BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044365
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/303 (50%), Positives = 200/303 (66%), Gaps = 7/303 (2%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P P +V+ L KSN I ++R+++P QA LQAL++SN+++ L D+QSLA++PSAA +
Sbjct: 13 PPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDW 72
Query: 100 VQENVVAYSPGVKFSYITLGNEVIPGQ-YANFVFDAMQNMQNALKAANV--NVPVSTVVA 156
++ NVVAY P V F YI +GNE+IPG A ++ AM+N+ NAL +A + + VST V
Sbjct: 73 IRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIKVSTAVD 132
Query: 157 TSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYAL 216
T VLG+SYPPS F A A + IV FL N PLL NVY F Y P I+ YAL
Sbjct: 133 TGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLPYAL 192
Query: 217 GNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNL-ATMD 275
A+ V DG Y +FDA++DA++ A+E+VGG +V +VVSE+GWPSAG A+
Sbjct: 193 FTASGVV-VQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAEASTS 251
Query: 276 NAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPAGTEQNFGLFYPDMKPVYP 335
NA+ Y N+I+ V G GTP RP IEAYIF MFNENQK G EQNFGLFYP+ +PVY
Sbjct: 252 NAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGIEQNFGLFYPNKQPVYQ 309
Query: 336 VSI 338
+S
Sbjct: 310 ISF 312
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 190/302 (62%), Gaps = 11/302 (3%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P +VI L K + I ++RI++P QAVL+AL+ SN+EL LG N DLQSL T+PS A +
Sbjct: 14 PPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSW 72
Query: 100 VQENVVAYSPGVKFSYITLGNEVIP-----GQYANFVFDAMQNMQNALKAANVN--VPVS 152
VQ+NV + V+F YI +GNE+ P A FV AM+N+ +A+++A + + VS
Sbjct: 73 VQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVS 132
Query: 153 TVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINA 212
T + +++G+SYPPS F D + + I+ FL + PLLAN+Y F Y P +I+
Sbjct: 133 TAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYFTYAGNPRDISL 192
Query: 213 DYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNLA 272
YAL + V DG Y +FDA +DALY A+E+ G +++VVSE+GWPSAG A
Sbjct: 193 PYALFTSPSVV-VWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAA 251
Query: 273 TMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPAGTEQNFGLFYPDMKP 332
T DN + Y++N+IQ V +GTP RP IE Y+FAMF+EN+K E++FGLF+P+
Sbjct: 252 TFDNGRTYLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKKQPEVEKHFGLFFPNKWQ 309
Query: 333 VY 334
Y
Sbjct: 310 KY 311
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 191/309 (61%), Gaps = 19/309 (6%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P+ VI L +N I K+RI+ P V ALK SN+E+ L N+DL++LA +PS A +
Sbjct: 15 PSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGW 73
Query: 100 VQENVVAYSPGVKFSYITLGNEVIPGQ----YANFVFDAMQNMQNALKAANVN--VPVST 153
VQ+N+ + P VKF YI +GNEV PG+ YA FV AM+N+ NAL +A + + VST
Sbjct: 74 VQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVST 133
Query: 154 VVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINA- 212
+ +L ++YPP ++ F ++ + + I+ FL ++ PLLAN+Y PYF N NA
Sbjct: 134 STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY---PYFGHIDNTNAV 190
Query: 213 --DYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVN 270
YAL N Y +FDA++D++Y A EK+GG++++++VSE+GWPS G
Sbjct: 191 PLSYALFNQQRRNDTG-----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHP 245
Query: 271 LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPA-GTEQNFGLFYPD 329
AT+ NA+ Y N+I V G GTP +P IE Y+FAMF+EN+K +E++FGLF PD
Sbjct: 246 AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPD 305
Query: 330 MKPVYPVSI 338
+P Y ++
Sbjct: 306 QRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 190/309 (61%), Gaps = 19/309 (6%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P+ VI L +N I K+RI+ P V ALK SN+E+ L N+DL++LA +PS A +
Sbjct: 15 PSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGW 73
Query: 100 VQENVVAYSPGVKFSYITLGNEVIPGQ----YANFVFDAMQNMQNALKAANVN--VPVST 153
VQ+N+ + P VKF YI +GNEV PG+ YA FV AM+N+ NAL +A + + VST
