BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044354
(426 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTV 214
L E+L+CAICL + +P T CGH+FC C+R D+CGK CP+CR+ +G N
Sbjct: 6 LEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAELRRNVA 65
Query: 215 LWNTIQLL 222
L ++++
Sbjct: 66 LSGVLEVV 73
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG---RSCT---V 211
E C IC+EI FEP T C H+ CK C S +K CP CR+ +S+ RS T V
Sbjct: 13 ECQCQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLV 72
Query: 212 NTVLWNTIQLLFPQEVEARKAA 233
N LW IQ +P+E + R +
Sbjct: 73 NMELWEIIQKHYPKECKLRASG 94
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG------RSCTV 211
E C IC+EI EP T C H+ CK C +S +K CP CR+ +S+ R+ V
Sbjct: 13 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 72
Query: 212 NTVLWNTIQLLFPQEVEARKAA 233
N LW IQ +P+E + R +
Sbjct: 73 NVELWTIIQKHYPRECKLRASG 94
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS-----NGRSCT 210
R + C +CLEI EP T C H+FCK C DK CP CR+ +S N R+ T
Sbjct: 21 RSDCVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARLNSRNKT 80
Query: 211 -VNTVLWNTIQLLFPQEVEAR 230
VN LW IQ FP + E R
Sbjct: 81 LVNMELWRRIQDAFPSQCERR 101
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG------RSCTV 211
E C IC+EI EP T C H+ C C +S +K CP CR+ +S+ R+ V
Sbjct: 13 ECQCGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLV 72
Query: 212 NTVLWNTIQLLFPQEVEAR 230
NT LW IQ + +E + R
Sbjct: 73 NTDLWEIIQKHYAKECKLR 91
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG------RSCTV 211
E C IC+EI EP T C H+ C C +S +K CP CR+ +S+ R+ V
Sbjct: 13 ECQCGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLV 72
Query: 212 NTVLWNTIQLLFPQEVEAR 230
NT LW IQ + +E + R
Sbjct: 73 NTDLWEIIQKHYAKECKLR 91
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 109 QESGKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEIC 168
QE +N+ Q+ ++ T+ V + S+ L D +L C++C+ +
Sbjct: 411 QEKKRNRCQIETQEDTELPNKVSKQDFPAEQGAKPDLSNPLGSFDA--SDLECSLCMRLF 468
Query: 169 FEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN---GRSCTVNTVLWNTIQLLFPQ 225
+EP TT CGH+FC KCL D KCP C+ ++ R + N +L I P+
Sbjct: 469 YEPVTTPCGHTFCLKCLERCLDH-NAKCPLCKDVLLQCLPSRKYSKNVILEELIATFLPE 527
Query: 226 EVEARK 231
E + RK
Sbjct: 528 EFKERK 533
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 159 LSCAICLEICFEPSTTTCGHSFCKKCL---RSAADKCGKKCPKCRQLI-SNGRS------ 208
C C +P + CGH+FCK CL R+A +C K L+ ++GR+
Sbjct: 157 FKCKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMAASGRARGPRRA 216
Query: 209 -------CTVNTVLWNTIQLLFPQEVEARKAAAALNSREAEHQ 244
VN VL + LFP A + N EHQ
Sbjct: 217 GQPAPLQLRVNVVLSGLLGKLFPGPARASQLRHEGNRLFREHQ 259
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 138 PSNDGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
P++ G + L +L CA+C+ + +EP TT CGH+FC KCL D KCP
Sbjct: 403 PTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDH-NAKCP 461
Query: 198 KCRQLISN---GRSCTVNTVLWNTIQLLFPQEVEARK 231
C+ +S R + N ++ I P+E++ R+
Sbjct: 462 LCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERR 498
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 159 LSCAICLEICFEPSTTTCGHSFCKKCLR--SAADK----CGKKCPKCRQLISNGRS---- 208
C C +P + +CGH+FCK CL AAD+ CG K +++ GR+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSA--LMVATGRARGSR 213
Query: 209 ---------CTVNTVLWNTIQLLFP 224
VN VL + LFP
Sbjct: 214 RAGQQPPPPLRVNVVLSGLLGKLFP 238
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 138 PSNDGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCP 197
P++ G + L +L CA+C+ + +EP TT CGH+FC KCL D KCP
