BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044359
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 62/318 (19%)
Query: 77 ETEEVLCTIVKDLLSKHKINPKSIDILV-TNCSIFCPTPSISSMIINKFGFRSNIKSINL 135
E + + +++ L ++ ID+++ +C+ F PS+++ +IN+ GF S + I +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 136 SGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAIS-SNGYTGSTKSMLISNTVFRMGGA 194
+ +GC+AG +I+ D + + AL+++ E S T L+ N +F G A
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIA 201
Query: 195 AILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRS---LLPV 251
A ++ R G GV + R+ L+P
Sbjct: 202 AAVVRGR------------------------------------GGTGVRLERNGSYLIPK 225
Query: 252 AARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKK-AFEH---------FCI 301
+ ++ G H L L V + P K+ A EH + +
Sbjct: 226 TEDWIMYDVKATGFHFL--------LDKRVPATMEPLAPALKELAGEHGWDASDLDFYIV 277
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVW 361
HAGG I+D + L++ SR TL +GN +S+ L L +G V++G R
Sbjct: 278 HAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVEEGARGL 337
Query: 362 QIAFGSGF--KVNSAVWK 377
FG G +++ W+
Sbjct: 338 LAGFGPGITAEMSLGCWQ 355
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 63/285 (22%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
+FC T P + N G +++ + L GC AG + KDL + + + L
Sbjct: 715 VFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVL 774
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E ++ G + L+ +F G AA+++ + D I+ +
Sbjct: 775 VVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGS---DPDISIER---------- 821
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLW-SV 280
+FQ VS +++ +P +A A+ N+ ++G L + +LW +V
Sbjct: 822 -------PLFQL--------VSAAQTFIPNSAGAIAGNLREVG---LTF-----HLWPNV 858
Query: 281 VCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTL 330
S+ +AF+ I H GG AI+DAVE L L K+ EA+R L
Sbjct: 859 PTLISENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVL 918
Query: 331 YRFGNTSSSSYWYELCYLEAKGKVKKGDRV-------WQIAFGSG 368
+GN SS+ + L E + K KG+R W + FG G
Sbjct: 919 SEYGNMSSACVLFILD--EMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 31/278 (11%)
Query: 114 PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAISSN 173
P + ++ G R +++ L GC AG ++ L KDL + + + LV++ E ++
Sbjct: 162 PGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAE-LTLM 220
Query: 174 GYTGSTKS---MLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSV 230
+TG + L+ +F G AA+++ D +++ +T + D A +
Sbjct: 221 YFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTIIPESDHALNMR 280
Query: 231 FQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVP 290
F ++ DG +G + P ++ + + L
Sbjct: 281 FTERRLDGVLGRQV--------------------PGLIGDNVERCLLDMFGPLLGGDGGG 320
Query: 291 NFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEA 350
+ F + +H G I+D V+ L L ASR L +GN S ++ + L L
Sbjct: 321 GWNDLF--WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRR 378
Query: 351 KGKVKKGDRVW-----QIAFGSGFKVNSAVWKCVSNLD 383
+ K W +AFG G V++ + S+++
Sbjct: 379 QRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHVN 416
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 111/287 (38%), Gaps = 31/287 (10%)
Query: 103 LVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLA 162
LV + P + ++ G R +++ L GC AG ++ L KDL + + +
Sbjct: 121 LVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARV 180
Query: 163 LVLSMEAISSNGYTGSTKS---MLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTH 219
LV++ E ++ +TG + L+ +F G AA+++ D +++ +T
Sbjct: 181 LVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTI 239
Query: 220 MGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
+ D A + F ++ DG +G + P ++ + + L
Sbjct: 240 IPESDHALNMRFTERRLDGVLGRQV--------------------PGLIGDNVERCLLDM 279
Query: 280 VVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSS 339
+ F + +H G I+D V+ L L ASR L +GN S +
Sbjct: 280 FGPLLGGDGGGGWNDLF--WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGA 337
Query: 340 SYWYELCYLEAKGKVKKGDRVW-----QIAFGSGFKVNSAVWKCVSN 381
+ + L L + K W +AFG G V++ + S+
Sbjct: 338 TVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSH 384
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 49/290 (16%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
IFC T P ++ G ++K L G +AG + L KDL + +K S L
Sbjct: 133 IFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVL 192
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
++ E AI +G + L++ +F G AA+++ + H+A +
Sbjct: 193 IVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGS---GPHLAVER---------- 239
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLG-PHVLPYSEQLKYLWSV 280
+F+ VS +++LP +A+++++ + G L L ++
Sbjct: 240 -------PIFEI--------VSTDQTILPDTEKAMKLHLREGGLTFQLHRDVPLMVAKNI 284
Query: 281 VCKKSKTYVP----NFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNT 336
K P ++ F + +H GGRAI+D VE L L ++ ASR L +GN
Sbjct: 285 ENAAEKALSPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNL 342
Query: 337 SSSSYWYELCYLE----AKGKVKKGDRV---WQIAFGSGFKVNSAVWKCV 379
S+ + + + A+GK G+ + FG G V + V + V
