332221 3455555555555544444455555555555555555544444444444555555554
Q ss_pred CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364 (596)
Q Consensus 285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 364 (596)
| .+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 95 n-------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 131 (270)
T 2o6q_A 95 N-------------------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------ 131 (270)
T ss_dssp S-------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred C-------------------------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------
Confidence 4 444333344455555555555555555333333322
Q ss_pred cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 444 (596)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 444 (596)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++
T Consensus 132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 333566666666666555566888999999999999999777778999999999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
|++++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 999999999877778999999999999999999988754
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.4e-26 Score=229.14 Aligned_cols=226 Identities=23% Similarity=0.282 Sum_probs=129.0
Q ss_pred ccEEeCcCCcCC-CCCCcccC-------CCCCCcEEEcccccccccCCccC--cCCCCCcEEEccCCcccccCChhhcCC
Q 044353 205 IEFLKLSKNHFS-EDIPDCWM-------NWPRLRMLNLGNNNFTGSLPMSI--GALNSLMSLNLRNNRLSGIIPTSFRNL 274 (596)
Q Consensus 205 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l 274 (596)
++.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 555555555552 22332222 45556666666666655555544 5555666666666666544 4444444
Q ss_pred -----CCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCc--CCccc--CCCCCCcEEeCCCCcCcccCCcccc
Q 044353 275 -----SILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD--FPIQL--CRLGSLQILDVAYNSLSGTIPRCIN 345 (596)
Q Consensus 275 -----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~ 345 (596)
++|++|++++|++.+..+..+. .+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ ++...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~- 220 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVC- 220 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHH-
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHH-
Confidence 5566666666665522223332 455666666666654432 12222 555666666666666551 11000
Q ss_pred ccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCC-ccccCcccCCeeecc
Q 044353 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP-VEVTNLQGLQSLNLS 424 (596)
Q Consensus 346 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls 424 (596)
......+++|+.|++++|.+++..| ..+..+++|++|+|+
T Consensus 221 ---------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 221 ---------------------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp ---------------------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred ---------------------------------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 0011124457777777777776553 445567778888888
Q ss_pred CccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353 425 HNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 478 (596)
Q Consensus 425 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 478 (596)
+|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88777 6666655 7788888888888755 54 7777788888888887764
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.4e-27 Score=258.77 Aligned_cols=410 Identities=12% Similarity=0.067 Sum_probs=210.8
Q ss_pred cccCCCCCCEEECcCCcccc---cCCc------------cCcCCCCCCEEECcCCcCccccChhhhh-cCCCCcEEEccC
Q 044353 16 QLGRFKTLRALDLSNNTVNG---PIPL------------SLGQIANLEYLDLSNNKLNGTVSEIHFL-NLTQLLVFRAHG 79 (596)
Q Consensus 16 ~l~~l~~L~~L~ls~n~i~~---~~~~------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~L~~ 79 (596)
.+.++++|++|+++++.... ..|. ....+++|++|+|++|.+++.... .+. .+++|++|++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEES
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCC
Confidence 45678888888888875221 1111 123578888899988887755444 343 688888998888
Q ss_pred C-eeeeE-eCCCCCCCCCccEEEccCCCCCCCcchhh----cCCCCCcEEEcccCc--CcccCChhHHhcCCCCcEEEcc
Q 044353 80 N-SLVFK-INPNWVPPFQLAFLELRSCHLGPRFPLWL----QSQKKLYYLDISSTR--ISAKIPRGFWNSIFQYDYLNVS 151 (596)
Q Consensus 80 n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~ 151 (596)
| .+... .+.....+++|++|++++|.+++..+..+ ..+++|+.|+++++. ++......+...+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 34322 22233467888888888888765444433 366788888888886 3322223334446888888888
Q ss_pred cccccccCCCCCCCCCCccccCCCCC-ceEEcccCc--cccccccccccCCCCCCCccEE-eCcCCcCCCCCCcccCCCC
Q 044353 152 GNQIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNA--LSGSIFHLICQGENFSKNIEFL-KLSKNHFSEDIPDCWMNWP 227 (596)
Q Consensus 152 ~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~--l~~~~~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~l~ 227 (596)
+|......+..+.. .+. +.++++.+. +.......+...+..+++|+.| .+..... +.++..+..++
T Consensus 220 ~~~~~~~l~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~ 289 (594)
T 2p1m_B 220 RAVPLEKLATLLQR---------APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS 289 (594)
T ss_dssp TTSCHHHHHHHHHH---------CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT
T ss_pred CCCcHHHHHHHHhc---------CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhC
Confidence 77211111110000 000 223322221 0000001111122334555555 2222211 11222223445
Q ss_pred CCcEEEcccccccccC-CccCcCCCCCcEEEccCCccccc-CChhhcCCCCCCEEEccC---------CcccccCchhhh
Q 044353 228 RLRMLNLGNNNFTGSL-PMSIGALNSLMSLNLRNNRLSGI-IPTSFRNLSILKALDMGE---------NELVGNIPTWIG 296 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~ 296 (596)
+|++|++++|.+++.. ...+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 5666666655544221 112334555666666555 2211 111222355566665522 233322222223
Q ss_pred hhcccccEEEccCCcCcCcCCcccC-CCCCCcEEeCC--C----CcCcccCCccccccccCcccCCCCCCCCccccCCCC
Q 044353 297 ETFSRLMILNLRSNKFHGDFPIQLC-RLGSLQILDVA--Y----NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369 (596)
Q Consensus 297 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 369 (596)
..+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++ .|..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~-------------------------- 421 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD-------------------------- 421 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH--------------------------
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh--------------------------
Confidence 2355566665555555433222232 35555666555 2 22221 0000
Q ss_pred CceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccC-cccCCeeeccCccCcccCCccc-cCCCCCCEEEC
Q 044353 370 NEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTN-LQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDF 447 (596)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L 447 (596)
.........+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++
T Consensus 422 ------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 422 ------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp ------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred ------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 00011123356677777766 555444444444 6778888888887765544444 55778888888
Q ss_pred CCCcCcccCCc-cccCCCCCCEEecccccCc
Q 044353 448 SANQLSGQIPQ-SMSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 448 s~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~ 477 (596)
++|.+++.... ....+++|+.|++++|+++
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 88877644333 3344677888888887763
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.4e-24 Score=206.33 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=146.9
Q ss_pred cCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccc
Q 044353 223 WMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRL 302 (596)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 302 (596)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|+.|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 344555666666666665 3443332 45666666666666555666666666666666666665 33332 246677
Q ss_pred cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353 303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382 (596)
Q Consensus 303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (596)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------ 122 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------ 122 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence 77777777766 55666677777777777777777544444443
Q ss_pred ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus 123 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 123 --------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp --------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred --------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 334677778888887666777888999999999999999766677888999999999999999 66777777
Q ss_pred CCCCCEEecccccCccCCC
Q 044353 463 LSFLNYLNLSNNNLNGEIP 481 (596)
Q Consensus 463 l~~L~~L~ls~N~l~~~~~ 481 (596)
+++|+.+++++|++.|.|.
T Consensus 194 ~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TCCCSEEECCSCCBCCSGG
T ss_pred cccCCeEEeCCCCccCcCc
Confidence 8899999999999998874
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.3e-24 Score=214.97 Aligned_cols=245 Identities=18% Similarity=0.137 Sum_probs=170.0
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCccc-ccCCccCc-------CCCCCCEEECcCCcCccccChhhh-hcCCCC
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVN-GPIPLSLG-------QIANLEYLDLSNNKLNGTVSEIHF-LNLTQL 72 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L 72 (596)
|++++|.+ .+|..+... |++|++++|.++ ..+|..+. ++++|++|+|++|++++.+|...| ..+++|
T Consensus 48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 123 (312)
T 1wwl_A 48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123 (312)
T ss_dssp HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC
T ss_pred Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc
Confidence 45667777 556655544 777788888774 33454444 677888888888887766666332 777888
Q ss_pred cEEEccCCeeeeEeCCCCCCC-----CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccC--ChhH-HhcCCC
Q 044353 73 LVFRAHGNSLVFKINPNWVPP-----FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKI--PRGF-WNSIFQ 144 (596)
Q Consensus 73 ~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~-~~~l~~ 144 (596)
++|++++|.+++. +..+..+ ++|++|++++|++.+..+..++++++|++|++++|++.+.+ +..+ +..+++
T Consensus 124 ~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 124 NILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp SEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred cEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 8888888877765 5555554 77888888888887777777888888888888888765432 2222 245678
Q ss_pred CcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-ccc
Q 044353 145 YDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCW 223 (596)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~ 223 (596)
|++|++++|++++.. ......+..+++|++|++++|.+.+..| ..+
T Consensus 203 L~~L~L~~N~l~~~~---------------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 203 LQVLALRNAGMETPS---------------------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCEEECTTSCCCCHH---------------------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCEEECCCCcCcchH---------------------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 888888888764100 0000111125688888888888877664 445
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (596)
..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66788888888888888 6676665 7888888888888866 44 7888888888888888763
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=228.26 Aligned_cols=221 Identities=20% Similarity=0.206 Sum_probs=189.5
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 303 (596)
..+++|++|++++|.+++..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|.++ .+|. .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence 345589999999999998888899999999999999999997665 899999999999999997 4442 47999
Q ss_pred EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccc
Q 044353 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGF 383 (596)
Q Consensus 304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (596)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------- 142 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------------------- 142 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-------------------------------------
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-------------------------------------
Confidence 999999999865543 4688999999999999777776655
Q ss_pred eeecccccccccEEEccCCcccccCCcccc-CcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 384 LVEYNSILNLVRSIDISKNNFSGEIPVEVT-NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 384 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++. +. ...+++|+.|+|++|.+++.+|. +..
T Consensus 143 -------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 212 (487)
T 3oja_A 143 -------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQS 212 (487)
T ss_dssp -------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred -------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHh-HcC
Confidence 44489999999999988888876 799999999999999865 33 44689999999999999976554 889
Q ss_pred CCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCC
Q 044353 463 LSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGA 502 (596)
Q Consensus 463 l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~ 502 (596)
+++|+.|++++|.+++..+....++.+..+++.+|+ .|+.
T Consensus 213 l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 999999999999999865555777889999999999 6654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.4e-23 Score=202.22 Aligned_cols=211 Identities=20% Similarity=0.213 Sum_probs=183.2
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999888888999999999999999999888888999999999999999999888899999999999999
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCc-CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGD-FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 361 (596)
++|.+. .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+..++.
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------- 177 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------- 177 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence 999998 45543344799999999999999864 5889999999999999999999776777776665433
Q ss_pred ccccCCCCCceeeeeEEEeccceeeccccccccc-EEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVR-SIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440 (596)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 440 (596)
+. .|++++|.+++..+..+. ..+|++|+|++|++++..+..+..++
T Consensus 178 --------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 178 --------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp --------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred --------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccc
Confidence 33 799999999966665554 45899999999999977777789999
Q ss_pred CCCEEECCCCcCcccC
Q 044353 441 SIESLDFSANQLSGQI 456 (596)
Q Consensus 441 ~L~~L~Ls~N~l~~~~ 456 (596)
+|+.|++++|.+++..
T Consensus 225 ~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCEEECCSSCBCCCT
T ss_pred cccEEEccCCcccccC
Confidence 9999999999998543
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.1e-26 Score=251.62 Aligned_cols=398 Identities=12% Similarity=0.039 Sum_probs=267.1
Q ss_pred ccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCC-cCccccChhhhhcCCCCcEEEccCCeeeeEeCC----CC
Q 044353 17 LGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNN-KLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP----NW 90 (596)
Q Consensus 17 l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 90 (596)
...+++|++|++++|.+++..+..+. .+++|++|+|++| .+++......+.++++|++|++++|.++..... ..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34789999999999999877666665 6899999999999 554221222556899999999999997754433 23
Q ss_pred CCCCCccEEEccCCC--CCC-CcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccccc-------cccC
Q 044353 91 VPPFQLAFLELRSCH--LGP-RFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGNQI-------YGGV 159 (596)
Q Consensus 91 ~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~ 159 (596)
..+++|+.|++++|. +.. .+.....++++|+.|++++| .+. .++. +...+++|++|+++.+.. .+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHHHH
Confidence 367799999999987 321 12223456799999999998 443 3443 345579999999765531 1100
Q ss_pred CCCCCCCCCccccCCCCC-ceE-EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-cccCCCCCCcEEEccc
Q 044353 160 PKFDSPSVPLITTPSLLG-SIF-DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGN 236 (596)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~l-~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 236 (596)
+ .+ ..... +.+ .+.. .....+...+..+++|++|++++|.+++... ..+..+++|++|++++
T Consensus 259 ~-~l---------~~~~~L~~Ls~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 259 V-AL---------SGCKELRCLSGFWD-----AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp H-HH---------HTCTTCCEEECCBT-----CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred H-HH---------hcCCCcccccCCcc-----cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 0 00 00111 222 1111 1112222222346899999999998764322 2356889999999999
Q ss_pred cccccc-CCccCcCCCCCcEEEccC---------CcccccCChhhc-CCCCCCEEEccCCcccccCchhhhhhcccccEE
Q 044353 237 NNFTGS-LPMSIGALNSLMSLNLRN---------NRLSGIIPTSFR-NLSILKALDMGENELVGNIPTWIGETFSRLMIL 305 (596)
Q Consensus 237 n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 305 (596)
| ++.. ++.....+++|++|++++ +.+++.....+. .+++|+.|.+..+.+++.....+...+++|+.|
T Consensus 324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 8 4422 222233588999999943 455544333343 589999999999998866666666568999999
Q ss_pred Ecc--C----CcCcCc-----CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceee
Q 044353 306 NLR--S----NKFHGD-----FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVE 374 (596)
Q Consensus 306 ~L~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 374 (596)
+++ + +.++.. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---------------------------- 453 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---------------------------- 453 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----------------------------
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----------------------------
Confidence 999 3 445421 112256788999999977 555433322221
Q ss_pred eeEEEeccceeecccccccccEEEccCCcccccCCccc-cCcccCCeeeccCccCcccCCc-cccCCCCCCEEECCCCcC
Q 044353 375 DALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPD-NIGVMRSIESLDFSANQL 452 (596)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l 452 (596)
.+++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++.... .+..+++|+.|++++|++
T Consensus 454 ---------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 ---------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ---------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ---------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 25569999999999976655555 6789999999999999654443 445689999999999999
Q ss_pred cccCCccc-cCCCCCCEEecccccC
Q 044353 453 SGQIPQSM-SNLSFLNYLNLSNNNL 476 (596)
Q Consensus 453 ~~~~~~~~-~~l~~L~~L~ls~N~l 476 (596)
+......+ ..+|.|+...+..+.-
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CHHHHHHHHHhCCCCEEEEecCCCc
Confidence 65444444 5578887766665543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=195.67 Aligned_cols=201 Identities=21% Similarity=0.263 Sum_probs=155.1
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 257 (596)
+.++++++.++. ++..+ .+++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 19 ~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 19 NSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 679999998874 33332 35899999999999988888899999999999999999977777788999999999
Q ss_pred ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 9999999888888888999999999999887 455444446777777777777776544445566666666666665554
Q ss_pred ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG 417 (596)
Q Consensus 338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 417 (596)
+..+..|..+++
T Consensus 171 --------------------------------------------------------------------~~~~~~~~~l~~ 182 (270)
T 2o6q_A 171 --------------------------------------------------------------------RVPEGAFDKLTE 182 (270)
T ss_dssp --------------------------------------------------------------------CCCTTTTTTCTT
T ss_pred --------------------------------------------------------------------EeChhHhccCCC
Confidence 334445666777
Q ss_pred CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454 (596)
Q Consensus 418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 454 (596)
|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 8888888888776666667778888888888887764
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.8e-22 Score=196.89 Aligned_cols=207 Identities=21% Similarity=0.209 Sum_probs=173.9
Q ss_pred cCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCC
Q 044353 246 SIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS 325 (596)
Q Consensus 246 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 325 (596)
.+..++++++++++++.++.+. ..+ .++++.|++++|.+. .++...+..+++|++|++++|.+++..+ ...+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred cccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 3567889999999999999544 333 368999999999998 4444444479999999999999985433 278899
Q ss_pred CcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc
Q 044353 326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405 (596)
Q Consensus 326 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 405 (596)
|++|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~--------------------------------------------l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQT--------------------------------------------LPALTVLDVSFNRLT 113 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTT--------------------------------------------CTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCC-cCchhhcc--------------------------------------------CCCCCEEECCCCcCc
Confidence 999999999998 56654433 455899999999999
Q ss_pred ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCc
Q 044353 406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQ 485 (596)
Q Consensus 406 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 485 (596)
+..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|+++...+....
