Query 044354
Match_columns 426
No_of_seqs 334 out of 2017
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl2_A E3 ubiquitin-protein li 99.6 2.1E-16 7.2E-21 136.1 4.5 81 147-227 41-121 (124)
2 1rmd_A RAG1; V(D)J recombinati 99.6 2.4E-15 8.3E-20 127.9 5.4 97 153-268 18-114 (116)
3 1z6u_A NP95-like ring finger p 99.5 1.9E-15 6.5E-20 135.3 4.6 77 151-227 71-147 (150)
4 3hct_A TNF receptor-associated 99.5 1.8E-15 6.1E-20 129.5 4.0 99 151-269 11-109 (118)
5 3ztg_A E3 ubiquitin-protein li 99.5 3.4E-15 1.2E-19 121.7 5.3 69 154-222 9-79 (92)
6 3l11_A E3 ubiquitin-protein li 99.5 2.1E-15 7.1E-20 128.1 3.4 81 155-235 12-98 (115)
7 1t1h_A Gspef-atpub14, armadill 99.5 3.8E-15 1.3E-19 117.8 3.8 68 155-223 5-72 (78)
8 3knv_A TNF receptor-associated 99.5 4.1E-15 1.4E-19 131.9 3.4 100 151-269 24-132 (141)
9 2kr4_A Ubiquitin conjugation f 99.5 9.6E-15 3.3E-19 118.7 4.6 68 154-223 10-77 (85)
10 2ckl_A Polycomb group ring fin 99.5 3.3E-14 1.1E-18 119.5 7.5 76 151-227 8-87 (108)
11 1wgm_A Ubiquitin conjugation f 99.5 3.3E-14 1.1E-18 118.7 6.1 69 153-223 17-86 (98)
12 4ayc_A E3 ubiquitin-protein li 99.5 2.9E-14 9.8E-19 125.3 5.0 69 153-222 48-117 (138)
13 3hcs_A TNF receptor-associated 99.5 3E-14 1E-18 128.9 4.9 114 150-266 10-132 (170)
14 2ckl_B Ubiquitin ligase protei 99.5 4.5E-14 1.5E-18 127.2 5.8 75 152-226 48-123 (165)
15 2y43_A E3 ubiquitin-protein li 99.5 6E-14 2E-18 116.0 5.9 72 149-222 13-85 (99)
16 2kre_A Ubiquitin conjugation f 99.4 6.6E-14 2.2E-18 117.3 6.1 68 154-223 25-92 (100)
17 3lrq_A E3 ubiquitin-protein li 99.4 3.3E-14 1.1E-18 118.4 4.0 75 147-222 11-86 (100)
18 2yur_A Retinoblastoma-binding 99.4 1.4E-13 4.9E-18 108.2 4.7 58 152-209 9-68 (74)
19 1jm7_B BARD1, BRCA1-associated 99.4 2.2E-13 7.7E-18 116.2 5.9 70 149-222 13-83 (117)
20 2csy_A Zinc finger protein 183 99.4 1.4E-13 4.8E-18 109.7 4.2 63 155-220 12-74 (81)
21 2c2l_A CHIP, carboxy terminus 99.4 1.4E-13 4.7E-18 131.9 4.8 69 155-224 205-273 (281)
22 2ecw_A Tripartite motif-contai 99.4 4.7E-14 1.6E-18 112.1 0.6 64 152-216 13-81 (85)
23 2egp_A Tripartite motif-contai 99.4 1.3E-14 4.6E-19 114.4 -2.7 63 153-216 7-75 (79)
24 2ecy_A TNF receptor-associated 99.4 1.8E-13 6.3E-18 104.9 3.6 55 152-206 9-63 (66)
25 2yu4_A E3 SUMO-protein ligase 99.4 3.1E-13 1.1E-17 111.5 4.9 66 156-222 5-79 (94)
26 2djb_A Polycomb group ring fin 99.4 3.9E-13 1.3E-17 104.9 4.8 56 151-207 8-64 (72)
27 2ecv_A Tripartite motif-contai 99.4 7E-14 2.4E-18 111.1 0.4 63 152-215 13-80 (85)
28 2f42_A STIP1 homology and U-bo 99.3 5.9E-13 2E-17 122.7 5.4 68 155-223 103-170 (179)
29 2ysl_A Tripartite motif-contai 99.3 5.9E-13 2E-17 103.5 4.5 54 152-205 14-69 (73)
30 1jm7_A BRCA1, breast cancer ty 99.3 3.4E-13 1.2E-17 113.1 3.0 70 152-222 15-86 (112)
31 2ysj_A Tripartite motif-contai 99.3 1E-12 3.6E-17 99.6 4.4 49 151-199 13-63 (63)
32 2ecj_A Tripartite motif-contai 99.2 3.1E-12 1E-16 95.0 3.6 48 152-199 9-58 (58)
33 2d8t_A Dactylidin, ring finger 99.2 2.1E-12 7.1E-17 100.5 2.7 49 156-205 13-61 (71)
34 2ct2_A Tripartite motif protei 99.2 3.4E-12 1.2E-16 102.3 3.9 53 153-205 10-68 (88)
35 2ea6_A Ring finger protein 4; 99.2 2.8E-12 9.7E-17 98.1 2.2 49 155-204 12-67 (69)
36 3ng2_A RNF4, snurf, ring finge 99.2 5.4E-12 1.9E-16 97.3 2.5 51 156-207 8-65 (71)
37 1g25_A CDK-activating kinase a 99.2 8.7E-12 3E-16 95.2 3.2 50 157-206 2-56 (65)
38 2ecn_A Ring finger protein 141 99.2 6.4E-12 2.2E-16 97.1 1.8 53 152-206 9-61 (70)
39 2xeu_A Ring finger protein 4; 99.1 1.2E-11 4.2E-16 93.1 1.9 49 157-206 2-57 (64)
40 2ect_A Ring finger protein 126 99.1 3.5E-11 1.2E-15 94.8 4.2 51 155-206 12-65 (78)
41 1iym_A EL5; ring-H2 finger, ub 99.1 4.2E-11 1.4E-15 88.1 3.8 48 156-204 3-54 (55)
42 2ep4_A Ring finger protein 24; 99.1 3.9E-11 1.3E-15 93.6 3.7 52 154-206 11-65 (74)
43 1e4u_A Transcriptional repress 99.1 4.1E-11 1.4E-15 96.0 3.9 53 155-207 8-64 (78)
44 2ecm_A Ring finger and CHY zin 99.1 4.8E-11 1.6E-15 87.6 3.8 47 157-204 4-54 (55)
45 4ic3_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 94.7 3.2 53 148-205 14-67 (74)
46 1chc_A Equine herpes virus-1 r 99.1 5E-11 1.7E-15 91.4 3.7 48 157-205 4-52 (68)
47 2kiz_A E3 ubiquitin-protein li 99.1 6.8E-11 2.3E-15 91.0 4.0 49 156-205 12-63 (69)
48 1bor_A Transcription factor PM 99.1 3.3E-11 1.1E-15 90.0 2.0 45 157-205 5-49 (56)
49 3htk_C E3 SUMO-protein ligase 99.1 6.1E-11 2.1E-15 114.9 4.0 69 153-222 176-248 (267)
50 1x4j_A Ring finger protein 38; 99.0 7.3E-11 2.5E-15 92.5 3.3 49 156-205 21-72 (75)
51 2l0b_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 96.4 2.7 48 157-205 39-89 (91)
52 2ecg_A Baculoviral IAP repeat- 99.0 1.7E-10 5.8E-15 90.9 4.6 52 149-205 16-68 (75)
53 1v87_A Deltex protein 2; ring- 99.0 2.7E-10 9.2E-15 96.0 4.2 48 158-205 25-94 (114)
54 4ap4_A E3 ubiquitin ligase RNF 98.9 1.9E-10 6.5E-15 98.2 2.1 50 157-207 6-62 (133)
55 2yho_A E3 ubiquitin-protein li 98.9 2.6E-10 8.9E-15 91.3 1.4 52 149-205 9-61 (79)
56 2y1n_A E3 ubiquitin-protein li 98.9 7.5E-10 2.6E-14 112.9 3.7 52 155-206 329-380 (389)
57 2ecl_A Ring-box protein 2; RNF 98.8 2.5E-09 8.7E-14 85.5 3.7 48 157-205 14-76 (81)
58 2vje_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 81.5 3.2 48 157-205 7-57 (64)
59 4ap4_A E3 ubiquitin ligase RNF 98.7 1.8E-09 6.3E-14 92.0 1.2 50 156-206 70-126 (133)
60 2vje_B MDM4 protein; proto-onc 98.7 5.2E-09 1.8E-13 80.0 3.1 48 157-205 6-56 (63)
61 3t6p_A Baculoviral IAP repeat- 98.7 6E-09 2.1E-13 104.9 3.9 54 147-205 284-338 (345)
62 2bay_A PRE-mRNA splicing facto 98.7 6.2E-09 2.1E-13 79.5 2.4 49 158-207 3-52 (61)
63 3dpl_R Ring-box protein 1; ubi 98.6 1.5E-08 5.1E-13 85.7 4.1 46 158-204 37-100 (106)
64 2ea5_A Cell growth regulator w 98.6 1.8E-08 6E-13 78.4 3.6 44 157-205 14-58 (68)
65 1wim_A KIAA0161 protein; ring 98.6 6.8E-09 2.3E-13 85.0 1.1 46 157-202 4-61 (94)
66 2d8s_A Cellular modulator of i 98.4 2.2E-07 7.7E-12 74.6 4.6 50 157-206 14-71 (80)
67 4a0k_B E3 ubiquitin-protein li 98.3 6E-08 2.1E-12 83.5 0.1 45 159-204 49-111 (117)
68 2ct0_A Non-SMC element 1 homol 97.8 1.2E-05 4.1E-10 63.7 4.1 48 158-205 15-64 (74)
69 3vk6_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 66.6 3.3 83 159-269 2-87 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.4 8.1E-05 2.8E-09 56.4 3.5 48 157-204 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.4 4.7E-05 1.6E-09 76.4 1.7 49 157-205 307-373 (381)
72 3m62_A Ubiquitin conjugation f 96.9 0.00044 1.5E-08 77.4 3.9 70 154-225 887-957 (968)
73 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0024 8.2E-08 52.2 1.9 32 157-188 2-36 (101)
74 3nw0_A Non-structural maintena 95.6 0.0071 2.4E-07 57.7 3.9 48 158-205 180-229 (238)
75 3i2d_A E3 SUMO-protein ligase 92.5 0.092 3.2E-06 53.1 4.4 67 155-222 246-316 (371)
76 2ko5_A Ring finger protein Z; 91.6 0.087 3E-06 43.4 2.5 46 157-205 27-73 (99)
77 4fo9_A E3 SUMO-protein ligase 91.3 0.18 6.2E-06 50.8 4.9 66 155-221 212-281 (360)
78 2cs3_A Protein C14ORF4, MY039 89.7 0.41 1.4E-05 38.3 4.7 35 157-191 14-52 (93)
79 1weo_A Cellulose synthase, cat 73.7 2.8 9.7E-05 34.0 3.6 48 158-205 16-70 (93)
80 2xqn_T Testin, TESS; metal-bin 57.3 6.1 0.00021 32.7 2.8 46 157-205 29-75 (126)
81 1z60_A TFIIH basal transcripti 56.4 7 0.00024 29.2 2.7 40 159-199 16-58 (59)
82 3mjh_B Early endosome antigen 55.9 1.4 4.9E-05 29.5 -1.1 15 158-172 5-19 (34)
83 1m3v_A FLIN4, fusion of the LI 53.7 6.6 0.00023 32.6 2.4 47 158-205 32-81 (122)
84 1wd2_A Ariadne-1 protein homol 53.3 3.8 0.00013 30.5 0.8 33 159-191 7-47 (60)
85 1wil_A KIAA1045 protein; ring 51.8 11 0.00037 30.4 3.2 46 155-201 12-75 (89)
86 2k16_A Transcription initiatio 51.5 6.2 0.00021 30.1 1.7 49 157-205 17-71 (75)
87 2zet_C Melanophilin; complex, 50.5 2.3 7.9E-05 37.7 -1.0 45 157-201 67-116 (153)
88 2ct7_A Ring finger protein 31; 50.1 3.2 0.00011 32.8 -0.1 29 160-188 27-61 (86)
89 2rgt_A Fusion of LIM/homeobox 49.9 12 0.00041 32.7 3.6 46 157-205 32-77 (169)
90 2lbm_A Transcriptional regulat 49.8 9.6 0.00033 33.4 2.9 44 158-201 63-116 (142)
91 2lri_C Autoimmune regulator; Z 49.6 12 0.0004 28.3 3.0 45 158-203 12-60 (66)
92 1joc_A EEA1, early endosomal a 48.3 7.6 0.00026 33.0 1.9 31 158-188 69-103 (125)
93 2fiy_A Protein FDHE homolog; F 48.0 2.5 8.6E-05 41.6 -1.3 46 156-202 180-231 (309)
94 1y02_A CARP2, FYVE-ring finger 47.4 3.3 0.00011 35.3 -0.5 47 157-204 18-68 (120)
95 2cup_A Skeletal muscle LIM-pro 46.5 9.6 0.00033 30.1 2.2 46 157-205 32-78 (101)
96 2gmg_A Hypothetical protein PF 46.1 6.5 0.00022 32.8 1.1 30 170-205 67-96 (105)
97 2jtn_A LIM domain-binding prot 46.1 11 0.00037 33.4 2.7 46 157-205 86-131 (182)
98 1vfy_A Phosphatidylinositol-3- 44.1 9.9 0.00034 29.0 1.8 30 159-188 12-45 (73)
99 2jmo_A Parkin; IBR, E3 ligase, 43.9 5.9 0.0002 30.9 0.5 32 158-189 25-69 (80)