Sbjct: 343 ISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSV 392
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 61/297 (20%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
IFC T P + +I G ++K + GC AG + L KDL + +K++ L
Sbjct: 129 IFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVL 188
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
++ E +++ G + + L+ +F G AAI++ +
Sbjct: 189 IVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVP----------------- 231
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYL-WSV 280
+ + +F+ VS + L+P + A+ + ++G L + YL SV
Sbjct: 232 ---EVENPLFEI--------VSTDQQLVPNSHGAIGGLLREVG---LTF-----YLNKSV 272
Query: 281 VCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTL 330
S+ KAF+ I H GGRAI+D VEE + L E +A+R L
Sbjct: 273 PDIISQNINDALSKAFDPLGISDYNSIFWIAHPGGRAILDQVEEKVNLKPEKMKATRDVL 332
Query: 331 YRFGNTSSSSYWYELCY-----LEAKGKVKKGDRVWQI--AFGSGFKVNSAVWKCVS 380
+GN SS+ ++ + LEA K W + FG G + + V + ++
Sbjct: 333 SNYGNMSSACVFFIMDLMRKKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSMA 389
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 120/305 (39%), Gaps = 55/305 (18%)
Query: 96 NPKSIDILVTNCSIFCPT-PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLL 154
PKS + CS P P + G R +K + + GC AG + L KDL
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 155 KVHKNSLALVLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKL 212
+ +K + LV+ E A++ G + + L+ +F G AA+++ +
Sbjct: 183 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPV--------- 233
Query: 213 KHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSE 272
+ +F+ V ++++ P + A+ ++ + G +
Sbjct: 234 -----------PEIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG-----LTF 269
Query: 273 QLKYLWSVVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKED 322
LK + K+ T +AFE I H GG AI+D VE+ L L E
Sbjct: 270 HLKGAVPDIVSKNITKA--LVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 327
Query: 323 GEASRMTLYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAV 375
A+R L +GN SS+ + L + K G G+ + W + FG G + + V
Sbjct: 328 MNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVV 387
Query: 376 WKCVS 380
+ V+
Sbjct: 388 LRSVA 392
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 123/302 (40%), Gaps = 49/302 (16%)
Query: 96 NPKS-IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLL 154
PKS I LV + P + G R +K + L G AG + + KDL
Sbjct: 132 QPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLA 191
Query: 155 KVHKNSLALVLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKL 212
+ +K + LV E A++ + + L+ + +F G AA+++ + +
Sbjct: 192 ENNKGARVLVACSEVTAVTFRAPSETHLDGLVGSALFGDGAAALIVGSDP-----VPQEE 246
Query: 213 KHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRS-----LLPVAARALRINISQLGPHV 267
K L H A +V D DG + + + LL + NI ++
Sbjct: 247 KPLFEIHW-----AGEAVLP--DSDGAINGHLREAGLIFHLLKDVPGLISKNIDKV---- 295
Query: 268 LPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASR 327
+E L+Y+ + P++ F + +H GG AI+D +E L LS + +ASR
Sbjct: 296 --LAEPLEYV----------HFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASR 341
Query: 328 MTLYRFGNTSSSSYWY---------ELCYLEAKGKVKKGDRVWQIAFGSGFKVNSAVWKC 378
L +GN SS+S + E +L G+ + V I FG G V + + +
Sbjct: 342 DVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFV--IGFGPGLTVETLLLRS 399
Query: 379 VS 380
++
Sbjct: 400 IN 401
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 59/296 (19%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + GC AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ +
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVP----------------- 230
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVV 281
+ +F+ V ++++ P + A+ ++ + G L + LK + +V
Sbjct: 231 ---EIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPGIV 275
Query: 282 CKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTLY 331
SK +AFE I H GG AI+D VE+ L L E A+R L
Sbjct: 276 ---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 332 RFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
+GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 333 EYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ +++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDVHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ +++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDLHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 25/281 (8%)
Query: 100 IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKN 159
I +LV S P + I+ + G +I + ++ MGC+A + ++ + ++ H
Sbjct: 135 IGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPA 194
Query: 160 SLALVLSMEAISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTH 219
ALV+ +E S N + ++ +++F G AA+++ Q + + K+ +VR+
Sbjct: 195 MKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKV--VVRS- 251
Query: 220 MGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
++S + + +GV+ + ++ S + P V + LW
Sbjct: 252 ------SFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV------TEMLWD 299
Query: 280 VVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSS 339
