Query 044354
Match_columns 426
No_of_seqs 334 out of 2017
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00599 rad18 DNA repair pro 99.3 2.7E-12 5.8E-17 132.3 8.3 74 148-223 16-89 (397)
2 smart00504 Ubox Modified RING 99.2 1.1E-11 2.3E-16 95.2 5.1 63 158-222 1-63 (63)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 9.1E-12 2E-16 89.6 2.6 39 161-199 1-42 (42)
4 PF04564 U-box: U-box domain; 99.1 2.5E-11 5.3E-16 97.2 3.5 66 157-223 3-68 (73)
5 PLN03208 E3 ubiquitin-protein 99.1 6.2E-11 1.3E-15 111.0 3.8 50 157-206 17-81 (193)
6 COG5432 RAD18 RING-finger-cont 99.1 1.1E-10 2.5E-15 114.1 4.4 120 148-269 15-185 (391)
7 KOG0287 Postreplication repair 99.1 7.1E-11 1.5E-15 117.6 2.9 73 148-222 13-85 (442)
8 KOG0823 Predicted E3 ubiquitin 99.0 1.5E-10 3.3E-15 110.4 2.8 52 157-208 46-99 (230)
9 PF14835 zf-RING_6: zf-RING of 99.0 4.4E-10 9.5E-15 87.5 3.8 63 153-219 2-65 (65)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 3E-10 6.5E-15 80.0 2.3 38 161-199 1-39 (39)
11 KOG0320 Predicted E3 ubiquitin 98.9 3.8E-10 8.2E-15 103.8 2.5 51 158-209 131-183 (187)
12 KOG0317 Predicted E3 ubiquitin 98.9 8.3E-10 1.8E-14 108.3 2.9 51 156-207 237-287 (293)
13 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.1E-09 2.5E-14 81.0 2.9 46 158-204 2-48 (50)
14 PF00097 zf-C3HC4: Zinc finger 98.8 2E-09 4.4E-14 76.1 2.7 39 161-199 1-41 (41)
15 PF13639 zf-RING_2: Ring finge 98.8 2E-09 4.3E-14 77.6 1.8 40 160-200 2-44 (44)
16 KOG0311 Predicted E3 ubiquitin 98.7 1.4E-09 3.1E-14 109.1 -0.4 78 148-225 33-111 (381)
17 KOG2177 Predicted E3 ubiquitin 98.7 5.8E-09 1.2E-13 98.9 3.6 66 153-222 8-73 (386)
18 PHA02929 N1R/p28-like protein; 98.7 6.6E-09 1.4E-13 100.8 3.6 48 157-205 173-228 (238)
19 cd00162 RING RING-finger (Real 98.7 1E-08 2.3E-13 71.9 3.3 44 160-203 1-45 (45)
20 PF13445 zf-RING_UBOX: RING-ty 98.7 7.4E-09 1.6E-13 75.0 1.9 36 161-197 1-43 (43)
21 smart00184 RING Ring finger. E 98.7 2.1E-08 4.6E-13 67.9 3.4 39 161-199 1-39 (39)
22 KOG0978 E3 ubiquitin ligase in 98.6 1.5E-08 3.2E-13 110.4 1.2 64 147-210 632-695 (698)
23 PHA02926 zinc finger-like prot 98.6 4.4E-08 9.6E-13 93.4 3.7 51 155-205 167-231 (242)
24 PF14634 zf-RING_5: zinc-RING 98.5 4.8E-08 1E-12 70.7 2.9 41 160-201 1-44 (44)
25 KOG2164 Predicted E3 ubiquitin 98.5 6.8E-08 1.5E-12 101.2 3.7 50 158-207 186-239 (513)
26 COG5574 PEX10 RING-finger-cont 98.5 5.1E-08 1.1E-12 94.8 2.6 58 147-206 206-264 (271)
27 KOG2660 Locus-specific chromos 98.4 2.1E-07 4.6E-12 93.1 4.1 76 152-228 9-88 (331)
28 KOG0297 TNF receptor-associate 98.3 4.4E-07 9.6E-12 94.2 4.9 111 155-269 18-140 (391)
29 TIGR00570 cdk7 CDK-activating 98.2 1.2E-06 2.6E-11 87.9 4.8 49 158-206 3-56 (309)
30 KOG4159 Predicted E3 ubiquitin 98.2 1.1E-06 2.3E-11 91.3 3.6 72 156-228 82-157 (398)
31 PF12678 zf-rbx1: RING-H2 zinc 98.1 1.2E-06 2.7E-11 70.2 2.6 40 160-200 21-73 (73)
32 KOG0824 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 85.4 2.6 48 159-206 8-55 (324)
33 KOG4628 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 87.6 2.5 47 159-205 230-279 (348)
34 COG5152 Uncharacterized conser 98.0 3.3E-06 7.1E-11 79.3 2.3 59 158-219 196-254 (259)
35 COG5222 Uncharacterized conser 98.0 6.4E-06 1.4E-10 81.6 4.1 64 159-222 275-339 (427)
36 COG5243 HRD1 HRD ubiquitin lig 97.9 5.2E-06 1.1E-10 84.3 2.6 47 157-204 286-345 (491)
37 KOG0802 E3 ubiquitin ligase [P 97.9 4E-06 8.8E-11 90.5 1.9 47 157-204 290-341 (543)
38 COG5540 RING-finger-containing 97.9 6.4E-06 1.4E-10 81.7 2.6 48 157-204 322-372 (374)
39 KOG1813 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 78.5 2.7 47 158-205 241-287 (313)
40 KOG4367 Predicted Zn-finger pr 97.7 2.3E-05 5.1E-10 80.9 3.0 33 156-188 2-34 (699)
41 PF11789 zf-Nse: Zinc-finger o 97.7 1.9E-05 4.1E-10 60.6 1.7 42 157-198 10-53 (57)
42 PF12861 zf-Apc11: Anaphase-pr 97.5 5.6E-05 1.2E-09 62.4 2.7 47 158-204 21-82 (85)
43 KOG1785 Tyrosine kinase negati 97.4 7.6E-05 1.6E-09 76.6 1.6 50 159-208 370-420 (563)
44 KOG4172 Predicted E3 ubiquitin 97.2 7.5E-05 1.6E-09 56.6 0.1 46 159-204 8-54 (62)
45 KOG1039 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 74.1 2.1 50 156-205 159-222 (344)
46 KOG2879 Predicted E3 ubiquitin 97.2 0.00021 4.5E-09 70.4 2.8 48 157-204 238-287 (298)
47 KOG0825 PHD Zn-finger protein 97.1 5.3E-05 1.1E-09 82.9 -2.2 48 157-205 122-172 (1134)
48 KOG4265 Predicted E3 ubiquitin 97.1 0.00028 6E-09 71.8 2.4 49 156-205 288-337 (349)
49 KOG1002 Nucleotide excision re 96.9 0.00033 7.1E-09 74.2 0.7 50 156-205 534-587 (791)
50 KOG0828 Predicted E3 ubiquitin 96.8 0.00066 1.4E-08 71.4 2.0 49 156-204 569-634 (636)
51 KOG0804 Cytoplasmic Zn-finger 96.7 0.00049 1.1E-08 71.7 1.0 88 156-268 173-268 (493)
52 KOG4739 Uncharacterized protei 96.6 0.00073 1.6E-08 65.5 0.7 62 158-225 3-66 (233)
53 KOG4185 Predicted E3 ubiquitin 96.5 0.0021 4.6E-08 63.9 3.5 64 159-222 4-77 (296)
54 KOG4692 Predicted E3 ubiquitin 96.4 0.0016 3.4E-08 66.2 2.3 47 157-204 421-467 (489)
55 KOG1814 Predicted E3 ubiquitin 96.4 0.0049 1.1E-07 63.9 5.7 47 156-202 182-238 (445)
56 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0021 4.6E-08 63.4 3.0 57 156-214 111-171 (260)
57 PF11793 FANCL_C: FANCL C-term 96.3 0.0015 3.3E-08 52.0 1.2 47 158-204 2-66 (70)
58 KOG3039 Uncharacterized conser 96.3 0.0021 4.6E-08 62.5 2.2 50 157-207 220-273 (303)
59 PF14447 Prok-RING_4: Prokaryo 96.3 0.0022 4.7E-08 48.9 1.6 46 157-205 6-51 (55)
60 KOG1645 RING-finger-containing 96.2 0.0029 6.4E-08 65.4 2.7 48 157-204 3-56 (463)
61 KOG1734 Predicted RING-contain 96.1 0.0017 3.6E-08 64.0 0.6 48 158-205 224-282 (328)
62 KOG4275 Predicted E3 ubiquitin 96.1 0.0012 2.6E-08 65.6 -0.6 42 158-204 300-342 (350)
63 KOG3800 Predicted E3 ubiquitin 95.9 0.0075 1.6E-07 60.0 3.9 46 160-205 2-52 (300)
64 smart00744 RINGv The RING-vari 95.9 0.008 1.7E-07 44.7 3.0 41 160-200 1-49 (49)
65 KOG1571 Predicted E3 ubiquitin 95.8 0.0037 8E-08 63.8 1.5 45 156-204 303-347 (355)
66 KOG1001 Helicase-like transcri 95.8 0.0043 9.3E-08 68.9 2.0 53 152-205 448-501 (674)
67 KOG3161 Predicted E3 ubiquitin 95.7 0.0037 8.1E-08 67.7 1.1 61 155-219 8-76 (861)
68 KOG0827 Predicted E3 ubiquitin 95.7 0.0049 1.1E-07 63.5 1.8 46 159-204 5-56 (465)
69 KOG3002 Zn finger protein [Gen 95.6 0.0092 2E-07 60.2 3.5 107 155-269 45-165 (299)
70 PF14570 zf-RING_4: RING/Ubox 95.6 0.008 1.7E-07 44.7 2.2 43 161-203 1-47 (48)
71 COG5194 APC11 Component of SCF 95.5 0.011 2.4E-07 48.3 2.8 30 175-205 53-82 (88)
72 COG5219 Uncharacterized conser 95.4 0.0051 1.1E-07 69.1 0.8 50 155-204 1466-1523(1525)
73 KOG2817 Predicted E3 ubiquitin 94.5 0.022 4.8E-07 58.9 2.4 48 155-202 331-383 (394)
74 KOG4362 Transcriptional regula 94.2 0.018 3.8E-07 63.5 1.1 53 152-204 15-69 (684)
75 PF05290 Baculo_IE-1: Baculovi 94.2 0.033 7.2E-07 49.7 2.6 50 157-206 79-134 (140)
76 PF07800 DUF1644: Protein of u 94.1 0.068 1.5E-06 49.1 4.4 91 158-270 2-135 (162)
77 KOG1493 Anaphase-promoting com 93.9 0.023 4.9E-07 46.1 0.8 30 175-204 50-81 (84)
78 KOG1941 Acetylcholine receptor 93.8 0.02 4.3E-07 59.2 0.4 48 157-204 364-416 (518)
79 KOG0826 Predicted E3 ubiquitin 93.6 0.06 1.3E-06 54.6 3.5 48 156-204 298-346 (357)
80 KOG1952 Transcription factor N 93.6 0.053 1.1E-06 60.8 3.1 47 156-202 189-245 (950)
81 COG5220 TFB3 Cdk activating ki 93.3 0.029 6.2E-07 54.7 0.7 47 158-204 10-64 (314)
82 KOG0298 DEAD box-containing he 92.9 0.061 1.3E-06 62.7 2.4 59 145-204 1140-1199(1394)
83 PF02891 zf-MIZ: MIZ/SP-RING z 92.8 0.08 1.7E-06 39.5 2.2 44 159-202 3-50 (50)
84 COG5236 Uncharacterized conser 92.7 0.069 1.5E-06 54.5 2.4 46 156-202 59-106 (493)
85 KOG2930 SCF ubiquitin ligase, 92.4 0.073 1.6E-06 45.6 1.7 29 175-204 80-108 (114)
86 KOG3970 Predicted E3 ubiquitin 92.4 0.21 4.5E-06 48.4 5.0 54 152-205 44-106 (299)
87 PF10367 Vps39_2: Vacuolar sor 92.0 0.064 1.4E-06 44.8 1.0 32 155-186 75-108 (109)
88 COG5175 MOT2 Transcriptional r 91.8 0.14 3.1E-06 52.1 3.3 48 159-206 15-66 (480)
89 KOG1428 Inhibitor of type V ad 91.4 0.25 5.4E-06 58.3 4.9 49 156-204 3484-3544(3738)
90 KOG1812 Predicted E3 ubiquitin 91.2 0.2 4.3E-06 52.4 3.8 47 158-204 146-203 (384)
91 KOG2114 Vacuolar assembly/sort 91.2 0.11 2.3E-06 58.5 1.8 40 158-201 840-880 (933)
92 KOG2932 E3 ubiquitin ligase in 90.8 0.09 2E-06 53.0 0.7 43 159-204 91-134 (389)
93 PHA03096 p28-like protein; Pro 89.7 0.17 3.6E-06 50.9 1.6 43 159-201 179-231 (284)
94 KOG3039 Uncharacterized conser 88.6 0.25 5.4E-06 48.5 1.9 37 154-190 39-75 (303)
95 KOG1100 Predicted E3 ubiquitin 88.0 0.32 6.9E-06 46.7 2.2 50 151-205 151-201 (207)
96 KOG1940 Zn-finger protein [Gen 87.4 0.47 1E-05 47.5 3.0 45 158-204 158-206 (276)
97 COG5109 Uncharacterized conser 87.2 0.39 8.5E-06 48.7 2.3 48 154-201 332-384 (396)
98 KOG3579 Predicted E3 ubiquitin 86.1 0.32 7E-06 48.6 1.1 34 158-191 268-305 (352)
99 PF05883 Baculo_RING: Baculovi 85.6 0.3 6.5E-06 43.8 0.5 33 158-190 26-67 (134)
100 PF08746 zf-RING-like: RING-li 84.7 0.92 2E-05 32.8 2.6 39 161-199 1-43 (43)
101 PF03854 zf-P11: P-11 zinc fin 83.2 0.48 1E-05 35.2 0.6 44 159-205 3-47 (50)
102 KOG4445 Uncharacterized conser 82.9 0.36 7.8E-06 48.6 -0.1 48 158-205 115-187 (368)
103 KOG3113 Uncharacterized conser 81.3 1 2.2E-05 44.4 2.3 55 156-213 109-167 (293)
104 KOG3268 Predicted E3 ubiquitin 79.7 1.2 2.6E-05 41.9 2.1 49 156-204 163-228 (234)
105 KOG2462 C2H2-type Zn-finger pr 79.1 1.9 4E-05 43.1 3.3 90 156-268 159-268 (279)
106 KOG0825 PHD Zn-finger protein 77.5 1.3 2.8E-05 49.8 1.8 48 158-205 96-155 (1134)
107 KOG2169 Zn-finger transcriptio 75.6 2.2 4.8E-05 47.5 3.1 68 154-222 302-373 (636)
108 KOG1815 Predicted E3 ubiquitin 75.4 1.6 3.5E-05 46.3 1.9 35 157-191 69-104 (444)
109 PF07191 zinc-ribbons_6: zinc- 75.2 0.33 7.2E-06 38.9 -2.5 40 159-204 2-41 (70)
110 PHA02825 LAP/PHD finger-like p 74.1 3 6.6E-05 38.5 3.0 47 157-204 7-59 (162)
111 PHA02862 5L protein; Provision 73.2 2.8 6E-05 38.3 2.5 46 159-205 3-54 (156)
112 PF06906 DUF1272: Protein of u 72.6 3 6.5E-05 32.1 2.2 44 159-205 6-53 (57)
113 PF12906 RINGv: RING-variant d 71.9 2.9 6.4E-05 30.6 2.0 39 161-199 1-47 (47)
114 PF10272 Tmpp129: Putative tra 68.9 3 6.6E-05 43.3 2.0 30 176-205 311-352 (358)
115 PLN03086 PRLI-interacting fact 68.2 9.9 0.00021 41.9 5.8 25 242-266 539-563 (567)
116 KOG3993 Transcription factor ( 65.7 0.72 1.5E-05 48.5 -3.2 104 152-269 261-382 (500)
117 PF10235 Cript: Microtubule-as 65.7 3.9 8.4E-05 34.4 1.7 38 159-206 45-82 (90)
118 PF14569 zf-UDP: Zinc-binding 62.9 5.8 0.00012 32.5 2.1 48 158-205 9-63 (80)
119 COG3813 Uncharacterized protei 62.4 8.8 0.00019 31.1 3.1 44 160-206 7-54 (84)
120 KOG4185 Predicted E3 ubiquitin 61.7 1.6 3.4E-05 43.5 -1.6 44 159-202 208-265 (296)
121 KOG3899 Uncharacterized conser 60.4 5 0.00011 40.6 1.6 32 176-207 325-368 (381)
122 PF04216 FdhE: Protein involve 59.7 2.1 4.6E-05 42.8 -1.1 43 159-202 173-220 (290)
123 PF15295 CCDC50_N: Coiled-coil 58.9 7.5 0.00016 34.9 2.4 22 373-394 25-46 (132)
124 KOG2034 Vacuolar sorting prote 58.3 5 0.00011 45.9 1.4 37 154-190 813-851 (911)
125 TIGR01562 FdhE formate dehydro 58.0 3.1 6.7E-05 42.3 -0.2 43 158-201 184-232 (305)
126 KOG0314 Predicted E3 ubiquitin 57.1 4.8 0.0001 43.0 1.0 67 154-222 215-284 (448)
127 KOG1812 Predicted E3 ubiquitin 56.1 5.9 0.00013 41.5 1.4 43 156-199 304-351 (384)
128 PF13913 zf-C2HC_2: zinc-finge 51.7 11 0.00023 24.0 1.6 24 244-267 2-25 (25)
129 COG5183 SSM4 Protein involved 51.3 9.9 0.00021 43.3 2.3 49 157-205 11-67 (1175)
130 PRK03564 formate dehydrogenase 49.4 6.1 0.00013 40.3 0.3 44 157-201 186-234 (309)
131 KOG2068 MOT2 transcription fac 49.3 12 0.00025 38.5 2.3 46 159-205 250-299 (327)
132 PF07975 C1_4: TFIIH C1-like d 47.6 17 0.00038 27.4 2.4 25 175-200 26-50 (51)
133 PRK04023 DNA polymerase II lar 46.8 15 0.00032 43.0 2.8 61 158-221 626-693 (1121)
134 KOG2113 Predicted RNA binding 46.7 11 0.00023 38.6 1.5 46 155-203 340-386 (394)
135 PF02318 FYVE_2: FYVE-type zin 45.8 2.6 5.7E-05 36.7 -2.6 44 158-201 54-102 (118)
136 PLN02189 cellulose synthase 45.6 13 0.00028 43.5 2.2 46 159-204 35-87 (1040)
137 KOG1815 Predicted E3 ubiquitin 45.6 12 0.00027 39.7 1.9 31 169-201 177-207 (444)
138 PF10497 zf-4CXXC_R1: Zinc-fin 45.5 16 0.00035 31.4 2.2 28 177-204 37-72 (105)
139 PF10571 UPF0547: Uncharacteri 44.9 12 0.00026 24.3 1.1 9 160-168 2-10 (26)
140 KOG2789 Putative Zn-finger pro 44.4 10 0.00022 39.8 1.0 32 157-188 73-106 (482)
141 KOG0309 Conserved WD40 repeat- 43.7 12 0.00026 42.3 1.5 39 159-198 1029-1069(1081)
142 PLN02436 cellulose synthase A 42.6 15 0.00033 43.1 2.1 46 159-204 37-89 (1094)
143 KOG4642 Chaperone-dependent E3 39.8 41 0.0009 33.6 4.3 67 156-223 209-275 (284)
144 PF15616 TerY-C: TerY-C metal 39.5 17 0.00038 32.6 1.6 45 153-204 72-116 (131)
145 COG0068 HypF Hydrogenase matur 39.5 13 0.00028 41.9 0.9 49 156-204 99-184 (750)
146 KOG3476 Microtubule-associated 37.9 6.1 0.00013 33.0 -1.4 39 159-207 55-93 (100)
147 COG1675 TFA1 Transcription ini 37.7 42 0.0009 31.7 3.9 50 157-222 112-161 (176)
148 KOG3183 Predicted Zn-finger pr 36.6 14 0.0003 36.4 0.5 64 159-222 9-84 (250)
149 PRK06266 transcription initiat 36.5 20 0.00043 33.6 1.6 35 157-207 116-150 (178)
150 PF05605 zf-Di19: Drought indu 36.3 70 0.0015 23.7 4.2 20 244-264 31-50 (54)
151 COG5242 TFB4 RNA polymerase II 36.3 16 0.00034 35.9 0.9 12 193-204 274-285 (296)
152 PLN02638 cellulose synthase A 36.2 22 0.00048 41.9 2.2 46 159-204 18-70 (1079)
153 KOG1356 Putative transcription 36.0 9.9 0.00021 43.4 -0.6 44 159-202 230-280 (889)
154 PF06869 DUF1258: Protein of u 35.6 35 0.00076 34.0 3.2 56 177-235 17-74 (258)
155 cd00065 FYVE FYVE domain; Zinc 35.5 21 0.00046 26.3 1.3 32 159-190 3-38 (57)
156 KOG2979 Protein involved in DN 35.2 18 0.00039 36.0 1.0 46 157-202 175-222 (262)
157 PRK14559 putative protein seri 34.9 21 0.00045 40.1 1.6 9 159-167 2-10 (645)
158 PRK14714 DNA polymerase II lar 34.7 28 0.0006 41.8 2.6 64 158-221 667-739 (1337)