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 77778999999999999999999988888889999999999999999977777889999999999999999966555567
Q ss_pred cCccccccccCCC-CCCCC
Q 044353 486 LQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 486 ~~~l~~~~~~~n~-lc~~~ 503 (596)
...++.+.+.+|| .|.+.
T Consensus 194 ~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TCCCSEEECCSCCBCCSGG
T ss_pred cccCCeEEeCCCCccCcCc
Confidence 7788999999999 77653
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=221.31 Aligned_cols=254 Identities=14% Similarity=0.189 Sum_probs=194.1
Q ss_pred cCccccccccccccCCCCCCCccEEeCcCCcCCCCCC----cccCCCCCCcEEEccccc---ccccCCccC-------cC
Q 044353 184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP----DCWMNWPRLRMLNLGNNN---FTGSLPMSI-------GA 249 (596)
Q Consensus 184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~ 249 (596)
.+.++......+...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +++.+|..+ ..
T Consensus 13 ~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 13 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp ESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 3344444444455555567899999999999876533 347788999999999964 444555444 68
Q ss_pred CCCCcEEEccCCcccc----cCChhhcCCCCCCEEEccCCcccccCchhhhh---hc---------ccccEEEccCCcCc
Q 044353 250 LNSLMSLNLRNNRLSG----IIPTSFRNLSILKALDMGENELVGNIPTWIGE---TF---------SRLMILNLRSNKFH 313 (596)
Q Consensus 250 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~l---------~~L~~L~L~~n~l~ 313 (596)
+++|++|+|++|.+.. ..+..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 8999999999999987 36677889999999999999986444443332 23 89999999999987
Q ss_pred -CcCC---cccCCCCCCcEEeCCCCcCccc-----CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353 314 -GDFP---IQLCRLGSLQILDVAYNSLSGT-----IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL 384 (596)
Q Consensus 314 -~~~~---~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (596)
..++ ..+..+++|++|++++|.++.. .+..+.
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------------------------------------- 213 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------------------------------------- 213 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------------------------------------
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---------------------------------------
Confidence 3334 3567788999999999988621 111222
Q ss_pred eecccccccccEEEccCCccc----ccCCccccCcccCCeeeccCccCccc----CCccc--cCCCCCCEEECCCCcCcc
Q 044353 385 VEYNSILNLVRSIDISKNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNI--GVMRSIESLDFSANQLSG 454 (596)
Q Consensus 385 ~~~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~--~~l~~L~~L~Ls~N~l~~ 454 (596)
.+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++..+ +.+++|++|+|++|.++.
T Consensus 214 -----~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 214 -----YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp -----GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred -----cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 2566899999999996 56788899999999999999999865 45666 348999999999999997
Q ss_pred ----cCCccc-cCCCCCCEEecccccCccCCC
Q 044353 455 ----QIPQSM-SNLSFLNYLNLSNNNLNGEIP 481 (596)
Q Consensus 455 ----~~~~~~-~~l~~L~~L~ls~N~l~~~~~ 481 (596)
.+|..+ .++++|++|++++|++++..+
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477766 668999999999999987653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2e-22 Score=195.08 Aligned_cols=203 Identities=20% Similarity=0.225 Sum_probs=129.8
Q ss_pred CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI 304 (596)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 304 (596)
.+++|+.|++++|.++. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++ .++...+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence 44455555555555442 1 1244455555555555555532 24555555555555555555 333333334555666
Q ss_pred EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL 384 (596)
Q Consensus 305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (596)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------- 155 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------------------------------- 155 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------------------------
Confidence 666666655544555566666666666666666433333332
Q ss_pred eecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044353 385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS 464 (596)
Q Consensus 385 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 464 (596)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+. ++
T Consensus 156 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~ 222 (272)
T 3rfs_A 156 ------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP 222 (272)
T ss_dssp ------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred ------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence 33466677777777766666778889999999999999887887888999999999999988743 56
Q ss_pred CCCEEecccccCccCCCCC
Q 044353 465 FLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 465 ~L~~L~ls~N~l~~~~~~~ 483 (596)
.|+.++++.|.++|.+|..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHHhCCCcccCc
Confidence 7889999999999988864
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.6e-22 Score=194.24 Aligned_cols=186 Identities=20% Similarity=0.255 Sum_probs=111.9
Q ss_pred cCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCc
Q 044353 248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ 327 (596)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 327 (596)
..+++|+.|++++|.+... ..+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455666666666666532 23556666666666666665 232 222 466666666666666655555566666666
Q ss_pred EEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc
Q 044353 328 ILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE 407 (596)
Q Consensus 328 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 407 (596)
+|++++|.+++..+..+.. +++|++|++++|.+++.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~--------------------------------------------l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDK--------------------------------------------LTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp EEECTTSCCCCCCTTTTTT--------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred EEECCCCcCCccCHHHhcc--------------------------------------------CCCCCEEECCCCccCcc
Confidence 6666666666443333333 33356666666666655
Q ss_pred CCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353 408 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 408 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
.+..|..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 555566666666666666666655555566666666666666666665555566666666666666666666553
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.3e-24 Score=214.25 Aligned_cols=256 Identities=18% Similarity=0.202 Sum_probs=187.5
Q ss_pred EEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC----cccCCCC-CCcEEEcccccccccCCccCcCC----
Q 044353 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP----DCWMNWP-RLRMLNLGNNNFTGSLPMSIGAL---- 250 (596)
Q Consensus 180 l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l---- 250 (596)
++++.|.+++.++..+. ..++|++|++++|.+++..+ .++..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45666666665554433 25679999999999987666 6677888 89999999999987767666654
Q ss_pred -CCCcEEEccCCcccccCChhh----cCC-CCCCEEEccCCcccccCchhhhhh----cccccEEEccCCcCcCcC----
Q 044353 251 -NSLMSLNLRNNRLSGIIPTSF----RNL-SILKALDMGENELVGNIPTWIGET----FSRLMILNLRSNKFHGDF---- 316 (596)
Q Consensus 251 -~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~---- 316 (596)
++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+... .++|++|++++|.++...
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 899999999999987766644 344 899999999999985555444322 358999999999888533
Q ss_pred CcccCCCC-CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccccc-ccc
Q 044353 317 PIQLCRLG-SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL-NLV 394 (596)
Q Consensus 317 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L 394 (596)
+..+...+ +|++|++++|.+++..+..+...- ..+ ++|
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~L 198 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPASV 198 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTTC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCCC
Confidence 33345555 899999999998865554443210 112 368
Q ss_pred cEEEccCCccccc----CCccccC-cccCCeeeccCccCcccCC----ccccCCCCCCEEECCCCcCcccC-------Cc
Q 044353 395 RSIDISKNNFSGE----IPVEVTN-LQGLQSLNLSHNLFTGRIP----DNIGVMRSIESLDFSANQLSGQI-------PQ 458 (596)
Q Consensus 395 ~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~-------~~ 458 (596)
+.|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+..+. +.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 9999999999853 4445555 4589999999999986554 34567789999999999855333 34
Q ss_pred cccCCCCCCEEecccccCccC
Q 044353 459 SMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 459 ~~~~l~~L~~L~ls~N~l~~~ 479 (596)
.+..+++|+.||+++|++...
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCGG
T ss_pred HhccCCceEEEecCCCcCCCc
Confidence 567788899999999998755
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.1e-23 Score=212.80 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCC----ccCcCCC-CCCEEECcCCcCccccChhhhhcC-----CC
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIP----LSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNL-----TQ 71 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l-----~~ 71 (596)
+.|++|.+++.+|..+...++|++|++++|.+++..+ .+|..++ +|++|+|++|++++..+ ..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCC
Confidence 4677788887777777777778888888888776555 5666777 77777777777763322 244443 55
Q ss_pred CcEEEccCCeee
Q 044353 72 LLVFRAHGNSLV 83 (596)
Q Consensus 72 L~~L~L~~n~l~ 83 (596)
|++|++++|.+.
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 555555555443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.1e-23 Score=215.13 Aligned_cols=248 Identities=19% Similarity=0.247 Sum_probs=138.9
Q ss_pred CCccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcC---ccccChh------hhhcCCCCcEEEccC
Q 044353 13 LTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKL---NGTVSEI------HFLNLTQLLVFRAHG 79 (596)
Q Consensus 13 ~~~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~------~~~~l~~L~~L~L~~ 79 (596)
++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+ .+.+|.. .+..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455666677777777777777654 233466677777777777533 2333321 123445555555554
Q ss_pred CeeeeEeCCCCCCCCCccEEEccCCCCCC----CcchhhcCCCCCcEEEcccCcCcccCChhHHhc---C---------C
Q 044353 80 NSLVFKINPNWVPPFQLAFLELRSCHLGP----RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS---I---------F 143 (596)
Q Consensus 80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~---l---------~ 143 (596)
|.+.. .++..+..+++|++|++++|.+++..+..+... + +
T Consensus 104 ------------------------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 104 ------------------------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp ------------------------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ------------------------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 44443 244455566666666666666653333333221 1 5
Q ss_pred CCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC-----C
Q 044353 144 QYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-----D 218 (596)
Q Consensus 144 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-----~ 218 (596)
+|++|++++|+++... ...+...+..+++|++|++++|.+.. .
T Consensus 160 ~L~~L~L~~n~l~~~~--------------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 160 PLRSIICGRNRLENGS--------------------------------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp CCCEEECCSSCCTGGG--------------------------------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred CCcEEECCCCCCCcHH--------------------------------HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 6666666666553110 00111122224566666666666652 2
Q ss_pred CCcccCCCCCCcEEEccccccc----ccCCccCcCCCCCcEEEccCCccccc----CChhhcC--CCCCCEEEccCCccc
Q 044353 219 IPDCWMNWPRLRMLNLGNNNFT----GSLPMSIGALNSLMSLNLRNNRLSGI----IPTSFRN--LSILKALDMGENELV 288 (596)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~ 288 (596)
.+..+..+++|++|++++|.++ ..+|..+..+++|+.|+|++|.+.+. .+..+.. +++|+.|++++|.++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 3335566667777777777664 34555666667777777777776644 3344432 677777777777776
Q ss_pred c----cCchhhhhhcccccEEEccCCcCcCcC
Q 044353 289 G----NIPTWIGETFSRLMILNLRSNKFHGDF 316 (596)
Q Consensus 289 ~----~~~~~~~~~l~~L~~L~L~~n~l~~~~ 316 (596)
+ .+|..++..+++|++|++++|.+++..
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4 266665445677777777777776544
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.4e-22 Score=187.27 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=74.8
Q ss_pred CccEEeCcCCcCCCCCCcccCCCCCCcEEEccccc-ccccCCccCcCCCCCcEEEccC-CcccccCChhhcCCCCCCEEE
Q 044353 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN-FTGSLPMSIGALNSLMSLNLRN-NRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 281 (596)
+++.|++++|.++++.+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++++.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666665 5544455566666666666665 666655555566666666666
Q ss_pred ccCCcccccCchhhhhhccccc---EEEccCC-cCcCcCCcccCCCCCCc-EEeCCCCcCc
Q 044353 282 MGENELVGNIPTWIGETFSRLM---ILNLRSN-KFHGDFPIQLCRLGSLQ-ILDVAYNSLS 337 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~ 337 (596)
+++|.++ .+|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++
T Consensus 112 l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 6666665 3444 22444554 5555555 55544444455555555 5555555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=200.91 Aligned_cols=208 Identities=19% Similarity=0.219 Sum_probs=117.0
Q ss_pred CccEEeCcCCcCCCCCCccc--CCCCCCcEEEcccccccccCC----ccCcCCCCCcEEEccCCcccccCChhhcCCCCC
Q 044353 204 NIEFLKLSKNHFSEDIPDCW--MNWPRLRMLNLGNNNFTGSLP----MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSIL 277 (596)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (596)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 45555555555555555444 455555555555555553222 122334455555555555554444445555555
Q ss_pred CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353 278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357 (596)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 357 (596)
++|++++|++.+... -..+..+..+++|++|++++|.++ .++.....