+ S + + IH GG II+ +L +S E S L RFGN S
Sbjct: 300 NGLQISD---------IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSV 350
Query: 340 SYWYELCYLEAKGKVKKGDRVW-QIAFGSGFKVNSAVWKCV 379
S + L + + + K AFG G V ++ +
Sbjct: 351 SLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDII 391
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDFHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 25/281 (8%)
Query: 100 IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKN 159
I +LV S P + I+ + G +I + ++ MGC+A + ++ + ++ H
Sbjct: 135 IGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPA 194
Query: 160 SLALVLSMEAISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTH 219
ALV+ +E S N + ++ +++F G AA+++ Q + + K+ +VR+
Sbjct: 195 MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKV--VVRS- 251
Query: 220 MGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
++S + + +GV+ + ++ S + P V + LW
Sbjct: 252 ------SFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV------TEMLWD 299
Query: 280 VVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSS 339
+ S + + IH GG II+ +L +S E S L RFGN S
Sbjct: 300 NGLQISD---------IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSV 350
Query: 340 SYWYELCYLEAKGKVKKGDRVW-QIAFGSGFKVNSAVWKCV 379
S + L + + + K AFG G V ++ +
Sbjct: 351 SLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDII 391
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDAHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 147/365 (40%), Gaps = 62/365 (16%)
Query: 35 FDKESLDFQEKVL-EKSGIGDESCIPLNL-HEMQPDVSLKRSREETEEVLCTIVKDLLSK 92
+K L E++L E I LN+ H+MQ +K E +E +K+
Sbjct: 61 IEKRYLHVTEEILKENPNIAAYEATSLNVRHKMQ----VKGVAELGKEAALKAIKEWG-- 114
Query: 93 HKINPKS-IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVK 151
PKS I L+ C P + ++K +GC AG + L K
Sbjct: 115 ---QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAK 171
Query: 152 DLLKVHKNSLALVLSMEAISSNGYTGSTKSML---ISNTVFRMGGAAILLSNRQQDKHIA 208
D+ + +K + L++ E +++ + G +++ L I +F G AA+++
Sbjct: 172 DIAENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADP------ 224
Query: 209 KYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVL 268
D +F+ VS +++++P + A+ ++ + G
Sbjct: 225 --------------DLTVERPIFEL--------VSTAQTIVPESHGAIEGHLLESGLSFH 262
Query: 269 PYSEQLKYLWSVVCKKSKT-----YVP-NFKKAFEHFCI-HAGGRAIIDAVEENLKLSKE 321
Y K + +++ KT + P N F I H GG AI+D V + L KE
Sbjct: 263 LY----KTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKE 318
Query: 322 DGEASRMTLYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSA 374
+ +R L +GN SS++ ++ + + K G+ G+ + W + FG G V +
Sbjct: 319 KLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETV 378
Query: 375 VWKCV 379
V + V
Sbjct: 379 VLRSV 383
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 226 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPG 273
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 274 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 330
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 116/296 (39%), Gaps = 59/296 (19%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ +
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVP----------------- 230
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVV 281
+ +F+ V ++++ P + A+ ++ + G L + LK + +V
Sbjct: 231 ---EIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPGIV 275
Query: 282 CKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTLY 331
SK +AFE I H GG AI+D VE+ L L E A+R L
Sbjct: 276 ---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 332 RFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
+GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 333 EYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/359 (18%), Positives = 151/359 (42%), Gaps = 52/359 (14%)
Query: 23 SHFVEHFTTSNVFDKESLDF-QEKVLEKSGIGDESCIPLNLHEMQPDVSLKRSREETEEV 81
H E T++V + D+ EK+L K+GI + + RE ++
Sbjct: 38 GHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERR--------------IAAPRETAADL 83
Query: 82 LCTIVKDLLSKHKINPKSID--ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMG 139
+ L ++ + +D IL T + P+ + M+ ++ G ++ +++++ +G
Sbjct: 84 AYEAARKLFAQGAVGADQVDFVILCTQAPDYV-LPTSACMLQHRLGIPTHAGALDVN-LG 141
Query: 140 CSAGILSISLVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNTVFRMGGAAI-LL 198
CS + +SL K L++ L+L+ + S + KS+ T+F G +A ++
Sbjct: 142 CSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLHP-LDKSV---RTLFGDGASATAVI 197
Query: 199 SNRQQDKHIAKYKLKH--------LVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLP 250
+ + + I + +V+ + + ++ S + +D GNV L
Sbjct: 198 AEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNV--RTDEHLYM 255
Query: 251 VAARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIID 310
A + +++++ P +++L L ++ + F +H R ++D
Sbjct: 256 NGAEVMAFSLAEV-PRA---ADRLLALAG-----------EPRENIDCFVLHQANRFMLD 300
Query: 311 AVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGF 369
A+ + +K+ + + + GNT SS+ L + A G + +G R+ + FG G+