159 PF06844 DUF1244: Protein of u 34.4 21 0.00045 28.4 1.1 13 179-191 11-23 (68)
160 KOG2612 Predicted integral mem 33.9 45 0.00097 28.1 3.0 30 240-269 70-99 (103)
161 TIGR00373 conserved hypothetic 32.8 23 0.00049 32.5 1.3 35 157-207 108-142 (158)
162 PLN02400 cellulose synthase 32.6 23 0.00049 41.8 1.5 47 159-205 37-90 (1085)
163 KOG0827 Predicted E3 ubiquitin 32.6 4.9 0.00011 42.0 -3.4 46 159-205 197-246 (465)
164 PRK11595 DNA utilization prote 32.2 33 0.00072 33.0 2.4 38 160-203 7-44 (227)
165 PF04710 Pellino: Pellino; In 31.8 15 0.00033 38.6 0.0 48 158-205 328-402 (416)
166 PF01363 FYVE: FYVE zinc finge 31.8 17 0.00037 28.0 0.3 33 157-189 8-44 (69)
167 smart00734 ZnF_Rad18 Rad18-lik 31.8 32 0.0007 22.1 1.5 23 245-267 2-24 (26)
168 smart00647 IBR In Between Ring 31.0 20 0.00043 26.7 0.5 30 159-188 19-58 (64)
169 PF05502 Dynactin_p62: Dynacti 31.0 20 0.00043 38.8 0.6 49 156-204 3-63 (483)
170 KOG0269 WD40 repeat-containing 30.6 36 0.00077 38.7 2.5 43 159-202 780-826 (839)
171 KOG2807 RNA polymerase II tran 30.3 28 0.0006 35.9 1.5 10 175-184 350-359 (378)
172 PLN02195 cellulose synthase A 30.1 35 0.00076 39.9 2.4 46 159-204 7-59 (977)
173 smart00064 FYVE Protein presen 30.0 32 0.00069 26.4 1.5 32 159-190 11-46 (68)
174 PLN02915 cellulose synthase A 29.9 33 0.00071 40.4 2.1 46 159-204 16-68 (1044)
175 KOG4718 Non-SMC (structural ma 29.7 26 0.00056 34.1 1.1 46 158-204 181-227 (235)
176 KOG2231 Predicted E3 ubiquitin 29.6 35 0.00076 38.4 2.2 44 160-203 2-51 (669)
177 PF09986 DUF2225: Uncharacteri 29.6 33 0.00071 33.0 1.8 50 157-207 4-62 (214)
178 PF08209 Sgf11: Sgf11 (transcr 27.9 25 0.00055 24.2 0.5 26 244-269 4-29 (33)
179 PF14353 CpXC: CpXC protein 27.9 41 0.0009 29.2 2.0 47 159-205 2-50 (128)
180 PF12773 DZR: Double zinc ribb 27.4 54 0.0012 23.6 2.3 27 178-204 12-40 (50)
181 cd00350 rubredoxin_like Rubred 27.4 36 0.00078 22.9 1.2 10 193-202 17-26 (33)
182 KOG3053 Uncharacterized conser 26.8 36 0.00078 34.0 1.6 50 155-204 17-82 (293)
183 PF13240 zinc_ribbon_2: zinc-r 26.7 16 0.00034 23.0 -0.6 8 194-201 14-21 (23)
184 KOG3623 Homeobox transcription 26.5 25 0.00055 39.8 0.5 54 193-269 281-337 (1007)
185 PF14446 Prok-RING_1: Prokaryo 26.3 67 0.0015 24.6 2.6 30 158-187 5-38 (54)
186 KOG3842 Adaptor protein Pellin 25.8 47 0.001 34.2 2.2 48 158-205 341-415 (429)
187 KOG3799 Rab3 effector RIM1 and 25.4 35 0.00075 31.0 1.1 21 156-179 63-83 (169)
188 KOG2042 Ubiquitin fusion degra 25.3 91 0.002 36.5 4.6 68 154-223 866-934 (943)
189 PLN03086 PRLI-interacting fact 25.1 76 0.0016 35.2 3.8 48 157-204 406-464 (567)
190 COG1198 PriA Primosomal protei 25.1 36 0.00077 38.8 1.3 66 157-226 434-507 (730)
191 PF10083 DUF2321: Uncharacteri 24.6 39 0.00084 31.3 1.2 26 177-206 27-52 (158)
192 TIGR00143 hypF [NiFe] hydrogen 24.2 32 0.00068 39.1 0.7 47 157-203 67-150 (711)
193 PF10186 Atg14: UV radiation r 24.0 44 0.00094 32.6 1.6 22 160-189 1-22 (302)
194 TIGR03826 YvyF flagellar opero 23.6 37 0.0008 30.7 0.9 87 159-258 4-95 (137)
195 PRK11088 rrmA 23S rRNA methylt 23.4 45 0.00097 32.7 1.5 22 159-180 3-27 (272)
196 KOG0824 Predicted E3 ubiquitin 23.2 25 0.00055 35.8 -0.2 48 156-204 103-151 (324)
197 PF01485 IBR: IBR domain; Int 22.7 22 0.00047 26.5 -0.7 30 159-188 19-58 (64)
198 KOG2807 RNA polymerase II tran 22.5 27 0.00058 36.0 -0.2 28 177-204 329-356 (378)
199 TIGR00627 tfb4 transcription f 22.0 53 0.0012 33.1 1.8 9 194-202 270-278 (279)
200 PF04423 Rad50_zn_hook: Rad50 21.5 70 0.0015 23.8 1.9 11 195-205 22-32 (54)
201 PF04710 Pellino: Pellino; In 21.3 31 0.00068 36.4 0.0 43 159-204 278-339 (416)
202 COG4647 AcxC Acetone carboxyla 21.2 44 0.00095 30.1 0.9 20 163-182 62-81 (165)
203 PF10426 zf-RAG1: Recombinatio 21.1 46 0.00099 22.5 0.7 25 243-267 3-27 (30)
204 PF03833 PolC_DP2: DNA polymer 21.0 32 0.0007 39.6 0.0 45 158-205 655-704 (900)
205 COG3492 Uncharacterized protei 20.7 48 0.001 28.1 1.0 13 179-191 42-54 (104)
206 PF14205 Cys_rich_KTR: Cystein 20.6 40 0.00088 25.9 0.4 11 157-167 3-13 (55)
207 KOG1829 Uncharacterized conser 20.3 33 0.00072 37.9 -0.1 23 174-200 535-557 (580)
208 smart00154 ZnF_AN1 AN1-like Zi 20.0 70 0.0015 22.5 1.5 22 161-182 1-24 (39)
No 1
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=2.7e-12 Score=132.32 Aligned_cols=74 Identities=26% Similarity=0.553 Sum_probs=64.4
Q ss_pred chhhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 148 VLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 148 ~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
.++.+..++..+.|+||+++|..|++++|||+||..||..|+.. ...||.|+..+... .+..|..|.++|+.|.
T Consensus 16 ~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~-~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 16 PIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQES-KLRSNWLVSEIVESFK 89 (397)
T ss_pred CcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccc-cCccchHHHHHHHHHH
Confidence 44556778899999999999999999999999999999999976 56899999998743 6778999999998774
No 2
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.23 E-value=1.1e-11 Score=95.23 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=55.0
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
++.||||++++.+||+++|||+||..||..|+.. ...||.|+..+.. ..+..|..|.+.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~-~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh-hhceeCHHHHHHHHhC
Confidence 3789999999999999999999999999999987 7789999999863 4567788888887753
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=9.1e-12 Score=89.64 Aligned_cols=39 Identities=41% Similarity=1.096 Sum_probs=31.3
Q ss_pred ccccccCCCCceeccCCCcchhhhHHhhhhhcC---CCCccc
Q 044354 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCG---KKCPKC 199 (426)
Q Consensus 161 CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~---~~CP~C 199 (426)
||||+++|.+||+++|||+||..||..|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987643 469987
No 4
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.14 E-value=2.5e-11 Score=97.19 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=55.0
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
+.|.||||.++|.+||+++|||+|+..||..|+......||+|+..+.. ..+..|..|...|+.|+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE-SDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG-GGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc-ccceECHHHHHHHHHHH
Confidence 5699999999999999999999999999999998878899999998884 46788999999999984
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=6.2e-11 Score=111.04 Aligned_cols=50 Identities=34% Similarity=0.806 Sum_probs=43.5
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhh---------------cCCCCccccccccCC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK---------------CGKKCPKCRQLISNG 206 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~---------------~~~~CP~CR~~i~~~ 206 (426)
.++.|+||++.+.+|++++|||.||..||..|+.. ....||+|+..+...
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 46899999999999999999999999999999753 135799999998753
No 6
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.05 E-value=1.1e-10 Score=114.13 Aligned_cols=120 Identities=23% Similarity=0.352 Sum_probs=82.9
Q ss_pred chhhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC----
Q 044354 148 VLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF---- 223 (426)
Q Consensus 148 ~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~---- 223 (426)
.++.+..+...+.|-||.+.+..|+.++|||+||.-||..++.. ...||+|+...... .++-+..+..+++.|.
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~es-rlr~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCES-RLRGSSGSREINESHARNRD 92 (391)
T ss_pred cCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhh-hcccchhHHHHHHhhhhccH
Confidence 34555667777999999999999999999999999999999987 78899999876542 1233444444443331
Q ss_pred ------------hhH-HH----------------------------------HHHHHHHhcccccccCccccccccccCc
Q 044354 224 ------------PQE-VE----------------------------------ARKAAAALNSREAEHQSPQRGFHNNVRT 256 (426)
Q Consensus 224 ------------p~E-~~----------------------------------~r~~~~~~~~~~~~~~~pc~gC~~~i~~ 256 (426)
|.. .. +++........+.+....|+.|.+.++.
T Consensus 93 ~l~~~L~~~~~~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP~C~~~~P~ 172 (391)
T COG5432 93 LLRKVLESLCRLPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPH 172 (391)
T ss_pred HHHHHHhcccCCCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCchhhccCch
Confidence 000 00 0000000011223455789999999999
Q ss_pred hhHHHHhhhcccc
Q 044354 257 RSMRSSATSSGDA 269 (426)
Q Consensus 257 ~~lR~H~~~c~~~ 269 (426)
..+..|+.+|...
T Consensus 173 ~~i~~HLD~CL~~ 185 (391)
T COG5432 173 NQINQHLDSCLNS 185 (391)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999865
No 7
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.05 E-value=7.1e-11 Score=117.58 Aligned_cols=73 Identities=27% Similarity=0.623 Sum_probs=63.6
Q ss_pred chhhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 148 VLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 148 ~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
.++.+..+.+.+.|-||+++|.-|+++||+|+||.-||..++.. ...||.|...+.. ..+..|..|.+||+.|
T Consensus 13 sipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 13 SIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTE-SDLRNNRILDEIVKSL 85 (442)
T ss_pred cCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccch-hhhhhhhHHHHHHHHH
Confidence 35566677788999999999999999999999999999999987 7899999999884 4577788888888776
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.5e-10 Score=110.40 Aligned_cols=52 Identities=35% Similarity=0.774 Sum_probs=45.2
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhc--CCCCccccccccCCCC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC--GKKCPKCRQLISNGRS 208 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~--~~~CP~CR~~i~~~~~ 208 (426)
..|.|.||++.-++||++.|||.||+.||.+|+... ...||+|+..+.....
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 458999999999999999999999999999999763 3468999998886443
No 9
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.97 E-value=4.4e-10 Score=87.48 Aligned_cols=63 Identities=33% Similarity=0.728 Sum_probs=36.7
Q ss_pred hhhcccccccccccCCCCcee-ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHH
Q 044354 153 DKLREELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTI 219 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI 219 (426)
..++..+.|++|.+++..||. ..|.|+||..||...+. ..||+|..+... ..+.+|..|.++|
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 456778999999999999997 47999999999988764 469999998773 4678899998875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=3e-10 Score=80.04 Aligned_cols=38 Identities=50% Similarity=1.199 Sum_probs=33.6
Q ss_pred ccccccCCCCc-eeccCCCcchhhhHHhhhhhcCCCCccc
Q 044354 161 CAICLEICFEP-STTTCGHSFCKKCLRSAADKCGKKCPKC 199 (426)
Q Consensus 161 CpIC~~~l~~P-v~lpCgH~FC~~CI~~~l~~~~~~CP~C 199 (426)
|+||++.+.+| +.++|||+||..||..|+.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 56899999999999999988 7899988
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.8e-10 Score=103.85 Aligned_cols=51 Identities=39% Similarity=0.964 Sum_probs=43.5
Q ss_pred cccccccccCCCC--ceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCc
Q 044354 158 ELSCAICLEICFE--PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSC 209 (426)
Q Consensus 158 ~l~CpIC~~~l~~--Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l 209 (426)
.+.||||++.+.+ |+.+.|||.||..||+..++. ..+||.|++.|.....+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 3899999998865 566899999999999999988 78999999988765443
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.3e-10 Score=108.28 Aligned_cols=51 Identities=33% Similarity=0.804 Sum_probs=45.6
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
+...+|.+|++...+|..+||||.||+.||..|... ..-||+||..+...+
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcc
Confidence 355899999999999999999999999999999987 567999999988644
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.1e-09 Score=81.04 Aligned_cols=46 Identities=39% Similarity=0.859 Sum_probs=40.7
Q ss_pred cccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+..|.||++...+++.+||||. ||..|+..|+.. ...||+||++|.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 4789999999999999999999 999999999984 789999999876
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=2e-09 Score=76.11 Aligned_cols=39 Identities=49% Similarity=1.102 Sum_probs=36.0
Q ss_pred ccccccCCCCce-eccCCCcchhhhHHhhhh-hcCCCCccc
Q 044354 161 CAICLEICFEPS-TTTCGHSFCKKCLRSAAD-KCGKKCPKC 199 (426)
Q Consensus 161 CpIC~~~l~~Pv-~lpCgH~FC~~CI~~~l~-~~~~~CP~C 199 (426)
|+||++.+.+|+ +++|||.||..||..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 556789988
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.79 E-value=2e-09 Score=77.64 Aligned_cols=40 Identities=35% Similarity=0.892 Sum_probs=34.2
Q ss_pred cccccccCCC---CceeccCCCcchhhhHHhhhhhcCCCCcccc
Q 044354 160 SCAICLEICF---EPSTTTCGHSFCKKCLRSAADKCGKKCPKCR 200 (426)
Q Consensus 160 ~CpIC~~~l~---~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR 200 (426)
.|+||++.+. .++.++|||.||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4566899999999999999988 67999996
No 16
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-09 Score=109.07 Aligned_cols=78 Identities=26% Similarity=0.597 Sum_probs=68.4
Q ss_pred chhhhhhhcccccccccccCCCCceecc-CCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChh
Q 044354 148 VLTCIDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQ 225 (426)
Q Consensus 148 ~~~~l~~l~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~ 225 (426)
....+..+...+.|+||+++++..++++ |+|.||..||...+..++..||.||+.+.+...|.++.....||..+|+.