T Consensus 172 ~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~----------- 218 (310)
T 4glp_A 172 TSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGME-TPTGVCAA----------- 218 (310)
T ss_dssp CEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH-----------
T ss_pred CEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH-----------
Confidence 555555554331100 001122345566666777776665 11111000
Q ss_pred CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCc---ccCCeeeccCccCcccCCc
Q 044353 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNL---QGLQSLNLSHNLFTGRIPD 434 (596)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~ 434 (596)
....+++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|.
T Consensus 219 -----------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 219 -----------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp -----------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred -----------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 01113446777777777776656666555 58888888888887 5666
Q ss_pred cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353 435 NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 478 (596)
Q Consensus 435 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 478 (596)
.+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 269 ~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 664 7888888888888854 33 6777888888888888763
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.1e-22 Score=187.00 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=128.5
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCc-ccccCChhhcCCCCCCEEEccC-CcccccCchhhhhhcccccEE
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR-LSGIIPTSFRNLSILKALDMGE-NELVGNIPTWIGETFSRLMIL 305 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 305 (596)
+|++|++++|.+++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 78888888888886666678888888888888886 7767777788888888888887 7776 5555444467777788
Q ss_pred EccCCcCcCcCCcccCCCCCCc---EEeCCCC-cCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEec
Q 044353 306 NLRSNKFHGDFPIQLCRLGSLQ---ILDVAYN-SLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381 (596)
Q Consensus 306 ~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (596)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~----------------------------------- 153 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG----------------------------------- 153 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT-----------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc-----------------------------------
Confidence 877777774 454 66666666 7777777 666433333433
Q ss_pred cceeeccccccccc-EEEccCCcccccCCccccCcccCCeeeccCcc-CcccCCccccCC-CCCCEEECCCCcCcccCCc
Q 044353 382 GFLVEYNSILNLVR-SIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM-RSIESLDFSANQLSGQIPQ 458 (596)
Q Consensus 382 ~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 458 (596)
+++|+ .|++++|.++...+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|+++...+.
T Consensus 154 ---------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 154 ---------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp ---------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred ---------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 33356 6666666666333333443 666666666663 665555566666 6666666666666643332
Q ss_pred cccCCCCCCEEecccc
Q 044353 459 SMSNLSFLNYLNLSNN 474 (596)
Q Consensus 459 ~~~~l~~L~~L~ls~N 474 (596)
.+++|+.|+++++
T Consensus 224 ---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 ---GLEHLKELIARNT 236 (239)
T ss_dssp ---TCTTCSEEECTTC
T ss_pred ---HhccCceeeccCc
Confidence 4456666666654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5.1e-21 Score=182.88 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=124.1
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 307 (596)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+ ++...+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 4556777777666 4554443 466667777766666666666666666666666666652 33322224555555555
Q ss_pred cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY 387 (596)
Q Consensus 308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (596)
++|.+++..+..+..+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~-------------------------------------------------------------- 108 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQ-------------------------------------------------------------- 108 (251)
T ss_dssp TTSCCCCCCTTTTTTCTT--------------------------------------------------------------
T ss_pred CCCcccccChhHhcccCC--------------------------------------------------------------
Confidence 555554433334444444
Q ss_pred ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 044353 388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 467 (596)
Q Consensus 388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 467 (596)
|++|++++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+
T Consensus 109 ------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 109 ------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 45555555555545555677888999999999999877777889999999999999999988888899999999
Q ss_pred EEecccccCccCCC
Q 044353 468 YLNLSNNNLNGEIP 481 (596)
Q Consensus 468 ~L~ls~N~l~~~~~ 481 (596)
.|++++|++.|.+.
T Consensus 183 ~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 183 TITLFGNQFDCSRC 196 (251)
T ss_dssp EEECCSCCBCTTST
T ss_pred EEEeeCCceeCCcc
Confidence 99999999998743
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-22 Score=203.34 Aligned_cols=231 Identities=17% Similarity=0.215 Sum_probs=158.8
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc-CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS-LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5788888888888776554 45678888888888887754 666777888888888888888777777788888888888
Q ss_pred ccCC-ccccc-CchhhhhhcccccEEEccCC-cCcCc-CCcccCCCC-CCcEEeCCCCc--Cc-ccCCccccccccCccc
Q 044353 282 MGEN-ELVGN-IPTWIGETFSRLMILNLRSN-KFHGD-FPIQLCRLG-SLQILDVAYNS--LS-GTIPRCINNFSAMATT 353 (596)
Q Consensus 282 L~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~l 353 (596)
+++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..+.
T Consensus 149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-------- 219 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-------- 219 (336)
T ss_dssp CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------
T ss_pred CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--------
Confidence 8888 56532 33333 36788888888888 77643 455667777 88888888873 33 22222222
Q ss_pred CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCc-ccccCCccccCcccCCeeeccCcc-Cccc
Q 044353 354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN-FSGEIPVEVTNLQGLQSLNLSHNL-FTGR 431 (596)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 431 (596)
.+++|+.|++++|. +++..+..+..+++|++|++++|. +...
T Consensus 220 ------------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 220 ------------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp ------------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred ------------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 24557788888887 666667777788888888888884 3322
Q ss_pred CCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCccCCCCC
Q 044353 432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~ 483 (596)
....++.+++|+.|++++| ++. +.+..+ ..++.|++++|.+++..|..
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 2235677888888888887 332 233333 23666667888887766543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=202.92 Aligned_cols=257 Identities=16% Similarity=0.131 Sum_probs=167.0
Q ss_pred CCCCEEECcCCcccccCCccCcCC--CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeE-eCCCCCCCCCcc
Q 044353 21 KTLRALDLSNNTVNGPIPLSLGQI--ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK-INPNWVPPFQLA 97 (596)
Q Consensus 21 ~~L~~L~ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 97 (596)
..++.++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+... .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34778888887776 3455555 7888888888887755443 55678888888888877644 555677788888
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccc-cccccCCCCCCCCCCccccCCC
Q 044353 98 FLELRSCHLGPRFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGN-QIYGGVPKFDSPSVPLITTPSL 175 (596)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~ 175 (596)
+|++++|.+.+..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---------------- 185 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---------------- 185 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----------------
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----------------
Confidence 8888888887777788888888999999888 6765333344455778888888877 653210
Q ss_pred CCceEEcccCccccccccccccCCCCCC-CccEEeCcCC--cCC-CCCCcccCCCCCCcEEEccccc-ccccCCccCcCC
Q 044353 176 LGSIFDLSNNALSGSIFHLICQGENFSK-NIEFLKLSKN--HFS-EDIPDCWMNWPRLRMLNLGNNN-FTGSLPMSIGAL 250 (596)
Q Consensus 176 ~~~~l~ls~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 250 (596)
+...+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+
T Consensus 186 -------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 186 -------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp -------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred -------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 011112256 7777888777 343 2344455667777788887777 565666677777
Q ss_pred CCCcEEEccCCc-ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353 251 NSLMSLNLRNNR-LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321 (596)
Q Consensus 251 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (596)
++|++|++++|. +.......+..+++|+.|++++| +....-..+. .++..|++++|.+++..|..+.
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccccCCccc
Confidence 777777777774 32222235667777777777777 3321111111 2344555666666665555444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5e-21 Score=188.55 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=116.7
Q ss_pred CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI 304 (596)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 304 (596)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+. .+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence 34455555555555542 22 34555555555555555554333 555556666666666554 333 222 4556666
Q ss_pred EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL 384 (596)
Q Consensus 305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (596)
|++++|.+++. + .+..+++|++|++++|.+++..+ +..
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------------------------------- 149 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------------------------------- 149 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------------------
Confidence 66666666532 2 25666666666666666653211 221
Q ss_pred eecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044353 385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS 464 (596)
Q Consensus 385 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 464 (596)
+++|+.|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..++
T Consensus 150 ------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~ 217 (308)
T 1h6u_A 150 ------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTS 217 (308)
T ss_dssp ------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCT
T ss_pred ------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCC
Confidence 34466677777777643 32 7777888888888888874333 777888888888888887554 377788
Q ss_pred CCCEEecccccCcc
Q 044353 465 FLNYLNLSNNNLNG 478 (596)
Q Consensus 465 ~L~~L~ls~N~l~~ 478 (596)
+|+.|++++|++++
T Consensus 218 ~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 218 NLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEEEEEEEEEC
T ss_pred CCCEEEccCCeeec
Confidence 88888888888765
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=192.45 Aligned_cols=223 Identities=20% Similarity=0.255 Sum_probs=167.9
Q ss_pred CCcEEEcccccccccCCc---cCcCCCCCcEEEccCCcccccCChhh--cCCCCCCEEEccCCcccccCc----hhhhhh
Q 044353 228 RLRMLNLGNNNFTGSLPM---SIGALNSLMSLNLRNNRLSGIIPTSF--RNLSILKALDMGENELVGNIP----TWIGET 298 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~~ 298 (596)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 456666666655421000 11234568888888888877777776 778888888888888875444 2223 5
Q ss_pred cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc--CC--ccccccccCcccCCCCCCCCccccCCCCCceee
Q 044353 299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT--IP--RCINNFSAMATTDSSDPNSGIFYASSGDNEIVE 374 (596)
Q Consensus 299 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 374 (596)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---------------------------- 195 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK---------------------------- 195 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------------
Confidence 88999999999999888888999999999999999997642 11 11122
Q ss_pred eeEEEeccceeecccccccccEEEccCCcccccCCc----cccCcccCCeeeccCccCcccCCccccCC---CCCCEEEC
Q 044353 375 DALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV----EVTNLQGLQSLNLSHNLFTGRIPDNIGVM---RSIESLDF 447 (596)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L 447 (596)
+++|++|++++|.++. ++. .+..+++|++|+|++|++++..|..+..+ ++|++|++
T Consensus 196 ----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 196 ----------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL 258 (310)
T ss_dssp ----------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC
T ss_pred ----------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEEC
Confidence 5568889999999962 232 35788999999999999998878877776 69999999
Q ss_pred CCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCC
Q 044353 448 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLC 500 (596)
Q Consensus 448 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc 500 (596)
++|+++ .+|..+. ++|+.|++++|++++. |....++.++.+++++|++.
T Consensus 259 s~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 259 SFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 999999 5666654 7999999999999974 44567889999999999854
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.8e-20 Score=177.68 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=148.2
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
...+.++++++.++. +|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 467899999999975 554443 58999999999999888889999999999999999999998889999999999999
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------ 145 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------ 145 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence 999998 6666665589999999999999997666667777777777777777663
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 442 (596)
..+..|..+++|++|+|++|++++..+..+..+++|
T Consensus 146 --------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 146 --------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp --------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 333356667777777777777776666677777888
Q ss_pred CEEECCCCcCccc
Q 044353 443 ESLDFSANQLSGQ 455 (596)
Q Consensus 443 ~~L~Ls~N~l~~~ 455 (596)
+.|++++|.+...
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 8888888877754
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4.5e-20 Score=185.41 Aligned_cols=241 Identities=21% Similarity=0.129 Sum_probs=119.4
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe-CCCCCCCCCccE-EEc
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI-NPNWVPPFQLAF-LEL 101 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L 101 (596)
++++-++++++ .+|..+ .+++++|+|++|+|+ .++..+|.++++|++|+|++|.+...+ ..+|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555555555 334333 235555555555555 555445555555555555555543322 234555555443 334
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccc-ccccccCCCCCCCCCCccccCCCCCceE
Q 044353 102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSG-NQIYGGVPKFDSPSVPLITTPSLLGSIF 180 (596)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~l 180 (596)
.+|++.+..+..|..+++|++|++++|+++...+..+ ....++..+++.+ +++....+..+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~--------------- 151 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVG--------------- 151 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTT---------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhh-cccchhhhhhhccccccccccccchhh---------------
Confidence 4455555555556666666666666666553222222 2233455555543 2332111111100
Q ss_pred EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccc-ccccccCCccCcCCCCCcEEEcc
Q 044353 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLR 259 (596)
Q Consensus 181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~ 259 (596)
....++.|++++|.++.+.+..| ...+|+++++.+ |.++...+++|.++++|++|+++
T Consensus 152 --------------------~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 152 --------------------LSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp --------------------SBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred --------------------cchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 01245666666666665444333 334566666653 44554444456666667777777
Q ss_pred CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCC
Q 044353 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN 310 (596)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 310 (596)
+|+++.+.+..| .+|+.|.+.++.-...+|. + ..+++|+.+++.++
T Consensus 211 ~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 211 RTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP 256 (350)
T ss_dssp TSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred CCCcCccChhhh---ccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence 776665444333 3344444433332235553 2 24667777776543
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.1e-20 Score=182.92 Aligned_cols=192 Identities=20% Similarity=0.295 Sum_probs=160.3
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 57899999999998763 4 58889999999999999985444 88999999999999999864 3688999999999
Q ss_pred ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353 282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 361 (596)
+++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +..