Sbjct: 301 ALRKKMKIPEHK---FPVLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGVGY 356
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 224
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 225 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPG 272
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I H GG AI+D VE+ L L E A+R
Sbjct: 273 IV---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREV 329
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 330 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 387
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLE----AKGKVKKG 357
H GGRAI+D VE LKL E A+R L+ +GN S+S Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 358 DRV-WQI--AFGSGFKVNS 373
+ + W + FG G V +
Sbjct: 379 EGLEWGVLLGFGPGITVET 397
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLE----AKGKVKKG 357
H GGRAI+D VE LKL E A+R L+ +GN S+S Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 358 DRV-WQI--AFGSGFKVNS 373
+ + W + FG G V +
Sbjct: 379 EGLEWGVLLGFGPGITVET 397
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 102/231 (44%), Gaps = 23/231 (9%)
Query: 114 PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAISSN 173
P ++ +I+ G +++ ++L+ MGC AG+ S+ L K + LV+ E S +
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 174 GYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQ 233
++++++F G AA ++ + + Y++ + + + + + V+
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEV--MCSINRSFPNTENAMVWDL 248
Query: 234 QDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFK 293
+ + N+G+ S +P+ +G + + + L K+K
Sbjct: 249 EKEGWNLGLDAS---IPIV----------IGSGIEAFVDTL-------LDKAKLQTSTAI 288
Query: 294 KAFE-HFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWY 343
A + F IH GG++I+ +E +L + + + + + +GN SS+S +
Sbjct: 289 SAKDCEFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIF 339
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 62/365 (16%)
Query: 35 FDKESLDFQEKVL-EKSGIGDESCIPLNL-HEMQPDVSLKRSREETEEVLCTIVKDLLSK 92
+K L E++L E I LN+ H+MQ +K E +E +K+
Sbjct: 61 IEKRYLHVTEEILKENPNIAAYEATSLNVRHKMQ----VKGVAELGKEAALKAIKEWG-- 114
Query: 93 HKINPKS-IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVK 151
PKS I L+ C P + ++K +GC AG + L K
Sbjct: 115 ---QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAK 171
Query: 152 DLLKVHKNSLALVLSMEAISSNGYTGSTKSML---ISNTVFRMGGAAILLSNRQQDKHIA 208
D+ + +K + L++ E +++ + G +++ L I + G AA+++
Sbjct: 172 DIAENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADP------ 224
Query: 209 KYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVL 268
D +F+ VS +++++P + A+ ++ + G
Sbjct: 225 --------------DLTVERPIFEL--------VSTAQTIVPESHGAIEGHLLESGLSFH 262
Query: 269 PYSEQLKYLWSVVCKKSKT-----YVP-NFKKAFEHFCI-HAGGRAIIDAVEENLKLSKE 321
Y K + +++ KT + P N F I H GG AI+D V + L KE
Sbjct: 263 LY----KTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKE 318
Query: 322 DGEASRMTLYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSA 374
+ +R L +GN SS++ ++ + + K G+ G+ + W + FG G V +
Sbjct: 319 KLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETV 378
Query: 375 VWKCV 379
V + V
Sbjct: 379 VLRSV 383
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 59/296 (19%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 126 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 185
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ +
Sbjct: 186 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVP----------------- 228
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVV 281
+ +F+ V ++++ P + A+ ++ + G L + LK + +V
Sbjct: 229 ---EIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPGIV 273
Query: 282 CKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTLY 331
SK +AFE I H GG AI+D VE+ L L E A+R L
Sbjct: 274 ---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLS 330
Query: 332 RFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
+G SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 331 EYGAMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 386
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 63/298 (21%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E A++ G + + L+ +F G AA+++ G
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 224
Query: 222 YDD--QAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWS 279
D + +F+ V ++++ P + A+ ++ + G L + LK +
Sbjct: 225 SDPVPEIEKPIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPG 272
Query: 280 VVCKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMT 329
+V SK +AFE I GG AI+D VE+ L L E A+R
Sbjct: 273 IV---SKNITKALVEAFEPLGISDYNSIFWIAQPGGPAILDQVEQKLALKPEKMNATREV 329
Query: 330 LYRFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
L +GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 330 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 387
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 59/296 (19%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
I C T P + G R +K + G AG + L KDL + +K + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 164 VLSMEAISSNGYTGSTKSMLIS--NTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMG 221