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 3444567788899999999999998875 99999999999999988899999999999988999888888888888766
No 17
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.8e-09 Score=98.89 Aligned_cols=66 Identities=41% Similarity=0.800 Sum_probs=56.0
Q ss_pred hhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 153 DKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
..+.+.+.|+||++.|..|++++|||+||..|+..++. ....||.|+. ... .+..|..+.+++..+
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERL 73 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHH
Confidence 44567899999999999998899999999999999987 5679999996 332 566788888888877
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.73 E-value=6.6e-09 Score=100.83 Aligned_cols=48 Identities=29% Similarity=0.815 Sum_probs=40.5
Q ss_pred ccccccccccCCCCc--------eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEP--------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P--------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.+..|+||++.+.++ +.++|+|.||..||..|+.. ...||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 457999999987653 45689999999999999976 6799999998763
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.71 E-value=1e-08 Score=71.90 Aligned_cols=44 Identities=41% Similarity=0.931 Sum_probs=38.1
Q ss_pred cccccccCCCCceecc-CCCcchhhhHHhhhhhcCCCCccccccc
Q 044354 160 SCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLI 203 (426)
Q Consensus 160 ~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i 203 (426)
.|+||++.+..++.++ |||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997787765 9999999999999987677899998753
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.68 E-value=7.4e-09 Score=74.99 Aligned_cols=36 Identities=47% Similarity=1.056 Sum_probs=23.0
Q ss_pred ccccccCCCC----ceeccCCCcchhhhHHhhhhhc---CCCCc
Q 044354 161 CAICLEICFE----PSTTTCGHSFCKKCLRSAADKC---GKKCP 197 (426)
Q Consensus 161 CpIC~~~l~~----Pv~lpCgH~FC~~CI~~~l~~~---~~~CP 197 (426)
||||.+ +.+ |+.|+|||+||..||.+++..+ .++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 887 9999999999999999999863 45677
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.65 E-value=2.1e-08 Score=67.93 Aligned_cols=39 Identities=41% Similarity=1.068 Sum_probs=35.8
Q ss_pred ccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccc
Q 044354 161 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKC 199 (426)
Q Consensus 161 CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~C 199 (426)
|+||++....++.++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556789987
No 22
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-08 Score=110.36 Aligned_cols=64 Identities=25% Similarity=0.648 Sum_probs=56.9
Q ss_pred cchhhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcc
Q 044354 147 SVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCT 210 (426)
Q Consensus 147 ~~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~ 210 (426)
.....+..+...+.||+|..-+++.|++.|||.||..||...+.....+||.|...|...+.++
T Consensus 632 ~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 632 VLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3456678889999999999999999999999999999999999988999999999999765544
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.55 E-value=4.4e-08 Score=93.37 Aligned_cols=51 Identities=29% Similarity=0.761 Sum_probs=39.9
Q ss_pred hcccccccccccCCCC---------ceeccCCCcchhhhHHhhhhhc-----CCCCccccccccC
Q 044354 155 LREELSCAICLEICFE---------PSTTTCGHSFCKKCLRSAADKC-----GKKCPKCRQLISN 205 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~---------Pv~lpCgH~FC~~CI~~~l~~~-----~~~CP~CR~~i~~ 205 (426)
...+..|+||++...+ ++..+|+|.||..||..|.... ...||+||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3457899999997643 3446899999999999998752 2459999998763
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=4.8e-08 Score=70.65 Aligned_cols=41 Identities=46% Similarity=1.067 Sum_probs=35.0
Q ss_pred cccccccCC---CCceeccCCCcchhhhHHhhhhhcCCCCccccc
Q 044354 160 SCAICLEIC---FEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 160 ~CpIC~~~l---~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
.|+||...+ ..|++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999988 356779999999999999988 44679999974
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.8e-08 Score=101.23 Aligned_cols=50 Identities=36% Similarity=0.762 Sum_probs=43.6
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhc----CCCCccccccccCCC
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC----GKKCPKCRQLISNGR 207 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~----~~~CP~CR~~i~~~~ 207 (426)
+..||||+....-|+.+.|||.||..||..+|... ...||+|+..|...+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 68999999999999999999999999999998764 247999999888643
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.1e-08 Score=94.82 Aligned_cols=58 Identities=36% Similarity=0.622 Sum_probs=46.4
Q ss_pred cchhhhhhhcccccccccccCCCCceeccCCCcchhhhHHh-hhhhcCCCCccccccccCC
Q 044354 147 SVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRS-AADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 147 ~~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~-~l~~~~~~CP~CR~~i~~~ 206 (426)
...+++. ..++.|+||++....|+.++|||.||..||.. |-....-.||+||..+...
T Consensus 206 n~~pfip--~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 206 NGLPFIP--LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccCCccc--ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3344444 45799999999999999999999999999999 6655344599999877643
No 27
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.40 E-value=2.1e-07 Score=93.06 Aligned_cols=76 Identities=25% Similarity=0.595 Sum_probs=64.6
Q ss_pred hhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCC---CcchhHHHHHHHHHHChhHH
Q 044354 152 IDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR---SCTVNTVLWNTIQLLFPQEV 227 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~---~l~~N~~L~~lI~~l~p~E~ 227 (426)
+..+.....|.+|..+|.++.++ .|.|+||..||..++.. ...||.|...+.... .+..+..|+.++.+++|.-.
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~ 87 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQ 87 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcchHH
Confidence 44566789999999999999885 59999999999999988 789999998877643 46778999999999998754
Q ss_pred H
Q 044354 228 E 228 (426)
Q Consensus 228 ~ 228 (426)
+
T Consensus 88 e 88 (331)
T KOG2660|consen 88 E 88 (331)
T ss_pred H
Confidence 3
No 28
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.33 E-value=4.4e-07 Score=94.24 Aligned_cols=111 Identities=25% Similarity=0.465 Sum_probs=71.5
Q ss_pred hcccccccccccCCCCcee-ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChh--------
Q 044354 155 LREELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQ-------- 225 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~-------- 225 (426)
+++++.|++|..++.+|+. +.|||.||..|+..|+.. ...||.|+..+.....+.....+...+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC 96 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGC 96 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCc
Confidence 6677999999999999999 499999999999999988 889999988877655444333333333322110
Q ss_pred --HHHHHHHHHHhcccccccCccccc-cccccCchhHHHHhhhcccc
Q 044354 226 --EVEARKAAAALNSREAEHQSPQRG-FHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 226 --E~~~r~~~~~~~~~~~~~~~pc~g-C~~~i~~~~lR~H~~~c~~~ 269 (426)
.............+ ...+|.. |+-.++...+..|+...+.+
T Consensus 97 ~~~~~l~~~~~Hl~~c---~~~~C~~~C~~~~~~~d~~~hl~~~C~~ 140 (391)
T KOG0297|consen 97 RADLELEALQGHLSTC---DPLKCPHRCGVQVPRDDLEDHLEAECPR 140 (391)
T ss_pred cccccHHHHHhHhccC---CcccCccccccccchHHHHHHHhccccc
Confidence 01111111111111 2334433 88888888888887544444
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.2e-06 Score=87.85 Aligned_cols=49 Identities=24% Similarity=0.706 Sum_probs=39.1
Q ss_pred cccccccccC-CCCcee----ccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 158 ELSCAICLEI-CFEPST----TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 158 ~l~CpIC~~~-l~~Pv~----lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+..||||+.. +.+|-. .+|||.||..|+..++..+...||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4689999983 445532 269999999999998877677899999988753
No 30
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-06 Score=91.30 Aligned_cols=72 Identities=31% Similarity=0.722 Sum_probs=58.2
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCC----cchhHHHHHHHHHHChhHHH
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRS----CTVNTVLWNTIQLLFPQEVE 228 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~----l~~N~~L~~lI~~l~p~E~~ 228 (426)
..+|.|.||...+..||++||||+||..||.+.+.. ...||.|+..+..... ..+|..+..+|..|++....
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSS 157 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 567999999999999999999999999999998775 7789999999875221 22356666888888776655
No 31
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.15 E-value=1.2e-06 Score=70.18 Aligned_cols=40 Identities=38% Similarity=0.854 Sum_probs=32.4
Q ss_pred cccccccCCCCc------------ee-ccCCCcchhhhHHhhhhhcCCCCcccc
Q 044354 160 SCAICLEICFEP------------ST-TTCGHSFCKKCLRSAADKCGKKCPKCR 200 (426)
Q Consensus 160 ~CpIC~~~l~~P------------v~-lpCgH~FC~~CI~~~l~~~~~~CP~CR 200 (426)
.|+||++.|.++ +. .+|||.|+..||..|+.. ..+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 499999998433 22 479999999999999987 56999997
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-06 Score=85.39 Aligned_cols=48 Identities=29% Similarity=0.618 Sum_probs=44.1
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
-.|+||+....-||.++|+|.||.-||+.........|++||.+|...
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 479999999999999999999999999999888777899999999864
No 33
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.9e-06 Score=87.65 Aligned_cols=47 Identities=30% Similarity=0.614 Sum_probs=40.5
Q ss_pred ccccccccCCCCc---eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFEP---STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~P---v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
..|.||++.|..- ..|||.|.|...||..|+......||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4899999999754 4589999999999999998866679999987664
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.98 E-value=3.3e-06 Score=79.33 Aligned_cols=59 Identities=31% Similarity=0.587 Sum_probs=46.5
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTI 219 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI 219 (426)
.|.|.||...|..||++.|||.||..|...-+.. +..|-+|.+.... .+.+...+..++
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G--~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG--RFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc--ceeHHhhHHHHH
Confidence 3789999999999999999999999999887766 7899999887553 233334444444
No 35
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=6.4e-06 Score=81.56 Aligned_cols=64 Identities=27% Similarity=0.526 Sum_probs=48.0
Q ss_pred ccccccccCCCCceecc-CCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 159 LSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
|.|+.|..++.+|+.++ |+|.||..||...+-...+.||.|...-...+.|..+.....-|+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~ 339 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKA 339 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHH
Confidence 89999999999999985 89999999999988777899999965322223344444444444444
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.2e-06 Score=84.27 Aligned_cols=47 Identities=28% Similarity=0.800 Sum_probs=39.6
Q ss_pred ccccccccccCC-CC------------ceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEIC-FE------------PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l-~~------------Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
++-.|.||++-+ .. |..+||||.|...|++.|+.. +.+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 567899999974 33 366899999999999999987 779999999843
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4e-06 Score=90.50 Aligned_cols=47 Identities=38% Similarity=0.873 Sum_probs=42.1
Q ss_pred ccccccccccCCCC-----ceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFE-----PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-----Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
.+..|+||.+.+.. |..++|+|.||..|+..|+.. ...||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 45789999999988 788999999999999999988 789999999544
No 38
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.4e-06 Score=81.73 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=40.7
Q ss_pred ccccccccccCCCCc---eeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEP---STTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P---v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
....|.||+..+.+- +.+||.|.|...|+.+|+..-..+||+|+.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 457899999977532 558999999999999999755789999999876
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=78.54 Aligned_cols=47 Identities=36% Similarity=0.842 Sum_probs=41.8
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.+.|-||...|..||++.|+|+||..|...-+.. +..|++|.+.+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 3679999999999999999999999999887766 6789999887764
No 40
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.68 E-value=2.3e-05 Score=80.91 Aligned_cols=33 Identities=36% Similarity=0.881 Sum_probs=30.3
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhh
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSA 188 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~ 188 (426)
++++.|+||...|.+|++++|+|..|..|....
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 567999999999999999999999999998754
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.68 E-value=1.9e-05 Score=60.60 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=30.1
Q ss_pred ccccccccccCCCCcee-ccCCCcchhhhHHhhhh-hcCCCCcc
Q 044354 157 EELSCAICLEICFEPST-TTCGHSFCKKCLRSAAD-KCGKKCPK 198 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~-~~~~~CP~ 198 (426)
..+.|||.+..|.+||. ..|||+|....|..|+. .....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45899999999999998 58999999999999994 33567998
No 42
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.54 E-value=5.6e-05 Score=62.43 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=35.3
Q ss_pred cccccccccCCC-----------C-cee-ccCCCcchhhhHHhhhhhc--CCCCcccccccc
Q 044354 158 ELSCAICLEICF-----------E-PST-TTCGHSFCKKCLRSAADKC--GKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~-----------~-Pv~-lpCgH~FC~~CI~~~l~~~--~~~CP~CR~~i~ 204 (426)
+-.|.||...|. + |++ -.|+|.|...||.+|+... ...||+||+++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456777766654 1 333 3699999999999999863 468999999865
No 43
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.35 E-value=7.6e-05 Score=76.57 Aligned_cols=50 Identities=34% Similarity=0.693 Sum_probs=43.3
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhc-CCCCccccccccCCCC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC-GKKCPKCRQLISNGRS 208 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~~~~~ 208 (426)
-.|.||-+.-++-.+-||||..|..|+..|.... +..||+||..|..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 4699999998888888999999999999998554 6799999999886543
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=7.5e-05 Score=56.61 Aligned_cols=46 Identities=33% Similarity=0.639 Sum_probs=40.3
Q ss_pred ccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
-.|.||.+...+.|...|||. .|..|-.+.+......||+||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999999999999999994 6999998888766789999999876
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00015 Score=74.07 Aligned_cols=50 Identities=38% Similarity=0.755 Sum_probs=39.8
Q ss_pred cccccccccccCCCCce-----e---ccCCCcchhhhHHhhhhhcC------CCCccccccccC
Q 044354 156 REELSCAICLEICFEPS-----T---TTCGHSFCKKCLRSAADKCG------KKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv-----~---lpCgH~FC~~CI~~~l~~~~------~~CP~CR~~i~~ 205 (426)
..+..|.||++...... . .+|.|.||..||..|-.... ..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34689999999887766 3 46999999999999974433 679999987653
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00021 Score=70.37 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=40.1
Q ss_pred ccccccccccCCCCceec-cCCCcchhhhHHhhhh-hcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPSTT-TCGHSFCKKCLRSAAD-KCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~-~~~~~CP~CR~~i~ 204 (426)
.+..||+|.+....|.+. +|||+||..||..... ...+.||.|..++.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 457899999999999886 5999999999987653 23579999988765
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.14 E-value=5.3e-05 Score=82.93 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=40.0
Q ss_pred ccccccccccCCCCcee---ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPST---TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~---lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
..-.||+|+.-+.+-.. .+|+|.||..||..|... ..+||+|+..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 34689999988776544 479999999999999876 6799999998775
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00028 Score=71.76 Aligned_cols=49 Identities=31% Similarity=0.695 Sum_probs=42.1
Q ss_pred cccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 156 REELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+....|.||+.-.++.++|||.|. .|..|.+...-+ ...||+||.+|..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 346789999999999999999995 699999877644 6789999999874
No 49
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.85 E-value=0.00033 Score=74.15 Aligned_cols=50 Identities=24% Similarity=0.704 Sum_probs=42.4
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhh----hcCCCCccccccccC
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD----KCGKKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~----~~~~~CP~CR~~i~~ 205 (426)
.....|.+|.+.-.+++...|.|.||..||.+++. ..+.+||.|...+.-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45678999999999999999999999999988754 335789999887663
No 50
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00066 Score=71.44 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=38.9
Q ss_pred cccccccccccCCCC-----------------ceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICFE-----------------PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~-----------------Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+....|+||+..+.- =+.+||.|.|...|+..|+..-+..||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 445679999985521 1235999999999999999865678999999876
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.75 E-value=0.00049 Score=71.73 Aligned_cols=88 Identities=27% Similarity=0.351 Sum_probs=58.7
Q ss_pred cccccccccccCCCCce----eccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHH
Q 044354 156 REELSCAICLEICFEPS----TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARK 231 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv----~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~ 231 (426)
.+.-+||||++.+..-+ ++.|.|+|...|+..|... .||+||...... .++ .
