Query 044365
Match_columns 339
No_of_seqs 129 out of 1135
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.3E-82 2.7E-87 608.5 20.3 307 28-338 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.2E-49 6.9E-54 360.0 22.2 249 21-330 39-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.2 5.2E-10 1.1E-14 108.3 16.9 240 42-337 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.2 6.2E-10 1.3E-14 105.8 14.3 154 28-200 30-216 (314)
5 PRK10150 beta-D-glucuronidase; 98.5 9.5E-05 2.1E-09 77.5 26.1 236 45-336 318-585 (604)
6 COG3867 Arabinogalactan endo-1 98.4 1.4E-05 3E-10 75.5 15.4 244 40-337 63-389 (403)
7 PF00150 Cellulase: Cellulase 98.2 8E-05 1.7E-09 69.3 16.2 121 26-148 9-165 (281)
8 smart00633 Glyco_10 Glycosyl h 98.0 0.00083 1.8E-08 62.8 18.5 211 65-336 20-251 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.3 0.009 2E-07 57.0 15.8 96 27-122 17-132 (298)
10 PF11790 Glyco_hydro_cc: Glyco 97.2 0.017 3.6E-07 53.7 15.9 209 52-332 18-232 (239)
11 PF02449 Glyco_hydro_42: Beta- 96.5 0.045 9.8E-07 54.0 12.8 94 31-124 1-140 (374)
12 TIGR03356 BGL beta-galactosida 95.9 1.8 3.9E-05 43.7 21.1 79 43-123 57-163 (427)
13 PRK09936 hypothetical protein; 94.1 0.4 8.8E-06 45.7 9.8 95 1-101 1-114 (296)
14 cd02875 GH18_chitobiase Chitob 91.4 5.4 0.00012 39.3 13.9 132 53-202 55-191 (358)
15 PF00232 Glyco_hydro_1: Glycos 87.3 0.14 3E-06 52.1 -0.8 277 43-335 61-442 (455)
16 cd02874 GH18_CFLE_spore_hydrol 85.6 5.5 0.00012 38.1 9.3 83 64-147 48-138 (313)
17 PRK09525 lacZ beta-D-galactosi 85.1 11 0.00024 42.5 12.5 98 28-125 353-466 (1027)
18 PF03662 Glyco_hydro_79n: Glyc 83.4 3.4 7.4E-05 40.2 6.8 173 65-269 113-300 (319)
19 PRK10340 ebgA cryptic beta-D-g 82.2 14 0.00029 41.7 11.8 98 28-125 337-453 (1021)
20 COG3934 Endo-beta-mannanase [C 78.6 7.1 0.00015 40.0 7.2 181 97-336 123-312 (587)
21 cd00598 GH18_chitinase-like Th 76.6 13 0.00029 32.7 7.9 82 65-147 53-142 (210)
22 PLN03059 beta-galactosidase; P 70.4 68 0.0015 35.4 12.6 113 44-156 63-223 (840)
23 PF00925 GTP_cyclohydro2: GTP 69.5 5.3 0.00012 35.1 3.5 38 45-82 131-168 (169)
24 smart00481 POLIIIAc DNA polyme 69.5 17 0.00038 26.2 5.8 45 39-83 14-63 (67)
25 cd02872 GH18_chitolectin_chito 68.6 34 0.00073 33.3 9.3 117 68-202 62-192 (362)
26 PRK13511 6-phospho-beta-galact 65.6 12 0.00026 38.3 5.6 46 43-88 57-121 (469)
27 PF01229 Glyco_hydro_39: Glyco 63.5 1.8E+02 0.0039 29.8 17.0 244 48-335 48-352 (486)
28 PF14488 DUF4434: Domain of un 62.7 95 0.0021 27.1 10.0 98 45-144 25-150 (166)
29 PLN02998 beta-glucosidase 62.5 12 0.00026 38.7 4.9 72 252-331 390-466 (497)