100 2xjy_A Rhombotin-2; oncoprotei 43.0 14 0.00048 30.6 2.8 48 157-205 28-78 (131)
101 1wev_A Riken cDNA 1110020M19; 42.7 6.6 0.00023 31.3 0.6 48 157-204 15-74 (88)
102 2c7n_A Rabex-5, GEF 1, RAB gua 42.4 15 0.0005 28.7 2.5 21 372-393 52-72 (74)
103 3t7l_A Zinc finger FYVE domain 42.3 11 0.00038 30.0 1.9 32 158-189 20-55 (90)
104 2jne_A Hypothetical protein YF 41.8 2.3 7.9E-05 35.1 -2.2 40 159-204 33-72 (101)
105 2yt5_A Metal-response element- 41.3 7.1 0.00024 29.0 0.6 48 157-204 5-63 (66)
106 2d8v_A Zinc finger FYVE domain 40.4 12 0.00042 28.6 1.8 32 157-189 7-39 (67)
107 2yw8_A RUN and FYVE domain-con 40.0 11 0.00039 29.4 1.7 31 158-188 19-53 (82)
108 1dvp_A HRS, hepatocyte growth 39.9 9.2 0.00031 35.2 1.2 34 155-188 158-195 (220)
109 1z2q_A LM5-1; membrane protein 39.7 12 0.0004 29.4 1.7 32 157-188 20-55 (84)
110 1wfk_A Zinc finger, FYVE domai 39.6 11 0.00036 30.1 1.4 31 158-188 9-43 (88)
111 3mpx_A FYVE, rhogef and PH dom 39.2 6.3 0.00022 39.4 0.0 33 157-189 374-410 (434)
112 1zbd_B Rabphilin-3A; G protein 38.6 2.7 9.4E-05 36.4 -2.4 45 157-201 54-106 (134)
113 3zyq_A Hepatocyte growth facto 38.5 10 0.00034 35.3 1.3 33 156-188 162-198 (226)
114 1f62_A Transcription factor WS 37.7 16 0.00055 25.6 2.0 42 160-201 2-49 (51)
115 1x4u_A Zinc finger, FYVE domai 37.3 13 0.00043 29.2 1.5 30 159-188 15-48 (84)
116 1rut_X Flinc4, fusion protein 37.1 8.7 0.0003 34.3 0.6 48 157-205 31-81 (188)
117 4g9i_A Hydrogenase maturation 35.9 11 0.00037 41.6 1.2 48 156-203 104-188 (772)
118 2l5u_A Chromodomain-helicase-D 35.8 16 0.00056 26.9 1.8 43 157-201 10-57 (61)
119 3ttc_A HYPF, transcriptional r 35.7 11 0.00037 40.8 1.1 48 156-203 15-99 (657)
120 3ql9_A Transcriptional regulat 34.9 20 0.00068 30.8 2.5 43 159-201 58-110 (129)
121 3o36_A Transcription intermedi 34.9 13 0.00045 33.1 1.4 45 158-203 4-52 (184)
122 3vth_A Hydrogenase maturation 34.3 12 0.0004 41.2 1.1 48 156-203 109-193 (761)
123 2pv0_B DNA (cytosine-5)-methyl 33.6 26 0.00091 35.4 3.5 28 175-202 112-148 (386)
124 2e6r_A Jumonji/ARID domain-con 33.4 5.7 0.0002 32.0 -1.2 45 157-201 15-65 (92)
125 2jrp_A Putative cytoplasmic pr 32.8 4.7 0.00016 32.2 -1.7 40 159-204 3-42 (81)
126 1mm2_A MI2-beta; PHD, zinc fin 31.9 21 0.00071 26.3 1.8 43 158-202 9-56 (61)
127 1wen_A Inhibitor of growth fam 31.7 30 0.001 26.4 2.8 47 157-204 15-67 (71)
128 1we9_A PHD finger family prote 31.5 15 0.00053 26.9 1.1 46 157-202 5-58 (64)
129 1iml_A CRIP, cysteine rich int 31.3 30 0.001 25.7 2.7 45 157-204 26-72 (76)
130 3lqh_A Histone-lysine N-methyl 29.6 22 0.00075 32.2 1.9 46 159-204 3-65 (183)
131 1weu_A Inhibitor of growth fam 29.4 56 0.0019 26.2 4.2 46 157-203 35-86 (91)
132 2o35_A Hypothetical protein DU 29.2 18 0.00061 29.9 1.1 13 179-191 42-54 (105)
133 3fyb_A Protein of unknown func 29.0 18 0.00061 29.9 1.1 13 179-191 41-53 (104)
134 2ku3_A Bromodomain-containing 28.3 23 0.0008 27.0 1.6 46 157-202 15-66 (71)
135 2l43_A N-teminal domain from h 27.9 26 0.0009 27.8 1.9 49 156-204 23-77 (88)
136 3u5n_A E3 ubiquitin-protein li 27.2 13 0.00045 33.8 0.0 44 158-203 7-55 (207)
137 2ro1_A Transcription intermedi 27.2 21 0.00071 32.3 1.3 44 159-202 3-49 (189)
138 2ee8_A Protein ODD-skipped-rel 26.9 47 0.0016 25.3 3.3 80 157-266 16-96 (106)
139 2jvx_A NF-kappa-B essential mo 26.8 29 0.001 22.1 1.6 23 245-267 4-27 (28)
140 2yql_A PHD finger protein 21A; 26.1 13 0.00043 26.9 -0.3 43 157-201 8-55 (56)
141 2yt9_A Zinc finger-containing 25.3 77 0.0026 23.4 4.2 75 158-264 7-86 (95)
142 2lv9_A Histone-lysine N-methyl 25.0 27 0.00091 28.2 1.5 43 158-201 28-75 (98)
143 2dar_A PDZ and LIM domain prot 24.5 32 0.0011 26.6 1.8 38 159-205 26-63 (90)
144 3mhs_C SAGA-associated factor 24.5 88 0.003 25.7 4.5 26 244-269 70-95 (99)
145 1x64_A Alpha-actinin-2 associa 24.1 39 0.0013 26.0 2.3 40 158-206 25-64 (89)
146 2dlq_A GLI-kruppel family memb 24.1 51 0.0018 25.6 3.1 21 244-264 94-115 (124)
147 1xwh_A Autoimmune regulator; P 23.9 18 0.00063 26.9 0.3 45 157-202 7-55 (66)
148 2dmd_A Zinc finger protein 64, 23.9 63 0.0021 24.0 3.4 75 158-266 8-87 (96)
149 2puy_A PHD finger protein 21A; 22.6 24 0.0008 25.7 0.6 43 158-202 5-52 (60)
150 3a1b_A DNA (cytosine-5)-methyl 22.3 44 0.0015 29.7 2.4 27 175-201 98-133 (159)
151 2d8x_A Protein pinch; LIM doma 22.2 37 0.0013 24.7 1.7 37 160-205 7-43 (70)
152 2k5c_A Uncharacterized protein 22.2 15 0.00052 29.4 -0.5 12 193-204 8-19 (95)
153 3v43_A Histone acetyltransfera 21.7 69 0.0024 26.2 3.4 44 157-200 4-62 (112)
154 2l3k_A Rhombotin-2, linker, LI 21.2 54 0.0018 26.9 2.7 34 158-191 36-71 (123)
155 1x62_A C-terminal LIM domain p 20.9 45 0.0015 25.0 2.0 38 158-204 15-52 (79)
156 1fp0_A KAP-1 corepressor; PHD 20.5 38 0.0013 27.1 1.5 45 157-202 24-72 (88)
157 2l4z_A DNA endonuclease RBBP8, 20.2 50 0.0017 27.4 2.3 13 159-171 62-74 (123)
158 3vhs_A ATPase wrnip1; zinc fin 20.1 33 0.0011 21.5 0.8 26 242-267 4-29 (29)
159 2d8y_A Eplin protein; LIM doma 20.0 81 0.0028 24.2 3.4 32 158-189 42-74 (91)
No 1
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=136.12 Aligned_cols=81 Identities=31% Similarity=0.595 Sum_probs=71.8
Q ss_pred cchhhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhH
Q 044354 147 SVLTCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQE 226 (426)
Q Consensus 147 ~~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E 226 (426)
.....+..+.+.+.|+||++++.+|++++|||+||..||..|+......||.||..+.....+.+|..|.++++.|+|.+
T Consensus 41 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 41 PFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred hHHHHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 33455677888999999999999999999999999999999998656799999999987667889999999999999876
Q ss_pred H
Q 044354 227 V 227 (426)
Q Consensus 227 ~ 227 (426)
.
T Consensus 121 ~ 121 (124)
T 3fl2_A 121 G 121 (124)
T ss_dssp T
T ss_pred c
Confidence 4
No 2
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.55 E-value=2.4e-15 Score=127.87 Aligned_cols=97 Identities=23% Similarity=0.462 Sum_probs=78.1
Q ss_pred hhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHH
Q 044354 153 DKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKA 232 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~ 232 (426)
..+.+.+.|+||++++.+|++++|||+||..||..|+......||+|+..+........+..+.+++..+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l---------- 87 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL---------- 87 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC----------
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh----------
Confidence 4466779999999999999999999999999999999876778999999988654444455555555443
Q ss_pred HHHhcccccccCccccccccccCchhHHHHhhhccc
Q 044354 233 AAALNSREAEHQSPQRGFHNNVRTRSMRSSATSSGD 268 (426)
Q Consensus 233 ~~~~~~~~~~~~~pc~gC~~~i~~~~lR~H~~~c~~ 268 (426)
....+..||+..+....+..|+..|..
T Consensus 88 ---------~v~C~~~gC~~~~~~~~~~~H~~~C~~ 114 (116)
T 1rmd_A 88 ---------MVKCPAQDCNEEVSLEKYNHHVSSHKE 114 (116)
T ss_dssp ---------EEECCSTTCCCEEEHHHHHHHHHTSCC
T ss_pred ---------cCCCCCCCCcchhhHhHHHHHHHHhhc
Confidence 122445699999999999999999864
No 3
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.55 E-value=1.9e-15 Score=135.28 Aligned_cols=77 Identities=30% Similarity=0.647 Sum_probs=69.2
Q ss_pred hhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHH
Q 044354 151 CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEV 227 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~ 227 (426)
.+..+.+.+.|+||++++.+|++++|||+||..||..|+......||+|+..+.....+.+|..|.++++.|++.+.
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred HHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 55667788999999999999999999999999999999987566899999999976578899999999999988654
No 4
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.55 E-value=1.8e-15 Score=129.51 Aligned_cols=99 Identities=24% Similarity=0.454 Sum_probs=79.7
Q ss_pred hhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHH
Q 044354 151 CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEAR 230 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r 230 (426)
++..+.+.+.|+||++++.+|++++|||+||..||..|+......||+|+..+... .+..+..+..+|..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~l~~~i~~l-------- 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN-QLFPDNFAKREILSL-------- 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG-GCEECHHHHHHHHTS--------
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH-hcccCHHHHHHHccc--------
Confidence 45567788999999999999999999999999999999987666999999998853 344566666655544
Q ss_pred HHHHHhcccccccCccccccccccCchhHHHHhhhcccc
Q 044354 231 KAAAALNSREAEHQSPQRGFHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 231 ~~~~~~~~~~~~~~~pc~gC~~~i~~~~lR~H~~~c~~~ 269 (426)
...++..||...+....+..|+..|...