T Consensus 114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~--------------- 171 (308)
T 1h6u_A 114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN--------------- 171 (308)
T ss_dssp CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT---------------
T ss_pred CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC---------------
Confidence 9999997 5554 3 378999999999999985433 88899999999999998842 22 322
Q ss_pred ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441 (596)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 441 (596)
+++|+.|++++|.+++..+ +..+++|++|+|++|++++.. .+..+++
T Consensus 172 -----------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~ 218 (308)
T 1h6u_A 172 -----------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSN 218 (308)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred -----------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCC
Confidence 5568999999999985443 888999999999999998554 3889999
Q ss_pred CCEEECCCCcCcc
Q 044353 442 IESLDFSANQLSG 454 (596)
Q Consensus 442 L~~L~Ls~N~l~~ 454 (596)
|+.|++++|.+++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999985
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=174.01 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=131.5
Q ss_pred CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353 278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS 356 (596)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 356 (596)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence 35666666665 5555432 345667777777665433 34667777777777777777554445544
Q ss_pred CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 436 (596)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|
T Consensus 80 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 80 ----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred ----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 3347778888888877777789999999999999999998889999
Q ss_pred cCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccc-cccCCCCCCCCC
Q 044353 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGAS-SFAGNDLCGAPL 504 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~-~~~~n~lc~~~~ 504 (596)
..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.|+..+....+... ...+++.|..|.
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~ 194 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPY 194 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESG
T ss_pred CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCCh
Confidence 99999999999999999888999999999999999999999988754332222222 234566776664
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.5e-19 Score=181.63 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=180.7
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccC-CccCcCCCCCcE-
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSL-PMSIGALNSLMS- 255 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~- 255 (596)
++++.+++.++. +|..+ ++++++|+|++|.++.+.+.+|.++++|++|++++|.+.+.+ +.+|.+++++++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 678888888763 33332 358999999999999877788999999999999999986544 457888888765
Q ss_pred EEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccC-CcCcCcCCcccCCCC-CCcEEeCCC
Q 044353 256 LNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS-NKFHGDFPIQLCRLG-SLQILDVAY 333 (596)
Q Consensus 256 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~ 333 (596)
+.+..|++..+.+..|..+++|++|++++|++. .+|...+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 667789999888999999999999999999997 56655443566788888866 466655555666664 688999999
Q ss_pred CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC-CcccccCCccc
Q 044353 334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK-NNFSGEIPVEV 412 (596)
Q Consensus 334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~ 412 (596)
|.++. +|..... ..+|+.+++++ |.++...+..|
T Consensus 164 N~i~~-i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 164 NGIQE-IHNSAFN--------------------------------------------GTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp SCCCE-ECTTSST--------------------------------------------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred ccccC-CChhhcc--------------------------------------------ccchhHHhhccCCcccCCCHHHh
Confidence 99984 4433222 23478888875 66664445678
Q ss_pred cCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccC
Q 044353 413 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476 (596)
Q Consensus 413 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l 476 (596)
.++++|+.|+|++|+|+...+.. +.+|+.|.+.++.--..+| .+..+++|+.++++++.-
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred ccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 99999999999999998444433 4566777766654443566 478889999999986543
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.7e-20 Score=172.01 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=127.0
Q ss_pred CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353 278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357 (596)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 357 (596)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l---------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------- 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC----------
Confidence 45666676665 6665443 567777787777776666677778888888888888876666666543
Q ss_pred CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 437 (596)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 437 (596)
++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.
T Consensus 80 ----------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 80 ----------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp ----------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 3477888888888866666788999999999999999988899999
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353 438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 438 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
.+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|.-
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 999999999999999988888899999999999999999988764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=8e-19 Score=162.48 Aligned_cols=110 Identities=24% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEE
Q 044353 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN 306 (596)
Q Consensus 227 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 306 (596)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 35555666666555444444555555666666666555554445555556666666666555 34443333455555666
Q ss_pred ccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 307 LRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 307 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+++..+..+..+++|++|++++|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 6555555444444555556666666665555
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.6e-19 Score=163.53 Aligned_cols=135 Identities=25% Similarity=0.288 Sum_probs=120.5
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
.+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46899999999999988777889999999999999999977777789999999999999999988888899999999999
Q ss_pred ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999998 666665557999999999999999776667888999999999998765
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.4e-18 Score=183.52 Aligned_cols=187 Identities=29% Similarity=0.412 Sum_probs=124.3
Q ss_pred CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 044353 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283 (596)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (596)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67788888888776 44433 267888888888877 455 345778888888888776 444 443 77788888
Q ss_pred CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcc
Q 044353 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF 363 (596)
Q Consensus 284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 363 (596)
+|.++ .+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +.
T Consensus 129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 129 NNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 88776 3665 36777777777777774 444 45677777777777764 443 21
Q ss_pred ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccC-------CeeeccCccCcccCCccc
Q 044353 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGL-------QSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~ 436 (596)
++|+.|+|++|.++ .+|. |.. +| +.|+|++|+|+ .+|..+
T Consensus 180 ----------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 180 ----------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ----------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ----------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 23667777777776 4554 443 55 77777777776 566666
Q ss_pred cCCCCCCEEECCCCcCcccCCccccCC
Q 044353 437 GVMRSIESLDFSANQLSGQIPQSMSNL 463 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l 463 (596)
..+++|+.|+|++|.+++.+|..+..+
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 667777777777777776666665543
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.1e-18 Score=161.91 Aligned_cols=158 Identities=21% Similarity=0.207 Sum_probs=126.8
Q ss_pred CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353 277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS 356 (596)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 356 (596)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++...+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 345667777665 6665443 67788888888887777777788888888888888876433333333
Q ss_pred CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 436 (596)
+++|+.|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+
T Consensus 87 ----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 87 ----------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred ----------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 445788888888888777777899999999999999998 788889
Q ss_pred cCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 483 (596)
..+++|++|+|++|+++...+..|..+++|+.|++++|++.|.++..
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 99999999999999999887788999999999999999999988743
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.3e-18 Score=181.92 Aligned_cols=182 Identities=22% Similarity=0.373 Sum_probs=152.2
Q ss_pred CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307 (596)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 307 (596)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.++ .+|. +. .+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence 89999999999985 66655 378999999999999 455 45799999999999998 4887 44 29999999
Q ss_pred cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY 387 (596)
Q Consensus 308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (596)
++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------------------------------------- 158 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------------------------------------- 158 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence 9999996 665 67899999999999984 443 1
Q ss_pred ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC-------CEEECCCCcCcccCCccc
Q 044353 388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI-------ESLDFSANQLSGQIPQSM 460 (596)
Q Consensus 388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~ 460 (596)
+++|+.|++++|.+++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+
T Consensus 159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 4458999999999996 666 65 99999999999999 6776 654 77 99999999999 577777
Q ss_pred cCCCCCCEEecccccCccCCCC
Q 044353 461 SNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 461 ~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
..+++|+.|++++|++++.+|.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHH
Confidence 7799999999999999987653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=6.7e-19 Score=177.53 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=114.5
Q ss_pred cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc-CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR-NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308 (596)
Q Consensus 230 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 308 (596)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..|. .+++|+.|+|++|++. .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 56777777776 4554443 3466777777777766665565 6666666666666665 3333222244555555555
Q ss_pred CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388 (596)
Q Consensus 309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (596)
+|.++...+..|..+++
T Consensus 97 ~N~l~~~~~~~~~~l~~--------------------------------------------------------------- 113 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQA--------------------------------------------------------------- 113 (361)
T ss_dssp SSCCCEECTTTTTTCTT---------------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcC---------------------------------------------------------------
Confidence 55544333333444444
Q ss_pred cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc---cCCCCCCEEECCCCcCcccCCccccCCCC
Q 044353 389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI---GVMRSIESLDFSANQLSGQIPQSMSNLSF 465 (596)
Q Consensus 389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 465 (596)
|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|+++...+..+..++.
T Consensus 114 -----L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 114 -----LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp -----CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred -----CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 4555555555555566677778888888888888875444444 56888888888888888766677777776
Q ss_pred --CCEEecccccCccCCC
Q 044353 466 --LNYLNLSNNNLNGEIP 481 (596)
Q Consensus 466 --L~~L~ls~N~l~~~~~ 481 (596)
++.|++++|++.|.|.
T Consensus 189 ~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 189 WVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHHTTEECCSSCEECCHH
T ss_pred hhcceEEecCCCccCCcC
Confidence 4889999999988765
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.1e-18 Score=165.46 Aligned_cols=189 Identities=21% Similarity=0.296 Sum_probs=109.6
Q ss_pred ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353 205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284 (596)
Q Consensus 205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (596)
+..+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 334445555554322 234556677777777766632 2 35566666666666666664433 56666666666666
Q ss_pred CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364 (596)
Q Consensus 285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 364 (596)
|.+. .++. +. .+++|++|++++|.+++. ..+..+++
T Consensus 100 n~l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~--------------------------------------- 135 (291)
T 1h6t_A 100 NKVK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQ--------------------------------------- 135 (291)
T ss_dssp SCCC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTT---------------------------------------
T ss_pred CcCC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCC---------------------------------------
Confidence 6654 2322 22 344555555555544421 23333444
Q ss_pred cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 444 (596)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 444 (596)
|+.|++++|.+++. ..+..+++|+.|+|++|++++..+ +..+++|+.
T Consensus 136 -----------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 136 -----------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp -----------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred -----------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 55555555555432 356667777777777777764433 677777777
Q ss_pred EECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353 445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 478 (596)
Q Consensus 445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 478 (596)
|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777743 3 36777777777777777754
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=173.40 Aligned_cols=178 Identities=22% Similarity=0.209 Sum_probs=138.0
Q ss_pred CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC-CCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353 278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC-RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS 356 (596)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 356 (596)
+.++++++.+. .+|..+. +.++.|+|++|.+++..+..+. .+++|+.|++++|.+++..+..|..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------- 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP---------- 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC----------
Confidence 46777777776 6666543 4577888888888766666676 7888888888888888655555544
Q ss_pred CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 436 (596)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|
T Consensus 87 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 87 ----------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ----------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 3447888888898887777789999999999999999998889999
Q ss_pred cCCCCCCEEECCCCcCcccCCccc---cCCCCCCEEecccccCccCCCCC-CccCc--cccccccCCC-CCCCC
Q 044353 437 GVMRSIESLDFSANQLSGQIPQSM---SNLSFLNYLNLSNNNLNGEIPSS-TQLQS--FGASSFAGND-LCGAP 503 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~~~~-~~~~~--l~~~~~~~n~-lc~~~ 503 (596)
..+++|+.|+|++|+++...+..| ..+++|+.|+|++|+++...+.. ..++. ++.+.+.+|| .|++.
T Consensus 133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 999999999999999997666666 57999999999999998543321 22333 3678899999 78763
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=5.3e-18 Score=154.49 Aligned_cols=156 Identities=20% Similarity=0.265 Sum_probs=119.2
Q ss_pred cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCc-cccccccCcccCCCCCCCCccccCCCCCceeeeeEEEec
Q 044353 303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR-CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381 (596)
Q Consensus 303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (596)
+.+++++|.++ .+|..+. +++++|++++|.+++..+. .+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~----------------------------------- 52 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR----------------------------------- 52 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence 56777777775 4555443 2778888888877744433 2333
Q ss_pred cceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc
Q 044353 382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461 (596)
Q Consensus 382 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 461 (596)
+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+.
T Consensus 53 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 53 ---------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp ---------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred ---------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 44578888888888878888999999999999999999988888899999999999999999999999999
Q ss_pred CCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCC
Q 044353 462 NLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLS 505 (596)
Q Consensus 462 ~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~ 505 (596)
.+++|++|++++|++.|.++..+....++...+.++. .|+.|..
T Consensus 124 ~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp TCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred cCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 9999999999999999988754333333333444444 6766644
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.8e-18 Score=167.30 Aligned_cols=125 Identities=25% Similarity=0.324 Sum_probs=105.3
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (596)
+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 67899999999999865 3 48889999999999999996544 89999999999999999864 3489999999999
Q ss_pred ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+++|.+. .++ .+. .+++|++|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 119 L~~n~i~-~~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 119 LEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCcCC-CCh-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 9999997 454 333 689999999999999854 56777778888888777776
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2e-17 Score=154.17 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=128.7
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
+++++++++ .+|..+. ++|++|++++|.|+++.+..|..+++|++|+|++|+++ .+....|.++++|++|+|++|.
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc
Confidence 677888888 4565554 78999999999999887888999999999999999998 4543489999999999999999
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccc
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY 156 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (596)
++...+..|..+++|++|+|++|++.+..+..|..+++|+.|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence 997777788999999999999999998888999999999999999999985 44444566889999999999874
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=154.27 Aligned_cols=155 Identities=16% Similarity=0.243 Sum_probs=93.9
Q ss_pred cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308 (596)
Q Consensus 230 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 308 (596)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 45666666665 3444332 344566666666654432 33455555555555555554
Q ss_pred CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388 (596)
Q Consensus 309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (596)
+..+..|..+++|++|++++|.+++..+..|..
T Consensus 71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------ 103 (220)
T 2v70_A 71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKG------------------------------------------ 103 (220)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT------------------------------------------
T ss_pred -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcC------------------------------------------
Confidence 333344455555555555555555333333332
Q ss_pred cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353 389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456 (596)
Q Consensus 389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 456 (596)
+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.++...
T Consensus 104 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 104 --LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp --CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred --CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 223555666666666566777778888888888888888777888888888888888888887543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.1e-18 Score=181.32 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI 304 (596)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 304 (596)
.+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+. .++ .+. .+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCCE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCCE
Confidence 34444444444444442 22 24444444444444444443322 444444444444444443 222 111 3444444
Q ss_pred EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
|+|++|.+.+. ..+..+++|+.|++++|.++
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 44444444421 22344444444444444443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.9e-17 Score=174.49 Aligned_cols=190 Identities=22% Similarity=0.316 Sum_probs=152.7
Q ss_pred CcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308 (596)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 308 (596)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+. .++. + ..+++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-L-TNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-G-GGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-h-ccCCCCCEEECc
Confidence 3444555555553333 45678999999999999854 3 5889999999999999998 4554 3 379999999999
Q ss_pred CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388 (596)
Q Consensus 309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (596)
+|.+.+ ++ .+..+++|+.|++++|.+++ + ..+..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~------------------------------------------ 129 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH------------------------------------------ 129 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGG------------------------------------------
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccC------------------------------------------
Confidence 999985 34 78899999999999999884 2 22332
Q ss_pred cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 044353 389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468 (596)
Q Consensus 389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 468 (596)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++. ..+..+++|+.