Sbjct: 74 VQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVST 133
Query: 154 VVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINA- 212
+ +L ++YPP ++ F ++ + + I+ FL ++ PLLAN+Y PYF N NA
Sbjct: 134 STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY---PYFGHIDNTNAV 190
Query: 213 --DYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVN 270
YAL N Y +FDA++D++Y A EK+GG++++++VS +GWPS G
Sbjct: 191 PLSYALFNQQRRNDTG-----YQNLFDALVDSMYFATEKLGGQNIEIIVSASGWPSEGHP 245
Query: 271 LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPA-GTEQNFGLFYPD 329
AT+ NA+ Y N+I V G GTP +P IE Y+FAMF+EN+K +E++FGLF PD
Sbjct: 246 AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPD 305
Query: 330 MKPVYPVSI 338
+P Y ++
Sbjct: 306 QRPKYQLNF 314
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P V+ + KSN I +R++ P QA LQA+ + + + +G N+ L +LA P+AA +
Sbjct: 13 PAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASW 72
Query: 100 VQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANV-NVPVSTVVATS 158
V+ N+ AY P V F Y+ +GNEV G N V AM+N+ AL AA + ++ V+T V+ +
Sbjct: 73 VKSNIQAY-PKVSFRYVCVGNEVAGGATRNLV-PAMKNVHGALVAAGLGHIKVTTSVSQA 130
Query: 159 VLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGN 218
+LG PPS +F +A+A M +V FL + PL+AN+Y + P+ ++ YAL N
Sbjct: 131 ILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFN 190
Query: 219 ANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNLATMDNAK 278
A+ V DG+ Y +FD +DA Y AM K GG VKLVVSE+GWPS G AT NA+
Sbjct: 191 AS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGGTAATPANAR 249
Query: 279 AYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPAGTEQNFGLFYPDMKPVYPVSI 338
Y ++I V G+GTP P IE YIFAMFNENQK +G EQN+GLFYP+M+ VYP++
Sbjct: 250 FYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDSGVEQNWGLFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 163/299 (54%), Gaps = 9/299 (3%)
Query: 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKF 99
P+ V+ L +S IN +RI+ L AL++S + L L N+ L ++A S A +
Sbjct: 13 PSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASW 72
Query: 100 VQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN-VPVSTVVATS 158
VQ NV Y P V YI GNEV G + AM+N+ AL AA + + VST +
Sbjct: 73 VQNNVRPYYPAVNIKYIAAGNEV-QGGATQSILPAMRNLNAALSAAGLGAIKVSTSIRFD 131
Query: 159 VLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGN 218
+ +S+PPS F +A M + L PLLANVY F Y P +I+ +YA
Sbjct: 132 EVANSFPPSAGVF---KNAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQ 188
Query: 219 ANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNLATMDNAK 278
+ + Y ++FDAM+DA+Y A+EK G VK+VVSE+GWPSAG A+ NA+
Sbjct: 189 PGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGGFAASAGNAR 248
Query: 279 AYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPA-GTEQNFGLFYPDMKPVYPV 336
Y +I V G GTP + +E YIFAMFNENQK TE++FGLF PD P Y +
Sbjct: 249 TYNQGLINHV--GGGTPKKRE-ALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNI 304
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 313 NQKPAG--TEQNFGLFYPDMKPVYPVSI 338
N KP G TE+ F L Y D+ ++PV +
Sbjct: 133 NDKPVGIVTEREFLLLYKDLDEIFPVKV 160
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 168 NATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAE-----------PTNINADYAL 216
NAT AS +EK +F N YP ++ + E PT+++ ++A+
Sbjct: 30 NATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAI 89
Query: 217 GNANVAKGV-TDGSIHYN-TMFDAMIDA 242
A K + + + N T FD ++DA
Sbjct: 90 KAAEKGKHILLEKPVAXNVTEFDKIVDA 117
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 110 GVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVNVPVSTV--VATSVLGSSYPPS 167
G+ F+ G++ I + N F+ + + ++ NV++ T+ V S +G+ + P
Sbjct: 29 GLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPD 88
Query: 168 NATFGQDASA 177
N FGQ ++
Sbjct: 89 NYIFGQSSAG 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,176,685
Number of Sequences: 62578
Number of extensions: 357330
Number of successful extensions: 977
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 11
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)