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~p~-----------~ve---------~- 228 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQSPS-----------VVE---------S- 228 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcCcc-----------hhh---------h-
Confidence 34568999999997665 3689999999999999854 999998755421 000 0
Q ss_pred HHHHhcccccccCccccccccccCch----hHHHHhhhccc
Q 044354 232 AAAALNSREAEHQSPQRGFHNNVRTR----SMRSSATSSGD 268 (426)
Q Consensus 232 ~~~~~~~~~~~~~~pc~gC~~~i~~~----~lR~H~~~c~~ 268 (426)
..-..+.-.....-|..|+...+.. ..++|+++-..
T Consensus 229 -~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H 268 (493)
T KOG0804|consen 229 -SLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGH 268 (493)
T ss_pred -hhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcc
Confidence 0001122334456778888876653 37788877663
No 52
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.00073 Score=65.54 Aligned_cols=62 Identities=29% Similarity=0.664 Sum_probs=41.1
Q ss_pred cccccccccCCC-Ccee-ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChh
Q 044354 158 ELSCAICLEICF-EPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQ 225 (426)
Q Consensus 158 ~l~CpIC~~~l~-~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~ 225 (426)
...|..|..-.. +|.. +.|+|+||..|..... ...||.|++++.. +.++..|...|..||..
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~---i~l~~slp~~ik~~F~d 66 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRI---IQLNRSLPTDIKSYFAD 66 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeee---eecccccchhHHHHccC
Confidence 357888877554 3333 6899999999986543 2389999998663 33444455555555543
No 53
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0021 Score=63.89 Aligned_cols=64 Identities=28% Similarity=0.582 Sum_probs=49.0
Q ss_pred ccccccccCCC------CceeccCCCcchhhhHHhhhhhcCCCCccccccc--cC--CCCcchhHHHHHHHHHH
Q 044354 159 LSCAICLEICF------EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLI--SN--GRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 159 l~CpIC~~~l~------~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i--~~--~~~l~~N~~L~~lI~~l 222 (426)
+.|-||.+.|. .|..+.|||+||..|+...+......||.||.+. .. ...+..|..+..+++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 67999999875 3666889999999999999988778899999984 22 12355566666666554
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0016 Score=66.23 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=41.8
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
++-.||||..-..+.|..||+|.-|..||.+.+.+ .+.|-+|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 45789999998889999999999999999999877 678999988766
No 55
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0049 Score=63.91 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=35.1
Q ss_pred cccccccccccCCCCc---eeccCCCcchhhhHHhhhhhc-------CCCCcccccc
Q 044354 156 REELSCAICLEICFEP---STTTCGHSFCKKCLRSAADKC-------GKKCPKCRQL 202 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P---v~lpCgH~FC~~CI~~~l~~~-------~~~CP~CR~~ 202 (426)
...+.|.||++..... +.+||+|.||..|+..++... ..+||-|...
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3458999999977653 447999999999999986531 2468876543
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.41 E-value=0.0021 Score=63.35 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=44.1
Q ss_pred cccccccccccCCCCc---e-eccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHH
Q 044354 156 REELSCAICLEICFEP---S-TTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTV 214 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P---v-~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~ 214 (426)
...|.|||+...|..- | +.+|||+|+..||.... ....||+|..+|...+.+.+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCC
Confidence 4568999999988532 2 24899999999999884 35689999999997766665533
No 57
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.34 E-value=0.0015 Score=51.98 Aligned_cols=47 Identities=34% Similarity=0.740 Sum_probs=23.5
Q ss_pred cccccccccCCC-C---cee----ccCCCcchhhhHHhhhhhc--C--------CCCcccccccc
Q 044354 158 ELSCAICLEICF-E---PST----TTCGHSFCKKCLRSAADKC--G--------KKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~-~---Pv~----lpCgH~FC~~CI~~~l~~~--~--------~~CP~CR~~i~ 204 (426)
++.|+||...+. . |+. ..|++.|...||..|+... . ..||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 368999998765 2 333 2699999999999997631 1 25999999876
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0021 Score=62.53 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=42.3
Q ss_pred ccccccccccCCCCcee----ccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 157 EELSCAICLEICFEPST----TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
..+.||||.+.+.+.+. -+|||+||..|+..++.. ...||+|..++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccc
Confidence 45899999999987643 489999999999998876 678999999888644
No 59
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.26 E-value=0.0022 Score=48.85 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=37.8
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
....|-.|...-...++++|||..|..|+.-+- -+.||+|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCcccC
Confidence 446788888888888999999999999986544 3489999998874
No 60
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0029 Score=65.41 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=37.9
Q ss_pred ccccccccccCCCCc-----eeccCCCcchhhhHHhhhhhc-CCCCcccccccc
Q 044354 157 EELSCAICLEICFEP-----STTTCGHSFCKKCLRSAADKC-GKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P-----v~lpCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~ 204 (426)
...+||||++-+.-| +.+.|||.|-..||+.|+.+. ...||.|...-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 346899999998877 346899999999999999532 247999976533
No 61
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0017 Score=64.01 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=37.4
Q ss_pred cccccccccCCCC----------ceeccCCCcchhhhHHhhhhhc-CCCCccccccccC
Q 044354 158 ELSCAICLEICFE----------PSTTTCGHSFCKKCLRSAADKC-GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~----------Pv~lpCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~~ 205 (426)
+-.|.||..-+.. ...+.|+|.|...||..|.-.+ ..+||.|+..+..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4679999886543 3458999999999999997543 4589999887653
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0012 Score=65.63 Aligned_cols=42 Identities=38% Similarity=0.828 Sum_probs=35.6
Q ss_pred cccccccccCCCCceeccCCC-cchhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICFEPSTTTCGH-SFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH-~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
...|.||++...+.+.|+||| .-|..|-+.+ ..||+||+.|.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHH
Confidence 578999999999999999999 4588886553 38999998765
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0075 Score=60.02 Aligned_cols=46 Identities=24% Similarity=0.771 Sum_probs=37.7
Q ss_pred ccccccc-CCCCcee----ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 160 SCAICLE-ICFEPST----TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 160 ~CpIC~~-~l~~Pv~----lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.||+|.. .+.+|-. -+|+|..|.+|+...+..+...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5999976 5566633 28999999999999999988999999877653
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.87 E-value=0.008 Score=44.65 Aligned_cols=41 Identities=24% Similarity=0.614 Sum_probs=32.4
Q ss_pred ccccccc--CCCCceeccCC-----CcchhhhHHhhhhhc-CCCCcccc
Q 044354 160 SCAICLE--ICFEPSTTTCG-----HSFCKKCLRSAADKC-GKKCPKCR 200 (426)
Q Consensus 160 ~CpIC~~--~l~~Pv~lpCg-----H~FC~~CI~~~l~~~-~~~CP~CR 200 (426)
.|-||++ .-.+|.+.||. |.|...|+..|+... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 44567778985 789999999999764 45799994
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0037 Score=63.83 Aligned_cols=45 Identities=31% Similarity=0.687 Sum_probs=35.9
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
.....|.||.+-.++.+.+||||..| |..-... ...||+||..|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 34478999999999999999999977 7654433 356999998765
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.81 E-value=0.0043 Score=68.91 Aligned_cols=53 Identities=32% Similarity=0.733 Sum_probs=42.3
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcC-CCCccccccccC
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCG-KKCPKCRQLISN 205 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~-~~CP~CR~~i~~ 205 (426)
+..+...+.|.||.+ ...++.+.|+|.||..|+...+.... ..||.|+..+..
T Consensus 448 i~~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 448 IVDLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred HHHHhhccccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 334444489999999 88899999999999999999876543 369999876653
No 67
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0037 Score=67.70 Aligned_cols=61 Identities=26% Similarity=0.567 Sum_probs=42.6
Q ss_pred hcccccccccccCCC----CceeccCCCcchhhhHHhhhhhcCCCCcccccc----ccCCCCcchhHHHHHHH
Q 044354 155 LREELSCAICLEICF----EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQL----ISNGRSCTVNTVLWNTI 219 (426)
Q Consensus 155 l~~~l~CpIC~~~l~----~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~----i~~~~~l~~N~~L~~lI 219 (426)
+.+.+.|+||+..|. .||.+-|||+.|..|+...... .|| |... +...+....|+.|..++
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcchhHHHHHhh
Confidence 556689999988774 6889999999999999987744 788 4321 22223455566655554
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0049 Score=63.46 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=33.9
Q ss_pred ccccccccCCCCcee---c-cCCCcchhhhHHhhhhhcCC--CCcccccccc
Q 044354 159 LSCAICLEICFEPST---T-TCGHSFCKKCLRSAADKCGK--KCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~---l-pCgH~FC~~CI~~~l~~~~~--~CP~CR~~i~ 204 (426)
-.|.||.+.+..--- + .|||+|...|+..|+....+ .||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 479999665543222 3 49999999999999976443 7999984444
No 69
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.65 E-value=0.0092 Score=60.22 Aligned_cols=107 Identities=16% Similarity=0.246 Sum_probs=73.2
Q ss_pred hcccccccccccCCCCcee-ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHH------
Q 044354 155 LREELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEV------ 227 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~------ 227 (426)
+-+.+.||||.+.+..|+. -+=||..|..|-.+. ...||.|+.++... .+..+..+++..+-.-.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~~----R~~amEkV~e~~~vpC~~~~~GC 116 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGNI----RCRAMEKVAEAVLVPCKNAKLGC 116 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCccccccccH----HHHHHHHHHHhceecccccccCC
Confidence 3356899999999999964 345899999997632 46899999999843 36667777766431110
Q ss_pred -----HHHHHHHHhcccccccCcccc--ccccccCchhHHHHhhhcccc
Q 044354 228 -----EARKAAAALNSREAEHQSPQR--GFHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 228 -----~~r~~~~~~~~~~~~~~~pc~--gC~~~i~~~~lR~H~~~c~~~ 269 (426)
...+..++..+......+|+. .|+..-....+-.|+..--++
T Consensus 117 ~~~~~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~ 165 (299)
T KOG3002|consen 117 TKSFPYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKS 165 (299)
T ss_pred ceeeccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChh
Confidence 111234444455566666777 888887778888888777544
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.64 E-value=0.008 Score=44.66 Aligned_cols=43 Identities=30% Similarity=0.764 Sum_probs=22.3
Q ss_pred ccccccCCCC--ceec--cCCCcchhhhHHhhhhhcCCCCccccccc
Q 044354 161 CAICLEICFE--PSTT--TCGHSFCKKCLRSAADKCGKKCPKCRQLI 203 (426)
Q Consensus 161 CpIC~~~l~~--Pv~l--pCgH~FC~~CI~~~l~~~~~~CP~CR~~i 203 (426)
||+|.+.+.. -..+ +||+-+|..|+...+......||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889887732 1223 58999999999998876678999999864
No 71
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.52 E-value=0.011 Score=48.31 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=26.9
Q ss_pred cCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 175 TCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.|.|.|...||.+|+.. ...||+|++.+..
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 59999999999999988 7789999998763
No 72
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.41 E-value=0.0051 Score=69.13 Aligned_cols=50 Identities=32% Similarity=0.665 Sum_probs=38.4
Q ss_pred hcccccccccccCCC-----Ccee--ccCCCcchhhhHHhhhhhc-CCCCcccccccc
Q 044354 155 LREELSCAICLEICF-----EPST--TTCGHSFCKKCLRSAADKC-GKKCPKCRQLIS 204 (426)
Q Consensus 155 l~~~l~CpIC~~~l~-----~Pv~--lpCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~ 204 (426)
+...-.|+||..++. -|.. -.|.|-|+..|+.+|+... ...||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344568999998775 1222 3599999999999999764 468999998765
No 73
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.022 Score=58.94 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=39.1
Q ss_pred hcccccccccccCCC---CceeccCCCcchhhhHHhhhhhcC--CCCcccccc
Q 044354 155 LREELSCAICLEICF---EPSTTTCGHSFCKKCLRSAADKCG--KKCPKCRQL 202 (426)
Q Consensus 155 l~~~l~CpIC~~~l~---~Pv~lpCgH~FC~~CI~~~l~~~~--~~CP~CR~~ 202 (426)
+...|.|||=.+--. .|+.+.|||+.|..-+.++..++. ++||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 455689999776553 578899999999999999988776 899999544
No 74
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.24 E-value=0.018 Score=63.54 Aligned_cols=53 Identities=38% Similarity=0.723 Sum_probs=43.0
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhh--cCCCCcccccccc
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKCRQLIS 204 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~--~~~~CP~CR~~i~ 204 (426)
+..+...+.|+||...++.|+.+.|.|.||..|+...+.. ....||+|+..+.
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3445567999999999999999999999999999876543 2457999986655
No 75
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.23 E-value=0.033 Score=49.73 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=42.3
Q ss_pred ccccccccccCCCCceecc----CCCcchhhhHHhhhhhcC--CCCccccccccCC
Q 044354 157 EELSCAICLEICFEPSTTT----CGHSFCKKCLRSAADKCG--KKCPKCRQLISNG 206 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lp----CgH~FC~~CI~~~l~~~~--~~CP~CR~~i~~~ 206 (426)
..+.|.||.+...+...|. ||-..|..|...+|+... ..||+|+..+.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4589999999998887763 999999999999887643 6899999998864
No 76
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.08 E-value=0.068 Score=49.10 Aligned_cols=91 Identities=21% Similarity=0.385 Sum_probs=55.4
Q ss_pred cccccccccCCCCceeccCC-------Ccch------hhhHHhhhhh------------------------------cCC
Q 044354 158 ELSCAICLEICFEPSTTTCG-------HSFC------KKCLRSAADK------------------------------CGK 194 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCg-------H~FC------~~CI~~~l~~------------------------------~~~ 194 (426)
+..||||++...+.|.|-|. ...| ..|+.++.+. ...
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 57899999999999987442 2233 3566655221 023
Q ss_pred CCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHHHHhcccccccCccccccccccCchhHHHHhhhccccc
Q 044354 195 KCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAAALNSREAEHQSPQRGFHNNVRTRSMRSSATSSGDAT 270 (426)
Q Consensus 195 ~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~~~~~~~~~~~~~pc~gC~~~i~~~~lR~H~~~c~~~~ 270 (426)
.||+||..|.....+ +. +++-. +...-.+...+|.-.-.-.+|+.|....-...
T Consensus 82 ~CPLCRG~V~GWtvv----------------e~-AR~~L-----N~K~RsC~~e~C~F~GtY~eLrKHar~~HP~~ 135 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV----------------EP-ARRFL-----NAKKRSCSQESCSFSGTYSELRKHARSEHPSA 135 (162)
T ss_pred cCccccCceeceEEc----------------hH-HHHHh-----ccCCccCcccccccccCHHHHHHHHHhhCCCC
Confidence 699999998853321 11 11100 11122345667777777788999998776553
No 77
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.023 Score=46.14 Aligned_cols=30 Identities=30% Similarity=0.644 Sum_probs=25.3
Q ss_pred cCCCcchhhhHHhhhhhc--CCCCcccccccc
Q 044354 175 TCGHSFCKKCLRSAADKC--GKKCPKCRQLIS 204 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~~--~~~CP~CR~~i~ 204 (426)
-|.|.|...||.+|+... ...||+||+.+.
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 499999999999998653 357999998765
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.79 E-value=0.02 Score=59.18 Aligned_cols=48 Identities=35% Similarity=0.785 Sum_probs=37.6
Q ss_pred ccccccccccCCC-Cc---eeccCCCcchhhhHHhhhhhcC-CCCcccccccc
Q 044354 157 EELSCAICLEICF-EP---STTTCGHSFCKKCLRSAADKCG-KKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~-~P---v~lpCgH~FC~~CI~~~l~~~~-~~CP~CR~~i~ 204 (426)
-.+.|..|.+.+- .| -.+||.|+|...|+.+++.++. ..||.|++...
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3589999999773 33 2379999999999999986643 57999996544
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.06 Score=54.61 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=39.9
Q ss_pred cccccccccccCCCCceecc-CCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
.+.-.||||+....+|..+. -|-.||..||..++.+ ...||+-..+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 35578999999999998765 5999999999999985 779998766544
No 80
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.55 E-value=0.053 Score=60.80 Aligned_cols=47 Identities=30% Similarity=0.692 Sum_probs=36.9
Q ss_pred cccccccccccCCC--Ccee--ccCCCcchhhhHHhhhhh------cCCCCcccccc
Q 044354 156 REELSCAICLEICF--EPST--TTCGHSFCKKCLRSAADK------CGKKCPKCRQL 202 (426)
Q Consensus 156 ~~~l~CpIC~~~l~--~Pv~--lpCgH~FC~~CI~~~l~~------~~~~CP~CR~~ 202 (426)
...+.|-||.+.+. .|+. ..|.|+|...||..|... ..+.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 35689999999775 4544 369999999999999764 24789999843
No 81
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.34 E-value=0.029 Score=54.67 Aligned_cols=47 Identities=21% Similarity=0.754 Sum_probs=36.9
Q ss_pred ccccccccc-CCCCcee----cc-CCCcchhhhHHhhhhhcCCCCc--ccccccc
Q 044354 158 ELSCAICLE-ICFEPST----TT-CGHSFCKKCLRSAADKCGKKCP--KCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~-~l~~Pv~----lp-CgH~FC~~CI~~~l~~~~~~CP--~CR~~i~ 204 (426)
+-.||||.. .+-+|-+ -| |-|..|.+|+.+.+..+...|| -|.+.+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 358999976 4556632 24 9999999999999999888999 7866543
No 82
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.88 E-value=0.061 Score=62.69 Aligned_cols=59 Identities=25% Similarity=0.593 Sum_probs=49.1
Q ss_pred CCcchhhhhhhcccccccccccCCC-CceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 145 SSSVLTCIDKLREELSCAICLEICF-EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 145 ~~~~~~~l~~l~~~l~CpIC~~~l~-~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..+....+..+.....|+||++++. .-.+..|||.||..|+..|+.. ...||.|.....