T Consensus 130 --l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 130 --LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp --CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred --CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence 55688999999999854 678899999999999999986655 88899999999999999864 35888999999
Q ss_pred EecccccCccC
Q 044353 469 LNLSNNNLNGE 479 (596)
Q Consensus 469 L~ls~N~l~~~ 479 (596)
|+|++|++++.
T Consensus 202 L~L~~N~l~~~ 212 (605)
T 1m9s_A 202 LELFSQECLNK 212 (605)
T ss_dssp EECCSEEEECC
T ss_pred EEccCCcCcCC
Confidence 99999998764
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=3.2e-17 Score=163.12 Aligned_cols=264 Identities=15% Similarity=0.085 Sum_probs=142.0
Q ss_pred CCCCCEEECcCCccc--ccCCccCcCCCCCCEEECcCCcCccccChhhhhc--------CCCCcEEEccCCeeeeEeCCC
Q 044353 20 FKTLRALDLSNNTVN--GPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLN--------LTQLLVFRAHGNSLVFKINPN 89 (596)
Q Consensus 20 l~~L~~L~ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~ 89 (596)
+++|++|||++|+|. ...+..+ +.++.+.+..| .++..+|.+ |++|+.|++.+ .++.....+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 888999999999998 3222222 22455555555 445557777 88888888877 677777777
Q ss_pred CCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcC---cccCChhHHhcCCCCc-EEEcccccccccCCCCCCC
Q 044353 90 WVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI---SAKIPRGFWNSIFQYD-YLNVSGNQIYGGVPKFDSP 165 (596)
Q Consensus 90 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i---~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~ 165 (596)
|..+++|+.+++.+|.+....+..|..+.++..+....+.. ...+....+..+..|+ .+.+....-- +
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~----- 191 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL---E----- 191 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH---H-----
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH---H-----
Confidence 88888888888888877767777777777666666544211 0011222222344554 3333222100 0
Q ss_pred CCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc-CCCCCCcEEEcccccccccCC
Q 044353 166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW-MNWPRLRMLNLGNNNFTGSLP 244 (596)
Q Consensus 166 ~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 244 (596)
..+...--...+++.+.+.++-.. .....+ ..+++|+.+++++|.++...+
T Consensus 192 ---------------------------~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 192 ---------------------------DEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp ---------------------------HHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ---------------------------HHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 000000000123334443332111 000011 124555556665555555555
Q ss_pred ccCcCCCCCcEEEccCCcccccCChhhcCCCCCC-EEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCC
Q 044353 245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK-ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRL 323 (596)
Q Consensus 245 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 323 (596)
.+|.++.+|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++ .++...|..|++|+.+++.+|.++...+.+|.++
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 55555556666666555 5545555566666665 666655 443 4555555556666666666666655555566666
Q ss_pred CCCcEEe
Q 044353 324 GSLQILD 330 (596)
Q Consensus 324 ~~L~~L~ 330 (596)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 6666654
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.2e-16 Score=148.18 Aligned_cols=153 Identities=24% Similarity=0.242 Sum_probs=132.4
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 257 (596)
+.++.+++.+.. ++..+ .++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|+.|+
T Consensus 22 ~~v~c~~~~l~~-ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCc-cCCCC------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 456666555542 22221 37899999999999998899999999999999999999877777789999999999
Q ss_pred ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
|++|.++++.+..|..+++|++|++++|++. .+|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999888888999999999999999998 8888876 7999999999999999777778999999999999999987
Q ss_pred cc
Q 044353 338 GT 339 (596)
Q Consensus 338 ~~ 339 (596)
..
T Consensus 173 c~ 174 (229)
T 3e6j_A 173 CE 174 (229)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.7e-17 Score=165.02 Aligned_cols=220 Identities=11% Similarity=0.073 Sum_probs=152.7
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc----cccCChhhcCCCCC
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL----SGIIPTSFRNLSIL 277 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L 277 (596)
+++|+++++.. .++.+.+.+|.++++|+.+++++|.+....+.+|.++.++..+.+..+.. ..+...+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67888888887 77777777788888888888888887777777787777777666655322 22344556667777
Q ss_pred C-EEEccCCcccccCchhhhhh---cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCccc
Q 044353 278 K-ALDMGENELVGNIPTWIGET---FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATT 353 (596)
Q Consensus 278 ~-~L~L~~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 353 (596)
+ .+.+.... .++..++.. ..++..+.+.++-...........+++|+.+++++|.++...+..|.+++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~----- 250 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK----- 250 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-----
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-----
Confidence 6 45554322 344443322 45666666665422211111112368889999998888855455565544
Q ss_pred CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCC-eeeccCccCcccC
Q 044353 354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRI 432 (596)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~ 432 (596)
+|+.+++.+| +....+.+|.++++|+ ++++.+ +++.+.
T Consensus 251 ---------------------------------------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 251 ---------------------------------------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp ---------------------------------------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred ---------------------------------------CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc
Confidence 4677778777 6656777899999999 999988 677677
Q ss_pred CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353 433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 471 (596)
Q Consensus 433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 471 (596)
+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 788999999999999999999888889999999998864
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.8e-17 Score=148.97 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=89.9
Q ss_pred CCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcc
Q 044353 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT 352 (596)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 352 (596)
.+++|+.|++++|.+. .+| .+. .+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 3444555555555554 344 222 3555555555555443 1224555556666666666555444444333
Q ss_pred cCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCcc-Cccc
Q 044353 353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGR 431 (596)
Q Consensus 353 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 431 (596)
+++|+.|++++|.+++..+..+..+++|++|+|++|+ ++ .
T Consensus 111 --------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~ 151 (197)
T 4ezg_A 111 --------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-D 151 (197)
T ss_dssp --------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-C
T ss_pred --------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-c
Confidence 3335666666666665566667777778888888887 55 4
Q ss_pred CCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353 432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 477 (596)
++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 152 ~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 152 IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 44 577778888888888888753 3 6777788888888888764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.2e-17 Score=155.76 Aligned_cols=168 Identities=19% Similarity=0.318 Sum_probs=105.2
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeC
Q 044353 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDV 331 (596)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 331 (596)
++..++++++.+++.. .+..+++|+.|++++|.+. .++ .+. .+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444455555555332 3445555555555555554 444 222 45566666666666553322 556666666666
Q ss_pred CCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcc
Q 044353 332 AYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVE 411 (596)
Q Consensus 332 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 411 (596)
++|++++ +|... .++|+.|++++|.+++ + ..
T Consensus 93 ~~N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~-~~ 123 (263)
T 1xeu_A 93 NRNRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-T-DS 123 (263)
T ss_dssp CSSCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-S-GG
T ss_pred CCCccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-C-hh
Confidence 6666652 22100 0236777777777764 2 34
Q ss_pred ccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353 412 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479 (596)
Q Consensus 412 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 479 (596)
+..+++|+.|+|++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77788888888888888743 3 577888888888888888865 5678888888888888888765
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.2e-19 Score=187.89 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=49.1
Q ss_pred ccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEecc
Q 044353 394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLS 472 (596)
Q Consensus 394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls 472 (596)
|+.|+|++|.++ .+|..|..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 555555555555 455555556666666666666653 44 4555666666666666665544 5555666666666666
Q ss_pred cccCccCCC
Q 044353 473 NNNLNGEIP 481 (596)
Q Consensus 473 ~N~l~~~~~ 481 (596)
+|++++.++
T Consensus 542 ~N~l~~~~~ 550 (567)
T 1dce_A 542 GNSLCQEEG 550 (567)
T ss_dssp TSGGGGSSS
T ss_pred CCcCCCCcc
Confidence 666655544
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=147.11 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=108.8
Q ss_pred cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353 303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382 (596)
Q Consensus 303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (596)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 46777777776 4554433 57788888888877 55555544
Q ss_pred ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462 (596)
Q Consensus 383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 462 (596)
+++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++...+..|..
T Consensus 53 --------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 53 --------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp --------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred --------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 344788888888888777788999999999999999999888889999999999999999999777778999
Q ss_pred CCCCCEEecccccCccCCCCC
Q 044353 463 LSFLNYLNLSNNNLNGEIPSS 483 (596)
Q Consensus 463 l~~L~~L~ls~N~l~~~~~~~ 483 (596)
+++|+.|++++|++.|.|...
T Consensus 125 l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 125 LSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CTTCCEEECCSSCEECSGGGH
T ss_pred CccccEEEeCCCCeecCCcCH
Confidence 999999999999999988643
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.8e-17 Score=158.98 Aligned_cols=123 Identities=25% Similarity=0.343 Sum_probs=77.9
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (596)
.+++.++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 45666677777776533 4566777777777777776 334 56677777777777777775544 677777777777
Q ss_pred cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353 283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
++|++. .+|.... ++|++|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 777775 3443221 5666666666666532 23555666666666666555
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=145.02 Aligned_cols=153 Identities=25% Similarity=0.289 Sum_probs=81.4
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 303 (596)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++| +
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L-------------------------~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNL-------------------------E 91 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTC-------------------------C
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCC-------------------------C
Confidence 34455566666666555 333 34555555555555554431 1234444444 4
Q ss_pred EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccc
Q 044353 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGF 383 (596)
Q Consensus 304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (596)
+|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~------------------------------------- 134 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT------------------------------------- 134 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-------------------------------------
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-------------------------------------
Confidence 5555544444434444555555555555555555433333332
Q ss_pred eeecccccccccEEEccCCc-ccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 384 LVEYNSILNLVRSIDISKNN-FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 384 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
+++|+.|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 135 -------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 135 -------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred -------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 2235555555555 33 333 46667777777777777764 33 5677777777777777765
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=5.2e-15 Score=150.23 Aligned_cols=268 Identities=12% Similarity=0.102 Sum_probs=204.1
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353 18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA 97 (596)
Q Consensus 18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 97 (596)
.-+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .++..+|.++ +|+.+.+.. .+......+|..+.+|+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 3457788888865 4565667788886 7999998877 65 7777788885 699999876 67777778899999999
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353 98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177 (596)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
.+++.+|.+.......|. +.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~-------------------- 239 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VST-------------------- 239 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCE--------------------
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccC--------------------
Confidence 999998888877677776 688999998755 55 566666677888999888764 211
Q ss_pred ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc-----ccCCccCcCCCC
Q 044353 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT-----GSLPMSIGALNS 252 (596)
Q Consensus 178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~ 252 (596)
+....| .. .+|+.+.+. +.+..+...+|.++++|+.+++.++.+. ...+.+|.++++
T Consensus 240 ----I~~~aF------------~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 240 ----IGQEAF------------RE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp ----ECTTTT------------TT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred ----cccccc------------cc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 111111 11 468888884 4566677788999999999999887664 466778999999
Q ss_pred CcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC-CCcEEeC
Q 044353 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG-SLQILDV 331 (596)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l 331 (596)
|+.+++.+ .+..+...+|.++++|+.+.+..+ ++ .+....|..+ +|+.+++.+|......+..|.+++ +++.|.+
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 99999984 577788889999999999999665 54 6777777778 999999999988766667787775 7888888
Q ss_pred CCCcCc
Q 044353 332 AYNSLS 337 (596)
Q Consensus 332 ~~n~l~ 337 (596)
..+.+.
T Consensus 378 p~~~~~ 383 (401)
T 4fdw_A 378 PAESVE 383 (401)
T ss_dssp CGGGHH
T ss_pred CHHHHH
Confidence 876544
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=9.4e-15 Score=149.05 Aligned_cols=335 Identities=11% Similarity=0.058 Sum_probs=161.1
Q ss_pred ccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcch
Q 044353 33 VNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPL 112 (596)
Q Consensus 33 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 112 (596)
++.+-..+|.+|.+|+.+.|..+ ++ .++..+|.+|.+|+.+++..+ ++.....+|..+..|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 33344455555555555555433 43 455555555555555555433 44444445555555555544432 2223334
Q ss_pred hhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccc
Q 044353 113 WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIF 192 (596)
Q Consensus 113 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~ 192 (596)
.|..+..+........ . .+....+..+.+|+.+.+..+... +..
T Consensus 135 aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~~-------------------------I~~-------- 178 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSMET-------------------------LHN-------- 178 (394)
T ss_dssp TTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCCE-------------------------ECT--------
T ss_pred eeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccce-------------------------ecc--------
Confidence 4444433322222111 1 122233344555665555433210 000
Q ss_pred cccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc
Q 044353 193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272 (596)
Q Consensus 193 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 272 (596)
..+..+.+|+.+.+..+ +..+...+|.++..|+.+.+..+... +.+.+.....|+.+.+... +..+...+|.
T Consensus 179 ----~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~ 250 (394)
T 4fs7_A 179 ----GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFY 250 (394)
T ss_dssp ----TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTT
T ss_pred ----ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccc
Confidence 01112344555555443 33334445555555555555443322 1222223345555555433 2224445555
Q ss_pred CCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcc
Q 044353 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT 352 (596)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 352 (596)
++..++.+.+..+.. .+....+..+..++.+......+ ....|..+.+|+.+.+..+ ++.....+|.++.+
T Consensus 251 ~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~--- 321 (394)
T 4fs7_A 251 GCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS--- 321 (394)
T ss_dssp TCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT---
T ss_pred ccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCC---
Confidence 556666665555432 23333343455555555544322 1234555566666666543 33233334444333
Q ss_pred cCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC
Q 044353 353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432 (596)
Q Consensus 353 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 432 (596)
|+.++|..+ ++.....+|.+|++|+++++..+ ++.+.