Sbjct: 444 PTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDH-NAKCP 502
Query: 198 KCRQLISN---GRSCTVNTVLWNTIQLLFPQEVEARK 231
C+ +S R + N ++ I P+E++ R+
Sbjct: 503 LCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERR 539
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 117 QLNEEKKTKEEKSVGGDELT-EPSNDGSSSSSVLTCIDK----------LREELSCAICL 165
QL + + EK G+ L P ++GS++S + + + + C C
Sbjct: 103 QLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEETGAAAAAAATEVWDGFKCRKCH 162
Query: 166 EICFEPSTTTCGHSFCKKCLR--SAADK----CGKK 195
+P + +CGH+FCK CL AAD+ CG K
Sbjct: 163 GFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVK 198
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201
++K+ EE++C+ICL+ EP + CGH FCK+C+ G CP+CRQ
Sbjct: 11 LEKMWEEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQ 60
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 141 DGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD-KCGKKCPKC 199
D S ++S L EEL+C +C+E+ +P CGH+FC+ C+ A + + CP+C
Sbjct: 125 DASKNASSLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPEC 184
Query: 200 RQLISNGRSCTVNTVLWN 217
R+ I++ R T+N VL N
Sbjct: 185 RESITD-RKYTINRVLAN 201
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS-----NGRSCT 210
R E C IC EI EP T C H+ C C + +K CP CR+ +S + R+ T
Sbjct: 11 RSECICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARLHSRTRT 70
Query: 211 -VNTVLWNTIQLLFPQEVEARKAA 233
VNT LW IQ +P+E + R +
Sbjct: 71 LVNTELWERIQKQYPKECQRRASG 94
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKC----RQLISNGRSCTVNT 213
+ C++C+ + FEP TT CGHSFCK CL D CP C ++ +++ R C V
Sbjct: 476 DFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDH-APYCPLCKESLKEYLADRRYC-VTQ 533
Query: 214 VLWNTIQLLFPQEVEARKAAAALNSREAEH 243
+L I P E+ RK + E H
Sbjct: 534 LLEELIVKYLPDELSERKKIYDEETAELSH 563
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 77 PSNSRRKRRLQKRSPVSIPIAVLDLDEGESSGQESGKNKVQLNEEKKTKEEKS-VGGDEL 135
P+ +RKR+ Q E +SS + K+++ K +KE+K+ + DEL
Sbjct: 632 PTKGKRKRKSQSM-------------EEKSSPTKGTPKKMKVEAYKLSKEQKALIKDDEL 678
Query: 136 TEPSNDGSSSSSVLT--CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCG 193
+ D + S L ++K+ E C C E+ ++P TT C H+ C++CL+ +
Sbjct: 679 NKKLWDEAMESLSLGPRFVNKVEEVFLCICCQEVVYQPITTECQHNVCRECLQRSFKAKV 738
Query: 194 KKCPKCRQLISNGRSCTVNTVLWNTIQLLFP 224
CP CR + VN L + LFP
Sbjct: 739 YTCPACRHDLGKNYQMAVNKPLQAILTQLFP 769
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRS--AADKCGKKCPKCRQLISNGRSCTVN 212
L EELSC+ICLE EP TT CGH+FC CL A CP+CR + N
Sbjct: 7 LAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQARPQLHKN 66
Query: 213 TVLWNTIQ 220
TVL N ++
Sbjct: 67 TVLCNVVE 74
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ K+ E C C E+ +EP TT C H+ CK CL + CP CR + S V
Sbjct: 697 LSKVEETFLCICCQEVVYEPITTECHHNICKGCLDRSFKALVHNCPACRHDLGKNYSLNV 756
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 757 NKPLQAILSQLFP 769
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCG--KKCPKCRQLISNGRSC 209
++ L EELSC++CLE+ EP TT CGH+FC CL G +CP+CR++
Sbjct: 4 LNPLAEELSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVRPQL 63
Query: 210 TVNTVLWNTIQLLFPQEVEAR 230
NTV+ ++ F Q +AR
Sbjct: 64 QKNTVMCAVVE-QFLQAEQAR 83
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 141 DGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD-KCGKKCPKC 199
D S +++ L EEL+C +C+E+ +P CGH+FC+ C+ + + CP+C
Sbjct: 126 DASKTAASLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPEC 185
Query: 200 RQLISNGRSCTVNTVLWN 217
++ I++ R T+N VL N
Sbjct: 186 KESITD-RKYTINRVLAN 202