T Consensus 1140 ~es~~~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1140 TESDVRYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhhh
Confidence 3455666677778889999999998 6677899999999999999987 789999975544
No 83
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.78 E-value=0.08 Score=39.51 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred ccccccccCCCCcee-ccCCCcchhhh---HHhhhhhcCCCCcccccc
Q 044354 159 LSCAICLEICFEPST-TTCGHSFCKKC---LRSAADKCGKKCPKCRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~-lpCgH~FC~~C---I~~~l~~~~~~CP~CR~~ 202 (426)
+.|||....+..|+. ..|.|.-|.+= |........+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999998 57999877543 222233345789999763
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.75 E-value=0.069 Score=54.53 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=38.0
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhh--hhhcCCCCcccccc
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSA--ADKCGKKCPKCRQL 202 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~--l~~~~~~CP~CR~~ 202 (426)
++...|.||..-+.-...+||+|..|.-|..+. +.. .+.||+|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 355789999998888888999999999998765 333 5789999875
No 85
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.073 Score=45.62 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=25.4
Q ss_pred cCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 175 TCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
.|.|.|...||..|++. ...||+|.+...
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCccee
Confidence 59999999999999998 778999987643
No 86
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.21 Score=48.45 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=41.5
Q ss_pred hhhhcccccccccccCCC--CceeccCCCcchhhhHHhhhhh-------cCCCCccccccccC
Q 044354 152 IDKLREELSCAICLEICF--EPSTTTCGHSFCKKCLRSAADK-------CGKKCPKCRQLISN 205 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~--~Pv~lpCgH~FC~~CI~~~l~~-------~~~~CP~CR~~i~~ 205 (426)
+.+-...-.|..|...+. +.+.+.|.|.|...|+.+|..+ .+..||.|...|..
T Consensus 44 L~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 44 LQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred HhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 334445568999999886 4566899999999999999653 24689999887764
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.02 E-value=0.064 Score=44.79 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=26.3
Q ss_pred hcccccccccccCCCCcee--ccCCCcchhhhHH
Q 044354 155 LREELSCAICLEICFEPST--TTCGHSFCKKCLR 186 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~ 186 (426)
+.+.-.|++|...+.+.+. .||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456789999998887654 6999999999975
No 88
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.78 E-value=0.14 Score=52.15 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=35.6
Q ss_pred ccccccccCCCC--ceec--cCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 159 LSCAICLEICFE--PSTT--TCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 159 l~CpIC~~~l~~--Pv~l--pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
-.||+|++.+.. --.. +||-..|.-|+......-...||.||..+...
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 349999997642 2333 68888899999887666567899999877653
No 89
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.39 E-value=0.25 Score=58.33 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=36.3
Q ss_pred cccccccccccCC--CCc-eeccCCCcchhhhHHhhhhhcC---------CCCcccccccc
Q 044354 156 REELSCAICLEIC--FEP-STTTCGHSFCKKCLRSAADKCG---------KKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l--~~P-v~lpCgH~FC~~CI~~~l~~~~---------~~CP~CR~~i~ 204 (426)
..+-.|-||+..- ..| +.+.|+|.|...|....+.+.. ..||+|..+|.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456799998632 233 5689999999999988766531 37999988877
No 90
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=0.2 Score=52.41 Aligned_cols=47 Identities=30% Similarity=0.779 Sum_probs=31.2
Q ss_pred cccccccc-cCCCCce---eccCCCcchhhhHHhhhhhc-----CCCCcc--cccccc
Q 044354 158 ELSCAICL-EICFEPS---TTTCGHSFCKKCLRSAADKC-----GKKCPK--CRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~-~~l~~Pv---~lpCgH~FC~~CI~~~l~~~-----~~~CP~--CR~~i~ 204 (426)
...|.||. +...... +..|+|.||..|+...+... ...||. |...+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 46899999 4433212 35699999999999887632 346764 444444
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=0.11 Score=58.51 Aligned_cols=40 Identities=35% Similarity=0.732 Sum_probs=34.5
Q ss_pred cccccccccCCCCcee-ccCCCcchhhhHHhhhhhcCCCCccccc
Q 044354 158 ELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
.-.|..|...+.-|++ ..|||.|...|+. .+...||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3689999999999977 7899999999998 33578999976
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=0.09 Score=53.01 Aligned_cols=43 Identities=30% Similarity=0.609 Sum_probs=29.2
Q ss_pred ccccccccCCC-CceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICF-EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~-~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..|--|-..+. --.++||.|.||.+|...-- .+.||.|-..|.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHHH
Confidence 45666655332 23457999999999986433 458999976554
No 93
>PHA03096 p28-like protein; Provisional
Probab=89.72 E-value=0.17 Score=50.94 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=29.7
Q ss_pred ccccccccCCC-Cce-------eccCCCcchhhhHHhhhhhc--CCCCccccc
Q 044354 159 LSCAICLEICF-EPS-------TTTCGHSFCKKCLRSAADKC--GKKCPKCRQ 201 (426)
Q Consensus 159 l~CpIC~~~l~-~Pv-------~lpCgH~FC~~CI~~~l~~~--~~~CP~CR~ 201 (426)
..|.||++... .+. ...|.|.||..|+..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999554 322 23699999999999997543 234555544
No 94
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=0.25 Score=48.52 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=32.2
Q ss_pred hhcccccccccccCCCCceeccCCCcchhhhHHhhhh
Q 044354 154 KLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD 190 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~ 190 (426)
.+.+...|.+|+..+.+||+++=||.||..||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3455678899999999999999999999999988754
No 95
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=0.32 Score=46.73 Aligned_cols=50 Identities=28% Similarity=0.545 Sum_probs=35.8
Q ss_pred hhhhhcccccccccccCCCCceeccCCC-cchhhhHHhhhhhcCCCCccccccccC
Q 044354 151 CIDKLREELSCAICLEICFEPSTTTCGH-SFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~lpCgH-~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.++.+...-.|-+|...-..-+.+||.| .+|..|-.. ...||+|+.+...
T Consensus 151 ~~~~~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 151 SVDNFKRMRSCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred hhhhhhccccceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 3333333334999999888877789998 689999654 2369999887654
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.41 E-value=0.47 Score=47.49 Aligned_cols=45 Identities=29% Similarity=0.754 Sum_probs=36.7
Q ss_pred cccccccccCCC----CceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICF----EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~----~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
...||||.+.+. .|..++|||.....|+......+ ..||+|.+ +.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~-~~ 206 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK-PG 206 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc-hH
Confidence 356999998664 45568999999999999988775 99999988 44
No 97
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.20 E-value=0.39 Score=48.68 Aligned_cols=48 Identities=27% Similarity=0.646 Sum_probs=37.3
Q ss_pred hhcccccccccccCCC---CceeccCCCcchhhhHHhhhhhc--CCCCccccc
Q 044354 154 KLREELSCAICLEICF---EPSTTTCGHSFCKKCLRSAADKC--GKKCPKCRQ 201 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~---~Pv~lpCgH~FC~~CI~~~l~~~--~~~CP~CR~ 201 (426)
.+...|.|||=.+... .|+.+.|||+.-..-+....+++ .++||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4556799999777554 57889999999998888776664 368999943
No 98
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.08 E-value=0.32 Score=48.61 Aligned_cols=34 Identities=29% Similarity=0.721 Sum_probs=30.2
Q ss_pred cccccccccCCCCceeccC----CCcchhhhHHhhhhh
Q 044354 158 ELSCAICLEICFEPSTTTC----GHSFCKKCLRSAADK 191 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpC----gH~FC~~CI~~~l~~ 191 (426)
-|.|.+|.+.|.+...+.| .|.||..|-.+.++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4899999999999988877 599999999988775
No 99
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.58 E-value=0.3 Score=43.84 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=26.3
Q ss_pred cccccccccCCCC--cee-ccCC------CcchhhhHHhhhh
Q 044354 158 ELSCAICLEICFE--PST-TTCG------HSFCKKCLRSAAD 190 (426)
Q Consensus 158 ~l~CpIC~~~l~~--Pv~-lpCg------H~FC~~CI~~~l~ 190 (426)
...|.||++.+.+ -|+ ++|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999998766 444 6776 6799999999953
No 100
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.72 E-value=0.92 Score=32.79 Aligned_cols=39 Identities=26% Similarity=0.703 Sum_probs=24.0
Q ss_pred ccccccCCCCceec---cCCCcchhhhHHhhhhhcCC-CCccc
Q 044354 161 CAICLEICFEPSTT---TCGHSFCKKCLRSAADKCGK-KCPKC 199 (426)
Q Consensus 161 CpIC~~~l~~Pv~l---pCgH~FC~~CI~~~l~~~~~-~CP~C 199 (426)
|.+|.++...-+.= .|+-.+...|+..++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 77899988887763 49988999999999876443 69987
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.17 E-value=0.48 Score=35.24 Aligned_cols=44 Identities=23% Similarity=0.656 Sum_probs=24.4
Q ss_pred ccccccccCCCCceeccCC-CcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFEPSTTTCG-HSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCg-H~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+.|.-|.-..+ -.+.|. |..|..|+.-++.. +..||+|..+++.
T Consensus 3 ~nCKsCWf~~k--~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFANK--GLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S--S--SEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred ccChhhhhcCC--CeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 34555554333 345675 88999999988876 7789999988763
No 102
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.91 E-value=0.36 Score=48.63 Aligned_cols=48 Identities=31% Similarity=0.599 Sum_probs=34.9
Q ss_pred cccccccccCCC-Cc--eeccCCCcchhhhHHhhhhh----------------------cCCCCccccccccC
Q 044354 158 ELSCAICLEICF-EP--STTTCGHSFCKKCLRSAADK----------------------CGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~-~P--v~lpCgH~FC~~CI~~~l~~----------------------~~~~CP~CR~~i~~ 205 (426)
.-.|.||+-=|. .| +.++|.|.|...|+.+++.. -...||+|+..|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 467999998664 44 34789999999999876331 02369999987764
No 103
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.29 E-value=1 Score=44.44 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=42.0
Q ss_pred cccccccccccCCCCcee----ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhH
Q 044354 156 REELSCAICLEICFEPST----TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNT 213 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~ 213 (426)
...|+|||-.-.|..-.. .+|||.|-..-+++.. ...|++|...+...+.+.+|-
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCC
Confidence 356899998777765433 4899999988877655 458999999998877666653
No 104
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=1.2 Score=41.92 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=34.6
Q ss_pred cccccccccccCCCCcee-------ccCCCcchhhhHHhhhhhc-----C-----CCCcccccccc
Q 044354 156 REELSCAICLEICFEPST-------TTCGHSFCKKCLRSAADKC-----G-----KKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~-------lpCgH~FC~~CI~~~l~~~-----~-----~~CP~CR~~i~ 204 (426)
+...-|.||..+--+-.. ..||..|..-|+..|+..- + ..||.|-.++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 344568888765433222 4699999999999997631 1 36999988876
No 105
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=79.13 E-value=1.9 Score=43.13 Aligned_cols=90 Identities=16% Similarity=0.303 Sum_probs=59.4
Q ss_pred cccccccccccCCCCc---------eeccCCCcchhhhHH-hhhhhc---------CCCCccccccccCCCCcchhHHHH
Q 044354 156 REELSCAICLEICFEP---------STTTCGHSFCKKCLR-SAADKC---------GKKCPKCRQLISNGRSCTVNTVLW 216 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P---------v~lpCgH~FC~~CI~-~~l~~~---------~~~CP~CR~~i~~~~~l~~N~~L~ 216 (426)
...+.|++|-..|..- -.|+|...||.+=+. .|+-++ .+.||.|.+.|..... |.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSN------LR 232 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSN------LR 232 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHH------HH
Confidence 3458899999877642 236888888887765 565442 3689999998885321 22
Q ss_pred HHHHHHChhHHHHHHHHHHhcccccccCccccccccccCchh-HHHHhhhccc
Q 044354 217 NTIQLLFPQEVEARKAAAALNSREAEHQSPQRGFHNNVRTRS-MRSSATSSGD 268 (426)
Q Consensus 217 ~lI~~l~p~E~~~r~~~~~~~~~~~~~~~pc~gC~~~i~~~~-lR~H~~~c~~ 268 (426)
.-++- ........|..|++.+.+.. |-.|.+..+.
T Consensus 233 AHmQT-----------------HS~~K~~qC~~C~KsFsl~SyLnKH~ES~C~ 268 (279)
T KOG2462|consen 233 AHMQT-----------------HSDVKKHQCPRCGKSFALKSYLNKHSESACL 268 (279)
T ss_pred HHHHh-----------------hcCCccccCcchhhHHHHHHHHHHhhhhccc
Confidence 11111 12333678999999988876 7788877663
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.46 E-value=1.3 Score=49.81 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=34.2
Q ss_pred cccccccccCCCCcee----cc---CCCcchhhhHHhhhhhc-----CCCCccccccccC
Q 044354 158 ELSCAICLEICFEPST----TT---CGHSFCKKCLRSAADKC-----GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~----lp---CgH~FC~~CI~~~l~~~-----~~~CP~CR~~i~~ 205 (426)
...|+||..-+.+|+- .+ |+|.||..||..|.+.- ...|++|...|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3567777777776542 34 99999999999997641 2358888776553
No 107
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=75.61 E-value=2.2 Score=47.50 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=45.9
Q ss_pred hhcccccccccccCCCCcee-ccCCCcchhhhHHhhhh---hcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 154 KLREELSCAICLEICFEPST-TTCGHSFCKKCLRSAAD---KCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
.+.-.|.|||+...+.-|.. ..|.|.-|.+=..-... ...+.||+|.+.+.. ..+.++..+.+++..+
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL~~~ 373 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNILQSC 373 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc-cchhhhHHHHHHHhhc
Confidence 35566999999988877765 56888766654422211 234689999887763 4567777777777665
No 108
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.43 E-value=1.6 Score=46.33 Aligned_cols=35 Identities=29% Similarity=0.675 Sum_probs=29.6
Q ss_pred ccccccccccCCCC-ceeccCCCcchhhhHHhhhhh
Q 044354 157 EELSCAICLEICFE-PSTTTCGHSFCKKCLRSAADK 191 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-Pv~lpCgH~FC~~CI~~~l~~ 191 (426)
....|.||.+.+.. .+.+.|||.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45889999998886 566799999999999998764
No 109
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=75.24 E-value=0.33 Score=38.91 Aligned_cols=40 Identities=25% Similarity=0.588 Sum_probs=23.0
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+.||.|...|..-- +|.+|..|-..+.. ...||.|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee--cccCCCcccHHH
Confidence 67999998754322 78889999876543 357999988765
No 110
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.09 E-value=3 Score=38.54 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=34.3
Q ss_pred ccccccccccCCCCceeccCCC-----cchhhhHHhhhhhc-CCCCcccccccc
Q 044354 157 EELSCAICLEICFEPSTTTCGH-----SFCKKCLRSAADKC-GKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH-----~FC~~CI~~~l~~~-~~~CP~CR~~i~ 204 (426)
.+..|-||.+-.. +...||.. .....|+..|+... ...|+.|...+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3468999998754 34457664 34899999999764 457999987654
No 111
>PHA02862 5L protein; Provisional
Probab=73.17 E-value=2.8 Score=38.30 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=34.1
Q ss_pred ccccccccCCCCceeccCCC-----cchhhhHHhhhhhc-CCCCccccccccC
Q 044354 159 LSCAICLEICFEPSTTTCGH-----SFCKKCLRSAADKC-GKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH-----~FC~~CI~~~l~~~-~~~CP~CR~~i~~ 205 (426)
-.|=||++.-.+. .-||.. .....|+.+|+... ...|++|+.++.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3699999976544 467764 46899999999653 3579999987653
No 112
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=72.64 E-value=3 Score=32.07 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=30.2
Q ss_pred ccccccccCCCCce--eccCC--CcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFEPS--TTTCG--HSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~Pv--~lpCg--H~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
-.|-.|...+..-. ..-|. .+||..|....+. ..||.|...+..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 35777766554322 23343 4899999999884 499999887764
No 113
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.92 E-value=2.9 Score=30.64 Aligned_cols=39 Identities=33% Similarity=0.671 Sum_probs=24.3
Q ss_pred ccccccCCC--CceeccCCC-----cchhhhHHhhhhh-cCCCCccc
Q 044354 161 CAICLEICF--EPSTTTCGH-----SFCKKCLRSAADK-CGKKCPKC 199 (426)
Q Consensus 161 CpIC~~~l~--~Pv~lpCgH-----~FC~~CI~~~l~~-~~~~CP~C 199 (426)
|-||++... .|.+.||.- .....|+..|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 668887544 256778763 4578999999875 34579887
No 114
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=68.93 E-value=3 Score=43.32 Aligned_cols=30 Identities=23% Similarity=0.603 Sum_probs=22.5
Q ss_pred CCCcchhhhHHhhhhhc------------CCCCccccccccC
Q 044354 176 CGHSFCKKCLRSAADKC------------GKKCPKCRQLISN 205 (426)
Q Consensus 176 CgH~FC~~CI~~~l~~~------------~~~CP~CR~~i~~ 205 (426)
|....|..|+-+|+... ...||.||+.|.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 44567999999996532 3579999998763
No 115
>PLN03086 PRLI-interacting factor K; Provisional
Probab=68.20 E-value=9.9 Score=41.89 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=19.9
Q ss_pred ccCccccccccccCchhHHHHhhhc
Q 044354 242 EHQSPQRGFHNNVRTRSMRSSATSS 266 (426)
Q Consensus 242 ~~~~pc~gC~~~i~~~~lR~H~~~c 266 (426)
.....|..|++.|.+.+|..|...|
T Consensus 539 ~rt~~C~~Cgk~Vrlrdm~~H~~~~ 563 (567)
T PLN03086 539 SRTAPCDSCGRSVMLKEMDIHQIAV 563 (567)
T ss_pred CcceEccccCCeeeehhHHHHHHHh
Confidence 3446888899999998888888766
No 116
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=65.73 E-value=0.72 Score=48.50 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=58.7
Q ss_pred hhhhcccccccccccCCCCceec---cCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHH-------
Q 044354 152 IDKLREELSCAICLEICFEPSTT---TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQL------- 221 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~l---pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~------- 221 (426)
+.....++.|-+|...|.++..| .|-. |.. -...||-|-+.|+..- |..-..-+.+
T Consensus 261 i~n~iGdyiCqLCK~kYeD~F~LAQHrC~R------IV~----vEYrCPEC~KVFsCPA----NLASHRRWHKPR~eaa~ 326 (500)
T KOG3993|consen 261 IPNVIGDYICQLCKEKYEDAFALAQHRCPR------IVH----VEYRCPECDKVFSCPA----NLASHRRWHKPRPEAAK 326 (500)
T ss_pred CcccHHHHHHHHHHHhhhhHHHHhhccCCe------eEE----eeecCCcccccccCch----hhhhhhcccCCchhhhh
Confidence 44455679999999999999776 3543 221 1458999988876421 2111110100
Q ss_pred --HChhH--HHHHHH---HHHhcccccccCccccccccccCchh-HHHHhhhcccc
Q 044354 222 --LFPQE--VEARKA---AAALNSREAEHQSPQRGFHNNVRTRS-MRSSATSSGDA 269 (426)
Q Consensus 222 --l~p~E--~~~r~~---~~~~~~~~~~~~~pc~gC~~~i~~~~-lR~H~~~c~~~ 269 (426)
--|.. ...+.+ .....++...-...|..|++++.... |+.|...|-..