T Consensus 322 -----------------------------------------L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 322 -----------------------------------------LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp -----------------------------------------CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred -----------------------------------------CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 344444322 33344567777888888888766 55566
Q ss_pred CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353 433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469 (596)
Q Consensus 433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 469 (596)
..+|.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 677888888888888654 33 234567777777654
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=6.6e-17 Score=177.20 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=92.3
Q ss_pred CCccEEeCcCCcCCCCCCcccCCCCCC-----cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCC
Q 044353 203 KNIEFLKLSKNHFSEDIPDCWMNWPRL-----RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSIL 277 (596)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (596)
+.++.|++.+|.+... +..+.....| ..+++..|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3456666666665542 2222111112 22223333333 44666667777777777777776 344445567777
Q ss_pred CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353 278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357 (596)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 357 (596)
++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~--------- 316 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC--------- 316 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT---------
T ss_pred CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC---------
Confidence 77777777776 6776654 5777777777777777 55667777777777777777776 5565554433
Q ss_pred CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc-CCeeeccCccCcccCCccc
Q 044353 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG-LQSLNLSHNLFTGRIPDNI 436 (596)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~ 436 (596)
+|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 317 -----------------------------------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 317 -----------------------------------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -----------------------------------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -----------------------------------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 3666777777777666666544322 22366777777766654
Q ss_pred cCCCCCCEEECCCC--------cCcccCCccccCCCCCCEEecccccCc
Q 044353 437 GVMRSIESLDFSAN--------QLSGQIPQSMSNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 437 ~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~ls~N~l~ 477 (596)
.|+.|++++| .+....+..+..+..+....+++|-+.
T Consensus 360 ----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 ----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----C-----------------------------------------CCC
T ss_pred ----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3445555555 333333344455555666666777664
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1e-14 Score=148.08 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=206.6
Q ss_pred cCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc
Q 044353 42 GQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY 121 (596)
Q Consensus 42 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 121 (596)
..+..++.+.+.++ ++ .++..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+.......|.+|++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 34578899999875 55 7777799986 7999999876 777777888885 799999986 67777788899999999
Q ss_pred EEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCC
Q 044353 122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENF 201 (596)
Q Consensus 122 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~ 201 (596)
.+++.+|.++ .++...+. +.+|+.+.+..+ +... .. ..+..
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I------------------------~~------------~aF~~ 224 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEI------------------------GS------------QAFLK 224 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEE------------------------CT------------TTTTT
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCCc-hhee------------------------hh------------hHhhC
Confidence 9999999987 56666555 578999988644 3211 11 22334
Q ss_pred CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccc-----ccCChhhcCCCC
Q 044353 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS-----GIIPTSFRNLSI 276 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 276 (596)
+++|+.+++..+ ++.+...+|.+ ++|+.+.+. +.++.....+|.++++|+.+++.++.+. .+.+.+|.++++
T Consensus 225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 788999999875 66667778888 789999994 4577677889999999999999988765 577889999999
Q ss_pred CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccc-cCcccCC
Q 044353 277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS-AMATTDS 355 (596)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l 355 (596)
|+.+++.+ .+. .++...|..|.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|......+..|..++ .+..+.+
T Consensus 302 L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 302 LARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 99999984 465 788888878999999999655 665667789999 999999999988766667777764 4555555
Q ss_pred CC
Q 044353 356 SD 357 (596)
Q Consensus 356 ~~ 357 (596)
..
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 43
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=8.5e-18 Score=178.56 Aligned_cols=197 Identities=19% Similarity=0.176 Sum_probs=159.9
Q ss_pred CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc-------------ccccCChhhcCCCCCCEEE-ccCCcccc
Q 044353 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR-------------LSGIIPTSFRNLSILKALD-MGENELVG 289 (596)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 289 (596)
..++.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999998 789999999999999997775 4556677888888898888 6666543
Q ss_pred cCchhhh-----h--hcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353 290 NIPTWIG-----E--TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362 (596)
Q Consensus 290 ~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 362 (596)
.++.... . ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------------- 485 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL--------------- 485 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC---------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC---------------
Confidence 3322110 0 12368999999999985 665 889999999999999998 778777654
Q ss_pred cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC-CccccCCCC
Q 044353 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRS 441 (596)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~ 441 (596)
++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..++.+++
T Consensus 486 -----------------------------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 486 -----------------------------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp -----------------------------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred -----------------------------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 448899999999995 66 8999999999999999999776 999999999
Q ss_pred CCEEECCCCcCcccCCc---cccCCCCCCEEec
Q 044353 442 IESLDFSANQLSGQIPQ---SMSNLSFLNYLNL 471 (596)
Q Consensus 442 L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l 471 (596)
|+.|+|++|.+++.+|. .+..+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999976553 2345899999875
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1e-14 Score=148.76 Aligned_cols=318 Identities=8% Similarity=0.010 Sum_probs=217.9
Q ss_pred CccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353 57 LNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136 (596)
Q Consensus 57 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 136 (596)
++ .|+..+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++......|..++.|+.+.+..+ +. .+..
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred Ee-EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 44 67777899999999999975 477777788999999999999754 66566777888888888776544 32 2333
Q ss_pred hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC
Q 044353 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS 216 (596)
Q Consensus 137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 216 (596)
..+..+. +......... ..+. ..++..+++|+.+.+..+. .
T Consensus 134 ~aF~~~~-~~~~~~~~~~-------------------------~~i~------------~~aF~~c~~L~~i~l~~~~-~ 174 (394)
T 4fs7_A 134 EAFKGCD-FKEITIPEGV-------------------------TVIG------------DEAFATCESLEYVSLPDSM-E 174 (394)
T ss_dssp TTTTTCC-CSEEECCTTC-------------------------CEEC------------TTTTTTCTTCCEEECCTTC-C
T ss_pred eeeeccc-ccccccCccc-------------------------cccc------------hhhhcccCCCcEEecCCcc-c
Confidence 3333332 2222111110 0011 1234447889999987653 4
Q ss_pred CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh
Q 044353 217 EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG 296 (596)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (596)
.+...+|.++.+|+.+.+..+ ++.....+|.++..|+.+.+..+... +. ..+....+|+.+.+.... . .+....+
T Consensus 175 ~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~ip~~~-~-~i~~~~f 249 (394)
T 4fs7_A 175 TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIIIPDSF-T-ELGKSVF 249 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEECTTC-C-EECSSTT
T ss_pred eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEECCCc-e-ecccccc
Confidence 456678888999999998776 55566778888889988888776544 32 333455678888886543 2 4555556
Q ss_pred hhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353 297 ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376 (596)
Q Consensus 297 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 376 (596)
..+..++.+.+..+... .....|..+..++.+....+.+. ...+..
T Consensus 250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~------------------------------ 295 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG------------------------------ 295 (394)
T ss_dssp TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT------------------------------
T ss_pred cccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc------------------------------
Confidence 57888999888776543 55667888888888877654322 122322
Q ss_pred EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456 (596)
Q Consensus 377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 456 (596)
+.+|+.+.+..+ +......+|.++++|++++|..+ ++.+...+|.++.+|+.+++..+ ++.+.
T Consensus 296 --------------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 296 --------------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp --------------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred --------------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 444666666544 44455677889999999999755 66566788899999999999877 77677
Q ss_pred CccccCCCCCCEEecccc
Q 044353 457 PQSMSNLSFLNYLNLSNN 474 (596)
Q Consensus 457 ~~~~~~l~~L~~L~ls~N 474 (596)
..+|.++++|+.+++..+
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 788999999999998765
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.1e-16 Score=175.42 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=122.3
Q ss_pred EeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcc
Q 044353 208 LKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL 287 (596)
Q Consensus 208 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (596)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344444443 45777899999999999999998 67777779999999999999999 7788899999999999999999
Q ss_pred cccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCC
Q 044353 288 VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASS 367 (596)
Q Consensus 288 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 367 (596)
+ .+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+...
T Consensus 283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------- 342 (727)
T 4b8c_D 283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------- 342 (727)
T ss_dssp S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence 8 8898877 7999999999999998 778889999999999999999998888777553221
Q ss_pred CCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCc--------cCcccCCccccCC
Q 044353 368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHN--------LFTGRIPDNIGVM 439 (596)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~~l 439 (596)
+..+++++|.+++.+|.. |+.|++++| .+.+..+..+..+
T Consensus 343 --------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l 390 (727)
T 4b8c_D 343 --------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDL 390 (727)
T ss_dssp --------------------------HHHHHHHHCCCCCCCCCC------------------------------------
T ss_pred --------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcc
Confidence 223677788887766654 455666666 3333444445566
Q ss_pred CCCCEEECCCCcCc
Q 044353 440 RSIESLDFSANQLS 453 (596)
Q Consensus 440 ~~L~~L~Ls~N~l~ 453 (596)
..++...+++|-+.
T Consensus 391 ~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 391 AKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------CCC
T ss_pred cccceeeeeccccc
Confidence 66777777888765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.3e-15 Score=136.97 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=108.3
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCc-cCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPL-SLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 80 (596)
+++++|+++ .+|..+.. ++++|++++|.+++..+. .|..+++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus 13 l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 13 VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGEN 88 (192)
T ss_dssp EECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSC
T ss_pred EEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCC
Confidence 688888885 56665543 889999999999876654 488899999999999998854454 8888999999999999
Q ss_pred eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353 81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136 (596)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 136 (596)
.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99888888888899999999999999888888888889999999999988766553
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.3e-15 Score=133.36 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=78.5
Q ss_pred cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEe
Q 044353 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 470 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 470 (596)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 33467777777777766666788899999999999999977777789999999999999999977777788999999999
Q ss_pred cccccCccCCCCC
Q 044353 471 LSNNNLNGEIPSS 483 (596)
Q Consensus 471 ls~N~l~~~~~~~ 483 (596)
+++|++.|.++..
T Consensus 131 l~~N~~~~~~~~l 143 (177)
T 2o6r_A 131 LHTNPWDCSCPRI 143 (177)
T ss_dssp CCSSCBCCCHHHH
T ss_pred ecCCCeeccCccH
Confidence 9999999887743
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.2e-15 Score=132.99 Aligned_cols=137 Identities=21% Similarity=0.162 Sum_probs=116.4
Q ss_pred CCCccEEeCcCCcCC-CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353 202 SKNIEFLKLSKNHFS-EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 280 (596)
+++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 578999999999997 56787888999999999999999865 778899999999999999998788888889999999
Q ss_pred EccCCcccccCch-hhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCCCCcCcccCCc
Q 044353 281 DMGENELVGNIPT-WIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVAYNSLSGTIPR 342 (596)
Q Consensus 281 ~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~ 342 (596)
++++|.++ .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999997 5542 333378999999999999986544 47889999999999999887 4443
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.1e-15 Score=134.18 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=59.9
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC-CccccCCCCCCEEECCCCcCcccCC---ccccCCCCCC
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQIP---QSMSNLSFLN 467 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~ 467 (596)
++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 33555666666665455666666777777777777777432 2567777888888888888875554 4677788888
Q ss_pred EEecccccCcc
Q 044353 468 YLNLSNNNLNG 478 (596)
Q Consensus 468 ~L~ls~N~l~~ 478 (596)
.|++++|.+..
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 88888887653
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.9e-15 Score=131.51 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=100.1
Q ss_pred cccccEEEccCCcCc-CcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeE
Q 044353 299 FSRLMILNLRSNKFH-GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDAL 377 (596)
Q Consensus 299 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 377 (596)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467888888888877 56777777888888888888887743 22222
Q ss_pred EEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc-CCccccCCCCCCEEECCCCcCcccC
Q 044353 378 LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR-IPDNIGVMRSIESLDFSANQLSGQI 456 (596)
Q Consensus 378 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 456 (596)
+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|.+++..
T Consensus 63 -------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 63 -------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp -------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred -------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 45578888888888866777777788999999999998853 3477888999999999999998766
Q ss_pred C---ccccCCCCCCEEeccc
Q 044353 457 P---QSMSNLSFLNYLNLSN 473 (596)
Q Consensus 457 ~---~~~~~l~~L~~L~ls~ 473 (596)
+ ..+..+++|+.||+++
T Consensus 130 ~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 130 DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHHCCCcccccCCC
Confidence 5 5788889999998864
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=132.80 Aligned_cols=125 Identities=22% Similarity=0.229 Sum_probs=60.4
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
+++++|+++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|+|+ .++...|.++++|++|+|++|.
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCc
Confidence 344455544 2333222 34555555555554 33444555555555555555554 3333345555555555555555
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCc
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRIS 131 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 131 (596)
++...+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55444444555555555555555554444444444555555555555443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2e-14 Score=129.01 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=94.2
Q ss_pred eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353 2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81 (596)
Q Consensus 2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 81 (596)
+++++|+++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|+++ .++...|.++++|++|++++|.
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC
Confidence 5667777763 34332 367888888888887666666777888888888888877 5555467778888888888888
Q ss_pred eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCC
Q 044353 82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135 (596)
Q Consensus 82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 135 (596)
++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 776666667777788888888887776666666777788888888887765444
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=7.6e-15 Score=127.66 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=95.4
Q ss_pred CCCccEEeCcCCcCC-CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353 202 SKNIEFLKLSKNHFS-EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280 (596)
Q Consensus 202 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 280 (596)
.++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 357888888888887 56777778888888888888888754 667788888888888888887677777778888888
Q ss_pred EccCCcccccCc--hhhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCC
Q 044353 281 DMGENELVGNIP--TWIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVA 332 (596)
Q Consensus 281 ~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 332 (596)
++++|.++ .++ ..+. .+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888876 333 3333 67778888888887775444 356777777777765
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=4.8e-14 Score=125.34 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=85.1
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 471 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 471 (596)
+.|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34899999999999888999999999999999999999877888899999999999999999888888999999999999
Q ss_pred ccccCccCCCCC
Q 044353 472 SNNNLNGEIPSS 483 (596)
Q Consensus 472 s~N~l~~~~~~~ 483 (596)
++|++.|.++..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999988744
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=7.2e-14 Score=125.15 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=56.7
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCc--cccCCCCCCEEECCCCcCcccCCc----cccCCCC
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQ----SMSNLSF 465 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~ 465 (596)
++|+.|++++|.+++..+..|..+++|++|+|++|+++ .+|. .+..+++|+.|++++|.++. .|. .+..+++
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQ 141 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTT
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCc
Confidence 34556666666665444444567777777777777775 4444 67777788888888888773 344 3777788
Q ss_pred CCEEecccccCc
Q 044353 466 LNYLNLSNNNLN 477 (596)
Q Consensus 466 L~~L~ls~N~l~ 477 (596)
|+.||+++|...