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 112 GKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEP 171
KNK +L E K+ KE+ +E+ ND L EL C IC E E
Sbjct: 346 AKNK-ELQETKEEKEKVFAQKEEVLNHMND------------VLDNELQCIICSEHFIEA 392
Query: 172 STTTCGHSFCKKCLRSAADKCGKKCPKCRQ-LISNGRSCTVNTVLWNTIQLLFPQEVEAR 230
T C HSFC C++S + ++CP CRQ +++ RS ++ + + + L P E++ R
Sbjct: 393 VTLNCAHSFCSYCIKSWKKR-KEECPICRQEIVTETRSLVLDNCIDSMVDKLSP-EMKNR 450
Query: 231 KAAAALNSRE---AEHQSP 246
+AA L +E AE +P
Sbjct: 451 RAALILERKEMVQAEESNP 469
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD-KCG-KKCPKCRQLISNGRSC 209
++KL+EE+ C ICL+I +P T CGH+FC KC+ + CG KCP C+ + +
Sbjct: 7 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN-AI 65
Query: 210 TVNTVLWNT---IQLLFPQEVEARKAAA 234
N++L N IQ L EV++++ A
Sbjct: 66 RFNSLLRNLVEKIQALQASEVQSKRKEA 93
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN---GRSCTVNTV 214
+ CA+C+ + FEP TT CGH+FC KCL D CP C+ +S R+ + +
Sbjct: 446 DFECALCMRLLFEPVTTPCGHTFCLKCLERCLDH-APHCPLCKDKLSELLASRNFNITVL 504
Query: 215 LWNTIQLLFPQEVEARK 231
I P E+ RK
Sbjct: 505 AEELIFRYLPDELSDRK 521
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVL 215
R+ L C C + +P T CG + CK+C+ G P+ R+ VN VL
Sbjct: 138 RDLLGCPRCRRLLHKPVTLPCGLTVCKRCVEP-----GPARPQVRR---------VNVVL 183
Query: 216 WNTIQLLFPQEVEARKAAAALNSREAEHQ 244
++ FP E R+ A S + + Q
Sbjct: 184 SGLLEKCFPAECRLRRLAGQARSLQRQQQ 212
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ--LISNGR 207
+ + EE++C ICL+ EP + CGHSFC++C+ G CP CRQ L+ N R
Sbjct: 7 LTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLR 64
>sp|B6CHA3|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2
SV=1
Length = 772
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
++K+ E C C E+ +EP TT C H+ CK CL + CP CR + V
Sbjct: 694 VNKVEETFLCICCQEVVYEPVTTECHHNICKGCLDRSFKALVHSCPACRHDLGKNYPLNV 753
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 754 NKPLQAILSQLFP 766
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ--LISNGR 207
+ + EE++C+ICL+ EP + CGHSFC++C+ + G CP CR+ L+ N R
Sbjct: 7 LTMMWEEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLR 64
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 112 GKNKVQLNEEKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEP 171
KNK +L E K+ KE+ +E+ ND L EL C IC E E
Sbjct: 341 AKNK-ELQETKEEKEKVCAQKEEVLNHMND------------VLDNELQCIICSEHFIEA 387
Query: 172 STTTCGHSFCKKCLRSAADKCGKKCPKCRQ-LISNGRSCTVNTVLWNTIQLLFPQEVEAR 230
T C HSFC C++S + ++CP CRQ ++S RS ++ + + + L P E++ R
Sbjct: 388 VTLNCAHSFCSYCIKSWRKR-KEECPICRQEILSETRSLVLDNCIDSMVDKLSP-EMKNR 445
Query: 231 KAAAALNSRE---AEHQSP 246
+AA L +E AE +P
Sbjct: 446 RAALILERKEMVQAEESNP 464
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS-----NGRSCT-V 211
E C IC EI EP T C H+ C C + +K CP CR+ +S + R+ T V
Sbjct: 13 ECICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARQHSRTRTLV 72
Query: 212 NTVLWNTIQLLFPQEVEARKAA 233
N LW IQ +P++ + R +
Sbjct: 73 NKELWEVIQKQYPKQCQRRASG 94
>sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1
SV=1
Length = 803
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ KL + C C E+ ++P TT C H+ CK CL+ + CP CR + +
Sbjct: 725 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYVMVL 784
Query: 212 NTVLWNTIQLLFPQEVEAR 230
N L + L FP + R
Sbjct: 785 NETLQTLLDLFFPGYSKGR 803
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ K+ E C C E+ F P TT C H+ CK CL + CP CR + + TV
Sbjct: 708 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFKAQVFSCPACRYDLGRSYAMTV 767
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 768 NQPLQAVLSQLFP 780