T Consensus 82 -----------~v~C~n~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 82 -----------MVKCPNEGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp -----------EEECSSTTCCCEEEGGGSGGGTSSSCC-
T ss_pred -----------eeECCCCCCCCEEeeHHHHHHHHHchhh
Confidence 1123347999999999999999999855
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=121.67 Aligned_cols=69 Identities=28% Similarity=0.637 Sum_probs=61.5
Q ss_pred hhcccccccccccCCCCceecc-CCCcchhhhHHhhhhhc-CCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 154 KLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKC-GKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~-~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
.+.+.+.|+||+++|.+|++++ |||+||..||..|+... ...||+|+..+.....+..|..|.++++.|
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNF 79 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHH
Confidence 3567899999999999999999 99999999999999753 368999999986666788999999999988
No 6
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.53 E-value=2.1e-15 Score=128.11 Aligned_cols=81 Identities=38% Similarity=0.790 Sum_probs=68.9
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC------CCCcchhHHHHHHHHHHChhHHH
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN------GRSCTVNTVLWNTIQLLFPQEVE 228 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~------~~~l~~N~~L~~lI~~l~p~E~~ 228 (426)
+.+++.|+||++++.+|++++|||+||..||..|+......||+|+..+.. ...+.+|..|..++..+++.+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~ 91 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECK 91 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHH
Confidence 456789999999999999999999999999999998767899999999863 24567899999999999999887
Q ss_pred HHHHHHH
Q 044354 229 ARKAAAA 235 (426)
Q Consensus 229 ~r~~~~~ 235 (426)
.+....+
T Consensus 92 ~r~~~~e 98 (115)
T 3l11_A 92 LRASGQE 98 (115)
T ss_dssp HHHHC--
T ss_pred HHHhhhh
Confidence 7655443
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.52 E-value=3.8e-15 Score=117.77 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=60.6
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
+.+.+.|+||+++|.+|++++|||+||..||..|+..+...||+|+..+.. ..+..|..|.++|+.|.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-hhCccCHHHHHHHHHHH
Confidence 456799999999999999999999999999999998767899999999874 45778999999999883
No 8
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.51 E-value=4.1e-15 Score=131.85 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=76.6
Q ss_pred hhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC--------CcchhHHHHHHHHHH
Q 044354 151 CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR--------SCTVNTVLWNTIQLL 222 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~--------~l~~N~~L~~lI~~l 222 (426)
+...+.+.+.|+||++++.+|++++|||+||..||..|+......||+|+..+.... .+..+..+...|..+
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 346778899999999999999999999999999999999875668999999764221 122333333333322
Q ss_pred ChhHHHHHHHHHHhcccccccCccccccccccCchhHHH-Hhhhcccc
Q 044354 223 FPQEVEARKAAAALNSREAEHQSPQRGFHNNVRTRSMRS-SATSSGDA 269 (426)
Q Consensus 223 ~p~E~~~r~~~~~~~~~~~~~~~pc~gC~~~i~~~~lR~-H~~~c~~~ 269 (426)
...++..||...+.+.+++. |+..|...
T Consensus 104 -------------------~v~Cpn~GC~~~~~l~~l~~~H~~~~~~~ 132 (141)
T 3knv_A 104 -------------------PAVCPSDGCTWKGTLKEYESCHEGRCPLM 132 (141)
T ss_dssp -------------------EEECCSTTCCCEEEHHHHHHHTTTCCHHH
T ss_pred -------------------ccccCCCCCCCEeEHHHHHHHHHHHhHHH
Confidence 22344479999999999997 99999988
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.50 E-value=9.6e-15 Score=118.67 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=61.4
Q ss_pred hhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 154 KLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
.+.+.|.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++.. ..+..|..|.++|+.|.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE-SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999986 6799999999885 46888999999999984
No 10
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.49 E-value=3.3e-14 Score=119.54 Aligned_cols=76 Identities=28% Similarity=0.568 Sum_probs=66.3
Q ss_pred hhhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCC---CcchhHHHHHHHHHHChhH
Q 044354 151 CIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR---SCTVNTVLWNTIQLLFPQE 226 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~---~l~~N~~L~~lI~~l~p~E 226 (426)
.++.+.+.+.|+||++++.+|+++ +|||+||..||..|+.. ...||.|+..+.... .+..|..|.++++.+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 86 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGL 86 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTH
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhH
Confidence 355678889999999999999997 99999999999999987 589999999988642 5678999999999998864
Q ss_pred H
Q 044354 227 V 227 (426)
Q Consensus 227 ~ 227 (426)
.
T Consensus 87 ~ 87 (108)
T 2ckl_A 87 F 87 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=3.3e-14 Score=118.69 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred hhhcccccccccccCCCCceeccCC-CcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 153 DKLREELSCAICLEICFEPSTTTCG-HSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCg-H~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
..+.++|.||||+++|.+||+++|| |+||..||..|+.. ...||+|+.++.. ..+.+|..|.++|+.|.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence 3456789999999999999999999 99999999999986 6789999999985 46788999999999983
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.46 E-value=2.9e-14 Score=125.27 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=54.3
Q ss_pred hhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCC-CcchhHHHHHHHHHH
Q 044354 153 DKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR-SCTVNTVLWNTIQLL 222 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~-~l~~N~~L~~lI~~l 222 (426)
+.+.+++.|+||++.+.+|++++|||+||..||..|+.. ...||+||+.+.... .+.+|..+..++..+
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKTYSLVLDNCINKMVNNL 117 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEEECHHHHHHHHHHHTTS
T ss_pred HhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCCCccchhHHHHHHHHHh
Confidence 345677899999999999999999999999999999976 678999999987532 233444455555443
No 13
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=128.89 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=79.9
Q ss_pred hhhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHH--
Q 044354 150 TCIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEV-- 227 (426)
Q Consensus 150 ~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~-- 227 (426)
.+++.+.+.+.|+||++++.+|++++|||+||..||..|+......||.|+..+.... +..+..+..+|..+...-.
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~~~~i~~l~v~C~n~ 88 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ-LFPDNFAKREILSLMVKCPNE 88 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG-CEECHHHHHHHHTSEEECCST
T ss_pred hhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh-hhhhHHHHHHHhhcccCCCCC
Confidence 3566788899999999999999999999999999999999876679999999988543 4456667676665421100
Q ss_pred -------HHHHHHHHhcccccccCccccccccccCchhHHHHhhhc
Q 044354 228 -------EARKAAAALNSREAEHQSPQRGFHNNVRTRSMRSSATSS 266 (426)
Q Consensus 228 -------~~r~~~~~~~~~~~~~~~pc~gC~~~i~~~~lR~H~~~c 266 (426)
......+...... ...+|.+|+..+....+..|....
T Consensus 89 GC~~~~~~~~l~~H~~~C~~--~~v~C~~C~~~~~r~~l~~H~~~~ 132 (170)
T 3hcs_A 89 GCLHKMELRHLEDHQAHCEF--ALMDCPQCQRPFQKFHINIHILKD 132 (170)
T ss_dssp TCCCEEEGGGHHHHHTTCTT--SEEECTTTCCEEEGGGHHHHHHHT
T ss_pred CCCceecHhHHHHHHhcCCc--eeeECCCCChHHHHHHHHHHhhhh
Confidence 0111122212222 234566888888888888888533
No 14
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.45 E-value=4.5e-14 Score=127.25 Aligned_cols=75 Identities=32% Similarity=0.651 Sum_probs=64.0
Q ss_pred hhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhH
Q 044354 152 IDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQE 226 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E 226 (426)
...+.+.+.|+||++++.+|+++ +|||+||..||..|+......||+|+..+.....+.+|..|.++|..+++..
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 34466779999999999999997 9999999999999998767889999999987777889999999999997753
No 15
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=116.01 Aligned_cols=72 Identities=24% Similarity=0.575 Sum_probs=63.3
Q ss_pred hhhhhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 149 LTCIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 149 ~~~l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
...++.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||.|+..+.. ..+..|..|.++++.+
T Consensus 13 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE-PDLKNNRILDELVKSL 85 (99)
T ss_dssp GGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHH
T ss_pred hhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh-hhCCcCHHHHHHHHHH
Confidence 34566677889999999999999998 89999999999999986 6799999999884 4578899999999988
No 16
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.45 E-value=6.6e-14 Score=117.32 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred hhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 154 KLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
.+.+.+.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++.. ..+.+|..|.++|+.|.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 35678999999999999999999999999999999985 6799999999985 56888999999999984
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=118.38 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=61.4
Q ss_pred cchhhhhhhcccccccccccCCCCcee-ccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 147 SVLTCIDKLREELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 147 ~~~~~l~~l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
........+.+.+.|+||++++.+|++ ++|||+||..||..|+......||+||..+.. ..+..+..+.++++.+
T Consensus 11 ~~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 11 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL-RELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECTTHHHHHHHH
T ss_pred CcccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH-HHhHhhHHHHHHHHHH
Confidence 334556678889999999999999999 99999999999999998855799999999874 4455566666666554
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=108.24 Aligned_cols=58 Identities=31% Similarity=0.710 Sum_probs=48.8
Q ss_pred hhhhcccccccccccCCCCceecc-CCCcchhhhHHhhhhhcC-CCCccccccccCCCCc
Q 044354 152 IDKLREELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKCG-KKCPKCRQLISNGRSC 209 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~~-~~CP~CR~~i~~~~~l 209 (426)
++.+.+.+.|+||+++|.+|++++ |||+||..||..|+.... ..||+||..+...+.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 344667899999999999999999 999999999999998633 6899999986654443
No 19
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=2.2e-13 Score=116.21 Aligned_cols=70 Identities=30% Similarity=0.575 Sum_probs=62.5
Q ss_pred hhhhhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 149 LTCIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 149 ~~~l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
...+..+.+.+.|+||++++.+|+++ +|||+||..||..|+. ..||+|+..+. ...+..|..|.+++..+
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHH
Confidence 44567788899999999999999999 9999999999999986 68999999986 45678899999999987
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=109.73 Aligned_cols=63 Identities=24% Similarity=0.452 Sum_probs=52.6
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHH
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQ 220 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~ 220 (426)
....+.|+||++.+.+|++++|||+||..||..|+.. ...||+|+..+. ..+..|..|...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHHHHHS
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHHHHHH
Confidence 4466899999999999999999999999999999976 779999999987 35566655554443
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=1.4e-13 Score=131.89 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=61.0
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHCh
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFP 224 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p 224 (426)
+.+.+.||||+++|.+||+++|||+||..||..|+..++..||+|+.++.. ..+.+|..|.++|+.|+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHHT
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-hcCcccHHHHHHHHHHHH
Confidence 346799999999999999999999999999999998756669999999974 467889999999998843
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=4.7e-14 Score=112.10 Aligned_cols=64 Identities=31% Similarity=0.714 Sum_probs=52.2
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhc-----CCCCccccccccCCCCcchhHHHH
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC-----GKKCPKCRQLISNGRSCTVNTVLW 216 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~-----~~~CP~CR~~i~~~~~l~~N~~L~ 216 (426)
++.+.+.+.|+||++.+.+|++++|||+||..||..|+... ...||.|+..+.. ..+..|..|.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~ 81 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVA 81 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHH
Confidence 34566789999999999999999999999999999999773 5689999999874 3445554443
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-14 Score=114.42 Aligned_cols=63 Identities=33% Similarity=0.733 Sum_probs=51.6
Q ss_pred hhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhc------CCCCccccccccCCCCcchhHHHH
Q 044354 153 DKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC------GKKCPKCRQLISNGRSCTVNTVLW 216 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~------~~~CP~CR~~i~~~~~l~~N~~L~ 216 (426)
+.+.+.+.|+||++.+.+|++++|||+||..||..|+... ...||.|+..+.. ..+..|..|.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~ 75 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLA 75 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHH
Confidence 3466789999999999999999999999999999998763 5689999999874 3445554443
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=104.91 Aligned_cols=55 Identities=25% Similarity=0.756 Sum_probs=48.3
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+..+.+.+.|+||++.+.+|++++|||+||..||..|+......||+|+..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3456678999999999999999999999999999999975567899999998753
No 25
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-13 Score=111.52 Aligned_cols=66 Identities=20% Similarity=0.428 Sum_probs=57.5
Q ss_pred cccccccccccCCCCceecc-CCCcchhhhHHhhhhhc-----CCCCcc--cccc-ccCCCCcchhHHHHHHHHHH
Q 044354 156 REELSCAICLEICFEPSTTT-CGHSFCKKCLRSAADKC-----GKKCPK--CRQL-ISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lp-CgH~FC~~CI~~~l~~~-----~~~CP~--CR~~-i~~~~~l~~N~~L~~lI~~l 222 (426)
.+.|.||||+++|.+||+++ |||+||..||..|+... ...||+ |+.. +. ...+.+|..|..+|+.|
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENH 79 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHH
Confidence 35699999999999999996 99999999999999763 368999 9876 54 45688899999999988
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=104.94 Aligned_cols=56 Identities=27% Similarity=0.695 Sum_probs=49.0
Q ss_pred hhhhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 151 CIDKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
.++.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||+|+..+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 344567789999999999999997 99999999999999977 789999999988543
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7e-14 Score=111.09 Aligned_cols=63 Identities=35% Similarity=0.789 Sum_probs=51.8
