BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044354
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG------RSCTV 211
E C IC+EI EP T C H+ CK C +S +K CP CR+ +S+ R+ V
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74
Query: 212 NTVLWNTIQLLFPQEVEARKAA 233
N LW IQ +P+E + R +
Sbjct: 75 NVELWTIIQKHYPRECKLRASG 96
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD-KCG-KKCPKC 199
++KL+EE+ C ICL+I +P T CGH+FC KC+ + CG KCP C
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD-KCG-KKCPKCR 200
++KL+EE+ C ICL+I +P T CGH+FC KC+ + CG KCP C+
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ KL + C C E+ ++P TT C H+ CK CL+ + CP CR +
Sbjct: 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 131
Query: 212 NTVLWNTIQLLFPQEVEAR 230
N +L + L FP + R
Sbjct: 132 NEILQTLLDLFFPGYSKGR 150
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ K+ E C C E+ F P TT C H+ CK CL + CP CR + + V
Sbjct: 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 106 NQPLQTVLNQLFP 118
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCL----RSAADKCGK-KCPKCR 200
++ ++EE++C ICLE+ EP + C HSFC+ C+ S + GK CP CR
Sbjct: 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK CP CR
Sbjct: 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201
GSS SS T E CAICL+ C P + C H FC C++ A+ GK+C CRQ
Sbjct: 1 GSSGSSGNTAPSLTVPE--CAICLQTCVHPVSLPCKHVFCYLCVKGAS-WLGKRCALCRQ 57
Query: 202 LI 203
I
Sbjct: 58 EI 59
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 112 GKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEP 171
KNK +L + K+ KE+ +E+ ND L EL C IC E E
Sbjct: 20 AKNK-ELEQTKEEKEKMQAQKEEVLSHMNDV------------LENELQCIICSEYFIEA 66
Query: 172 STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTI 219
T C HSFC C+ + +CP CR+ I +S T + VL N I
Sbjct: 67 VTLNCAHSFCSYCINEWMKR-KIECPICRKDI---KSKTYSLVLDNXI 110
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 112 GKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEP 171
KNK +L + K+ KE+ +E+ ND L EL C IC E E
Sbjct: 31 AKNK-ELEQTKEEKEKMQAQKEEVLSHMNDV------------LENELQCIICSEYFIEA 77
Query: 172 STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTI 219
T C HSFC C+ + +CP CR+ I +S T + VL N I
Sbjct: 78 VTLNCAHSFCSYCINEWMKR-KIECPICRKDI---KSKTYSLVLDNCI 121
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 112 GKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEP 171
KNK +L + K+ KE+ +E+ ND L EL C IC E E
Sbjct: 20 AKNK-ELEQTKEEKEKMQAQKEEVLSHMNDV------------LENELQCIICSEYFIEA 66
Query: 172 STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTI 219
T C HSFC C+ + +CP CR+ I +S T + VL N I
Sbjct: 67 VTLNCAHSFCSYCINEWMKR-KIECPICRKDI---KSKTYSLVLDNCI 110
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 155 LREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNT 213
L EL C ICL++ TT C H FC C+ +A K+CP CR+ + + RS +
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 110
Query: 214 VLWNTIQLLFPQEVEARKAAAALNSREAEHQSPQRGFHN 252
I ++P E + +R +H + Q H+
Sbjct: 111 NFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHS 149
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
+ +SC IC I +P T+C H FC+ C+ G CP CR
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCL----RSAADKCGKK-- 195
GSS SS ++EE++C ICLE+ EP + CGHS C+ C+ + A G K
Sbjct: 1 GSSGSS-----GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSS 55
Query: 196 CPKC 199
CP C
Sbjct: 56 CPVC 59
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
L + C ICL E T CGH FCK C+ + G KCP
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 155 LREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRS 208
L EL C ICL++ TT C H FC C+ +A K+CP CR+ + + RS
Sbjct: 50 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 104
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
L + C ICL E T CGH FCK C+ + G KCP
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 159 LSCAICLEICFEPS-------TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207
+SC IC++ E +T CGH FC +CLR + K CP CR+ I++ R
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKR 58
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD--KCGKKCPKCRQLIS 204
I+ +++ L C ICLE+ EP +T C H FCK C+ + K +CP C+ I+
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 159 LSCAICLEICFEPS-------TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207
+SC IC++ E +T CGH FC +CLR + K CP CR+ I++ R
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKR 62
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 159 LSCAICLEICFEPS-------TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207
+SC IC++ E +T CGH FC +CLR + K CP CR+ I++ R
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKR 127
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 159 LSCAICLEICFEPS-------TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207
+SC IC++ E +T CGH FC +CLR + K CP CR+ I++ R
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKR 65
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 155 LREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRS 208
L EL C ICL++ TT C H FC C+ +A K+CP CR+ + + RS
Sbjct: 31 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 85