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGK--KCPKCRQ 201
+ +L+++L C ICLE+ EP CGHS+CK CL S ++ +CP CRQ
Sbjct: 7 VPELQDQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQ 58
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 154 KLREE--LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG----R 207
+L EE ++C+ICL +P T CGHSFC C++ + C K CP+CRQ G R
Sbjct: 4 QLLEEDVVTCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPEGAKLSR 63
Query: 208 SCTVNTVLWNTIQLLFPQEVEARKAAAALNS-REAEHQSPQRGFHNNVRTRSM-RSSATS 265
+ ++T+L L P V R+ +A +S R H P F RT + SA +
Sbjct: 64 NVKMSTLLQALPVLPAPPAVTPRRDSATSHSARCLRHGRPLEFF---CRTEGLCVCSACT 120
Query: 266 SGDATTRRREI 276
D + R +
Sbjct: 121 VHDCSHHERAL 131
>sp|Q2YEM9|TRIM5_PONPY Tripartite motif-containing protein 5 OS=Pongo pygmaeus GN=TRIM5
PE=2 SV=1
Length = 493
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK + CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERSCPVCR 59
>sp|Q5C8T8|TRIM5_PONAB Tripartite motif-containing protein 5 OS=Pongo abelii GN=TRIM5 PE=2
SV=1
Length = 493
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK + CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERSCPVCR 59
>sp|Q96PU4|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1
SV=1
Length = 802
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ KL + C C E+ ++P TT C H+ CK CL+ + CP CR +
Sbjct: 724 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 783
Query: 212 NTVLWNTIQLLFPQEVEAR 230
N +L + L FP + R
Sbjct: 784 NEILQTLLDLFFPGYSKGR 802
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 157 EELSCAICLEICFEPSTTTCGHSFCKKCL-------RSAADKCGKKCPKCRQ 201
++LSC IC + +P+T CGHSFC +CL R A D C CP CR+
Sbjct: 17 DDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRK 68
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 143 SSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQL 202
+S S + K+ E C C E+ F P TT C H+ CK CL + CP CR
Sbjct: 706 ASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYD 765
Query: 203 ISNGRSCTVNTVLWNTIQLLFP 224
+ + VN L + LFP
Sbjct: 766 LGRSYAMQVNQPLQTVLNQLFP 787
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 145 SSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201
+ ++L K+++ L C IC E P TT CGH++C +CL + K K CP CRQ
Sbjct: 69 TKTLLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWL-KESKSCPTCRQ 124
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3
SV=1
Length = 493
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1
SV=1
Length = 493
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>sp|Q2T9Z0|TRI17_BOVIN E3 ubiquitin-protein ligase TRIM17 OS=Bos taurus GN=TRIM17 PE=2
SV=1
Length = 475
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
Query: 154 KLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKK-----------CPKCRQL 202
KL+EE +C+ICL+ +P TTCGH+FC++C++ +K + CP+CR+L
Sbjct: 9 KLQEEATCSICLDYFTDPVMTTCGHNFCRECIQLTWEKARGQKKRRKRKGSFPCPECREL 68
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADKCGKKCPKCR 200
++EE++C ICLE+ +P + CGHSFC+ CL +S DK CP CR
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKGESSCPVCR 59
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 132 GDELTE---PSNDGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSA 188
GDEL NDG+ + + K+ E L C+IC + F P T CGH++C CL +
Sbjct: 2 GDELHNRLLHQNDGTKDAILY----KIIESLVCSICHDYMFVPMMTPCGHNYCYGCLNTW 57
Query: 189 ADKCGKK---CPKCRQLISN--GRSCTVNTVLWNTIQLLFPQEVEARKAAAALNSRE--- 240
+K CP+CR I+ + T+ L ++ L Q E+ K ++E
Sbjct: 58 FASNTQKELACPQCRSDITTIPALNTTLQQYLSFILEKLRDQNDESFKKLLTTKTKEEND 117
Query: 241 AEHQSPQRGFHNNVRTRSMRSSATSSGDATTR 272