V+ E +++ + G + + L S GAA L+ I K
Sbjct: 188 VVCSE-VTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEK------------ 234
Query: 222 YDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLWSVV 281
+F+ V ++++ P + A+ ++ + G L + LK + +V
Sbjct: 235 -------PIFEM--------VWTAQTIAPDSEGAIDGHLREAG---LTF-HLLKDVPGIV 275
Query: 282 CKKSKTYVPNFKKAFEHFCI----------HAGGRAIIDAVEENLKLSKEDGEASRMTLY 331
SK +AFE I H GG AI+D VE+ L L E A+R L
Sbjct: 276 ---SKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 332 RFGNTSSSSYWYELCYLEAK----GKVKKGDRV-WQI--AFGSGFKVNSAVWKCVS 380
+GN SS+ + L + K G G+ + W + FG G + + V + V+
Sbjct: 333 EYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 125/309 (40%), Gaps = 45/309 (14%)
Query: 90 LSKHKINPKSIDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISL 149
+++ ++ P I +V+ P + + G ++ + L G+GCS G+ ++
Sbjct: 122 MAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRT 181
Query: 150 VKDLLKVH----KNSLALVLSMEAISSNGYTGSTKSM------LISNTVFRMGGAAILLS 199
+L H K + LVL++E +S+ +S+ I +F +A++LS
Sbjct: 182 AANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALFSDCASAVILS 240
Query: 200 NRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRIN 259
N I + K + +G++++ D + ++G + ++
Sbjct: 241 N-----GIGEAPGKPAIYDLLGWENRVI------PDSEHDLGFDVD-------PMGWKVV 282
Query: 260 ISQLGPHVLPYSEQLKY---LWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENL 316
+S P + S Q Y L S+ + +Y K A + +H GG I+ E +
Sbjct: 283 LSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQ---KPADFDWAMHPGGATILSGAESAM 339
Query: 317 KLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAK--------GKVKKGDRVWQIAFGSG 368
L+ E AS GN+SS++ + L L K GKVK + V AFG G
Sbjct: 340 GLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK--EYVVGCAFGPG 397
Query: 369 FKVNSAVWK 377
V + K
Sbjct: 398 INVEMCMLK 406
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 47/289 (16%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
IFC T P + G ++K + + GC AG + + KDL + ++ + L
Sbjct: 135 IFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVL 194
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNR---QQDKHIAKYKLKHLVRT 218
V+ E A++ G + + L+ +F G +A+++ Q +K A +++ +T
Sbjct: 195 VICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEK--ACFEIVWTAQT 252
Query: 219 HMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLW 278
+ + A ++ V ++ L + NI
Sbjct: 253 VVPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIEN---------------- 288
Query: 279 SVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSS 338
+V S+ + ++ K F + +H GGRAI+D VE L L +R + +GN SS
Sbjct: 289 CMVEAFSQFKISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSS 346
Query: 339 SSYWYELCYLEAKGKVKKG--------DRVWQIAFGSGFKVNSAVWKCV 379
+ + L K ++ G + FG G + + V K V
Sbjct: 347 ACVHFILDQTR-KASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 394
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 47/289 (16%)
Query: 109 IFCPT-----PSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLAL 163
IFC T P + G ++K + + GC AG + + KDL + ++ + L
Sbjct: 151 IFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVL 210
Query: 164 VLSME--AISSNGYTGSTKSMLISNTVFRMGGAAILLSNR---QQDKHIAKYKLKHLVRT 218
V+ E A++ G + + L+ +F G +A+++ Q +K A +++ +T
Sbjct: 211 VICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEK--ACFEIVWTAQT 268
Query: 219 HMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHVLPYSEQLKYLW 278
+ + A ++ V ++ L + NI
Sbjct: 269 VVPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIEN---------------- 304
Query: 279 SVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSS 338
+V S+ + ++ K F + +H GGRAI+D VE L L +R + +GN SS
Sbjct: 305 CMVEAFSQFKISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSS 362
Query: 339 SSYWYELCYLEAKGKVKKG--------DRVWQIAFGSGFKVNSAVWKCV 379
+ + L K ++ G + FG G + + V K V
Sbjct: 363 ACVHFILDQTR-KASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 410
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 47/310 (15%)
Query: 90 LSKHKINPKSIDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISL 149
+++ ++ P I +V+ P + + G ++ + L G+G S G+ ++
Sbjct: 93 MAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGXSGGLAALRT 152
Query: 150 VKDLLKVH----KNSLALVLSMEAISSNGYTGSTKSM------LISNTVFRMGGAAILLS 199
+L H K + LVL++E +S+ +S+ I +F +A++LS
Sbjct: 153 AANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALFSDCASAVILS 211
Query: 200 NRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLL----PVAARA 255
N I + K + +G++++ + D G+V + +L PV A+A
Sbjct: 212 N-----GIGEAPGKPAIYDLLGWENRVIPD--SEHDLGGDVDPMGWKVVLSPRVPVLAKA 264
Query: 256 LRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEEN 315
L P Y++ L L + + K A + +H GG I+ E
Sbjct: 265 ------SLQPT---YADLLSSLQDQLPSSYQ------KPADFDWAMHPGGATILSGAESA 309
Query: 316 LKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAK--------GKVKKGDRVWQIAFGS 367
+ L+ E AS GN+SS++ + L L K GKVK + V AFG
Sbjct: 310 MGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK--EYVVGCAFGP 367