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCL 185
GSS SS ++ L+ E SC++CLE EP CGH+FCK C+
Sbjct: 1 GSSGSSGA--LENLQVEASCSVCLEYLKEPVIIECGHNFCKACI 42
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 152 IDKLREELSCAICLEICFE----PSTTTCGHSFCKKCLRS--AADKCGKKCPKCRQL 202
+D LRE L C IC+E E P CGH+ C++CL A+ G +CP C ++
Sbjct: 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
L + C ICL E T CGH FCK C+ + G KCP
Sbjct: 22 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201
GSS SS + + ++ C C + P T CGH FC+ C+ + KC C++
Sbjct: 1 GSSGSSGF--VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQE 58
Query: 202 LI 203
I
Sbjct: 59 SI 60
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 159 LSCAICLEICFEPS-------TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205
+SC IC++ E +T CGH FC +CLR + K CP CR+ I++
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINH 68
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 152 IDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKC-------RQLI 203
I +L L C +C + +T C HSFCK C+ + K CP C R L+
Sbjct: 5 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLL 63
Query: 204 SNGRSCTVNTVLWNTIQLLFPQEVEARK 231
+ T+ +++ + LF E++ R+
Sbjct: 64 NIRSDKTLQDIVYKLVPGLFKNEMKRRR 91
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
L + C ICL E T CGH FCK C+ + G KCP
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 152 IDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKC-------RQLI 203
I +L L C +C + +T C HSFCK C+ + K CP C R L+
Sbjct: 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLL 67
Query: 204 SNGRSCTVNTVLWNTIQLLFPQEVEARK 231
+ T+ +++ + LF E++ R+
Sbjct: 68 NIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 152 IDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKC-------RQLI 203
I +L L C +C + +T C HSFCK C+ + K CP C R L+
Sbjct: 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLL 67
Query: 204 SNGRSCTVNTVLWNTIQLLFPQEVEARK 231
+ T+ +++ + LF E++ R+
Sbjct: 68 NIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGK-KCPKC 199
GSS SS D + +EL C IC +I + CG+S+C +C+R+A + + CP C
Sbjct: 1 GSSGSSGED--DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
Query: 200 RQ 201
Q
Sbjct: 59 HQ 60
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 153 DKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGK-KCPKCRQ 201
D + +EL C IC +I + CG+S+C +C+R+A + + CP C Q
Sbjct: 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.074, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL + + G+ CP CR
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL S + G+ CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
C IC E + CGH C CL + + G+ CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLI 203
+ +L + C+IC + +T T C H+FCK C+ +CPKC ++
Sbjct: 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVV 60
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 142 GSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
GSS SS + +L +E C IC++ C HSFC+KC+ +D+ + CP CR
Sbjct: 1 GSSGSSGR--VKQLTDEEECCICMDG-RADLILPCAHSFCQKCIDKWSDR-HRNCPICR 55
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 155 LREELSCAIC---LEICFEPSTTTCGHSFCKKC 184
R+ LSC +C L+ P+ +TC H CK C
Sbjct: 38 FRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTC 70
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 154 KLREELSCAICLEICFEPSTTTCGHSF-CKKCLRSAADKCGKKCPKCRQLIS 204
+L+EE C IC++ CGH CK+C + KCP C +I+
Sbjct: 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 67
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 154 KLREELSCAICLEICFEPSTTTCGHSF-CKKCLRSAADKCGKKCPKCRQLIS 204
+L+EE C IC++ CGH CK+C + KCP C +I+
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 154 KLREELSCAICLEICFEPSTTTCGHSF-CKKCLRSAADKCGKKCPKCRQLIS 204
+L+EE C IC++ CGH CK+C + KCP C +I+
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 137 EPSNDGSSSSSVLTCIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKK 195
EP G+ + S +D+L + L C+ C I EP C H FC C+ +D G
Sbjct: 2 EPDGRGAWAHSRAA-LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCV---SDCIGTG 57
Query: 196 CPKC 199
CP C
Sbjct: 58 CPVC 61
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLW 216
E C I LE+ +P + G ++ + ++ D K CPK ++ + + T N VL
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA-GLTPNYVLK 65
Query: 217 NTIQL 221
+ I L
Sbjct: 66 SLIAL 70
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 176 CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTV-LWNTIQLLFPQEVEARKAAA 234
C H FC C K K CP C + CT ++ + + +Q + R A
Sbjct: 20 CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQA 79
Query: 235 ALNSREAEHQSP 246
+N R P
Sbjct: 80 HINHRHMRAGKP 91
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 159 LSCAICLE------ICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201
+ C +C+E I F P T CG+ C+ C CP CR+
Sbjct: 1 VECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRTDENGLCPACRK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,852,529
Number of Sequences: 62578
Number of extensions: 343503
Number of successful extensions: 560
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 64
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)