++ + + V S + A S D TR
Sbjct: 118 YKNDKEKDTLFDKVFKNSALAVADDSDDGITR 149
>sp|A0JN74|TRI11_BOVIN E3 ubiquitin-protein ligase TRIM11 OS=Bos taurus GN=TRIM11 PE=2
SV=1
Length = 468
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKCRQLI 203
L+EE +CAICL+ +P T CGH+FC++C+R + CP+CR+L
Sbjct: 10 LQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELF 60
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ K++E C C E+ F P TT C H+ CK CL + CP CR + + V
Sbjct: 696 LSKVKEAFQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRYDLDHSSPTRV 755
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 756 NQPLQTILNQLFP 768
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 157 EELSCAICLEICFEPSTTTCGHSFCKKCL-------RSAADKCGKKCPKCRQ 201
E+LSC IC + P+T CGHSFC +CL R+ D C CP CR+
Sbjct: 17 EDLSCIICQGLLDWPTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRK 68
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTV 211
+ K++E C C E+ F P TT C H+ CK CL + CP CR + + V
Sbjct: 704 LSKVKEAFQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRFELDHSSPTRV 763
Query: 212 NTVLWNTIQLLFP 224
N L + LFP
Sbjct: 764 NQPLQTILNQLFP 776
>sp|Q96F44|TRI11_HUMAN E3 ubiquitin-protein ligase TRIM11 OS=Homo sapiens GN=TRIM11 PE=1
SV=2
Length = 468
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKCRQL 202
L+EE +CAICL+ +P T CGH+FC++C+R + CP+CR+L
Sbjct: 10 LQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECREL 59
>sp|Q5PQN2|BFAR_RAT Bifunctional apoptosis regulator OS=Rattus norvegicus GN=Bfar PE=2
SV=1
Length = 450
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 121 EKKTKEEKSVGGDELTEPSNDGSSSSSVLTCIDKLREELSCAICLEICFEPSTTTCGHSF 180
E+ K + S+ G E P SV E SC C + P+T CGHSF
Sbjct: 2 EEPQKNDLSMRGQEEDHPVRSSGPQISV--------SEFSCHCCYDTLVNPTTLNCGHSF 53
Query: 181 CKKCLRSAADKCGK-KCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEAR 230
C+ CL K +CP+CR+ VN +L + I+ LFP ++ R
Sbjct: 54 CRHCLALWWMSSKKTECPECREKWEGFPK--VNILLRDAIEKLFPDAIKMR 102
>sp|Q681I0|ORTHL_ARATH E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 OS=Arabidopsis thaliana
GN=ORTHL PE=2 SV=1
Length = 465
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 95 PIAVLDLDEGESSGQESGKNKVQLNEEKKTKEEKSVGGDELTEPSN--DG--SSSSSVLT 150
P+ V D ES G ++ ++ +E KK K + + GD + +N DG +S + +
Sbjct: 45 PLPVSD----ESGGSKADESMTDADETKKRK--RILSGDCEADENNKSDGEIASLNDGVD 98
Query: 151 CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCT 210
+ E+L+C++C ++ P T CGH+FC KC D+ + C CR I + +
Sbjct: 99 AFTAICEDLNCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTIPDKMAAN 158
Query: 211 --VNTVLWNTIQLLFPQEVEARKAAAALNSREAEHQSPQRGFHNNVRTR 257
VN+ L + I+ V+ K A + S Q G N RT+
Sbjct: 159 PRVNSSLVSVIRY-----VKVAKTAGVGTANFFPFTSNQDGPENAFRTK 202
>sp|Q8NCN4|RN169_HUMAN E3 ubiquitin-protein ligase RNF169 OS=Homo sapiens GN=RNF169 PE=1
SV=2
Length = 708
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200
EE CA CLE E + CGHS C+ C + AAD G CP+CR
Sbjct: 64 EESGCAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCR 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,045,994
Number of Sequences: 539616
Number of extensions: 5773580
Number of successful extensions: 19066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 18263
Number of HSP's gapped (non-prelim): 1033
length of query: 426
length of database: 191,569,459
effective HSP length: 120
effective length of query: 306
effective length of database: 126,815,539
effective search space: 38805554934
effective search space used: 38805554934
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)