Query: 368 GFKVNSAVWK 377
G V + K
Sbjct: 368 GINVEMCMLK 377
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 299 FCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCY-----LEAKGK 353
+ +H GG AI+D VE L+L K +ASR L +GN SS+S + L LE+
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 354 VKKGDRVWQ--IAFGSGFKVNSAVWKCVSNLDPKER 387
W I FG G V + + + + L ER
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRALP-LQQAER 412
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 45/309 (14%)
Query: 90 LSKHKINPKSIDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISL 149
+++ ++ P I +V+ P + + G ++ + L G+G S G+ ++
Sbjct: 93 MAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGXSGGLAALRT 152
Query: 150 VKDLLKVH----KNSLALVLSMEAISSNGYTGSTKSM------LISNTVFRMGGAAILLS 199
+L H K + LVL++E +S+ +S+ I +F +A++LS
Sbjct: 153 AANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALFSDCASAVILS 211
Query: 200 NRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRIN 259
N I + K + +G++++ D + ++G + ++
Sbjct: 212 N-----GIGEAPGKPAIYDLLGWENRVIP------DSEHDLGFDVD-------PMGWKVV 253
Query: 260 ISQLGPHVLPYSEQLKY---LWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENL 316
+S P + S Q Y L S+ + +Y K A + +H GG I+ E +
Sbjct: 254 LSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQ---KPADFDWAMHPGGATILSGAESAM 310
Query: 317 KLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAK--------GKVKKGDRVWQIAFGSG 368
L+ E AS GN+SS++ + L L K GKVK + V AFG G
Sbjct: 311 GLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK--EYVVGCAFGPG 368
Query: 369 FKVNSAVWK 377
V + K
Sbjct: 369 INVEMCMLK 377
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 299 FCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGD 358
F H IIDA E L L E + + R+GNTS++S L G++++GD
Sbjct: 243 FVPHQANLRIIDAARERLGLPWER---VAVNVDRYGNTSTASIPLALKEAVDAGRIREGD 299
Query: 359 RVWQIAFGSGFKVNSAV 375
V ++FG+G +AV
Sbjct: 300 HVLLVSFGAGLTWAAAV 316
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 299 FCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAK----GKV 354
+ H G AIIDA+E L+LS + +R +GN S++ ++ + L + G+
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 355 KKGDRV-WQI--AFGSGFKVNSAVWKCV 379
GD + W + FG G + + V + +
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 299 FCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAK----GKV 354
+ H G AIIDA+E L+LS + +R +GN S++ ++ + L + G+
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 355 KKGDRV-WQI--AFGSGFKVNSAVWKCV 379
GD + W + FG G + + V + +
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 126/301 (41%), Gaps = 50/301 (16%)
Query: 74 SREETEEVLCT-IVKDLLSKHKINPKSIDILVTNCSIFCPT---PSISSMIINKFGFRSN 129
++EET + T K+ L + ++P+ +D+++ + P PS + ++ + +
Sbjct: 45 AKEETITYMATQAAKEALREANLSPEELDLII--LATLTPQKRFPSTACLVQAQLKAK-G 101
Query: 130 IKSINLSGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAISSN-GYTGSTKSMLISNTV 188
+ + ++S CS I ++ + +K K LV+ E +S + + +L +
Sbjct: 102 VYAFDISA-ACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEAVDWEDRSTCVLFGD-- 158
Query: 189 FRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSL 248
GA ++ R +DK ++ T M Y + + + D G + + R L
Sbjct: 159 ----GAGAVVVTRSEDKS-------DILATRM-YAEGSLEELLHA-DNCGYIRMK-GREL 204
Query: 249 LPVAARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAI 308
VA R++ ++ VL + V ++ +P H I
Sbjct: 205 FKVAVRSME----EVCREVLEKA-------GVKPEEVSLVIP-----------HQANVRI 242
Query: 309 IDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSG 368
I+A+ E L + KE + + ++GNTS++S L +GKVK+GD + A G G
Sbjct: 243 INALAEKLNIPKEK---VFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGG 299
Query: 369 F 369
Sbjct: 300 L 300
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 35/291 (12%)
Query: 90 LSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSIS 148
LS ++ ID ++VT + F TP + M+ G + I +LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 149 LVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNT--VFRMGGAAILLSNRQQDKH 206
D+++ + LV+ E +S T M + +F G AA++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSP------TIDMYDAGNCFIFADGAAAVV--------- 196
Query: 207 IAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPH 266
+ + + + T G D + ++ Q D I+ + P R + GP
Sbjct: 197 VGETPFQGIGPTVAGSDGEQADAIRQDIDW-------ITFAQNPSGPRPF---VRLEGPA 246
Query: 267 VLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEAS 326
V ++ + V +++ + F H I + + +NL+L + A+
Sbjct: 247 VFRWA---AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAN 303
Query: 327 RMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSAVWK 377
+ GNTS++S + L G K GD I +G+G + V +
Sbjct: 304 --DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 35/291 (12%)
Query: 90 LSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSIS 148
LS ++ ID ++VT + F TP + M+ G + I +LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 149 LVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNT--VFRMGGAAILLSNRQQDKH 206
D+++ + LV+ E +S T M + +F G AA++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSP------TIDMYDAGNCFIFADGAAAVV--------- 196