T Consensus 327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 00100 111111 11122333444679999999998876 89998887765
No 117
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=65.67 E-value=3.9 Score=34.44 Aligned_cols=38 Identities=26% Similarity=0.712 Sum_probs=30.2
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
-.|-||...+..+ ||.||..|... ...|.+|.+.+...
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~dt 82 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILDT 82 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-----cCcccccCCeeccc
Confidence 4799999877765 88999999653 45899999887543
No 118
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.94 E-value=5.8 Score=32.54 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=21.2
Q ss_pred cccccccccCCC-----Ccee--ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 158 ELSCAICLEICF-----EPST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~-----~Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.-.|.||.+.+- ++.+ ..|+-..|..|+.--.+.+...||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 357999998653 2222 25888899999986667767889999977663
No 119
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.37 E-value=8.8 Score=31.12 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=29.4
Q ss_pred cccccccCCCC----ceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 160 SCAICLEICFE----PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 160 ~CpIC~~~l~~----Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
.|-.|-..+.. ..+-.-.|+||..|....+. ..||.|...+...
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcC
Confidence 46566554432 22223457999999998774 4899999887743
No 120
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.70 E-value=1.6 Score=43.47 Aligned_cols=44 Identities=34% Similarity=0.737 Sum_probs=35.6
Q ss_pred ccccccccCCC------Cceecc--------CCCcchhhhHHhhhhhcCCCCcccccc
Q 044354 159 LSCAICLEICF------EPSTTT--------CGHSFCKKCLRSAADKCGKKCPKCRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~------~Pv~lp--------CgH~FC~~CI~~~l~~~~~~CP~CR~~ 202 (426)
..|.||...+. .|.++. |||+.|..|+...+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56999988776 244456 999999999999987766899999864
No 121
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.40 E-value=5 Score=40.59 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=24.0
Q ss_pred CCCcchhhhHHhhhhh------------cCCCCccccccccCCC
Q 044354 176 CGHSFCKKCLRSAADK------------CGKKCPKCRQLISNGR 207 (426)
Q Consensus 176 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~i~~~~ 207 (426)
|....|.+|+-.|+.. ++..||.||+.+.-.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5667899999998532 3468999999876543
No 122
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=59.69 E-value=2.1 Score=42.77 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccccccccCCCCceecc-----CCCcchhhhHHhhhhhcCCCCcccccc
Q 044354 159 LSCAICLEICFEPSTTT-----CGHSFCKKCLRSAADKCGKKCPKCRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lp-----CgH~FC~~CI~~~l~~~~~~CP~CR~~ 202 (426)
-.||||.....-.++.. -.|.+|.-|-..|-.. ...||.|...
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 68999998665444432 2467899999999765 6789999654
No 123
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=58.93 E-value=7.5 Score=34.93 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=18.9
Q ss_pred hhHHHHHHhhHHHHHHHhcccc
Q 044354 373 DDAVLALRLQREEFMEAFMGTR 394 (426)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~ 394 (426)
+|.+|||+||=+|+-.-|-+.-
T Consensus 25 EDgaLA~~LQeqEIe~hy~~N~ 46 (132)
T PF15295_consen 25 EDGALAHRLQEQEIEHHYASNR 46 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 7999999999999988886543
No 124
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.30 E-value=5 Score=45.88 Aligned_cols=37 Identities=30% Similarity=0.547 Sum_probs=28.7
Q ss_pred hhcccccccccccCC-CCce-eccCCCcchhhhHHhhhh
Q 044354 154 KLREELSCAICLEIC-FEPS-TTTCGHSFCKKCLRSAAD 190 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l-~~Pv-~lpCgH~FC~~CI~~~l~ 190 (426)
.++..-.|.+|...+ ..|. +.||||.|...||.....
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 455677899998844 4564 479999999999987654
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=57.96 E-value=3.1 Score=42.34 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=31.1
Q ss_pred cccccccccCCCCceecc----CC--CcchhhhHHhhhhhcCCCCccccc
Q 044354 158 ELSCAICLEICFEPSTTT----CG--HSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lp----Cg--H~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
.-.||||.....-.++.. =| |.+|.-|-..|-.. ..+||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 348999999765443322 23 56799999999765 679999975
No 126
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=4.8 Score=42.98 Aligned_cols=67 Identities=28% Similarity=0.498 Sum_probs=46.7
Q ss_pred hhccccccccc-ccCCCCceec--cCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 154 KLREELSCAIC-LEICFEPSTT--TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 154 ~l~~~l~CpIC-~~~l~~Pv~l--pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
.+.+++.|++| ...|.+..++ -|.-+||..||...+.. ..|+.|.+.-.....+..+..++..+...
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRI 284 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHH
Confidence 56678999999 7788877776 48999999999887653 46666655443344455566666655544
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=5.9 Score=41.53 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=30.2
Q ss_pred cccccccccccCCC-----CceeccCCCcchhhhHHhhhhhcCCCCccc
Q 044354 156 REELSCAICLEICF-----EPSTTTCGHSFCKKCLRSAADKCGKKCPKC 199 (426)
Q Consensus 156 ~~~l~CpIC~~~l~-----~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~C 199 (426)
.....||+|...+. +.++-.|||-||..|...|... +..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCc
Confidence 34678999988664 2344459999999999988765 3344433
No 128
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=51.75 E-value=11 Score=24.04 Aligned_cols=24 Identities=4% Similarity=-0.046 Sum_probs=21.1
Q ss_pred CccccccccccCchhHHHHhhhcc
Q 044354 244 QSPQRGFHNNVRTRSMRSSATSSG 267 (426)
Q Consensus 244 ~~pc~gC~~~i~~~~lR~H~~~c~ 267 (426)
..+|..|+..+....+..|...|.
T Consensus 2 l~~C~~CgR~F~~~~l~~H~~~C~ 25 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRLEKHEKICK 25 (25)
T ss_pred CCcCCCCCCEECHHHHHHHHHhcC
Confidence 468999999999999999998874
No 129
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=51.32 E-value=9.9 Score=43.30 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=37.4
Q ss_pred cccccccccc--CCCCceeccCCCc-----chhhhHHhhhhhc-CCCCccccccccC
Q 044354 157 EELSCAICLE--ICFEPSTTTCGHS-----FCKKCLRSAADKC-GKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~--~l~~Pv~lpCgH~-----FC~~CI~~~l~~~-~~~CP~CR~~i~~ 205 (426)
+.-.|-||.. .-.+|..-||.++ ...+|+.+|+..+ ..+|-.|..++.-
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 3468999975 5567888888763 5889999999754 4689999987653
No 130
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.38 E-value=6.1 Score=40.34 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=31.9
Q ss_pred ccccccccccCCCCcee-c--cCC--CcchhhhHHhhhhhcCCCCccccc
Q 044354 157 EELSCAICLEICFEPST-T--TCG--HSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-l--pCg--H~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
..-.||||.....-.++ + .=| |.+|.-|-..|-.. ..+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 45789999997654433 2 223 56799999999765 679999975
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.34 E-value=12 Score=38.47 Aligned_cols=46 Identities=30% Similarity=0.731 Sum_probs=34.7
Q ss_pred ccccccccCCC--Ccee--ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICF--EPST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~--~Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
-.||||.+.+. +-.. .+|++..|..|+...... ...||.|+++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc-CCCCCccCCcccc
Confidence 57999999763 2222 368999999999887665 6789999977653
No 132
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=47.62 E-value=17 Score=27.39 Aligned_cols=25 Identities=28% Similarity=0.784 Sum_probs=13.3
Q ss_pred cCCCcchhhhHHhhhhhcCCCCcccc
Q 044354 175 TCGHSFCKKCLRSAADKCGKKCPKCR 200 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~~~~~CP~CR 200 (426)
.|++.||..|=. ++...--.||-|-
T Consensus 26 ~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred CCCCccccCcCh-hhhccccCCcCCC
Confidence 589999999943 3333245799883
No 133
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.81 E-value=15 Score=43.02 Aligned_cols=61 Identities=16% Similarity=0.334 Sum_probs=36.2
Q ss_pred cccccccccCCCCceeccCCC-----cchhhhHHhhhhhcCCCCccccccccCCCC--cchhHHHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGH-----SFCKKCLRSAADKCGKKCPKCRQLISNGRS--CTVNTVLWNTIQL 221 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH-----~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~--l~~N~~L~~lI~~ 221 (426)
...|+-|.........-.||. .||..|-... ....||.|...+..... +.+...+...++.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~ 693 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYSKRKIDLKELYDRALEN 693 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccceEEecHHHHHHHHHHH
Confidence 357888887754433345874 5999994332 13579999888775332 3333344444443
No 134
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=46.75 E-value=11 Score=38.62 Aligned_cols=46 Identities=9% Similarity=-0.119 Sum_probs=35.9
Q ss_pred hcccccccccccCCCCceeccCCC-cchhhhHHhhhhhcCCCCccccccc
Q 044354 155 LREELSCAICLEICFEPSTTTCGH-SFCKKCLRSAADKCGKKCPKCRQLI 203 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH-~FC~~CI~~~l~~~~~~CP~CR~~i 203 (426)
+-..+.|-+|..-+...+..+|+| .||..|..-.. ...||.|....
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~---~~~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASA---SPTSSTCDHND 386 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhccc---CCccccccccc
Confidence 344578999999888888889999 68999987332 56999997643
No 135
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=45.84 E-value=2.6 Score=36.65 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=28.6
Q ss_pred cccccccccCCC---C-c-eeccCCCcchhhhHHhhhhhcCCCCccccc
Q 044354 158 ELSCAICLEICF---E-P-STTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 158 ~l~CpIC~~~l~---~-P-v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
...|.+|...|. + . +-..|+|.+|..|-........+.|-+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 468999987543 2 2 235799999999976632333457999965
No 136
>PLN02189 cellulose synthase
Probab=45.61 E-value=13 Score=43.55 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=34.2
Q ss_pred ccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..|.||.+.+-. +.+ -.|+--.|..|++--.+.++..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999997642 222 2477788999996555666778999998876
No 137
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=12 Score=39.73 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=20.6
Q ss_pred CCceeccCCCcchhhhHHhhhhhcCCCCccccc
Q 044354 169 FEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 169 ~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
..+|.-.|||.||..|...|-. ...|+.+..
T Consensus 177 ~~~v~C~~g~~FC~~C~~~~H~--p~~C~~~~~ 207 (444)
T KOG1815|consen 177 SVEVDCGCGHEFCFACGEESHS--PVSCPGAKK 207 (444)
T ss_pred ccceeCCCCchhHhhccccccC--CCcccchHH
Confidence 3445568999999999887643 235555533
No 138
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.49 E-value=16 Score=31.39 Aligned_cols=28 Identities=39% Similarity=0.841 Sum_probs=20.6
Q ss_pred CCcchhhhHHhhhhh--------cCCCCcccccccc
Q 044354 177 GHSFCKKCLRSAADK--------CGKKCPKCRQLIS 204 (426)
Q Consensus 177 gH~FC~~CI~~~l~~--------~~~~CP~CR~~i~ 204 (426)
.-.||..||...+.. ..+.||.|+..-+
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 667999999876532 3578999987533
No 139
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=44.94 E-value=12 Score=24.25 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=5.1
Q ss_pred cccccccCC
Q 044354 160 SCAICLEIC 168 (426)
Q Consensus 160 ~CpIC~~~l 168 (426)
.||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666544
No 140
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=44.42 E-value=10 Score=39.84 Aligned_cols=32 Identities=19% Similarity=0.623 Sum_probs=25.0
Q ss_pred ccccccccccCCCCcee--ccCCCcchhhhHHhh
Q 044354 157 EELSCAICLEICFEPST--TTCGHSFCKKCLRSA 188 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~ 188 (426)
-...||||+-++-.... .-|..+.|..|+..+
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 34789999987766544 359999999999765
No 141
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.72 E-value=12 Score=42.34 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=28.0
Q ss_pred ccccccccCCCCc--eeccCCCcchhhhHHhhhhhcCCCCcc
Q 044354 159 LSCAICLEICFEP--STTTCGHSFCKKCLRSAADKCGKKCPK 198 (426)
Q Consensus 159 l~CpIC~~~l~~P--v~lpCgH~FC~~CI~~~l~~~~~~CP~ 198 (426)
+.|.||.-....- +...|+|.....|+..|+.. +-.||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCC
Confidence 5566665544332 23579999999999999988 457874
No 142
>PLN02436 cellulose synthase A
Probab=42.59 E-value=15 Score=43.13 Aligned_cols=46 Identities=22% Similarity=0.634 Sum_probs=34.2
Q ss_pred ccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
-.|.||.+.+-. |.+ -.|+--.|..|++--.+.+...||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 479999997642 222 2477789999996555666778999998876
No 143
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.80 E-value=41 Score=33.58 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=54.9
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
.+.+.|.|-++++..|+++|-|=+|=..=|.+.+..-+.-=|+-+.++.. ..+.+|..|...|..|.
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte-~q~ipN~alkevIa~fl 275 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTE-YQLIPNLALKEVIAAFL 275 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCH-HhhccchHHHHHHHHHH
Confidence 35577899999999999999999999999999887655556777777774 34677999999998883
No 144
>PF15616 TerY-C: TerY-C metal binding domain
Probab=39.51 E-value=17 Score=32.60 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=32.2
Q ss_pred hhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 153 DKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+.|...--||.|...+--.+- .||++||.. .....+||-|.....
T Consensus 72 seL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HHhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 445556789999997765554 799999842 222568999987654
No 145
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=13 Score=41.86 Aligned_cols=49 Identities=35% Similarity=0.771 Sum_probs=35.1
Q ss_pred cccccccccccCCCCce----------eccCCCcc--------------------hhhhHHhhhhh-------cCCCCcc
Q 044354 156 REELSCAICLEICFEPS----------TTTCGHSF--------------------CKKCLRSAADK-------CGKKCPK 198 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv----------~lpCgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 198 (426)
.|.-.|+-|+..+.+|. .+.||..| |..|..++.+- ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 35578999999888773 25688776 99999887432 2457999
Q ss_pred cccccc
Q 044354 199 CRQLIS 204 (426)
Q Consensus 199 CR~~i~ 204 (426)
|.-.+.
T Consensus 179 CGP~~~ 184 (750)
T COG0068 179 CGPHLF 184 (750)
T ss_pred cCCCeE
Confidence 965443
No 146
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=37.86 E-value=6.1 Score=33.05 Aligned_cols=39 Identities=28% Similarity=0.796 Sum_probs=30.8
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
..|-||.....+| |..||..|... ...|.+|.+.|....