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 888888877654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.7e-13 Score=122.21 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=83.8
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 471 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 471 (596)
+.|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34899999999999888999999999999999999999777777899999999999999999777777999999999999
Q ss_pred ccccCccCCCCC
Q 044353 472 SNNNLNGEIPSS 483 (596)
Q Consensus 472 s~N~l~~~~~~~ 483 (596)
++|++.|.++..
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 999999887644
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=123.31 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=108.3
Q ss_pred CCCCccEEeCcCCcCCCCCCcccCCC-CCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353 201 FSKNIEFLKLSKNHFSEDIPDCWMNW-PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279 (596)
Q Consensus 201 ~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 279 (596)
.+++|++|++++|.++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 367899999999999854 54 4444 4999999999999865 67889999999999999999777677789999999
Q ss_pred EEccCCcccccCch--hhhhhcccccEEEccCCcCcCcCCc----ccCCCCCCcEEeCCCCcCc
Q 044353 280 LDMGENELVGNIPT--WIGETFSRLMILNLRSNKFHGDFPI----QLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 280 L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 337 (596)
|++++|.+. .+|. .+. .+++|++|++++|.++ ..|. .+..+++|+.||+++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999996 6776 444 7899999999999998 4555 3888999999999998865
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.9e-15 Score=138.45 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=121.3
Q ss_pred eeecCCCccccCCc------cccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEE
Q 044353 2 LFLRRSQFYGHLTN------QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75 (596)
Q Consensus 2 l~L~~n~l~~~~~~------~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 75 (596)
++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .++. .+..+++|++|
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L 98 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEEL 98 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEE
Confidence 57888889888887 89999999999999999986 56 8889999999999999998 7776 77788999999
Q ss_pred EccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCCh---------hHHhcCCCC
Q 044353 76 RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPR---------GFWNSIFQY 145 (596)
Q Consensus 76 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---------~~~~~l~~L 145 (596)
++++|.++... .+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|. ..+..+++|
T Consensus 99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 99999987632 57778899999999999986443 5788999999999999998765443 234567899
Q ss_pred cEEEccccccc
Q 044353 146 DYLNVSGNQIY 156 (596)
Q Consensus 146 ~~L~l~~n~l~ 156 (596)
+.|+ ++.++
T Consensus 177 ~~Ld--~~~i~ 185 (198)
T 1ds9_A 177 KKLD--GMPVD 185 (198)
T ss_dssp SEEC--CGGGT
T ss_pred EEEC--CcccC
Confidence 9886 55553
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.6e-11 Score=125.02 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=61.3
Q ss_pred ccccCCccCcCCC-CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe---eeeEeCCCCCCCCCccEEEccCCCCCC
Q 044353 33 VNGPIPLSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS---LVFKINPNWVPPFQLAFLELRSCHLGP 108 (596)
Q Consensus 33 i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~ 108 (596)
++.+-..+|.+++ .|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 3334445666664 4777777654 44 5666677777777777766542 44455556666666666555443 333
Q ss_pred CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcc
Q 044353 109 RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVS 151 (596)
Q Consensus 109 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 151 (596)
.....|..+.+|+.+.+..+. . .+....+..+..|+.+.+.
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECC
T ss_pred ehhhhhhhhccccccccccee-e-eecccceeccccccccccc
Confidence 444455566666666654332 1 2333333444455555443
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.8e-11 Score=124.72 Aligned_cols=135 Identities=8% Similarity=0.074 Sum_probs=104.3
Q ss_pred cCCccccCCC-CCCEEECcCCcccccCCccCcCCCCCCEEECcCCc---CccccChhhhhcCCCCcEEEccCCeeeeEeC
Q 044353 12 HLTNQLGRFK-TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNK---LNGTVSEIHFLNLTQLLVFRAHGNSLVFKIN 87 (596)
Q Consensus 12 ~~~~~l~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 87 (596)
....+|.+++ .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..|. ++ .++..+|.++.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence 3455788885 5999999764 776778999999999999998874 55 788889999999999888654 566777
Q ss_pred CCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccc
Q 044353 88 PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGN 153 (596)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 153 (596)
.+|..+.+|+.+.+..+ +.......|..+..|+.+.+.++ ++ .+....+. ...|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~ 192 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK 192 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc
Confidence 89999999999999754 44466778899999999998765 33 34444444 357888777544
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.8e-15 Score=138.58 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=53.4
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCC-ccccCCCCCCEEECCCCcCcccCCc----------cc
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQ----------SM 460 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~ 460 (596)
++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 336666666666653 33 46667777777777777764322 3567777777777777777655443 26
Q ss_pred cCCCCCCEEecccccCc
Q 044353 461 SNLSFLNYLNLSNNNLN 477 (596)
Q Consensus 461 ~~l~~L~~L~ls~N~l~ 477 (596)
..+++|+.|| +|+++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6777788776 56554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.7e-12 Score=115.34 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=79.9
Q ss_pred CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEcc
Q 044353 23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELR 102 (596)
Q Consensus 23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 102 (596)
.+++++++|.++. +|..+. ++|++|+|++|+|+ .++...|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4677777777774 455442 67788888888877 4433377778888888888888776666677778888888888
Q ss_pred CCCCCCCcchhhcCCCCCcEEEcccCcCcccC
Q 044353 103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKI 134 (596)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 134 (596)
+|++++..+..+..+++|+.|++++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88887776777888888888888888887543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.8e-12 Score=115.48 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=77.0
Q ss_pred CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353 24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS 103 (596)
Q Consensus 24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 103 (596)
+.+++++|.++ .+|..+. ++|++|+|++|+++ .++...|.++++|++|+|++|.++...+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 67777777776 4455443 67778888888777 34333777777888888888877776666677778888888888
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 044353 104 CHLGPRFPLWLQSQKKLYYLDISSTRISA 132 (596)
Q Consensus 104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 132 (596)
|++.+..+..+..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88876666668888888888888888764
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=7.4e-14 Score=140.37 Aligned_cols=166 Identities=19% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCcEEEccCCcccccCChhhcC-----CCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc-----
Q 044353 251 NSLMSLNLRNNRLSGIIPTSFRN-----LSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL----- 320 (596)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 320 (596)
+.|+.|++++|.++......+.. .++|++|+|++|.+.+.....+...+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56777777777776544333332 25788888888877644444444456677788888777764322222
Q ss_pred CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEcc
Q 044353 321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDIS 400 (596)
Q Consensus 321 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 400 (596)
...++|++|++++|.++......+.. ....+++|++|+|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----------------------------------------~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLME----------------------------------------GLAGNTSVTHLSLL 191 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHH----------------------------------------HHHTCSSCCEEECT
T ss_pred hcCCccceeeCCCCCCChHHHHHHHH----------------------------------------HHhcCCCcCEEeCC
Confidence 23567777777777765321111110 00113346666666
Q ss_pred CCccccc----CCccccCcccCCeeeccCccCcccC----CccccCCCCCCEEECCCCcCcccC
Q 044353 401 KNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRI----PDNIGVMRSIESLDFSANQLSGQI 456 (596)
Q Consensus 401 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~ 456 (596)
+|.+++. ++..+...++|++|+|++|.+++.. ...+...++|++|+|++|.++...
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 6666532 2334455556666666666665322 222334456666666666665433
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=8.7e-10 Score=111.64 Aligned_cols=277 Identities=10% Similarity=0.071 Sum_probs=130.7
Q ss_pred ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCc
Q 044353 17 LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQL 96 (596)
Q Consensus 17 l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 96 (596)
+....+|+.+.+.. .++.+-..+|.+|.+|+.++|..+ ++ .++..+|.++ +|+.+.+..+ ++.....+|..+ +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 44456677777654 455555667777777777777644 44 6666677776 4666655432 444444555543 56
Q ss_pred cEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCC
Q 044353 97 AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176 (596)
Q Consensus 97 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 176 (596)
+.+.+.++ +.......|.++ .++.+.+..+ ++ .+....+..+..++.+.+..+.........
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-------------- 177 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENY-------------- 177 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETT--------------
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccc--------------
Confidence 77666543 222333334433 3444443322 22 122222333455555544433211000000
Q ss_pred CceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEE
Q 044353 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256 (596)
Q Consensus 177 ~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 256 (596)
..... .......+.....+..+.+.... ......++..+.+|+.+.+..+ +......+|.++..|+.+
T Consensus 178 ---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i 245 (379)
T 4h09_A 178 ---VLYNK-------NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEI 245 (379)
T ss_dssp ---EEEET-------TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEE
T ss_pred ---eeccc-------ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEE
Confidence 00000 00000111113344444443322 1223344555556666666443 333444555566666666
Q ss_pred EccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCC
Q 044353 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332 (596)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 332 (596)
.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+-..+|.++.+|+.+++.
T Consensus 246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred EcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 66544 44455555666666666655433 22 4444444455555555555554443334455555555555553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=6.3e-12 Score=125.85 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=82.1
Q ss_pred cccccEEEccC-CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353 391 LNLVRSIDISK-NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469 (596)
Q Consensus 391 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 469 (596)
+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34489999996 999988888999999999999999999999999999999999999999999987777777777 9999
Q ss_pred ecccccCccCCCC
Q 044353 470 NLSNNNLNGEIPS 482 (596)
Q Consensus 470 ~ls~N~l~~~~~~ 482 (596)
++++|++.|.|..
T Consensus 109 ~l~~N~~~c~c~l 121 (347)
T 2ifg_A 109 VLSGNPLHCSCAL 121 (347)
T ss_dssp ECCSSCCCCCGGG
T ss_pred EeeCCCccCCCcc
Confidence 9999999988763
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=2e-09 Score=108.96 Aligned_cols=300 Identities=9% Similarity=0.044 Sum_probs=198.5
Q ss_pred ccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC
Q 044353 9 FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP 88 (596)
Q Consensus 9 l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 88 (596)
++.....+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +. .++..+|.++ +|+.+.+..+ +......
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~~-~~~i~~~ 130 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPGA-TTEIGNY 130 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCCc-ccccccc
Confidence 44445668999999999999764 676777889888 6888888765 54 7777788876 7999999765 4445556
Q ss_pred CCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEE-EcccccccccCCCCCCCCC
Q 044353 89 NWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYL-NVSGNQIYGGVPKFDSPSV 167 (596)
Q Consensus 89 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~ 167 (596)
+|..+ .|+...+..+ ++......+..+..++.+.+................ ...... ....+. ..
T Consensus 131 ~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~ 196 (379)
T 4h09_A 131 IFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN-KNKTILESYPAAK-----------TG 196 (379)
T ss_dssp TTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE-TTSSEEEECCTTC-----------CC
T ss_pred ccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecc-cccceeccccccc-----------cc
Confidence 67665 5666666543 444556678888999988877654321111111000 000000 000000 00
Q ss_pred CccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccC
Q 044353 168 PLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI 247 (596)
Q Consensus 168 ~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 247 (596)
..+.+... ........+..+.+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.....+|
T Consensus 197 ----------~~~~~~~~-----~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 197 ----------TEFTIPST-----VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp ----------SEEECCTT-----CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred ----------cccccccc-----eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence 11111100 00111122333567888888654 44556677888899999999776 665677788
Q ss_pred cCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCc
Q 044353 248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ 327 (596)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 327 (596)
.++.+|+.+.+..+ +..+...+|.++.+|+.+.+.++.+. .++...|..+.+|+.+.+..+ ++.+-..+|.++.+|+
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 88999999998654 55577788999999999999888886 777888878899999999754 5545567889999999
Q ss_pred EEeCCCCcCcccCCcccccccc
Q 044353 328 ILDVAYNSLSGTIPRCINNFSA 349 (596)
Q Consensus 328 ~L~l~~n~l~~~~~~~~~~l~~ 349 (596)
.+.+..+ ++..-..+|.++..