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhh-----cCCCCccccccccCCCCcchhHHH
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK-----CGKKCPKCRQLISNGRSCTVNTVL 215 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~-----~~~~CP~CR~~i~~~~~l~~N~~L 215 (426)
+..+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||.|+..+.. ..+..|..|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l 80 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHV 80 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHH
Confidence 4456778999999999999999999999999999999876 35789999999885 334445443
No 28
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.34 E-value=5.9e-13 Score=122.71 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=60.8
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHC
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLF 223 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~ 223 (426)
+.+.|.||||+++|.+||+++|||+||..||..|+...+..||+|+.++.. ..+.+|..|.++|+.|.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence 457799999999999999999999999999999998755579999999875 46888999999999883
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.9e-13 Score=103.50 Aligned_cols=54 Identities=41% Similarity=0.936 Sum_probs=47.5
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhh--cCCCCccccccccC
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKCRQLISN 205 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~--~~~~CP~CR~~i~~ 205 (426)
++.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||+|+..+..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456778999999999999999999999999999999963 35689999998874
No 30
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=3.4e-13 Score=113.13 Aligned_cols=70 Identities=34% Similarity=0.710 Sum_probs=56.6
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcC--CCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCG--KKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~--~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
+..+.+.+.|+||++.+.+|++++|||+||..||..|+.... ..||+|+..+.. ..+..|..+.++++.+
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~ 86 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEEL 86 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHH
T ss_pred HHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHH
Confidence 445667799999999999999999999999999999997532 589999999885 3455566666666665
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=99.63 Aligned_cols=49 Identities=45% Similarity=0.996 Sum_probs=43.3
Q ss_pred hhhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhh--cCCCCccc
Q 044354 151 CIDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKC 199 (426)
Q Consensus 151 ~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~--~~~~CP~C 199 (426)
.++.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34557788999999999999999999999999999999975 35689998
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=94.95 Aligned_cols=48 Identities=40% Similarity=0.915 Sum_probs=41.9
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhh--cCCCCccc
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADK--CGKKCPKC 199 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~--~~~~CP~C 199 (426)
++.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3446678999999999999999999999999999999754 46789998
No 33
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=100.49 Aligned_cols=49 Identities=41% Similarity=0.904 Sum_probs=44.3
Q ss_pred cccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 156 REELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.+.+.|+||++.+.+|++++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 356899999999999999999999999999999976 5799999998763
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.4e-12 Score=102.35 Aligned_cols=53 Identities=40% Similarity=0.926 Sum_probs=46.6
Q ss_pred hhhcccccccccccCCCC----ceeccCCCcchhhhHHhhhhhc--CCCCccccccccC
Q 044354 153 DKLREELSCAICLEICFE----PSTTTCGHSFCKKCLRSAADKC--GKKCPKCRQLISN 205 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~----Pv~lpCgH~FC~~CI~~~l~~~--~~~CP~CR~~i~~ 205 (426)
+.+.+.+.|+||++.+.+ |+.++|||+||..||..|+... ...||+|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345677999999999998 9999999999999999999874 4789999998775
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-12 Score=98.12 Aligned_cols=49 Identities=39% Similarity=0.922 Sum_probs=44.2
Q ss_pred hcccccccccccCCCCc-------eeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 155 LREELSCAICLEICFEP-------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~P-------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+.+.+.|+||++.+.+| +.++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 45678999999999887 88999999999999999987 779999999876
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.18 E-value=5.4e-12 Score=97.34 Aligned_cols=51 Identities=39% Similarity=0.933 Sum_probs=45.1
Q ss_pred cccccccccccCCCCc-------eeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 156 REELSCAICLEICFEP-------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P-------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
.+.+.|+||++.+.+| +.++|||+||..||..|+.. ...||+||..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 3568999999999888 88999999999999999987 679999999988543
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=8.7e-12 Score=95.22 Aligned_cols=50 Identities=22% Similarity=0.686 Sum_probs=43.4
Q ss_pred cccccccccc-CCCCc----eeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 157 EELSCAICLE-ICFEP----STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 157 ~~l~CpIC~~-~l~~P----v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+++.|+||++ ++.+| ++++|||+||..||..|+......||+|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3578999999 89888 46899999999999999876567899999998753
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=6.4e-12 Score=97.08 Aligned_cols=53 Identities=32% Similarity=0.847 Sum_probs=46.2
Q ss_pred hhhhcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 152 IDKLREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 152 l~~l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+..+.+.+.|+||++.+.+ ++++|||.||..||..|+.. ...||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCC
Confidence 3445677899999999999 88999999999999999974 78999999998854
No 39
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.2e-11 Score=93.15 Aligned_cols=49 Identities=39% Similarity=0.933 Sum_probs=43.8
Q ss_pred ccccccccccCCCCc-------eeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 157 EELSCAICLEICFEP-------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P-------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+.+.|+||++.+.+| +.++|||.||..||..|+.. ...||+|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 357899999999887 78999999999999999987 77999999998854
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=3.5e-11 Score=94.84 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=43.6
Q ss_pred hcccccccccccCCCCc---eeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 155 LREELSCAICLEICFEP---STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~P---v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
+...+.|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 44668999999999866 44799999999999999976 57999999998754
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.10 E-value=4.2e-11 Score=88.07 Aligned_cols=48 Identities=27% Similarity=0.671 Sum_probs=42.0
Q ss_pred cccccccccccCCCC---ceecc-CCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICFE---PSTTT-CGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~---Pv~lp-CgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
++...|+||++.+.+ ++.++ |||.||..||..|+.. ...||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456889999999987 77787 9999999999999977 678999998764
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=93.60 Aligned_cols=52 Identities=31% Similarity=0.557 Sum_probs=44.0
Q ss_pred hhcccccccccccCCCCcee---ccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 154 KLREELSCAICLEICFEPST---TTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~---lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
.+.....|+||++.+..+.. ++|+|.||..||..|+.. ...||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 34567899999999987754 499999999999999987 56999999998753
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.09 E-value=4.1e-11 Score=95.99 Aligned_cols=53 Identities=21% Similarity=0.567 Sum_probs=44.0
Q ss_pred hcccccccccccCCC--Cceecc--CCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 155 LREELSCAICLEICF--EPSTTT--CGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 155 l~~~l~CpIC~~~l~--~Pv~lp--CgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
+++++.||||++.+. ++++++ |||.||..|+..++......||.||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 567799999999884 455555 99999999999998766789999999988643
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.09 E-value=4.8e-11 Score=87.63 Aligned_cols=47 Identities=30% Similarity=0.684 Sum_probs=41.3
Q ss_pred ccccccccccCCCC----ceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFE----PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~----Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+...|+||++.+.+ ++.++|||.||..||..|+.. ...||+|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 34789999999866 777999999999999999988 489999998775
No 45
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=3.8e-11 Score=94.65 Aligned_cols=53 Identities=32% Similarity=0.722 Sum_probs=46.4
Q ss_pred chhhhhhhcccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 148 VLTCIDKLREELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 148 ~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
....+..+.+.+.|+||++.+.+|+++||||. ||..|+..| ..||+||..+..
T Consensus 14 ~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 14 TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HHHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 34445667788999999999999999999999 999999988 689999998874
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.08 E-value=5e-11 Score=91.39 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=42.6
Q ss_pred ccccccccccCCCCc-eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEP-STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P-v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
....|+||++.+.+| +.++|||.||..|+..|+.. ...||+|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 457899999999997 67899999999999999987 6799999998764
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=6.8e-11 Score=91.01 Aligned_cols=49 Identities=35% Similarity=0.617 Sum_probs=41.9
Q ss_pred cccccccccccCCC---CceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 156 REELSCAICLEICF---EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~---~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.....|+||++.+. .++.++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 35578999999884 4577999999999999999987 6689999998874
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=3.3e-11 Score=89.97 Aligned_cols=45 Identities=29% Similarity=0.686 Sum_probs=40.4
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+.+.|+||++.+.+|++++|||+||..||..| ...||+|++.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 56899999999999999999999999999873 5689999998774
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.06 E-value=6.1e-11 Score=114.91 Aligned_cols=69 Identities=20% Similarity=0.432 Sum_probs=59.7
Q ss_pred hhhcccccccccccCCCCceec-cCCCcchhhhHHhhhhhc-CCCCcc--ccccccCCCCcchhHHHHHHHHHH
Q 044354 153 DKLREELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKC-GKKCPK--CRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 153 ~~l~~~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~-~~~CP~--CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
......+.||||+++|.+||+. .|||+||..||..|+... ...||+ |++.+. ...+.+|..|..+++.+
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHH
Confidence 3456789999999999999985 999999999999999763 458999 999887 45688899999999886
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=7.3e-11 Score=92.53 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=43.1
Q ss_pred cccccccccccCCCCc---eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 156 REELSCAICLEICFEP---STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P---v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.+...|+||++.+..+ +.++|+|.||..||..|+.. ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4567899999999877 66899999999999999987 6799999998764
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.03 E-value=7.4e-11 Score=96.38 Aligned_cols=48 Identities=29% Similarity=0.693 Sum_probs=42.3
Q ss_pred ccccccccccCCCC---ceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFE---PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~---Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+...|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 55789999999887 777999999999999999976 6799999998763
No 52
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=90.93 Aligned_cols=52 Identities=33% Similarity=0.714 Sum_probs=45.0
Q ss_pred hhhhhhhcccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 149 LTCIDKLREELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 149 ~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
...+..+.+.+.|+||++.+.+|+++||||. ||..|+.. ...||+||..+..
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 4455667778999999999999999999999 99999964 3689999999875
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.97 E-value=2.7e-10 Score=96.01 Aligned_cols=48 Identities=31% Similarity=0.654 Sum_probs=40.5
Q ss_pred cccccccccCCCCce------------------eccCCCcchhhhHHhhhhh----cCCCCccccccccC
Q 044354 158 ELSCAICLEICFEPS------------------TTTCGHSFCKKCLRSAADK----CGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv------------------~lpCgH~FC~~CI~~~l~~----~~~~CP~CR~~i~~ 205 (426)
+..|+||++.|..|+ .++|+|.||..||..|+.. ....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 358999999997764 6899999999999999953 25689999998864
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=1.9e-10 Score=98.23 Aligned_cols=50 Identities=40% Similarity=0.953 Sum_probs=44.7
Q ss_pred ccccccccccCCCCc-------eeccCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 157 EELSCAICLEICFEP-------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P-------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
+.+.|+||++.+.+| +.++|||+||..||..|+.. ...||+|++.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccc
Confidence 568999999999998 88999999999999999987 669999999987543
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.90 E-value=2.6e-10 Score=91.28 Aligned_cols=52 Identities=29% Similarity=0.753 Sum_probs=45.2
Q ss_pred hhhhhhhcccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 149 LTCIDKLREELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 149 ~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
...++.+.+...|+||++.+.+++.+||||. ||..|+..|. .||+||..+..
T Consensus 9 ~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 3445667778899999999999999999999 9999998763 89999998875
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.86 E-value=7.5e-10 Score=112.92 Aligned_cols=52 Identities=33% Similarity=0.602 Sum_probs=45.9
Q ss_pred hcccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 155 LREELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
......|+||++.+.+|+.++|||.||..|+..|+......||+||..+...
