BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044357
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 4 DWMRHLEVGIPALLEDGIRVLIYAGGA---IEWFGRK---DVV--------AAPTV---L 46
DWM+ + LL + +L+YAG W G K DV+ A+ V
Sbjct: 311 DWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWT 370
Query: 47 FKVDGEEAWQMKSHGPLTFFKEQLHDACHMVPVDQPKASLQMLQSWM 93
+ E A ++KS+ T+ + + + HMVP D P+ +L M+ W+
Sbjct: 371 ASITDEVAGEVKSYKHFTYLR--VFNGGHMVPFDVPENALSMVNEWI 415
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 4 DWMRHLEVGIPALLEDGIRVLIYAGGA---IEWFGRK---DVV--------AAPTV---L 46
DWM+ + LL + +L+YAG W G K DV+ A+ V
Sbjct: 311 DWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWT 370
Query: 47 FKVDGEEAWQMKSHGPLTFFKEQLHDACHMVPVDQPKASLQMLQSWM 93
+ E A ++KS+ T+ + + + HMVP D P+ +L M+ W+
Sbjct: 371 ASITDEVAGEVKSYKHFTYLR--VFNGGHMVPFDVPENALSMVNEWI 415
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 6 MRHLEVGIPALLEDGIRVLIYAGGAIEWFGRKDVVAAPTVLFKVDGEEAWQMKSHGPLTF 65
+ + + G +L D + + Y EW + +V+A P ++ +V+GE+ Q + P
Sbjct: 161 IENTKAGKGKILGDMVEAIEYP----EWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKM 216
Query: 66 FKEQLHDA 73
F E+L A
Sbjct: 217 FLEKLLSA 224
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 6 MRHLEVGIPALLEDGIRVLIYAGGAIEWFGRKDVVAAPTVLFKVDGEEAWQMKSHGPLTF 65
+ + + G +L D + + Y EW + +V+A P ++ +V+GE+ + + P
Sbjct: 161 IENTKAGKGKILGDMVEAIEYP----EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKM 216
Query: 66 FKEQLHDA 73
F E+L A
Sbjct: 217 FLEKLLSA 224
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 58 KSHGPLTFFKEQLHDACHMVP 78
KS+GPL F+ ++H A +P
Sbjct: 302 KSNGPLKFYNAEIHSAAFCLP 322
>pdb|2HFB|A Chain A, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
pdb|2HFB|B Chain B, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
Length = 409
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 37 KDVVAAPTVLFKVDGEEAWQMKSHGPLTF 65
KD+VA F + G +AW + + L F
Sbjct: 162 KDIVAKGQTPFGIAGADAWTLNGYNQLAF 190
>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
Length = 388
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 37 KDVVAAPTVLFKVDGEEAWQMKSHGPLTF 65
KD+VA F + G +AW + + L F
Sbjct: 144 KDIVAKGQTPFGIAGADAWTLNGYNQLAF 172
>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
Length = 401
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 37 KDVVAAPTVLFKVDGEEAWQMKSHGPLTF 65
KD+VA F + G +AW + + L F
Sbjct: 157 KDIVAKGQTPFGIAGADAWTLNGYNQLAF 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,079,656
Number of Sequences: 62578
Number of extensions: 111208
Number of successful extensions: 265
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)