AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>044362
KKKKAKYDGRTHSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAA
RYPKRNTLQPVDTSEGLTMMPVSSSAKKKGKRSVKNEGDQEQKQRSKQPVKDEKQA
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G18490 AT2G18490 AT2G18490	protein from Arabidopsis thaliana	4.1e-17
BLAST match view associations BLAST with AT5G22990 AT5G22990 AT5G22990	protein from Arabidopsis thaliana	1.9e-16
BLAST match view associations BLAST with AT2G15740 AT2G15740 AT2G15740	protein from Arabidopsis thaliana	1.2e-14
BLAST match view associations BLAST with AT5G42640 AT5G42640 AT5G42640	protein from Arabidopsis thaliana	3.5e-14
BLAST match view associations BLAST with znf292b znf292b znf292b zinc finger protein 292b	gene_product from Danio rerio	0.00085
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044362
        (116 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2046318 - symbol:AT2G18490 "AT2G18490" species...   210  4.1e-17   1
TAIR|locus:2172716 - symbol:AT5G22990 "AT5G22990" species...   205  1.9e-16   1
TAIR|locus:2053598 - symbol:AT2G15740 "AT2G15740" species...   190  1.2e-14   1
TAIR|locus:2163857 - symbol:AT5G42640 "AT5G42640" species...   184  3.5e-14   1
ZFIN|ZDB-GENE-030131-9559 - symbol:znf292b "zinc finger p...   102  0.00085   1


>TAIR|locus:2046318 [details] [associations]
            symbol:AT2G18490 "AT2G18490" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002685
            GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 EMBL:AC006135
            ProtClustDB:CLSN2683049 EMBL:AB493552 IPI:IPI00531928 PIR:H84564
            RefSeq:NP_179439.1 UniGene:At.52807 PRIDE:Q9ZU64
            EnsemblPlants:AT2G18490.1 GeneID:816364 KEGG:ath:AT2G18490
            TAIR:At2g18490 InParanoid:Q9ZU64 OMA:YGESQKI PhylomeDB:Q9ZU64
            ArrayExpress:Q9ZU64 Genevestigator:Q9ZU64 Uniprot:Q9ZU64
        Length = 251

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 49/103 (47%), Positives = 61/103 (59%)

Query:     1 KKKKAKYDGRTHSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAA 60
             K   A+YDGR HSLP+KK GPYTCPKCN  F  SQ +AAH+SS HYK ET ++RA+R  A
Sbjct:   148 KSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHMSS-HYKSETNKERAQRFRA 206

Query:    61 RYPKRNTLQPVDTSEGLTMMPVSSSAKKKGKRSVKNEGDQEQK 103
             R  KR   +       L +     S K K +  V N+G  + K
Sbjct:   207 RN-KRKYRK-------LNLEVYGESQKIKQEDGVHNDGRSDDK 241


>TAIR|locus:2172716 [details] [associations]
            symbol:AT5G22990 "AT5G22990" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0005622
            EMBL:AB005243 EMBL:AB026660 IPI:IPI00539123 RefSeq:NP_197690.1
            UniGene:At.65541 PaxDb:Q9FFA9 PRIDE:Q9FFA9 DNASU:832363
            EnsemblPlants:AT5G22990.1 GeneID:832363 KEGG:ath:AT5G22990
            TAIR:At5g22990 eggNOG:NOG260799 HOGENOM:HOG000152437
            InParanoid:Q9FFA9 OMA:HISSMHY PhylomeDB:Q9FFA9
            ProtClustDB:CLSN2683049 Genevestigator:Q9FFA9 Uniprot:Q9FFA9
        Length = 324

 Score = 205 (77.2 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     3 KKAKYDGRTHSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAARY 62
             K  +YDGRTHSLP++K GPYTCPKCN  F  SQ +AAH+SS HYK E+ E++ +R  AR 
Sbjct:   227 KDIEYDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMHYKNESIEEKFKRYNARN 286

Query:    63 PKR 65
              KR
Sbjct:   287 KKR 289


>TAIR|locus:2053598 [details] [associations]
            symbol:AT2G15740 "AT2G15740" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0005622
            EMBL:AC006248 HOGENOM:HOG000152437 ProtClustDB:CLSN2683049
            EMBL:AB493548 IPI:IPI00524627 PIR:G84532 RefSeq:NP_179176.1
            UniGene:At.66204 ProteinModelPortal:Q9ZQE0 SMR:Q9ZQE0
            EnsemblPlants:AT2G15740.1 GeneID:816068 KEGG:ath:AT2G15740
            TAIR:At2g15740 eggNOG:NOG265797 InParanoid:Q9ZQE0 OMA:SHYKNET
            PhylomeDB:Q9ZQE0 ArrayExpress:Q9ZQE0 Genevestigator:Q9ZQE0
            Uniprot:Q9ZQE0
        Length = 329

 Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query:     8 DGRTHSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAARYPKR 65
             DGRTHSLP++K GPYTCPKCN  F  SQ +AAH+SS HYK ET E+R +R+ A+  ++
Sbjct:   230 DGRTHSLPYEKYGPYTCPKCNGVFNTSQKFAAHMSS-HYKNETSEEREQRIRAKNKRK 286


>TAIR|locus:2163857 [details] [associations]
            symbol:AT5G42640 "AT5G42640" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0005622
            EMBL:AB013391 HOGENOM:HOG000152437 ProtClustDB:CLSN2683049
            IPI:IPI00526950 RefSeq:NP_199078.1 UniGene:At.55321
            EnsemblPlants:AT5G42640.1 GeneID:834272 KEGG:ath:AT5G42640
            TAIR:At5g42640 eggNOG:NOG327151 InParanoid:Q9FJV4 OMA:NIVFPHQ
            PhylomeDB:Q9FJV4 Genevestigator:Q9FJV4 Uniprot:Q9FJV4
        Length = 300

 Score = 184 (69.8 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query:     6 KYDGRTHSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAARYPKR 65
             +YDGRTHSLP+ K GPYTCP+CN  F  SQ +AAH+ S HY  ET ++R +R  AR  KR
Sbjct:   227 QYDGRTHSLPYTKYGPYTCPRCNGVFDTSQKFAAHMLS-HYNNETDKERDQRFRARNKKR 285


>ZFIN|ZDB-GENE-030131-9559 [details] [associations]
            symbol:znf292b "zinc finger protein 292b"
            species:7955 "Danio rerio" [GO:0005622 "intracellular"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] Pfam:PF00096
            InterPro:IPR007087 InterPro:IPR013087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
            ZFIN:ZDB-GENE-030131-9559 GO:GO:0008270 GO:GO:0003676 GO:GO:0005622
            Gene3D:3.30.160.60 EMBL:AL954744 GeneTree:ENSGT00530000063311
            IPI:IPI00506837 UniGene:Dr.77356 SMR:Q5SNS6
            Ensembl:ENSDART00000104790 HOGENOM:HOG000139585 HOVERGEN:HBG097315
            OMA:SHFIFCK Uniprot:Q5SNS6
        Length = 2620

 Score = 102 (41.0 bits), Expect = 0.00085, P = 0.00085
 Identities = 29/97 (29%), Positives = 41/97 (42%)

Query:    12 HSLPHKKNGPYTCPKCNQAFAKSQIYAAHVSSGHYKFETPEQRAERLAARYPKRNTLQPV 71
             H++ H K+G Y CP C + F   +    HV+S H K    E    RLAA    +    P 
Sbjct:   550 HAVTHFKDGSYFCPICLETFETKETLEPHVAS-HVKLSCKE----RLAAMKTSKQLASPK 604

Query:    72 DTSEGLTMMPVSSSAKKKGKRSVKNE-GDQEQKQRSK 107
               +  +  +   SS  +  K   K+  G Q  K  SK
Sbjct:   605 TATPDIPSLKAKSSENQVRKPKTKSSSGGQANKLSSK 641


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.122   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116       116   0.00091  102 3  11 23  0.43    31
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.71u 0.14s 18.85t   Elapsed:  00:00:01
  Total cpu time:  18.71u 0.14s 18.85t   Elapsed:  00:00:01
  Start:  Thu May  9 14:12:55 2013   End:  Thu May  9 14:12:56 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