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3445799999999999999999999999999999985578999999988753
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.5e-09 Score=85.52 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=39.4
Q ss_pred ccccccccccCCCC--------------ceec-cCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFE--------------PSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~--------------Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
++..|+||++.|.+ ++.+ +|+|.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 34679999998866 4455 49999999999999987 5799999998763
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=3.1e-09 Score=81.48 Aligned_cols=48 Identities=29% Similarity=0.552 Sum_probs=42.6
Q ss_pred ccccccccccCCCCceec--cCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTT--TCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l--pCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
++..|+||++.+.+++.+ ||||. ||..|+..|+.. ...||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 457899999999999987 99999 899999999875 6789999998863
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=1.8e-09 Score=92.04 Aligned_cols=50 Identities=38% Similarity=0.920 Sum_probs=44.4
Q ss_pred cccccccccccCCCCc-------eeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 156 REELSCAICLEICFEP-------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~P-------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
.+.+.|+||++.+.++ +.++|||.||..||..|+.. ...||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChh
Confidence 4568899999999887 88899999999999999987 67999999998753
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=5.2e-09 Score=80.02 Aligned_cols=48 Identities=25% Similarity=0.537 Sum_probs=42.2
Q ss_pred ccccccccccCCCCceec--cCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTT--TCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l--pCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
....|+||++...+++++ ||||. ||..|+..|... ...||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 346899999999999887 99998 999999998866 5799999998863
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.70 E-value=6e-09 Score=104.94 Aligned_cols=54 Identities=33% Similarity=0.795 Sum_probs=47.7
Q ss_pred cchhhhhhhcccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 147 SVLTCIDKLREELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 147 ~~~~~l~~l~~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.....+..+.+.+.|+||++.+.+|+.+||||. ||..|+..| ..||+||..+..
T Consensus 284 ~~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 284 SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp CHHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cHHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 344557788889999999999999999999999 999999987 589999999874
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.67 E-value=6.2e-09 Score=79.47 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=43.2
Q ss_pred cccccccccCCCCceec-cCCCcchhhhHHhhhhhcCCCCccccccccCCC
Q 044354 158 ELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKCGKKCPKCRQLISNGR 207 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~ 207 (426)
.+.||||++++.+||++ +|||+||..||.+|+.. ..+||+++.++....
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhh
Confidence 37899999999999999 89999999999999987 356999999987543
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.64 E-value=1.5e-08 Score=85.68 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=39.5
Q ss_pred cccccccccCCCCc------------------eeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICFEP------------------STTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~~P------------------v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+..|+||++.|..+ +.++|+|.||..||..|+.. ...||+||..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 46799999998865 33789999999999999987 778999999864
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.8e-08 Score=78.36 Aligned_cols=44 Identities=25% Similarity=0.743 Sum_probs=39.5
Q ss_pred ccccccccccCCCCceeccCCCc-chhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTCGHS-FCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~-FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+...|+||++...+++.+||||. ||..|+.. ...||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 45789999999999999999999 99999984 3689999998875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=6.8e-09 Score=84.96 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=38.2
Q ss_pred ccccccccccCCCCceec---cCCCcchhhhHHhhhhhc-------CCCCcc--cccc
Q 044354 157 EELSCAICLEICFEPSTT---TCGHSFCKKCLRSAADKC-------GKKCPK--CRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l---pCgH~FC~~CI~~~l~~~-------~~~CP~--CR~~ 202 (426)
+.+.|+||++.+..|+++ +|||.||..||..++... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 358899999999988664 799999999999997641 247999 9887
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.2e-07 Score=74.56 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=41.6
Q ss_pred ccccccccccCC--CCceeccCC-----CcchhhhHHhhhhhcC-CCCccccccccCC
Q 044354 157 EELSCAICLEIC--FEPSTTTCG-----HSFCKKCLRSAADKCG-KKCPKCRQLISNG 206 (426)
Q Consensus 157 ~~l~CpIC~~~l--~~Pv~lpCg-----H~FC~~CI~~~l~~~~-~~CP~CR~~i~~~ 206 (426)
+...|.||++.+ .+++++||. |.|+..||..|+.... ..||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 346899999877 467889996 9999999999998743 6899999988753
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.34 E-value=6e-08 Score=83.46 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=0.0
Q ss_pred ccccccccCCCCc-----------------ee-ccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFEP-----------------ST-TTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~P-----------------v~-lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
-.|+||++.|..+ +. ++|+|.||..||..|+.. ...||+||..+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 5799999998763 22 589999999999999987 678999999865
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=63.68 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.4
Q ss_pred cccccccccCCCCcee-ccCCCcchhhhHHhhhhhc-CCCCccccccccC
Q 044354 158 ELSCAICLEICFEPST-TTCGHSFCKKCLRSAADKC-GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~~ 205 (426)
...|.||.+++..-.. ..|+|.|...||.+|+... ..+||+|+..+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3679999999975544 3799999999999999763 2789999988764
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.74 E-value=1.4e-05 Score=66.59 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=58.6
Q ss_pred ccccccccCCCC-ceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHHHHhc
Q 044354 159 LSCAICLEICFE-PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAAALN 237 (426)
Q Consensus 159 l~CpIC~~~l~~-Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~~~~~ 237 (426)
..|++|.-.+.. ..++||.|.||..|+..|.......||.|+.+|.......
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~--------------------------- 54 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT--------------------------- 54 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE---------------------------
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec---------------------------
Confidence 368899876664 3457999999999999998877889999999987422110
Q ss_pred ccccccCcc-ccccccc-cCchhHHHHhhhcccc
Q 044354 238 SREAEHQSP-QRGFHNN-VRTRSMRSSATSSGDA 269 (426)
Q Consensus 238 ~~~~~~~~p-c~gC~~~-i~~~~lR~H~~~c~~~ 269 (426)
. ...+.++ ..+|.+. +++.+|+.|+...=..
T Consensus 55 ~-~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~ 87 (101)
T 3vk6_A 55 R-GSLFMCSIVQGCKRTYLSQRDLQAHINHRHMR 87 (101)
T ss_dssp G-GGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTT
T ss_pred c-CCEEECCCCCCHHHHhcCHHHHHHHHHHHhhh
Confidence 1 1222333 6788885 5566799888765533
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.44 E-value=8.1e-05 Score=56.37 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=39.3
Q ss_pred ccccccccccCCCCceeccCC--C---cchhhhHHhhhhh-cCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPSTTTCG--H---SFCKKCLRSAADK-CGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCg--H---~FC~~CI~~~l~~-~~~~CP~CR~~i~ 204 (426)
+...|.||++...++.++||. | .|...||..|+.. +...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346899999887777778865 4 8999999999975 3578999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.36 E-value=4.7e-05 Score=76.44 Aligned_cols=49 Identities=29% Similarity=0.608 Sum_probs=38.8
Q ss_pred ccccccccccCCCC----cee----ccCCCcchhhhHHhhhhhcC----------CCCccccccccC
Q 044354 157 EELSCAICLEICFE----PST----TTCGHSFCKKCLRSAADKCG----------KKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~----Pv~----lpCgH~FC~~CI~~~l~~~~----------~~CP~CR~~i~~ 205 (426)
....|+||+..+.. |.. ..|+|.|+..||.+|+.... ..||.|++++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45689999998876 322 37999999999999997521 369999999874
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.91 E-value=0.00044 Score=77.40 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=61.5
Q ss_pred hhcccccccccccCCCCceeccCC-CcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChh
Q 044354 154 KLREELSCAICLEICFEPSTTTCG-HSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQ 225 (426)
Q Consensus 154 ~l~~~l~CpIC~~~l~~Pv~lpCg-H~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~ 225 (426)
.+.++|.|||-.+++.+||+++.| ++|-..+|.+|+.. ..+||+-+.++.. ..+.+|..|...|+.|+..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHHHH
Confidence 355789999999999999999998 69999999999987 6799999999985 4578899999999999443
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.97 E-value=0.0024 Score=52.16 Aligned_cols=32 Identities=28% Similarity=0.769 Sum_probs=27.3
Q ss_pred ccccccccccC-CCCcee--ccCCCcchhhhHHhh
Q 044354 157 EELSCAICLEI-CFEPST--TTCGHSFCKKCLRSA 188 (426)
Q Consensus 157 ~~l~CpIC~~~-l~~Pv~--lpCgH~FC~~CI~~~ 188 (426)
+++.|+||.+. +..|+. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35889999975 678887 899999999999973
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.64 E-value=0.0071 Score=57.67 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=39.5
Q ss_pred cccccccccCCCCceec-cCCCcchhhhHHhhhhhc-CCCCccccccccC
Q 044354 158 ELSCAICLEICFEPSTT-TCGHSFCKKCLRSAADKC-GKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~l-pCgH~FC~~CI~~~l~~~-~~~CP~CR~~i~~ 205 (426)
...|.||.+++..-+.- .|+|.|...|+..|+... ...||.|+..+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56799999998866554 499999999999998763 4689999988664
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.092 Score=53.09 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=49.6
Q ss_pred hcccccccccccCCCCcee-ccCCCcchhhh--HHhhh-hhcCCCCccccccccCCCCcchhHHHHHHHHHH
Q 044354 155 LREELSCAICLEICFEPST-TTCGHSFCKKC--LRSAA-DKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLL 222 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~C--I~~~l-~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l 222 (426)
+.-.|.|||-...+..|+. ..|.|.-|.+- +..+. ....+.||+|.+.+.. ..|.++..+..++...
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHhc
Confidence 4456999999999999998 57999966544 22222 2346899999988773 4678888888887654
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.64 E-value=0.087 Score=43.36 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=36.9
Q ss_pred ccccccccccCCCCceeccC-CCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTC-GHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpC-gH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.-+.|..|.-..+. .+.| .|.+|..|+.-++.. +..||+|.+++..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 34789999876663 3455 599999999998876 7789999998875
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.25 E-value=0.18 Score=50.78 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=49.2
Q ss_pred hcccccccccccCCCCcee-ccCCCcchhhhH--Hhhh-hhcCCCCccccccccCCCCcchhHHHHHHHHH
Q 044354 155 LREELSCAICLEICFEPST-TTCGHSFCKKCL--RSAA-DKCGKKCPKCRQLISNGRSCTVNTVLWNTIQL 221 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI--~~~l-~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~ 221 (426)
+.-.|.|||-...+..|+. ..|.|.-|.+-. ..+. ....+.||+|.+.+.. ..|.++..+.+++..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 4456899999999999998 579999665432 2222 2346899999998773 467888888888764
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.72 E-value=0.41 Score=38.33 Aligned_cols=35 Identities=31% Similarity=0.686 Sum_probs=29.6
Q ss_pred ccccccccccCCCCceeccC----CCcchhhhHHhhhhh
Q 044354 157 EELSCAICLEICFEPSTTTC----GHSFCKKCLRSAADK 191 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpC----gH~FC~~CI~~~l~~ 191 (426)
..+.|.+|.+.+.+...+.| +|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45899999999999877666 699999999988764
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.68 E-value=2.8 Score=34.05 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=36.4
Q ss_pred cccccccccCCCC-----cee--ccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 158 ELSCAICLEICFE-----PST--TTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~-----Pv~--lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.-.|.||.+.+-- +.+ -.|+-..|..|+.--.+.+...||.|...+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3689999996532 222 25888899999987777777899999988763
No 80
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=57.35 E-value=6.1 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=36.2
Q ss_pred ccccccccccCCCC-ceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFE-PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+-|.|..|...|.. +....=|..||..|..... ..+|..|.++|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 44899999998875 3445678899999987655 5689999999884
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.43 E-value=7 Score=29.23 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=28.2
Q ss_pred ccccccccCCCCcee---ccCCCcchhhhHHhhhhhcCCCCccc
Q 044354 159 LSCAICLEICFEPST---TTCGHSFCKKCLRSAADKCGKKCPKC 199 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~---lpCgH~FC~~CI~~~l~~~~~~CP~C 199 (426)
..|-.|...+.+... ..|++.||..|=. ++...-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 359999988865543 4699999999943 333334579988
No 82
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=55.93 E-value=1.4 Score=29.50 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=10.0
Q ss_pred cccccccccCCCCce
Q 044354 158 ELSCAICLEICFEPS 172 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv 172 (426)
.|.||||+..+..+.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 477777777666553
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=53.67 E-value=6.6 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=35.8
Q ss_pred cccccccccCCCC---ceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 158 ELSCAICLEICFE---PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 158 ~l~CpIC~~~l~~---Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
-|.|..|...|.+ .....=|..||..|....+.. ...|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCc
Confidence 4789999998863 344567789999999886632 2289999998885
No 84
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.34 E-value=3.8 Score=30.53 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=24.3
Q ss_pred ccccccccCCCCc-----eec-c--CCCcchhhhHHhhhhh
Q 044354 159 LSCAICLEICFEP-----STT-T--CGHSFCKKCLRSAADK 191 (426)
Q Consensus 159 l~CpIC~~~l~~P-----v~l-p--CgH~FC~~CI~~~l~~ 191 (426)
-.||-|...+... ++- . |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4799998877643 332 3 8999999999888654
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.78 E-value=11 Score=30.37 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=31.1
Q ss_pred hcccccccccccCCCCceecc---CCCcchhhhHHhh------------h---hhcCCCCccccc
Q 044354 155 LREELSCAICLEICFEPSTTT---CGHSFCKKCLRSA------------A---DKCGKKCPKCRQ 201 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv~lp---CgH~FC~~CI~~~------------l---~~~~~~CP~CR~ 201 (426)
+..+-.|.||...- .-..+| |+-.|...|+.+. + ...++.||.|..