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~nTK 93 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILNTK 93 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhccc
Confidence 5799999998888 66799999754 347999988776543
No 147
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=37.66 E-value=42 Score=31.65 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=29.4
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
..+.||.|.-.+. +...+.. .++||.|...+...+.-.....+...++.+
T Consensus 112 ~~y~C~~~~~r~s---------------fdeA~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l 161 (176)
T COG1675 112 NYYVCPNCHVKYS---------------FDEAMEL-GFTCPKCGEDLEEYDSSEEIEELESELDEL 161 (176)
T ss_pred CceeCCCCCCccc---------------HHHHHHh-CCCCCCCCchhhhccchHHHHHHHHHHHHH
Confidence 4588887776544 1222222 589999999887655444444444444443
No 148
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=36.57 E-value=14 Score=36.42 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=39.3
Q ss_pred cccc--ccccCCCCceec-cCCCcchhhhHHhh------hh---hcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 159 LSCA--ICLEICFEPSTT-TCGHSFCKKCLRSA------AD---KCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 159 l~Cp--IC~~~l~~Pv~l-pCgH~FC~~CI~~~------l~---~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
--|. .|..+=.-|+.- .|++.||..=..-. .. .....||.|-+++.....-.++..+...+...
T Consensus 9 kHCs~~~CkqlDFLPf~Cd~C~~~FC~eHrsye~H~Cp~~~~~~~~v~icp~cs~pv~~~~de~~~~~v~~h~~~d 84 (250)
T KOG3183|consen 9 KHCSVPYCKQLDFLPFKCDGCSGIFCLEHRSYESHHCPKGLRIDVQVPICPLCSKPVPTKKDEAPDKVVEPHISND 84 (250)
T ss_pred cccCcchhhhccccceeeCCccchhhhccchHhhcCCCcccccceeecccCCCCCCCCCCCCcchhhhhchhhccc
Confidence 3465 788877778764 59999987533211 11 11357999999988665444444444444433
No 149
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=36.53 E-value=20 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=22.8
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
..+.||.|..-|.- ...+. ..+.||.|...+...+
T Consensus 116 ~~Y~Cp~C~~rytf---------------~eA~~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 116 MFFFCPNCHIRFTF---------------DEAME-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred CEEECCCCCcEEeH---------------HHHhh-cCCcCCCCCCCCeecc
Confidence 45889987754431 11222 3789999999888644
No 150
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.34 E-value=70 Score=23.69 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=11.2
Q ss_pred CccccccccccCchhHHHHhh
Q 044354 244 QSPQRGFHNNVRTRSMRSSAT 264 (426)
Q Consensus 244 ~~pc~gC~~~i~~~~lR~H~~ 264 (426)
...|+.|...+.. .|..|+.
T Consensus 31 ~v~CPiC~~~~~~-~l~~Hl~ 50 (54)
T PF05605_consen 31 NVVCPICSSRVTD-NLIRHLN 50 (54)
T ss_pred CccCCCchhhhhh-HHHHHHH
Confidence 4567777765442 4555553
No 151
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=36.33 E-value=16 Score=35.90 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.6
Q ss_pred CCCCcccccccc
Q 044354 193 GKKCPKCRQLIS 204 (426)
Q Consensus 193 ~~~CP~CR~~i~ 204 (426)
...||.|...|.
T Consensus 274 ~~~C~~C~skF~ 285 (296)
T COG5242 274 VPVCKKCKSKFS 285 (296)
T ss_pred cCcCcccccccc
Confidence 467888877765
No 152
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.17 E-value=22 Score=41.87 Aligned_cols=46 Identities=22% Similarity=0.645 Sum_probs=33.7
Q ss_pred ccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
-.|.||.+.+-- |.+ -.|+--.|..|.+==.+.++..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 489999997642 222 2588889999995444556678999998776
No 153
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=36.04 E-value=9.9 Score=43.37 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=29.3
Q ss_pred ccccccccCCCCcee--ccCCCcchhhhHHhhhhh-----cCCCCcccccc
Q 044354 159 LSCAICLEICFEPST--TTCGHSFCKKCLRSAADK-----CGKKCPKCRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~~-----~~~~CP~CR~~ 202 (426)
-.|-.|..-+.+-.- ..|+|.||..|+..|.-. ....|++|+..
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 467788776665332 469999999999999511 12356666543
No 154
>PF06869 DUF1258: Protein of unknown function (DUF1258); InterPro: IPR009667 This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that this family contains a number of conserved cysteine and histidine residues.
Probab=35.64 E-value=35 Score=33.97 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=34.7
Q ss_pred CCcchhhhHHhhhhhcCCCCccc--cccccCCCCcchhHHHHHHHHHHChhHHHHHHHHHH
Q 044354 177 GHSFCKKCLRSAADKCGKKCPKC--RQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAAA 235 (426)
Q Consensus 177 gH~FC~~CI~~~l~~~~~~CP~C--R~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~~~ 235 (426)
-|.||..|.. .... ...|-.| ...+. --.+-....|.++++.|+++....++....
T Consensus 17 ~h~~CN~CG~-~~~~-~~kC~~c~~~~vak-fvRig~~~QL~dLV~~y~~~Il~ir~~Lk~ 74 (258)
T PF06869_consen 17 THFICNSCGK-VVES-NEKCSCCGCGPVAK-FVRIGGFSQLQDLVEQYLEDILEIREKLKS 74 (258)
T ss_pred eehhhhhhhh-hhcc-CceeeccCCCccEE-EEEEcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999987 3322 4567655 22222 112334677999999998887766655444
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=35.51 E-value=21 Score=26.29 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=22.5
Q ss_pred ccccccccCCCCc----eeccCCCcchhhhHHhhhh
Q 044354 159 LSCAICLEICFEP----STTTCGHSFCKKCLRSAAD 190 (426)
Q Consensus 159 l~CpIC~~~l~~P----v~lpCgH~FC~~CI~~~l~ 190 (426)
..|.+|...|..- .-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 3688887755432 2247999999999876643
No 156
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.16 E-value=18 Score=35.99 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred ccccccccccCCCCcee-ccCCCcchhhhHHhhhhh-cCCCCcccccc
Q 044354 157 EELSCAICLEICFEPST-TTCGHSFCKKCLRSAADK-CGKKCPKCRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~-~~~~CP~CR~~ 202 (426)
-.+.|||-...+.+|++ ..|||.|=..-|...+.. ....||+-...
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 35899999999999987 679999999999887743 13468874443
No 157
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.87 E-value=21 Score=40.09 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=5.3
Q ss_pred ccccccccC
Q 044354 159 LSCAICLEI 167 (426)
Q Consensus 159 l~CpIC~~~ 167 (426)
..||-|...
T Consensus 2 ~~Cp~Cg~~ 10 (645)
T PRK14559 2 LICPQCQFE 10 (645)
T ss_pred CcCCCCCCc
Confidence 356666654
No 158
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.74 E-value=28 Score=41.76 Aligned_cols=64 Identities=17% Similarity=0.438 Sum_probs=38.0
Q ss_pred cccccccccCCCCceeccCCCc-----chhhhHHhhhhh--cCCCCccccccccCCCC--cchhHHHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGHS-----FCKKCLRSAADK--CGKKCPKCRQLISNGRS--CTVNTVLWNTIQL 221 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~-----FC~~CI~~~l~~--~~~~CP~CR~~i~~~~~--l~~N~~L~~lI~~ 221 (426)
.+.||-|.........-.||+. +|..|-...... ....||.|..++..... +.+...+...++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~ 739 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALEN 739 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHH
Confidence 4789999886555444458854 488887653211 13479999988775332 3334444444443
No 159
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.41 E-value=21 Score=28.44 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=9.4
Q ss_pred cchhhhHHhhhhh
Q 044354 179 SFCKKCLRSAADK 191 (426)
Q Consensus 179 ~FC~~CI~~~l~~ 191 (426)
.||..|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999864
No 160
>KOG2612 consensus Predicted integral membrane protein [Function unknown]
Probab=33.92 E-value=45 Score=28.08 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=26.0
Q ss_pred ccccCccccccccccCchhHHHHhhhcccc
Q 044354 240 EAEHQSPQRGFHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 240 ~~~~~~pc~gC~~~i~~~~lR~H~~~c~~~ 269 (426)
+..+.+.|..|+..+....+-.|+..|...
T Consensus 70 ek~~~~hCeNC~RdVaAaR~AaHLekCl~~ 99 (103)
T KOG2612|consen 70 EKPMDCHCENCDRDVAAARFAAHLEKCLGM 99 (103)
T ss_pred cCCccccCCCCccHHHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999864
No 161
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=32.82 E-value=23 Score=32.51 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=22.6
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
..+.||.|..-+.. ...+.. ++.||.|...+...+
T Consensus 108 ~~Y~Cp~c~~r~tf---------------~eA~~~-~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 108 MFFICPNMCVRFTF---------------NEAMEL-NFTCPRCGAMLDYLD 142 (158)
T ss_pred CeEECCCCCcEeeH---------------HHHHHc-CCcCCCCCCEeeecc
Confidence 45789887754431 122222 789999999887544
No 162
>PLN02400 cellulose synthase
Probab=32.60 E-value=23 Score=41.84 Aligned_cols=47 Identities=19% Similarity=0.501 Sum_probs=34.0
Q ss_pred ccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
-.|.||.+.+-- |.+ -.|+--.|..|++==-+.+...||.|+..+..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 479999997643 222 35887899999954445556789999987763
No 163
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.59 E-value=4.9 Score=42.05 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=37.5
Q ss_pred ccccccccCCCCc----eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFEP----STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~P----v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
-.|.||...|+.- ..+-|||.+...||..|+.. ..+||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 4688998877654 33679999999999999987 6789999887764
No 164
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.24 E-value=33 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=21.9
Q ss_pred cccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccc
Q 044354 160 SCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLI 203 (426)
Q Consensus 160 ~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i 203 (426)
.|.+|...+... .+.+|..|...+... ...||.|..++
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcC
Confidence 588887765322 123677777665332 34677776553
No 165
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.83 E-value=15 Score=38.58 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=0.0
Q ss_pred cccccccccCCC--------C---------c--eeccCCCcchhhhHHhhhhhc--------CCCCccccccccC
Q 044354 158 ELSCAICLEICF--------E---------P--STTTCGHSFCKKCLRSAADKC--------GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~--------~---------P--v~lpCgH~FC~~CI~~~l~~~--------~~~CP~CR~~i~~ 205 (426)
.-.||+|+..-. + | +..||||..-.+...-|.... ...||+|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 578999986321 1 1 124899987677777774421 1479999888774
No 166
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.80 E-value=17 Score=28.04 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=17.1
Q ss_pred ccccccccccCCCCcee----ccCCCcchhhhHHhhh
Q 044354 157 EELSCAICLEICFEPST----TTCGHSFCKKCLRSAA 189 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~l 189 (426)
+.-.|.+|...|.--.. -.||+.||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34679999998842211 3699999999987654
No 167
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=31.77 E-value=32 Score=22.15 Aligned_cols=23 Identities=13% Similarity=-0.075 Sum_probs=19.8
Q ss_pred ccccccccccCchhHHHHhhhcc
Q 044354 245 SPQRGFHNNVRTRSMRSSATSSG 267 (426)
Q Consensus 245 ~pc~gC~~~i~~~~lR~H~~~c~ 267 (426)
..|+.|++.+....+..|+..|.
T Consensus 2 v~CPiC~~~v~~~~in~HLD~CL 24 (26)
T smart00734 2 VQCPVCFREVPENLINSHLDSCL 24 (26)
T ss_pred CcCCCCcCcccHHHHHHHHHHhc
Confidence 46889999998888999999884
No 168
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.03 E-value=20 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=19.9
Q ss_pred cccc--ccccCCCC-------ceec-cCCCcchhhhHHhh
Q 044354 159 LSCA--ICLEICFE-------PSTT-TCGHSFCKKCLRSA 188 (426)
Q Consensus 159 l~Cp--IC~~~l~~-------Pv~l-pCgH~FC~~CI~~~ 188 (426)
..|| -|..++.. .+.- .|+|.||..|...|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 4577 67554332 1233 58999999998877
No 169
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=31.00 E-value=20 Score=38.82 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=23.5
Q ss_pred cccccccccccCCCC-ceeccCCCcchhhhHHhhhhh-----------cCCCCcccccccc
Q 044354 156 REELSCAICLEICFE-PSTTTCGHSFCKKCLRSAADK-----------CGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~-Pv~lpCgH~FC~~CI~~~l~~-----------~~~~CP~CR~~i~ 204 (426)
...+.|..|..+-.. .+...=-..||..|+...-.. +-+.||.|...+.
T Consensus 3 ~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred ccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 344667766664421 111111224677776554221 0145777766554
No 170
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.55 E-value=36 Score=38.70 Aligned_cols=43 Identities=28% Similarity=0.480 Sum_probs=31.6
Q ss_pred ccccccccCCCCceec--cCCCcchhhhHHhhhhhcCCCCcc--cccc
Q 044354 159 LSCAICLEICFEPSTT--TCGHSFCKKCLRSAADKCGKKCPK--CRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~l--pCgH~FC~~CI~~~l~~~~~~CP~--CR~~ 202 (426)
-.|.+|..++..-..- -|||.-...|+..|+.. ...||. |...
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~-~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK-ASPCAKSICPHL 826 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhc-CCCCccccCCcc
Confidence 4788888777654442 49999999999999976 566776 6443
No 171
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=30.26 E-value=28 Score=35.93 Aligned_cols=10 Identities=40% Similarity=1.348 Sum_probs=5.6
Q ss_pred cCCCcchhhh
Q 044354 175 TCGHSFCKKC 184 (426)
Q Consensus 175 pCgH~FC~~C 184 (426)
.|.|.||..|
T Consensus 350 ~Ck~~FCldC 359 (378)
T KOG2807|consen 350 SCKNVFCLDC 359 (378)
T ss_pred hccceeeccc
Confidence 3555555555
No 172
>PLN02195 cellulose synthase A
Probab=30.11 E-value=35 Score=39.94 Aligned_cols=46 Identities=28% Similarity=0.518 Sum_probs=34.1
Q ss_pred ccccccccCCC-----Ccee--ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICF-----EPST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~-----~Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
-.|.||.+.+- +|.+ -.|+--.|..|.+=--+.++..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 47999998553 3332 3588889999995444556678999998877
No 173
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.89 E-value=33 Score=40.44 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=34.2
Q ss_pred ccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..|.||.+..-. |.+ -.|+--.|..|++--.+.+...||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 579999997542 322 2588889999996545566778999998776
No 175
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=29.69 E-value=26 Score=34.08 Aligned_cols=46 Identities=17% Similarity=0.613 Sum_probs=36.0
Q ss_pred cccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
...|.+|..+.-.-+.- .|+-.+...|+...+.. ...||.|...++
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 35899999988776553 57777888999999877 778999965444
No 176
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=35 Score=38.39 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=34.8
Q ss_pred cccccccCCCCceeccCCC-cchhhhHHhhhhh-----cCCCCccccccc
Q 044354 160 SCAICLEICFEPSTTTCGH-SFCKKCLRSAADK-----CGKKCPKCRQLI 203 (426)
Q Consensus 160 ~CpIC~~~l~~Pv~lpCgH-~FC~~CI~~~l~~-----~~~~CP~CR~~i 203 (426)
.|+||-.-+..+..-.||| ..|..|.....-. ....||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 4999999988888889999 9999999877432 134679998743
No 177
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.57 E-value=33 Score=32.99 Aligned_cols=50 Identities=14% Similarity=0.365 Sum_probs=26.9
Q ss_pred ccccccccccCCCCceecc-------CCCcchhhh--HHhhhhhcCCCCccccccccCCC
Q 044354 157 EELSCAICLEICFEPSTTT-------CGHSFCKKC--LRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lp-------CgH~FC~~C--I~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
..+.||||...|....+.. =.--||..- +...+.. ...||.|.-......
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~-V~vCP~CgyA~~~~~ 62 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYE-VWVCPHCGYAAFEED 62 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeee-EEECCCCCCcccccc
Confidence 4588999999987654321 011122210 1222211 357999987766443
No 178
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=27.90 E-value=25 Score=24.17 Aligned_cols=26 Identities=4% Similarity=-0.123 Sum_probs=22.3
Q ss_pred CccccccccccCchhHHHHhhhcccc
Q 044354 244 QSPQRGFHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 244 ~~pc~gC~~~i~~~~lR~H~~~c~~~ 269 (426)
...|..|+..|....+-.|++.|...
T Consensus 4 ~~~C~nC~R~v~a~RfA~HLekCmg~ 29 (33)
T PF08209_consen 4 YVECPNCGRPVAASRFAPHLEKCMGR 29 (33)
T ss_dssp EEE-TTTSSEEEGGGHHHHHHHHTCH
T ss_pred eEECCCCcCCcchhhhHHHHHHHHcc
Confidence 46789999999999999999999864
No 179
>PF14353 CpXC: CpXC protein
Probab=27.90 E-value=41 Score=29.23 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=23.9
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhh--cCCCCccccccccC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~--~~~~CP~CR~~i~~ 205 (426)
+.||.|...+...+-+.-.-..=..=....+.. ....||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 678988887765443222111111112222211 12579999987664
No 180
>PF12773 DZR: Double zinc ribbon
Probab=27.43 E-value=54 Score=23.63 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=15.2
Q ss_pred CcchhhhHHhhh--hhcCCCCcccccccc
Q 044354 178 HSFCKKCLRSAA--DKCGKKCPKCRQLIS 204 (426)
Q Consensus 178 H~FC~~CI~~~l--~~~~~~CP~CR~~i~ 204 (426)
-.||..|-.... ......||.|...+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 345555655544 222456888877654
No 181
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.41 E-value=36 Score=22.93 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=7.5
Q ss_pred CCCCcccccc
Q 044354 193 GKKCPKCRQL 202 (426)
Q Consensus 193 ~~~CP~CR~~ 202 (426)
...||.|...