Query: 207 IAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPH 266
+ + + + T G D + ++ Q D I+ + P R + GP
Sbjct: 197 VGETPFQGIGPTVAGSDGEQADAIRQDIDW-------ITFAQNPSGPRPF---VRLEGPA 246
Query: 267 VLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEAS 326
V ++ + V +++ + F H I + + +NL+L + A+
Sbjct: 247 VFRWA---AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAN 303
Query: 327 RMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSAVWK 377
+ GNTS++S + L G K GD I +G+G + V +
Sbjct: 304 --DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 138/365 (37%), Gaps = 42/365 (11%)
Query: 23 SHFVEHFTTSNVFDKESLDFQEKVLEKSGIGDESCIPLNLHE----MQPDVSLKR--SRE 76
SH E TTS L E+ DE C ++ + + + +R + +
Sbjct: 19 SHMTEIATTSGARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADD 78
Query: 77 ETEEVLCT-IVKDLLSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSIN 134
E+ + T + LS ++ ID ++VT + F TP + M+ G + I +
Sbjct: 79 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFD 137
Query: 135 LSGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNT--VFRMG 192
LS GC+ ++ D+++ + LV+ E +S T M +F G
Sbjct: 138 LS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSP------TIDMYDRGNCFIFADG 190
Query: 193 GAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVA 252
AA++ + + + + T G D + ++ Q D I+ + P
Sbjct: 191 AAAVV---------VGETPFQGIGPTVAGSDGEQADAIRQDIDW-------ITFAQNPSG 234
Query: 253 ARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAV 312
R + GP V ++ + V +++ + F H I + +
Sbjct: 235 PRPF---VRLEGPAVFRWA---AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELL 288
Query: 313 EENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVN 372
+NL+L + A+ + GNTS++S + L G K GD I +G+G
Sbjct: 289 VKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYA 346
Query: 373 SAVWK 377
+ V +
Sbjct: 347 AQVVR 351
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 112/291 (38%), Gaps = 35/291 (12%)
Query: 90 LSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSIS 148
LS ++ ID ++VT + F TP + M+ G + I +LS GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 130
Query: 149 LVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNT--VFRMGGAAILLSNRQQDKH 206
D+++ + LV+ E +S T M +F G AA++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSP------TIDMYDRGNCFIFADGAAAVV--------- 175
Query: 207 IAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPH 266
+ + + + T G D + ++ Q D I+ + P R + GP
Sbjct: 176 VGETPFQGIGPTVAGSDGEQADAIRQDIDW-------ITFAQNPSGPRPF---VRLEGPA 225
Query: 267 VLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEAS 326
V ++ + V +++ + F H I + + +NL+L + A+
Sbjct: 226 VFRWA---AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAN 282
Query: 327 RMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSAVWK 377
+ GNTS++S + L G K GD I +G+G + V +
Sbjct: 283 --DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVW 361
H II A + L +S ++ +TL R GNTS++S L G++K G V
Sbjct: 267 HQANLRIISATAKKLGMSMDN---VVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 323
Query: 362 QIAFGSGFKVNSAVWK 377
AFG GF SA+ +
Sbjct: 324 LEAFGGGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVW 361
H II A + L +S ++ +TL R GNTS++S L G++K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDN---VVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 362 QIAFGSGFKVNSAVWK 377
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVW 361
H II A + L +S ++ +TL R GNTS++S L G++K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDN---VVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 362 QIAFGSGFKVNSAVWK 377
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 291 NFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEA 350
N + + H II A + L S ++ +TL R GNTS++S L
Sbjct: 233 NDRSQLDWLVPHQANLRIISATAKKLGXSXDN---VVVTLDRHGNTSAASVPCALDEAVR 289
Query: 351 KGKVKKGDRVWQIAFGSGFKVNSAVWK 377
G++K G V AFG GF SA+ +
Sbjct: 290 DGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 302 HAGGRAIIDAVEENLKLSKEDGEASRMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVW 361
H II A + L S ++ +TL R GNTS++S L G++K G V
Sbjct: 244 HQANLRIISATAKKLGXSXDN---VVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 362 QIAFGSGFKVNSAVWK 377
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 325 ASRMTLY-RFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSA--VW 376
A MT++ GN +S L L+ G++KKGDR+ + GSG + A VW
Sbjct: 291 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 325 ASRMTLY-RFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSA--VW 376
A MT++ GN +S L L+ G++KKGDR+ + GSG + A VW
Sbjct: 290 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 110/291 (37%), Gaps = 35/291 (12%)
Query: 90 LSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSIS 148
LS ++ ID ++VT + F TP + M+ G + I +LS G ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLSAGAAGFG-YALG 130
Query: 149 LVKDLLKVHKNSLALVLSMEAISSNGYTGSTKSMLISNT--VFRMGGAAILLSNRQQDKH 206
D+++ + LV+ E +S T M +F G AA++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSP------TIDMYDRGNCFIFADGAAAVV--------- 175