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 33567899998543 333444 8889999999986 1 112468999943
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.48 E-value=6.2 Score=30.12 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=33.0
Q ss_pred ccccccccccCCCCceec---cCCCcchhhhHHhhhhh---cCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTT---TCGHSFCKKCLRSAADK---CGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l---pCgH~FC~~CI~~~l~~---~~~~CP~CR~~i~~ 205 (426)
+...|+||......-.++ .|..-|...|+.-.... ..+.||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 446799998876442233 57778888998654322 35789999876553
No 87
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.47 E-value=2.3 Score=37.70 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=31.1
Q ss_pred ccccccccccCCC---Cc--eeccCCCcchhhhHHhhhhhcCCCCccccc
Q 044354 157 EELSCAICLEICF---EP--STTTCGHSFCKKCLRSAADKCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~---~P--v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~ 201 (426)
..-.|.+|...|. ++ +...|.|.+|..|-...-....+.|-+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 3578999998653 22 225799999999984322334567888865
No 88
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.09 E-value=3.2 Score=32.82 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=20.9
Q ss_pred cccccccCCC-----Cceecc-CCCcchhhhHHhh
Q 044354 160 SCAICLEICF-----EPSTTT-CGHSFCKKCLRSA 188 (426)
Q Consensus 160 ~CpIC~~~l~-----~Pv~lp-CgH~FC~~CI~~~ 188 (426)
-||-|...+. .+++-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4888876442 224444 9999999999887
No 89
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.89 E-value=12 Score=32.71 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=35.2
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+-|.|..|...|.......=|..||..|....+ ...|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc---cccccccccccCC
Confidence 448899999888654444567889999998766 4589999888764
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.83 E-value=9.6 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=29.6
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhh----------hcCCCCccccc
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD----------KCGKKCPKCRQ 201 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~----------~~~~~CP~CR~ 201 (426)
+..|.||.+-=.--.--.|-..||..||...+. ...+.||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 367999887332101126889999999986542 34678999964
No 91
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=49.61 E-value=12 Score=28.32 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=30.7
Q ss_pred cccccccccCCCCcee-ccCCCcchhhhHHhhhhh---cCCCCccccccc
Q 044354 158 ELSCAICLEICFEPST-TTCGHSFCKKCLRSAADK---CGKKCPKCRQLI 203 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~---~~~~CP~CR~~i 203 (426)
...|.||.+-- +-+. -.|...|+..|+...+.. +.+.||.|....
T Consensus 12 ~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 35699998642 2111 268899999999766543 357899997543
No 92
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.25 E-value=7.6 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=23.0
Q ss_pred cccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 158 ELSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
...|.+|...|.--.. -.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3579999997763221 379999999998654
No 93
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=48.02 E-value=2.5 Score=41.59 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=33.2
Q ss_pred cccccccccccCCCCceec----cCC--CcchhhhHHhhhhhcCCCCcccccc
Q 044354 156 REELSCAICLEICFEPSTT----TCG--HSFCKKCLRSAADKCGKKCPKCRQL 202 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~l----pCg--H~FC~~CI~~~l~~~~~~CP~CR~~ 202 (426)
...-.||||.....-.++. .=| +.+|..|-..|-.. ..+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 3457899999876544443 133 57899999999765 6799999765
No 94
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.38 E-value=3.3 Score=35.29 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=29.9
Q ss_pred ccccccccccCCCCce----eccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPS----TTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv----~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
....|..|...|.-.. --.||.+||..|....... ...|-.|-..+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~~ 68 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFRA 68 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHHh
Confidence 3468999998876321 1479999999998765543 456888855433
No 95
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=46.51 E-value=9.6 Score=30.09 Aligned_cols=46 Identities=24% Similarity=0.475 Sum_probs=34.5
Q ss_pred ccccccccccCCCCc-eeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEP-STTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P-v~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+-|.|..|...|... ....=|..||..|....+ ..+|..|..+|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 347899998888643 334567889999986654 5689999998874
No 96
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.15 E-value=6.5 Score=32.79 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=18.4
Q ss_pred CceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 170 EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 170 ~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.+....||+.|+ .-+. ....||.|+.....
T Consensus 67 p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEIN-IPSRCPKCKSEWIE 96 (105)
T ss_dssp CCBBTTTCCBCC-----CCSS-CCSSCSSSCCCCBC
T ss_pred CcChhhCcCeec-----ccCC-CCCCCcCCCCCccC
Confidence 344467999882 1121 24689999876543
No 97
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.14 E-value=11 Score=33.41 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=32.9
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.-|.|..|...|.......=|..||..|....+ ..+|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCC
Confidence 347788888777654333456788999987655 4689999988874
No 98
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.10 E-value=9.9 Score=29.05 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=22.3
Q ss_pred ccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 159 LSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
-.|.+|...|.--.. -.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 579999987763222 369999999998643
No 99
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=43.93 E-value=5.9 Score=30.95 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=22.4
Q ss_pred cccccc--cccCCC-----Cceec------cCCCcchhhhHHhhh
Q 044354 158 ELSCAI--CLEICF-----EPSTT------TCGHSFCKKCLRSAA 189 (426)
Q Consensus 158 ~l~CpI--C~~~l~-----~Pv~l------pCgH~FC~~CI~~~l 189 (426)
...||- |...+. ..+.= .|+|.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 467886 776553 12333 599999999998874
No 100
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.96 E-value=14 Score=30.56 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=35.6
Q ss_pred ccccccccccCCC---CceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICF---EPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~---~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+-|.|..|...|. .+....=|..||..|....+.. ...|..|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 4488999998885 3455566789999999876532 1289999998874
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.66 E-value=6.6 Score=31.31 Aligned_cols=48 Identities=15% Similarity=0.533 Sum_probs=33.8
Q ss_pred ccccccccccCCC---Cceec--cCCCcchhhhHHhhhh-------hcCCCCcccccccc
Q 044354 157 EELSCAICLEICF---EPSTT--TCGHSFCKKCLRSAAD-------KCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~---~Pv~l--pCgH~FC~~CI~~~l~-------~~~~~CP~CR~~i~ 204 (426)
....|.||...-. +.+++ .|...|...|+..-+. .+.+.|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4678999998643 34443 5888999999876543 34678999976543
No 102
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=42.36 E-value=15 Score=28.72 Aligned_cols=21 Identities=57% Similarity=0.678 Sum_probs=16.3
Q ss_pred chhHHHHHHhhHHHHHHHhccc
Q 044354 372 EDDAVLALRLQREEFMEAFMGT 393 (426)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~ 393 (426)
.||.+||-|||||| .+||.+.
T Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~ 72 (74)
T 2c7n_A 52 QEDWELAERLQREE-EEAFASS 72 (74)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHHHHH-HHHhccC
Confidence 38899999999995 5677653
No 103
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.27 E-value=11 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=23.5
Q ss_pred cccccccccCCCCce----eccCCCcchhhhHHhhh
Q 044354 158 ELSCAICLEICFEPS----TTTCGHSFCKKCLRSAA 189 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv----~lpCgH~FC~~CI~~~l 189 (426)
...|.+|...|.--. --.||++||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 467999998775221 14799999999987654
No 104
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.81 E-value=2.3 Score=35.11 Aligned_cols=40 Identities=28% Similarity=0.646 Sum_probs=27.6
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..||+|...+..- =++.+|..|-..+.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccchhhc--cccCcchhhHHH
Confidence 7999999876531 234458888765443 357999988776
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=41.31 E-value=7.1 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=32.1
Q ss_pred ccccccccccCCC---Cceec--cCCCcchhhhHHhhh------hhcCCCCcccccccc
Q 044354 157 EELSCAICLEICF---EPSTT--TCGHSFCKKCLRSAA------DKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~---~Pv~l--pCgH~FC~~CI~~~l------~~~~~~CP~CR~~i~ 204 (426)
.+..|.||..... ..+++ .|...|...|+..-+ ....+.||.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4578999997642 23332 688889999987543 234678999976443
No 106
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.39 E-value=12 Score=28.64 Aligned_cols=32 Identities=28% Similarity=0.660 Sum_probs=23.3
Q ss_pred ccccccccccCCCCceeccC-CCcchhhhHHhhh
Q 044354 157 EELSCAICLEICFEPSTTTC-GHSFCKKCLRSAA 189 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpC-gH~FC~~CI~~~l 189 (426)
+..-|.||.+.-. -.-+.| |-.||..|+.+.-
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 3467999998722 223678 7899999998763
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.02 E-value=11 Score=29.36 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=23.0
Q ss_pred cccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 158 ELSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
...|.+|...|.--.. -.||++||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3579999988763221 379999999998754
No 108
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.85 E-value=9.2 Score=35.20 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=24.4
Q ss_pred hcccccccccccCCCCce----eccCCCcchhhhHHhh
Q 044354 155 LREELSCAICLEICFEPS----TTTCGHSFCKKCLRSA 188 (426)
Q Consensus 155 l~~~l~CpIC~~~l~~Pv----~lpCgH~FC~~CI~~~ 188 (426)
+.+...|.+|...|.--. .-.||+.||..|....
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 334578999998775221 1369999999998654
No 109
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.68 E-value=12 Score=29.43 Aligned_cols=32 Identities=22% Similarity=0.548 Sum_probs=23.6
Q ss_pred ccccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 157 EELSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
+...|.+|...|.--.. -.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34679999998753322 379999999998654
No 110
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.57 E-value=11 Score=30.14 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=22.9
Q ss_pred cccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 158 ELSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
...|.+|...|.--.. -.||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3579999987763321 479999999998654
No 111
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.18 E-value=6.3 Score=39.40 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=0.0
Q ss_pred ccccccccccCCCCc----eeccCCCcchhhhHHhhh
Q 044354 157 EELSCAICLEICFEP----STTTCGHSFCKKCLRSAA 189 (426)
Q Consensus 157 ~~l~CpIC~~~l~~P----v~lpCgH~FC~~CI~~~l 189 (426)
+...|.+|...|.-- ..-.||+.||..|....+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 346799999877522 124799999999987653
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.63 E-value=2.7 Score=36.40 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=29.9
Q ss_pred ccccccccccCCC---Cc--eeccCCCcchhhhHHhhhh---hcCCCCccccc
Q 044354 157 EELSCAICLEICF---EP--STTTCGHSFCKKCLRSAAD---KCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~---~P--v~lpCgH~FC~~CI~~~l~---~~~~~CP~CR~ 201 (426)
..-.|.+|...|. +. +-..|.|.+|..|-..... ...+.|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3468999999773 12 2257999999999764421 12456888865
No 113
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.52 E-value=10 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=24.2
Q ss_pred cccccccccccCCCCce----eccCCCcchhhhHHhh
Q 044354 156 REELSCAICLEICFEPS----TTTCGHSFCKKCLRSA 188 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv----~lpCgH~FC~~CI~~~ 188 (426)
.+...|.+|...|.--. .-.||+.||..|....
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34568999998776322 2479999999998754
No 114
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.71 E-value=16 Score=25.60 Aligned_cols=42 Identities=26% Similarity=0.602 Sum_probs=26.9
Q ss_pred cccccccCCCCc-ee--ccCCCcchhhhHHhhhh---hcCCCCccccc
Q 044354 160 SCAICLEICFEP-ST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQ 201 (426)
Q Consensus 160 ~CpIC~~~l~~P-v~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~ 201 (426)
.|.||...-..- ++ -.|...|...|+..-+. .+.+.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488887643222 22 25888899999965433 23568999964
No 115
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.35 E-value=13 Score=29.19 Aligned_cols=30 Identities=27% Similarity=0.630 Sum_probs=22.1
Q ss_pred ccccccccCCCCcee----ccCCCcchhhhHHhh
Q 044354 159 LSCAICLEICFEPST----TTCGHSFCKKCLRSA 188 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~----lpCgH~FC~~CI~~~ 188 (426)
..|.+|...|.--.. -.||++||..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 579999998743221 379999999997643
No 116
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=37.11 E-value=8.7 Score=34.29 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=35.3
Q ss_pred ccccccccccCCCC---ceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 157 EELSCAICLEICFE---PSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 157 ~~l~CpIC~~~l~~---Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
+-|.|..|...|.. +....=|..||..|....+.. ...|..|.+.|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 44889999888764 455566789999999876532 1169999998874
No 117
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.94 E-value=11 Score=41.57 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=34.5
Q ss_pred cccccccccccCCCCcee----------ccCCCcc--------------------hhhhHHhhhhh-------cCCCCcc
Q 044354 156 REELSCAICLEICFEPST----------TTCGHSF--------------------CKKCLRSAADK-------CGKKCPK 198 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~----------lpCgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 198 (426)
.|.-.|+-|+..+.+|.- +.||..| |..|-.++-.- ....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 355789999998877732 5677665 99999988432 2357999
Q ss_pred ccccc
Q 044354 199 CRQLI 203 (426)
Q Consensus 199 CR~~i 203 (426)
|.=.+
T Consensus 184 CGP~l 188 (772)
T 4g9i_A 184 CGPSY 188 (772)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 97544
No 118
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=35.82 E-value=16 Score=26.88 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=29.9
Q ss_pred ccccccccccCCCCcee--ccCCCcchhhhHHhhhh---hcCCCCccccc
Q 044354 157 EELSCAICLEICFEPST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~ 201 (426)
.+..|.||... .-++ -.|...|...|+..-+. ...+.||.|..