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTSSC
T ss_pred EEEECCc-cCEEchhHhhCCCC
Confidence 9988654 55455667776654
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=1.9e-13 Score=137.36 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=106.9
Q ss_pred CCCCCEEECcCCcCccccChhhhhc-----CCCCcEEEccCCeeeeEeCCCC-CCCCCccEEEccCCCCCCCcchhh---
Q 044353 44 IANLEYLDLSNNKLNGTVSEIHFLN-----LTQLLVFRAHGNSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPLWL--- 114 (596)
Q Consensus 44 l~~L~~L~Ls~n~i~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l--- 114 (596)
+++|++|+|++|.++ ......+.. ..+|++|+|++|.+.......+ ..+.+|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 356777777777765 222112222 2577777777776653322222 234567788888887765444443
Q ss_pred --cCCCCCcEEEcccCcCcccCChhHH---hcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCcccc
Q 044353 115 --QSQKKLYYLDISSTRISAKIPRGFW---NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG 189 (596)
Q Consensus 115 --~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~ 189 (596)
...++|+.|++++|.+++.....+. ...++|++|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~------------------------------- 198 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE------------------------------- 198 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH-------------------------------
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH-------------------------------
Confidence 2467788888888887653333332 3356777777777776421
Q ss_pred ccccccccCCCCCCCccEEeCcCCcCCCCC----CcccCCCCCCcEEEcccccccccCCccCcCC---C--CCcEEE--c
Q 044353 190 SIFHLICQGENFSKNIEFLKLSKNHFSEDI----PDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL---N--SLMSLN--L 258 (596)
Q Consensus 190 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--L 258 (596)
....++..+..+++|++|++++|.+++.. +..+...++|++|++++|.++......+..+ . .|+.+. +
T Consensus 199 -g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 199 -GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp -HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC
T ss_pred -HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhh
Confidence 11222333344567888888888886432 2334456788888888888874433333222 2 266666 6
Q ss_pred cCCccc
Q 044353 259 RNNRLS 264 (596)
Q Consensus 259 ~~n~l~ 264 (596)
..+.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 666655
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=5.1e-11 Score=119.21 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=94.1
Q ss_pred cEEEccCC-cccccCCccccCcccCCeeeccC-ccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353 395 RSIDISKN-NFSGEIPVEVTNLQGLQSLNLSH-NLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472 (596)
Q Consensus 395 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 472 (596)
..++.+++ .++ .+|. +..+++|++|+|++ |++++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 888 5788 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred cccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353 473 NNNLNGEIPSSTQLQSFGASSFAGND-LCGAP 503 (596)
Q Consensus 473 ~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~ 503 (596)
+|++++..+.......++.+.+.+|+ .|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999776665544458899999999 67654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=9.6e-10 Score=109.37 Aligned_cols=83 Identities=13% Similarity=0.277 Sum_probs=50.0
Q ss_pred cccccEEEccCCcccccCCccc---cCcccCCeeeccCccCccc----CCccccCCCCCCEEECCCCcCcccCCccccC-
Q 044353 391 LNLVRSIDISKNNFSGEIPVEV---TNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQIPQSMSN- 462 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~- 462 (596)
+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 5567777777777654332222 2467788888887777653 2333455677888888888776443333332
Q ss_pred CCCCCEEeccccc
Q 044353 463 LSFLNYLNLSNNN 475 (596)
Q Consensus 463 l~~L~~L~ls~N~ 475 (596)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.5e-09 Score=107.93 Aligned_cols=181 Identities=19% Similarity=0.225 Sum_probs=104.1
Q ss_pred CCCCCcEEEccccccc---------ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhh
Q 044353 225 NWPRLRMLNLGNNNFT---------GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWI 295 (596)
Q Consensus 225 ~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 295 (596)
.+++|+.|.+...... +.+...+..+|+|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 4556666666443211 112233455677777777766311 1222 3 26777777777766643222222
Q ss_pred h-hhcccccEEEccC--CcCcCc-----CCccc--CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc
Q 044353 296 G-ETFSRLMILNLRS--NKFHGD-----FPIQL--CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA 365 (596)
Q Consensus 296 ~-~~l~~L~~L~L~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 365 (596)
. ..+++|+.|+|+. +...+. +...+ ..+++|+.|++.+|.+.+..+..+...+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~----------------- 276 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD----------------- 276 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-----------------
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-----------------
Confidence 2 1467777777753 111111 11122 2478899999988887643332222111
Q ss_pred CCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc----CCccccCcccCCeeeccCccCcccCCccccC-CC
Q 044353 366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-MR 440 (596)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~ 440 (596)
.+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus 277 ------------------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 277 ------------------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp ------------------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred ------------------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 256789999999988763 3334456789999999999887554444443 2
Q ss_pred CCCEEECCCCc
Q 044353 441 SIESLDFSANQ 451 (596)
Q Consensus 441 ~L~~L~Ls~N~ 451 (596)
...+++++++
T Consensus 332 -g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -PMKIDVSDSQ 341 (362)
T ss_dssp -CSEEECCSBC
T ss_pred -CCEEEecCCc
Confidence 3568888887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=2.3e-08 Score=89.63 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=37.0
Q ss_pred ccccCCCCCCEEECcCC-ccccc----CCccCcCCCCCCEEECcCCcCccc----cChhhhhcCCCCcEEEccCCeee
Q 044353 15 NQLGRFKTLRALDLSNN-TVNGP----IPLSLGQIANLEYLDLSNNKLNGT----VSEIHFLNLTQLLVFRAHGNSLV 83 (596)
Q Consensus 15 ~~l~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~ 83 (596)
..+...+.|++|+|++| .+.+. +...+...++|++|+|++|.|.+. +.. .+...+.|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCC
Confidence 34556666777777666 66532 233445566666666666666421 111 3344455666666555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=6.4e-07 Score=84.33 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=27.9
Q ss_pred cccccEEEccCCcccc--cCCccccCcccCCeeeccCccCcccCCccccCCC--CCCEEECCCCcCcc
Q 044353 391 LNLVRSIDISKNNFSG--EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR--SIESLDFSANQLSG 454 (596)
Q Consensus 391 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~ 454 (596)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555555543 2233344455555555555555432 1122222 45555555555443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.8e-07 Score=83.83 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=40.2
Q ss_pred CCCCCcEEEccCCcccccC----ChhhcCCCCCCEEEccCCcccccCchhhhh---hcccccEEEc--cCCcCcCc----
Q 044353 249 ALNSLMSLNLRNNRLSGII----PTSFRNLSILKALDMGENELVGNIPTWIGE---TFSRLMILNL--RSNKFHGD---- 315 (596)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~l~~L~~L~L--~~n~l~~~---- 315 (596)
..++|++|+|++|.+.... ...+...++|++|+|++|.+.+.....+.. ..++|++|++ ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 3344444444444444221 222333445555555555554222111111 2334555555 44555422
Q ss_pred CCcccCCCCCCcEEeCCCCcCc
Q 044353 316 FPIQLCRLGSLQILDVAYNSLS 337 (596)
Q Consensus 316 ~~~~~~~l~~L~~L~l~~n~l~ 337 (596)
+...+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2233444566777777777654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.6e-07 Score=88.36 Aligned_cols=106 Identities=25% Similarity=0.198 Sum_probs=63.3
Q ss_pred ccCCCCCCE--EECcCCccc---ccCCccCcCCCCCCEEECcCCcCcc--ccChhhhhcCCCCcEEEccCCeeeeEe-CC
Q 044353 17 LGRFKTLRA--LDLSNNTVN---GPIPLSLGQIANLEYLDLSNNKLNG--TVSEIHFLNLTQLLVFRAHGNSLVFKI-NP 88 (596)
Q Consensus 17 l~~l~~L~~--L~ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 88 (596)
+...+.|.. ++++.|... ..++....++++|++|+|++|+|++ .++. .+..+++|++|+|++|.+.+.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhh
Confidence 444445554 556666332 1112222456777777777777763 2333 5567777777777777776431 11
Q ss_pred CCCCCCCccEEEccCCCCCCCcc-------hhhcCCCCCcEEE
Q 044353 89 NWVPPFQLAFLELRSCHLGPRFP-------LWLQSQKKLYYLD 124 (596)
Q Consensus 89 ~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~l~~L~~L~ 124 (596)
.+..+ +|+.|+|.+|.+.+..+ ..+..+++|+.||
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 22233 78888888888765443 3467789998886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=4.8e-07 Score=78.85 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=70.6
Q ss_pred ccccEEEccCCcccccCCccccCcccCCeeeccCcc-CcccCCccccCC----CCCCEEECCCCc-CcccCCccccCCCC
Q 044353 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM----RSIESLDFSANQ-LSGQIPQSMSNLSF 465 (596)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 465 (596)
..|+.||+++|.++..-...+.++++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999987777778899999999999995 776655666664 479999999985 88655567788999
Q ss_pred CCEEecccccC
Q 044353 466 LNYLNLSNNNL 476 (596)
Q Consensus 466 L~~L~ls~N~l 476 (596)
|++|++++++-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.3e-06 Score=74.52 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=49.2
Q ss_pred CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe-eeeEeCCCCCCC----CCccEEEccCCC-CCCCcchhhcCCC
Q 044353 45 ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINPNWVPP----FQLAFLELRSCH-LGPRFPLWLQSQK 118 (596)
Q Consensus 45 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~ 118 (596)
.+|++||++++.|++. .-..+.++++|++|+|++|. ++......+..+ ++|++|++++|. ++...-..+++++
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3456666666555422 11244555666666666653 333222233332 357777777764 6655566677788
Q ss_pred CCcEEEcccCc-Cc
Q 044353 119 KLYYLDISSTR-IS 131 (596)
Q Consensus 119 ~L~~L~l~~n~-i~ 131 (596)
+|+.|+++++. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 88888888874 54
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=9.7e-05 Score=61.30 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=48.4
Q ss_pred eeeccCccCc-ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353 420 SLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482 (596)
Q Consensus 420 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 482 (596)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5677777775 34555432 5789999999999977778889999999999999999988764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=0.00014 Score=64.62 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=29.4
Q ss_pred cCCCCCCEEECcCC-ccccc----CCccCcCCCCCCEEECcCCcCccccC---hhhhhcCCCCcEEEccCCee
Q 044353 18 GRFKTLRALDLSNN-TVNGP----IPLSLGQIANLEYLDLSNNKLNGTVS---EIHFLNLTQLLVFRAHGNSL 82 (596)
Q Consensus 18 ~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l 82 (596)
.+-+.|++|+|++| .|.+. +.+++..-+.|+.|+|++|+|.+.-. ...+..-+.|++|+|+.|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34455555555553 44421 23334444555555555555541110 01233344455555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00035 Score=61.97 Aligned_cols=115 Identities=9% Similarity=0.055 Sum_probs=77.9
Q ss_pred cCcCCCCCCEEECcCC-cCccc----cChhhhhcCCCCcEEEccCCeeeeEeCCCCC----CCCCccEEEccCCCCCCCc
Q 044353 40 SLGQIANLEYLDLSNN-KLNGT----VSEIHFLNLTQLLVFRAHGNSLVFKINPNWV----PPFQLAFLELRSCHLGPRF 110 (596)
Q Consensus 40 ~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~ 110 (596)
.+.+-+.|++|+|++| +|.+. +- .++..-..|+.|+|++|.+......++. .-+.|++|+|++|.|....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 3456688999999986 77521 22 2566778899999999998755544443 4568999999999987543
Q ss_pred ----chhhcCCCCCcEEEcccC---cCcccCChhHH---hcCCCCcEEEcccccc
Q 044353 111 ----PLWLQSQKKLYYLDISST---RISAKIPRGFW---NSIFQYDYLNVSGNQI 155 (596)
Q Consensus 111 ----~~~l~~l~~L~~L~l~~n---~i~~~~~~~~~---~~l~~L~~L~l~~n~l 155 (596)
...+..-+.|+.|+|+++ .+.......+. ..-+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344566678999999865 34433222222 2336788888876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0047 Score=51.01 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=47.3
Q ss_pred cEEEccCCccc-ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353 395 RSIDISKNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453 (596)
Q Consensus 395 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 453 (596)
..++.+++.++ ..+|..+ .++|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888898886 3566543 257999999999999777788999999999999999876
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.97 E-value=0.2 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=13.4
Q ss_pred eeehhhhHHHHHHHHHHhhhhhhccchh
Q 044353 535 LYISMALGFVVGFWCFIGPLLIKRRWRY 562 (596)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (596)
+..+++.|++++++++.+.++|.+|++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 3344444455544555554555555443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.96 E-value=0.18 Score=31.74 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=12.8
Q ss_pred ehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353 537 ISMALGFVVGFWCFIGPLLIKRRWRYK 563 (596)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (596)
.+++.|++++++++.+.++|.+|++++
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333444444444454445555554443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=85.44 E-value=0.28 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=14.0
Q ss_pred eeehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353 535 LYISMALGFVVGFWCFIGPLLIKRRWRYK 563 (596)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (596)
.+++.++|+++.+++.+++++|.||++++
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 34555555444444444445555554443
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=84.88 E-value=0.52 Score=28.74 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=16.5
Q ss_pred cceeeehhhhHHHHHHHHHHhhhhhhcc
Q 044353 532 DWLLYISMALGFVVGFWCFIGPLLIKRR 559 (596)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (596)
....+++++++.++++.+++++.++.+|
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 3456677777777666555555444433
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.85 E-value=2 Score=33.01 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred cccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353 32 TVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79 (596)
Q Consensus 32 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 79 (596)
.++.+-..+|.+|.+|+.+.|..+ ++ .+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 444455566667777777777655 33 55555677777776666654
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.81 E-value=6.4 Score=30.13 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=32.2
Q ss_pred cCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262 (596)
Q Consensus 214 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 262 (596)
.++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 445555667777777777777654 454666677777777777776543
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=69.95 E-value=2.3 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=16.5
Q ss_pred ehhhhHHHHHHHHHHhhhhhhccchh
Q 044353 537 ISMALGFVVGFWCFIGPLLIKRRWRY 562 (596)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (596)
..+++|+++++.+..+.++|++.+|.
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEccccc
Confidence 34566666666666667777766543
No 172
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=57.83 E-value=3.1 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.173 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHhhhhhhcc
Q 044353 540 ALGFVVGFWCFIGPLLIKRR 559 (596)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~ 559 (596)
++|+++.+++..++.+|.||
T Consensus 14 Vvglll~vii~l~~~~~iRR 33 (35)
T 1iij_A 14 VVGVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHhheEEee
Confidence 34433333333333444444
No 173
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=47.95 E-value=5.4 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.4
Q ss_pred hhhhhccchhhh
Q 044353 553 PLLIKRRWRYKY 564 (596)
Q Consensus 553 ~~~~~~~~~~~~ 564 (596)
++++.|+++.||
T Consensus 27 iLi~~w~qKPrY 38 (39)
T 2l6w_A 27 ILIMLWQKKPRY 38 (39)
Confidence 344444444443
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=36.36 E-value=19 Score=21.00 Aligned_cols=24 Identities=8% Similarity=-0.070 Sum_probs=12.9
Q ss_pred eeeehhhhHHHHHHHHHHhhhhhh
Q 044353 534 LLYISMALGFVVGFWCFIGPLLIK 557 (596)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~ 557 (596)
..+.+++++-+++.+.+...++++
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhe
Confidence 445566666655555444444443
No 175
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=33.22 E-value=14 Score=25.16 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHhh
Q 044353 539 MALGFVVGFWCFIGP 553 (596)
Q Consensus 539 ~~~~~~~~~~~~~~~ 553 (596)
+++|.++++++.+++
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444444
No 176
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=27.36 E-value=19 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.4
Q ss_pred eehhh-hHHHHHHHHHHhhhhhhc
Q 044353 536 YISMA-LGFVVGFWCFIGPLLIKR 558 (596)
Q Consensus 536 ~~~~~-~~~~~~~~~~~~~~~~~~ 558 (596)
++++. +|+.+..++|+++++.++
T Consensus 19 ~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 19 IIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 33333 344444455555554443
No 177
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=20.37 E-value=51 Score=19.64 Aligned_cols=6 Identities=0% Similarity=0.041 Sum_probs=2.2
Q ss_pred HHhhhh
Q 044353 550 FIGPLL 555 (596)
Q Consensus 550 ~~~~~~ 555 (596)
++.+++
T Consensus 21 VWtiv~ 26 (36)
T 1pi7_A 21 VWSIVI 26 (36)
T ss_pred HHHHHH
Confidence 333333
Done!