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5689999664
No 182
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.78 E-value=36 Score=34.01 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=35.1
Q ss_pred hcccccccccccCCCCcee----ccCC-----CcchhhhHHhhhhhcC-------CCCcccccccc
Q 044354 155 LREELSCAICLEICFEPST----TTCG-----HSFCKKCLRSAADKCG-------KKCPKCRQLIS 204 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~----lpCg-----H~FC~~CI~~~l~~~~-------~~CP~CR~~i~ 204 (426)
.+.+-.|-||+..-++--. -||. |-....|+..|++... ..||.|+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4456789999986655432 3665 3468899999987532 36999988644
No 183
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.69 E-value=16 Score=22.95 Aligned_cols=8 Identities=50% Similarity=1.261 Sum_probs=3.9
Q ss_pred CCCccccc
Q 044354 194 KKCPKCRQ 201 (426)
Q Consensus 194 ~~CP~CR~ 201 (426)
.-||.|..
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555544
No 184
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=26.53 E-value=25 Score=39.78 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=34.5
Q ss_pred CCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHHHHhcccccccCccccccccccCchh-HHHHhhh--cccc
Q 044354 193 GKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAAALNSREAEHQSPQRGFHNNVRTRS-MRSSATS--SGDA 269 (426)
Q Consensus 193 ~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~~~~~~~~~~~~~pc~gC~~~i~~~~-lR~H~~~--c~~~ 269 (426)
+++|+-|.+.|..+. .|.+-|. -..-+...-|..|++.++..+ +..|++. |+++
T Consensus 281 KFKCtECgKAFKfKH------HLKEHlR-----------------IHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsl 337 (1007)
T KOG3623|consen 281 KFKCTECGKAFKFKH------HLKEHLR-----------------IHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISL 337 (1007)
T ss_pred cccccccchhhhhHH------HHHhhhe-----------------eecCCCCcCCcccccccccCCcccccccccchhhh
Confidence 478999988777422 2222221 112344567889999999987 8888765 6655
No 185
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=26.31 E-value=67 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.546 Sum_probs=23.4
Q ss_pred cccccccccCC--CCcee--ccCCCcchhhhHHh
Q 044354 158 ELSCAICLEIC--FEPST--TTCGHSFCKKCLRS 187 (426)
Q Consensus 158 ~l~CpIC~~~l--~~Pv~--lpCgH~FC~~CI~~ 187 (426)
...|++|.+.| .+.++ ..||-.+...|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 36799999999 45555 35999999999754
No 186
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.82 E-value=47 Score=34.20 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=28.8
Q ss_pred cccccccccCCC--------Cc-----------eeccCCCcchhhhHHhhhhhc--------CCCCccccccccC
Q 044354 158 ELSCAICLEICF--------EP-----------STTTCGHSFCKKCLRSAADKC--------GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~--------~P-----------v~lpCgH~FC~~CI~~~l~~~--------~~~CP~CR~~i~~ 205 (426)
+-.||+|+.+-. .| ...||||..-.+-..=|.... ...||+|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 578999987421 11 124899965444444453321 2469999887764
No 187
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.37 E-value=35 Score=30.99 Aligned_cols=21 Identities=33% Similarity=0.936 Sum_probs=13.3
Q ss_pred cccccccccccCCCCceeccCCCc
Q 044354 156 REELSCAICLEICFEPSTTTCGHS 179 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~ 179 (426)
.++-+|.||+..-.. -.|||.
T Consensus 63 ~ddatC~IC~KTKFA---DG~GH~ 83 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA---DGCGHN 83 (169)
T ss_pred CcCcchhhhhhcccc---cccCcc
Confidence 466899999874321 247773
No 188
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.29 E-value=91 Score=36.54 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=55.9
Q ss_pred hhcccccccccccCCCCceecc-CCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 154 KLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
+..+++.=||=..++.+||.+| -+++.|..=|...+-. ..+=|+||.++.. +.+..|..|...|+.|.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~-d~v~pn~eLK~kI~~~~ 934 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTE-DMVSPNEELKAKIRCWI 934 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCch-hhcCCCHHHHHHHHHHH
Confidence 3556778888899999999998 9999999999988865 4455999999984 45677999999998883
No 189
>PLN03086 PRLI-interacting factor K; Provisional
Probab=25.15 E-value=76 Score=35.18 Aligned_cols=48 Identities=27% Similarity=0.494 Sum_probs=24.2
Q ss_pred ccccccccccCCCCcee-----------ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPST-----------TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-----------lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+...|+-|...+..-.. +.|-|.-|...+...-......|+.|...+.
T Consensus 406 ~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~ 464 (567)
T PLN03086 406 DTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ 464 (567)
T ss_pred CeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc
Confidence 44678888775543211 2333322333332222223467999977664
No 190
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.06 E-value=36 Score=38.80 Aligned_cols=66 Identities=21% Similarity=0.369 Sum_probs=39.2
Q ss_pred ccccccccccCCCCcee-----c--cCCCcchhhhHHhhhhhcCCCCcccccc-ccCCCCcchhHHHHHHHHHHChhH
Q 044354 157 EELSCAICLEICFEPST-----T--TCGHSFCKKCLRSAADKCGKKCPKCRQL-ISNGRSCTVNTVLWNTIQLLFPQE 226 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-----l--pCgH~FC~~CI~~~l~~~~~~CP~CR~~-i~~~~~l~~N~~L~~lI~~l~p~E 226 (426)
..+.|..|..++..|-. + .=+..+|..|-.. ......||.|... +... -.-...+.+.+..+||..
T Consensus 434 ~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~--~~~p~~Cp~Cgs~~L~~~--G~GterieeeL~~~FP~~ 507 (730)
T COG1198 434 PLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ--EPIPQSCPECGSEHLRAV--GPGTERIEEELKRLFPGA 507 (730)
T ss_pred ceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC--CCCCCCCCCCCCCeeEEe--cccHHHHHHHHHHHCCCC
Confidence 35778888887776532 1 2344567777654 2224689999876 2211 111355777788888763
No 191
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.61 E-value=39 Score=31.29 Aligned_cols=26 Identities=31% Similarity=0.782 Sum_probs=21.1
Q ss_pred CCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 177 GHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 177 gH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
.+.||..|-.+.+. .||.|..+|...
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCc
Confidence 46799999888765 699999998853
No 192
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=24.17 E-value=32 Score=39.09 Aligned_cols=47 Identities=30% Similarity=0.775 Sum_probs=34.2
Q ss_pred ccccccccccCCCCcee----------ccCCCcc--------------------hhhhHHhhhhh-------cCCCCccc
Q 044354 157 EELSCAICLEICFEPST----------TTCGHSF--------------------CKKCLRSAADK-------CGKKCPKC 199 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~----------lpCgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 199 (426)
+.-.|+-|+..+.+|.. +.||..| |..|..++... ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 55789999998887732 5677765 99999997432 13579999
Q ss_pred cccc
Q 044354 200 RQLI 203 (426)
Q Consensus 200 R~~i 203 (426)
.-.+
T Consensus 147 gp~l 150 (711)
T TIGR00143 147 GPQL 150 (711)
T ss_pred CcEE
Confidence 6555
No 193
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.05 E-value=44 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.786 Sum_probs=17.0
Q ss_pred cccccccCCCCceeccCCCcchhhhHHhhh
Q 044354 160 SCAICLEICFEPSTTTCGHSFCKKCLRSAA 189 (426)
Q Consensus 160 ~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l 189 (426)
.|+||. ....+.||..|+..-+
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L 22 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRL 22 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHH
Confidence 499999 4466778999998753
No 194
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=23.63 E-value=37 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.185 Sum_probs=41.8
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchh--HHHHHHHHHHChhHHHHHHHHHHh
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVN--TVLWNTIQLLFPQEVEARKAAAAL 236 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N--~~L~~lI~~l~p~E~~~r~~~~~~ 236 (426)
..|+.|..+|... ++.+|..|+..--.. --..+.-|... ++ ..+.++.+..=-.+..-.+...+.
T Consensus 4 ~nC~~CgklF~~~-----~~~iCp~C~~~~e~~----f~kV~~yLr~~----p~~~ati~eV~e~tgVs~~~I~~~IreG 70 (137)
T TIGR03826 4 ANCPKCGRLFVKT-----GRDVCPSCYEEEERE----FEKVYKFLRKH----ENRQATVSEIVEETGVSEKLILKFIREG 70 (137)
T ss_pred ccccccchhhhhc-----CCccCHHHhHHHHHH----HHHHHHHHHHC----CCCCCCHHHHHHHHCcCHHHHHHHHHcC
Confidence 4688888887751 666777887543211 00011111100 12 334444444322222222222111
Q ss_pred c---ccccccCccccccccccCchh
Q 044354 237 N---SREAEHQSPQRGFHNNVRTRS 258 (426)
Q Consensus 237 ~---~~~~~~~~pc~gC~~~i~~~~ 258 (426)
. .+......||..|+..|....
T Consensus 71 RL~~~~~~nl~~~CE~CG~~I~~Gr 95 (137)
T TIGR03826 71 RLQLKHFPNLGYPCERCGTSIREGR 95 (137)
T ss_pred CeeccCCCCCcCcccccCCcCCCCC
Confidence 1 223466689999999877753
No 195
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.36 E-value=45 Score=32.65 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=15.0
Q ss_pred ccccccccCCC-Ccee--ccCCCcc
Q 044354 159 LSCAICLEICF-EPST--TTCGHSF 180 (426)
Q Consensus 159 l~CpIC~~~l~-~Pv~--lpCgH~F 180 (426)
|.||||...+. ..-. -+++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 78999999875 2222 3457776
No 196
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=25 Score=35.77 Aligned_cols=48 Identities=35% Similarity=0.745 Sum_probs=38.6
Q ss_pred cccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
.+.-.|-||...+.-|... .|+|-||..|...|... ...||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcC
Confidence 3456788999988888775 49999999999998766 668999887655
No 197
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.65 E-value=22 Score=26.45 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=17.0
Q ss_pred ccccc--cccCCCCc-------eecc-CCCcchhhhHHhh
Q 044354 159 LSCAI--CLEICFEP-------STTT-CGHSFCKKCLRSA 188 (426)
Q Consensus 159 l~CpI--C~~~l~~P-------v~lp-CgH~FC~~CI~~~ 188 (426)
..||- |..++... ++=+ |++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47876 87765421 3324 9999999998776
No 198
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=22.50 E-value=27 Score=35.99 Aligned_cols=28 Identities=21% Similarity=0.653 Sum_probs=20.1
Q ss_pred CCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 177 GHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 177 gH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
|-.||..|-...+......|+.|+..|-
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FC 356 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFC 356 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceee
Confidence 4557999966666555678999977665
No 199
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.03 E-value=53 Score=33.08 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=5.1
Q ss_pred CCCcccccc
Q 044354 194 KKCPKCRQL 202 (426)
Q Consensus 194 ~~CP~CR~~ 202 (426)
..||.|...
T Consensus 270 ~~C~~Cgt~ 278 (279)
T TIGR00627 270 PICKTCKTA 278 (279)
T ss_pred CCCCCCCCC
Confidence 366666543
No 200
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.52 E-value=70 Score=23.75 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=5.9
Q ss_pred CCccccccccC
Q 044354 195 KCPKCRQLISN 205 (426)
Q Consensus 195 ~CP~CR~~i~~ 205 (426)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998874
No 201
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=21.32 E-value=31 Score=36.36 Aligned_cols=43 Identities=26% Similarity=0.520 Sum_probs=0.0
Q ss_pred ccccccccCCCCc--------------eeccCCCcchhhhHHhhhhh-----cCCCCcccccccc
Q 044354 159 LSCAICLEICFEP--------------STTTCGHSFCKKCLRSAADK-----CGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~P--------------v~lpCgH~FC~~CI~~~l~~-----~~~~CP~CR~~i~ 204 (426)
.+|||=+..+.-| |.+.|||++=. ..|... ....||+|+..-.
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCC
Confidence 5788876655432 33689998754 344321 2458999987533
No 202
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.17 E-value=44 Score=30.15 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=14.5
Q ss_pred ccccCCCCceeccCCCcchh
Q 044354 163 ICLEICFEPSTTTCGHSFCK 182 (426)
Q Consensus 163 IC~~~l~~Pv~lpCgH~FC~ 182 (426)
||...-..-+.-.|||.||.
T Consensus 62 i~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEecccccEEEEeccccccC
Confidence 56666555445689999996
No 203
>PF10426 zf-RAG1: Recombination-activating protein 1 zinc-finger domain; InterPro: IPR019485 During lymphocyte development, the genes encoding immunoglobulins and T-cell receptors are assembled from variable (V), diversity (D), and joining (J) gene segments. This combinatorial process, known as V(D)J recombination, allows the generation of an enormous range of binding specificities from a limited amount of genetic information. The V(D)J recombination-activating proteins 1 and 2 (RAG1 and RAG2) form a complex that initiates this process by binding to the conserved recombination signal sequences (RSS) and introducing a double-strand break between the RSS and the adjacent coding segment. These breaks are generated in two steps, nicking of one strand (hydrolysis), followed by hairpin formation (transesterification). RAG1/2 has also been shown to function as a transposase in vitro, and to possess RSS-independent endonuclease activity (end processing) and hairpin opening. RAG1 alone can bind to RSS but stable, efficient binding requires RAG2. All known catalytic activities require the presence of both proteins. For more information see []. Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc-finger domain found in the RAG1 protein. The structure contains the characteristic two-stranded beta-sheet and alpha-helix of a classical zinc-finger. The domain binds one zinc and, in complex with an adjacent RING-type zinc finger domain, helps to stabilise the whole of the dimerisation region of recombination activating protein 1 (RAG1) []. The function of the whole is to bind double-stranded DNA. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0016881 acid-amino acid ligase activity; PDB: 1RMD_A.
Probab=21.12 E-value=46 Score=22.53 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=16.4
Q ss_pred cCccccccccccCchhHHHHhhhcc
Q 044354 243 HQSPQRGFHNNVRTRSMRSSATSSG 267 (426)
Q Consensus 243 ~~~pc~gC~~~i~~~~lR~H~~~c~ 267 (426)
..+|..+|+..|.+.++.+|++...
T Consensus 3 vrCPvkdC~EEv~lgKY~~H~ssHK 27 (30)
T PF10426_consen 3 VRCPVKDCDEEVSLGKYSHHLSSHK 27 (30)
T ss_dssp EE--STT---EEEHHHHHHHHHTS-
T ss_pred cccccccCcchhhhhhhcccccccc
Confidence 3578899999999999999998653
No 204
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=20.96 E-value=32 Score=39.59 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=0.0
Q ss_pred cccccccccCCCCceeccCCC-----cchhhhHHhhhhhcCCCCccccccccC
Q 044354 158 ELSCAICLEICFEPSTTTCGH-----SFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH-----~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
...||-|...-.....-.||- .+|..|-...- ...||.|......
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~---~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE---EDECPKCGRETTS 704 (900)
T ss_dssp -----------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccccceeccccccccC---ccccccccccCcc
Confidence 478999988766555556873 48999987654 3489999887654
No 205
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.73 E-value=48 Score=28.11 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=11.5
Q ss_pred cchhhhHHhhhhh
Q 044354 179 SFCKKCLRSAADK 191 (426)
Q Consensus 179 ~FC~~CI~~~l~~ 191 (426)
.||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999865
No 206
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.55 E-value=40 Score=25.86 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=8.2
Q ss_pred ccccccccccC
Q 044354 157 EELSCAICLEI 167 (426)
Q Consensus 157 ~~l~CpIC~~~ 167 (426)
..+.||||..-
T Consensus 3 ~Wi~CP~CgnK 13 (55)
T PF14205_consen 3 EWILCPICGNK 13 (55)
T ss_pred eEEECCCCCCc
Confidence 35789999863
No 207
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.27 E-value=33 Score=37.95 Aligned_cols=23 Identities=48% Similarity=1.038 Sum_probs=17.1
Q ss_pred ccCCCcchhhhHHhhhhhcCCCCcccc
Q 044354 174 TTCGHSFCKKCLRSAADKCGKKCPKCR 200 (426)
Q Consensus 174 lpCgH~FC~~CI~~~l~~~~~~CP~CR 200 (426)
..|++.|...|+... +..||.|-
T Consensus 535 ~~C~avfH~~C~~r~----s~~CPrC~ 557 (580)
T KOG1829|consen 535 STCLAVFHKKCLRRK----SPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHHhcc----CCCCCchH
Confidence 369999999997642 34599993
No 208
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=20.01 E-value=70 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=14.0
Q ss_pred ccccccCCCC-ceecc-CCCcchh
Q 044354 161 CAICLEICFE-PSTTT-CGHSFCK 182 (426)
Q Consensus 161 CpIC~~~l~~-Pv~lp-CgH~FC~ 182 (426)
|.+|.....- |+.=. |+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 5566664444 66644 8888875
Done!