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34689999873 2222 25888999999986432 34578999965
No 119
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=35.69 E-value=11 Score=40.84 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=34.5
Q ss_pred cccccccccccCCCCcee----------ccCCCcc--------------------hhhhHHhhhhh-------cCCCCcc
Q 044354 156 REELSCAICLEICFEPST----------TTCGHSF--------------------CKKCLRSAADK-------CGKKCPK 198 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~----------lpCgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 198 (426)
.|.-.|+-|+..+.+|.- +.||..| |..|..++-.- ....||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 355789999988877632 5677664 99999988532 2357999
Q ss_pred ccccc
Q 044354 199 CRQLI 203 (426)
Q Consensus 199 CR~~i 203 (426)
|.=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96655
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.92 E-value=20 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=28.2
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhh----------hhcCCCCccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAA----------DKCGKKCPKCRQ 201 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l----------~~~~~~CP~CR~ 201 (426)
..|.||.+--.-..--.|-..||..||...+ ....+.|+.|..
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4699998632100112688999999998642 234589999943
No 121
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=34.92 E-value=13 Score=33.08 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.2
Q ss_pred cccccccccCCCCcee-ccCCCcchhhhHHhhhhh---cCCCCccccccc
Q 044354 158 ELSCAICLEICFEPST-TTCGHSFCKKCLRSAADK---CGKKCPKCRQLI 203 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~---~~~~CP~CR~~i 203 (426)
+..|.||.+-=. -+. -.|...|+..|+...+.. +.+.||.|+..-
T Consensus 4 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCe-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356999986422 111 258888888898665432 357899998643
No 122
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=34.30 E-value=12 Score=41.21 Aligned_cols=48 Identities=31% Similarity=0.640 Sum_probs=34.1
Q ss_pred cccccccccccCCCCcee----------ccCCCcc--------------------hhhhHHhhhhh-------cCCCCcc
Q 044354 156 REELSCAICLEICFEPST----------TTCGHSF--------------------CKKCLRSAADK-------CGKKCPK 198 (426)
Q Consensus 156 ~~~l~CpIC~~~l~~Pv~----------lpCgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 198 (426)
.|.-.|+-|+..+.+|.- +.||..| |..|..++-.- ....||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 355789999998877732 5677554 99999987432 2357999
Q ss_pred ccccc
Q 044354 199 CRQLI 203 (426)
Q Consensus 199 CR~~i 203 (426)
|.-.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 96544
No 123
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.56 E-value=26 Score=35.41 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=21.5
Q ss_pred cCCCcchhhhHHhhhhh---------cCCCCcccccc
Q 044354 175 TCGHSFCKKCLRSAADK---------CGKKCPKCRQL 202 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~---------~~~~CP~CR~~ 202 (426)
.|...||..||...+.. ..+.|=+|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 68899999999987521 35789999643
No 124
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.35 E-value=5.7 Score=31.98 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=28.6
Q ss_pred ccccccccccCCCC-ceec--cCCCcchhhhHHhhhh---hcCCCCccccc
Q 044354 157 EELSCAICLEICFE-PSTT--TCGHSFCKKCLRSAAD---KCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-Pv~l--pCgH~FC~~CI~~~l~---~~~~~CP~CR~ 201 (426)
+...|.||...-.. .+++ .|...|...|+..-+. ...+.||.|..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45679999875432 2222 5777788888864332 23567999965
No 125
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.78 E-value=4.7 Score=32.17 Aligned_cols=40 Identities=23% Similarity=0.692 Sum_probs=23.9
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
..||+|...+..-. ++.+|..|-..+... ..||-|..++.
T Consensus 3 ~~CP~C~~~l~~~~----~~~~C~~C~~~~~~~--afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNG----DTAHCETCAKDFSLQ--ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECS----SEEECTTTCCEEEEE--EECSSSCSCCC
T ss_pred CCCCCCCCccccCC----CceECccccccCCCc--ccCcchhhHHH
Confidence 67999987665321 133466665554333 26777777665
No 126
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.94 E-value=21 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=28.5
Q ss_pred cccccccccCCCCcee--ccCCCcchhhhHHhhhh---hcCCCCcccccc
Q 044354 158 ELSCAICLEICFEPST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQL 202 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~ 202 (426)
+..|.||.+-- -++ -.|...|...|+..-+. ...+.||.|...
T Consensus 9 ~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46799998632 122 25888888889875433 235789999754
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=31.69 E-value=30 Score=26.38 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=29.1
Q ss_pred ccccccccccCCCCceec--c--CC-CcchhhhHHhhhh-hcCCCCcccccccc
Q 044354 157 EELSCAICLEICFEPSTT--T--CG-HSFCKKCLRSAAD-KCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l--p--Cg-H~FC~~CI~~~l~-~~~~~CP~CR~~i~ 204 (426)
+...| ||.......++. . |. .-|...|+.-... ...+.||.|.....
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 45678 899865544332 3 65 5788888862111 23578999976543
No 128
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.49 E-value=15 Score=26.95 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=29.2
Q ss_pred ccccccccccCCCC-ceec---cCCCcchhhhHHhhhh----hcCCCCcccccc
Q 044354 157 EELSCAICLEICFE-PSTT---TCGHSFCKKCLRSAAD----KCGKKCPKCRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-Pv~l---pCgH~FC~~CI~~~l~----~~~~~CP~CR~~ 202 (426)
+...|+||...+.+ -..+ .|..-|...|+.-... ...+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45789999987742 2223 5776777778753321 135789999653
No 129
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.30 E-value=30 Score=25.72 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=32.3
Q ss_pred ccccccccccCCCC-ceeccCCCcchh-hhHHhhhhhcCCCCcccccccc
Q 044354 157 EELSCAICLEICFE-PSTTTCGHSFCK-KCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 157 ~~l~CpIC~~~l~~-Pv~lpCgH~FC~-~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
+-|.|..|...|.. +....=|..||. .|....+ ..+|..|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCcee
Confidence 34889999988775 444556788999 6987665 457888865443
No 130
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.57 E-value=22 Score=32.21 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=30.1
Q ss_pred ccccccccCCCCce----ec---cCCCcchhhhHHhh------hh----hcCCCCcccccccc
Q 044354 159 LSCAICLEICFEPS----TT---TCGHSFCKKCLRSA------AD----KCGKKCPKCRQLIS 204 (426)
Q Consensus 159 l~CpIC~~~l~~Pv----~l---pCgH~FC~~CI~~~------l~----~~~~~CP~CR~~i~ 204 (426)
..||||...+.+.- .+ .|..-|...|+.-. +. .....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999999876542 33 47777777787422 11 12679999987543
No 131
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.43 E-value=56 Score=26.23 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=27.9
Q ss_pred ccccccccccCCCCceec--c--CC-CcchhhhHHhhh-hhcCCCCccccccc
Q 044354 157 EELSCAICLEICFEPSTT--T--CG-HSFCKKCLRSAA-DKCGKKCPKCRQLI 203 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~l--p--Cg-H~FC~~CI~~~l-~~~~~~CP~CR~~i 203 (426)
+...| ||.......++. . |. .-|+..|+.-.. ....+.||.|....
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 45677 999866543321 3 54 468888886211 12357899997643
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.17 E-value=18 Score=29.95 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=11.3
Q ss_pred cchhhhHHhhhhh
Q 044354 179 SFCKKCLRSAADK 191 (426)
Q Consensus 179 ~FC~~CI~~~l~~ 191 (426)
.||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999864
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.05 E-value=18 Score=29.88 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=11.3
Q ss_pred cchhhhHHhhhhh
Q 044354 179 SFCKKCLRSAADK 191 (426)
Q Consensus 179 ~FC~~CI~~~l~~ 191 (426)
.||..|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999864
No 134
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=28.28 E-value=23 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=30.8
Q ss_pred ccccccccccCC---CCceec--cCCCcchhhhHHhh-hhhcCCCCcccccc
Q 044354 157 EELSCAICLEIC---FEPSTT--TCGHSFCKKCLRSA-ADKCGKKCPKCRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l---~~Pv~l--pCgH~FC~~CI~~~-l~~~~~~CP~CR~~ 202 (426)
....|.||...- .+.+++ .|.-.|...|+..- +..+.+.||.|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 457899998753 233332 68888889998643 23345789999653
No 135
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.87 E-value=26 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=32.6
Q ss_pred cccccccccccCCC-C--ceec--cCCCcchhhhHHhh-hhhcCCCCcccccccc
Q 044354 156 REELSCAICLEICF-E--PSTT--TCGHSFCKKCLRSA-ADKCGKKCPKCRQLIS 204 (426)
Q Consensus 156 ~~~l~CpIC~~~l~-~--Pv~l--pCgH~FC~~CI~~~-l~~~~~~CP~CR~~i~ 204 (426)
.++..|.||...-. + .+++ .|.-.|...|+..- +..+.+.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 45688999997642 1 2222 58778889998753 2334678999976544
No 136
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=27.22 E-value=13 Score=33.82 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=29.2
Q ss_pred cccccccccCCCCcee--ccCCCcchhhhHHhhhh---hcCCCCccccccc
Q 044354 158 ELSCAICLEICFEPST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQLI 203 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~i 203 (426)
+..|.||..-=. ++ -.|...|+..|+...+. .+.+.||.|....
T Consensus 7 ~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356999985321 22 25888889999865543 2357899998653
No 137
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=27.22 E-value=21 Score=32.26 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=27.6
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhh---hcCCCCcccccc
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAAD---KCGKKCPKCRQL 202 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~ 202 (426)
-.|.+|.+--.--..-.|...|+..|+..-+. .+.+.||.|...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46888885422111125777888888865443 345789999754
No 138
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.91 E-value=47 Score=25.35 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=43.3
Q ss_pred ccccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHHHHh
Q 044354 157 EELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAAAL 236 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~~~~ 236 (426)
..+.|++|...|.....|. .| +..........|+.|...+... ..|..-+.
T Consensus 16 ~~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~~------~~l~~H~~---------------- 66 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLL-IH------ERTHTDERPYTCDICHKAFRRQ------DHLRDHRY---------------- 66 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHH-HH------HHHHCCSCCCBCSSSCCBCSCH------HHHHHHGG----------------
T ss_pred cCeECCCCCCccCCHHHHH-HH------HHHcCCCCCcCCCCccchhCCH------HHHHHHHH----------------
Confidence 4588999988877543221 01 0000112246899998877631 11111110
Q ss_pred cccccccCccccccccccCch-hHHHHhhhc
Q 044354 237 NSREAEHQSPQRGFHNNVRTR-SMRSSATSS 266 (426)
Q Consensus 237 ~~~~~~~~~pc~gC~~~i~~~-~lR~H~~~c 266 (426)
.........|..|++.+... .|..|+...
T Consensus 67 -~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H 96 (106)
T 2ee8_A 67 -IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96 (106)
T ss_dssp -GSCCCCTTSCSSSCCCCSSHHHHHHHHHHT
T ss_pred -HhCCCCCeECCCcCCcccCHHHHHHHHHHh
Confidence 11223346788899987665 488887654
No 139
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.84 E-value=29 Score=22.06 Aligned_cols=23 Identities=0% Similarity=-0.214 Sum_probs=19.7
Q ss_pred ccccccccccCchh-HHHHhhhcc
Q 044354 245 SPQRGFHNNVRTRS-MRSSATSSG 267 (426)
Q Consensus 245 ~pc~gC~~~i~~~~-lR~H~~~c~ 267 (426)
..|..|...++..+ +..|+++|.