Query: 207 IAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPH 266
+ + + + T G D + ++ Q D I+ + P R + GP
Sbjct: 176 VGETPFQGIGPTVAGSDGEQADAIRQDIDW-------ITFAQNPSGPRPF---VRLEGPA 225
Query: 267 VLPYSEQLKYLWSVVCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEAS 326
V ++ + V +++ + F H I + + +NL+L + A+
Sbjct: 226 VFRWA---AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAN 282
Query: 327 RMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSAVWK 377
+ GNTS++S + L G K GD I +G+G + V +
Sbjct: 283 --DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 325 ASRMTLY-RFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGFKVNSA--VW 376
A MT++ GN +S L L+ G++KKGDR+ + GSG + A VW
Sbjct: 284 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 184 ISNTVFRMGGAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVS 243
+ N + ++G +LL N+ + KH +K+K + D A VF +G V+
Sbjct: 220 VKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAV-------DTTAAGDVF-----NGAFAVA 267
Query: 244 ISRSLLPVAA-----RALRINISQLGPH-VLPYSEQLK 275
+S P A A I++++LG +P E+++
Sbjct: 268 LSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVE 305
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 112/283 (39%), Gaps = 46/283 (16%)
Query: 90 LSKHKINPKSID-ILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSIS 148
++ I P+ ID I+V + P P++++M+ + G L+ CS + S+
Sbjct: 63 IADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAA--CSGFMYSMI 120
Query: 149 LVKDLLKVHKNSLALVLSMEAISS-NGYTGSTKSMLISNTVFRMGGAAILLSNRQQDKHI 207
K ++ LV+ + +S T + ++L F G A+++ + + I
Sbjct: 121 TAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAVL-----FGDGAGAVIIGEVSEGRGI 175
Query: 208 AKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLLPVAARALRINISQLGPHV 267
Y+ MG D ++ +D L++N G V
Sbjct: 176 ISYE--------MGSDGTGGKHLYLDKD-----------------TGKLKMN----GREV 206
Query: 268 LPYSEQLKYLWSV-VCKKSKTYVPNFKKAFEHFCIHAGGRAIIDAVEENLKLSKEDGEAS 326
++ ++ S V +K+ + + F H I+++ E L +SK+
Sbjct: 207 FKFAVRIMGDASTRVVEKANLTSDDI----DLFIPHQANIRIMESARERLGISKD---KM 259
Query: 327 RMTLYRFGNTSSSSYWYELCYLEAKGKVKKGDRVWQIAFGSGF 369
+++ ++GNTS++S + GK+K D + + FG G
Sbjct: 260 SVSVNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGL 302
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 127 RSNIKSINLSGMGCSAGILSISLVKDLLKVHKNSLALVLSMEAISSNGYTG 177
R K I + C+A I+S+ +K L+++ S ++ +++A+S GY G
Sbjct: 138 RKGWKGILVKNPNCTAAIMSMP-IKPLIEIATKSKIIITTLQAVSGAGYNG 187
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 190 RMGGAAILLSNRQQDKHIAKYKLKHLVRTHMGYDDQAYSSVFQQQDKDGNVGVSISRSLL 249
R+G A ++ S D+ +A R H +FQ +DG S L
Sbjct: 30 RLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89
Query: 250 PVAARALRINISQLGPHVLPYSEQLKYLWSVVCKKSKTYVPNFKKAF-EHF------CIH 302
V VL Y E+ W+ C+ + P F+ AF E F C
Sbjct: 90 DVEG--------SFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPD 141
Query: 303 AGGRAIIDAVEENL 316
AG R ++ NL
Sbjct: 142 AGRRFLLAMKASNL 155
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 100 IDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVHKN 159
+D L+T+ S P + + N+ R + + + C AG S++L DL+ +
Sbjct: 159 VDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLVAADPD 218
Query: 160 SLALVLSMEAISSNGYTGSTKSM--LISNTVFRMGGAAILLSNRQQDKHIAK 209
+ LV+ EA+S+ Y + ++ LI +F A +++ R + + + +
Sbjct: 219 RVVLVVISEALSTT-YQPADDTLESLIVRLLFADTAVAAVVTGRPRPESVLR 269
>pdb|1HJS|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJS|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJS|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJS|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJU|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJU|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJU|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum.
pdb|1HJU|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
For The Basis For Temperature And Ph Optimum
Length = 332
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 98 KSIDILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGILSISLVKDLLKVH 157
K I ++ TN I CP P ++ F S++K+I S G + I + V +++
Sbjct: 239 KEIAVVETNWPISCPNP--------RYSFPSDVKNIPFSPEGQTTFITN---VANIVSSV 287
Query: 158 KNSLALVLSMEAISSNGYTGSTKSMLISNTVFRMGGAAI 196
+ L A N GS+ NT+F G A+
Sbjct: 288 SRGVGLFYWEPAWIHNANLGSS---CADNTMFSQSGQAL 323
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 101 DILVTNCSIFCPTPSISSMIINKFGFRSNIKSINLSGMGCSAGIL----SISLVKDLLKV 156
+I + + + + + ++ + FGFR NI N G G + S ++KD K
Sbjct: 609 NITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAEDSTIVIKDKAKA 668
Query: 157 HKNSLALVLSMEAISSNGYTGSTKSMLISNTVFRMGGAAILLSNRQQD 204
++ +L+ +A NG +T+S + S + + G + N +D
Sbjct: 669 LFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKD 716
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,743,780
Number of Sequences: 62578
Number of extensions: 463962
Number of successful extensions: 1287
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 91
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)