T Consensus 4 ~~CpvCk~q~Pd~kt~~~H~e~~~ 27 (28)
T 2jvx_A 4 FCCPKCQYQAPDMDTLQIHVMECI 27 (28)
T ss_dssp EECTTSSCEESSHHHHHHHHHHCC
T ss_pred ccCccccccCcChHHHHHHHHHHc
Confidence 46888999888877 999999996
No 140
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.08 E-value=13 Score=26.87 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=27.9
Q ss_pred ccccccccccCCCCcee--ccCCCcchhhhHHhhhh---hcCCCCccccc
Q 044354 157 EELSCAICLEICFEPST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQ 201 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~ 201 (426)
.+..|.||...- .++ -.|...|...|+..-+. ...+.||.|..
T Consensus 8 ~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346799998742 222 25888888888875432 23467998853
No 141
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.34 E-value=77 Score=23.45 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=41.5
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhh----hcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD----KCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAA 233 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~----~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~ 233 (426)
.+.|++|...|.....| ...+. .....|+.|...+... ..|..-+...
T Consensus 7 ~~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~~~------~~l~~H~~~h----------- 58 (95)
T 2yt9_A 7 GVACEICGKIFRDVYHL-----------NRHKLSHSGEKPYSCPVCGLRFKRK------DRMSYHVRSH----------- 58 (95)
T ss_dssp CEECSSSCCEESSSHHH-----------HHHHHHSCSSCSEECSSSCCEESCH------HHHHHHHHHH-----------
T ss_pred CeECCCCCCccCChHHH-----------HHHHHhcCCCCCCcCCCCCCccCCH------HHHHHHHHHh-----------
Confidence 47899998877765322 11111 1235799998877631 1111111110
Q ss_pred HHhcccccccCccccccccccCchh-HHHHhh
Q 044354 234 AALNSREAEHQSPQRGFHNNVRTRS-MRSSAT 264 (426)
Q Consensus 234 ~~~~~~~~~~~~pc~gC~~~i~~~~-lR~H~~ 264 (426)
.........|..|++.+.... |..|+.
T Consensus 59 ----~~~~~~~~~C~~C~~~f~~~~~L~~H~~ 86 (95)
T 2yt9_A 59 ----DGSVGKPYICQSCGKGFSRPDHLNGHIK 86 (95)
T ss_dssp ----CCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred ----cCCCCCceECCCccchhCCHHHHHHHHH
Confidence 111124567889999877654 888874
No 142
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.98 E-value=27 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=26.7
Q ss_pred cccccccccCCCCceec---cCCCcchhhhHHhhhhh--cCCCCccccc
Q 044354 158 ELSCAICLEICFEPSTT---TCGHSFCKKCLRSAADK--CGKKCPKCRQ 201 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~l---pCgH~FC~~CI~~~l~~--~~~~CP~CR~ 201 (426)
.+.| ||......-.++ .|..-|...|+..-... ..+.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 887765444343 47777777887543221 2468999964
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=32 Score=26.58 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=23.1
Q ss_pred ccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 159 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 159 l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
..|..|...+...++..-+..|...| +.|-.|...|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 46777777766555555555555444 356677666653
No 144
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=24.47 E-value=88 Score=25.68 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=23.2
Q ss_pred CccccccccccCchhHHHHhhhcccc
Q 044354 244 QSPQRGFHNNVRTRSMRSSATSSGDA 269 (426)
Q Consensus 244 ~~pc~gC~~~i~~~~lR~H~~~c~~~ 269 (426)
...|..|+..|.-..+-.|++.|...
T Consensus 70 ~~~C~nC~R~vaa~RFApHLeKCmg~ 95 (99)
T 3mhs_C 70 YIHCENCGRDVSANRLAAHLQRCLSR 95 (99)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHSCC
T ss_pred eEECCCCCCCchhhhhHHHHHHHHcc
Confidence 34799999999999999999999865
No 145
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.14 E-value=39 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=27.0
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccCC
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISNG 206 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~~ 206 (426)
...|..|...+...++..-+..|...| +.|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCC
Confidence 467999998777655555566665555 3677787777643
No 146
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.08 E-value=51 Score=25.64 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=14.7
Q ss_pred CccccccccccCch-hHHHHhh
Q 044354 244 QSPQRGFHNNVRTR-SMRSSAT 264 (426)
Q Consensus 244 ~~pc~gC~~~i~~~-~lR~H~~ 264 (426)
...|..|++.+... .|..|+.
T Consensus 94 ~~~C~~C~~~f~~~~~l~~H~~ 115 (124)
T 2dlq_A 94 PYKCSSCSQQFMQKKDLQSHMI 115 (124)
T ss_dssp SEECSSSCCEESSHHHHHHHHH
T ss_pred CccCCCccchhCCHHHHHHHHH
Confidence 45678888876665 4777765
No 147
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.92 E-value=18 Score=26.95 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=29.0
Q ss_pred ccccccccccCCCCcee-ccCCCcchhhhHHhhhh---hcCCCCcccccc
Q 044354 157 EELSCAICLEICFEPST-TTCGHSFCKKCLRSAAD---KCGKKCPKCRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~ 202 (426)
.+..|.||.+.- +-+. -.|...|...|+..-+. .+.+.||.|...
T Consensus 7 ~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 346899998742 2111 25877888888875332 245689999654
No 148
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.92 E-value=63 Score=24.01 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=42.6
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhh----hcCCCCccccccccCCCCcchhHHHHHHHHHHChhHHHHHHHH
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAAD----KCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAA 233 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~----~~~~~CP~CR~~i~~~~~l~~N~~L~~lI~~l~p~E~~~r~~~ 233 (426)
.+.|++|...|.....| ...+. .....|+.|...+... ..|..-+..
T Consensus 8 ~~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~~~------~~l~~H~~~------------ 58 (96)
T 2dmd_A 8 PHKCEVCGKCFSRKDKL-----------KTHMRCHTGVKPYKCKTCDYAAADS------SSLNKHLRI------------ 58 (96)
T ss_dssp CCCBTTTTBCCCCHHHH-----------HHHGGGCCCCCSEECSSSCCEESSH------HHHHHHHHH------------
T ss_pred CeECCCCCCccCCHHHH-----------HHHHHhcCCCCCEeCCCCCCccCCH------HHHHHHHHH------------
Confidence 37899999888765332 11111 1235799998877631 111111110
Q ss_pred HHhcccccccCccccccccccCch-hHHHHhhhc
Q 044354 234 AALNSREAEHQSPQRGFHNNVRTR-SMRSSATSS 266 (426)
Q Consensus 234 ~~~~~~~~~~~~pc~gC~~~i~~~-~lR~H~~~c 266 (426)
........|..|++.+... .|..|+...
T Consensus 59 -----h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 87 (96)
T 2dmd_A 59 -----HSDERPFKCQICPYASRNSSQLTVHLRSH 87 (96)
T ss_dssp -----SCCCCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred -----hCCCCCccCCCCCCccCCHHHHHHHHHHh
Confidence 1122346788899987665 488887643
No 149
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.65 E-value=24 Score=25.74 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=28.4
Q ss_pred cccccccccCCCCcee--ccCCCcchhhhHHhhhh---hcCCCCcccccc
Q 044354 158 ELSCAICLEICFEPST--TTCGHSFCKKCLRSAAD---KCGKKCPKCRQL 202 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~--lpCgH~FC~~CI~~~l~---~~~~~CP~CR~~ 202 (426)
+..|.||... ..++ -.|...|...|+..-+. .+.+.||.|...
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4679999874 2222 25888888999875432 235679999654
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.33 E-value=44 Score=29.74 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=20.5
Q ss_pred cCCCcchhhhHHhhhhh---------cCCCCccccc
Q 044354 175 TCGHSFCKKCLRSAADK---------CGKKCPKCRQ 201 (426)
Q Consensus 175 pCgH~FC~~CI~~~l~~---------~~~~CP~CR~ 201 (426)
.|-..||..||..++.. ..+.|-+|.-
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 58889999999887532 3468999864
No 151
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=37 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.644 Sum_probs=17.5
Q ss_pred cccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCccccccccC
Q 044354 160 SCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLISN 205 (426)
Q Consensus 160 ~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~~ 205 (426)
.|..|...+...++..-+..|+..|+ .|-.|..+|..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTTS---------BCSSSCCBCSS
T ss_pred cCccCCCEecceEEEECcccccccCC---------EeCCCCCcCCC
Confidence 46666665554433333333333332 45555555543
No 152
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.18 E-value=15 Score=29.38 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=9.5
Q ss_pred CCCCcccccccc
Q 044354 193 GKKCPKCRQLIS 204 (426)
Q Consensus 193 ~~~CP~CR~~i~ 204 (426)
..+||+|..++.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 358999988776
No 153
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.73 E-value=69 Score=26.17 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=27.9
Q ss_pred ccccccccccCC-------CCcee--ccCCCcchhhhHHh------hhhhcCCCCcccc
Q 044354 157 EELSCAICLEIC-------FEPST--TTCGHSFCKKCLRS------AADKCGKKCPKCR 200 (426)
Q Consensus 157 ~~l~CpIC~~~l-------~~Pv~--lpCgH~FC~~CI~~------~l~~~~~~CP~CR 200 (426)
....|.+|+..- ...++ ..|+..|...|+.. .+....+.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346788997642 11222 36998898999852 2334467788885
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.21 E-value=54 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=22.7
Q ss_pred cccccccccCCC--CceeccCCCcchhhhHHhhhhh
Q 044354 158 ELSCAICLEICF--EPSTTTCGHSFCKKCLRSAADK 191 (426)
Q Consensus 158 ~l~CpIC~~~l~--~Pv~lpCgH~FC~~CI~~~l~~ 191 (426)
-|.|.+|...|. ......=+..||..|....+..
T Consensus 36 CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 467888877773 2344556778888888776643
No 155
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.85 E-value=45 Score=25.03 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=25.9
Q ss_pred cccccccccCCCCceeccCCCcchhhhHHhhhhhcCCCCcccccccc
Q 044354 158 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGKKCPKCRQLIS 204 (426)
Q Consensus 158 ~l~CpIC~~~l~~Pv~lpCgH~FC~~CI~~~l~~~~~~CP~CR~~i~ 204 (426)
...|..|...+...++..-+..|...|+ +|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC---------eeCCCCCCCC
Confidence 4679999998776665556666655553 6777776654
No 156
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.53 E-value=38 Score=27.14 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=29.7
Q ss_pred ccccccccccCCCCcee-ccCCCcchhhhHHhhhhh---cCCCCcccccc
Q 044354 157 EELSCAICLEICFEPST-TTCGHSFCKKCLRSAADK---CGKKCPKCRQL 202 (426)
Q Consensus 157 ~~l~CpIC~~~l~~Pv~-lpCgH~FC~~CI~~~l~~---~~~~CP~CR~~ 202 (426)
....|.||..-- +-+. -.|.-.|...|+..-+.. +.+.||.|...
T Consensus 24 n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346899999742 2111 257778888888665432 35789999754
No 157
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.24 E-value=50 Score=27.40 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=7.3
Q ss_pred ccccccccCCCCc
Q 044354 159 LSCAICLEICFEP 171 (426)
Q Consensus 159 l~CpIC~~~l~~P 171 (426)
..|..|...+...
T Consensus 62 ~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 62 KRCAGCGGKIADR 74 (123)
T ss_dssp SBBSSSSSBCCSS
T ss_pred CcCcCCCCCcCCc
Confidence 4566666655544
No 158
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.10 E-value=33 Score=21.48 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=21.6
Q ss_pred ccCccccccccccCchhHHHHhhhcc
Q 044354 242 EHQSPQRGFHNNVRTRSMRSSATSSG 267 (426)
Q Consensus 242 ~~~~pc~gC~~~i~~~~lR~H~~~c~ 267 (426)
++...|..|.+.|+...+..|+..|.
T Consensus 4 ef~vqcpvcqq~mpaahin~hldrcl 29 (29)
T 3vhs_A 4 EFQVQCPVCQQMMPAAHINSHLDRCL 29 (29)
T ss_dssp -CEEECTTTCCEEEGGGHHHHHHHHC
T ss_pred ceeeeChHHHHhCcHHHHHHHHhccC
Confidence 45678999999999999999998874
No 159
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.03 E-value=81 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=20.2
Q ss_pred cccccccccCCCCc-eeccCCCcchhhhHHhhh
Q 044354 158 ELSCAICLEICFEP-STTTCGHSFCKKCLRSAA 189 (426)
Q Consensus 158 ~l~CpIC~~~l~~P-v~lpCgH~FC~~CI~~~l 189 (426)
-|.|..|...|..- ....=+..||..|....+
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 36777777766542 333456678888876654
Done!