30 PLN02814 beta-glucosidase 61.6 19 0.00041 37.3 6.2 46 43-88 80-144 (504)
31 cd02876 GH18_SI-CLP Stabilin-1 60.9 82 0.0018 30.1 10.2 125 64-202 54-191 (318)
32 PRK09593 arb 6-phospho-beta-gl 59.8 23 0.0005 36.4 6.4 46 43-88 76-141 (478)
33 cd06545 GH18_3CO4_chitinase Th 59.6 31 0.00067 31.9 6.8 81 65-147 50-133 (253)
34 PRK09589 celA 6-phospho-beta-g 58.6 31 0.00067 35.4 7.1 45 43-87 70-134 (476)
35 PRK00393 ribA GTP cyclohydrola 58.0 18 0.00039 32.6 4.7 34 46-79 134-167 (197)
36 TIGR00505 ribA GTP cyclohydrol 57.8 18 0.0004 32.4 4.7 33 46-78 131-163 (191)
37 PLN02849 beta-glucosidase 56.9 17 0.00038 37.6 5.0 45 43-87 82-145 (503)
38 smart00636 Glyco_18 Glycosyl h 56.5 89 0.0019 29.9 9.7 121 67-202 57-188 (334)
39 cd06418 GH25_BacA-like BacA is 55.9 1.6E+02 0.0035 26.8 11.7 107 40-148 21-143 (212)
40 PRK15014 6-phospho-beta-glucos 49.0 44 0.00095 34.4 6.4 45 43-87 72-136 (477)
41 COG4782 Uncharacterized protei 48.7 56 0.0012 32.5 6.7 39 250-291 143-187 (377)
42 PLN00196 alpha-amylase; Provis 47.6 84 0.0018 31.8 8.1 60 25-84 26-116 (428)
43 cd00641 GTP_cyclohydro2 GTP cy 47.0 34 0.00073 30.7 4.7 36 46-81 133-168 (193)
44 PRK09852 cryptic 6-phospho-bet 46.8 62 0.0014 33.2 7.1 46 43-88 74-139 (474)
45 KOG0626 Beta-glucosidase, lact 46.6 54 0.0012 34.1 6.5 78 251-335 404-498 (524)
46 PF06180 CbiK: Cobalt chelatas 46.3 1.7E+02 0.0038 27.6 9.6 138 38-202 56-207 (262)
47 PF13721 SecD-TM1: SecD export 44.3 77 0.0017 25.4 5.9 55 5-59 11-65 (101)
48 COG1433 Uncharacterized conser 43.5 57 0.0012 27.2 5.2 40 43-82 55-94 (121)
49 cd02873 GH18_IDGF The IDGF's ( 43.4 2.8E+02 0.0061 27.8 11.1 58 127-202 167-224 (413)
50 PRK12485 bifunctional 3,4-dihy 43.3 31 0.00068 34.3 4.2 33 46-79 331-363 (369)
51 PRK14019 bifunctional 3,4-dihy 42.8 32 0.0007 34.1 4.2 35 46-81 328-362 (367)
52 PF00331 Glyco_hydro_10: Glyco 41.6 29 0.00063 33.6 3.6 214 65-335 63-312 (320)
53 PRK09318 bifunctional 3,4-dihy 41.3 42 0.0009 33.6 4.7 38 46-83 320-357 (387)
54 KOG0078 GTP-binding protein SE 40.5 69 0.0015 29.3 5.6 63 55-123 61-128 (207)
55 cd04743 NPD_PKS 2-Nitropropane 39.7 2.4E+02 0.0052 27.5 9.6 56 26-82 56-111 (320)
56 PRK14332 (dimethylallyl)adenos 39.4 4.3E+02 0.0092 26.9 14.7 191 39-264 182-397 (449)
57 PRK08815 GTP cyclohydrolase; P 39.4 46 0.001 33.2 4.7 37 46-82 305-341 (375)
58 TIGR01233 lacG 6-phospho-beta- 39.3 48 0.001 34.0 4.9 46 43-88 56-120 (467)
59 PRK09311 bifunctional 3,4-dihy 39.0 46 0.001 33.5 4.7 37 46-82 339-375 (402)
60 PRK09314 bifunctional 3,4-dihy 39.0 44 0.00096 32.9 4.4 34 45-78 300-334 (339)
61 PF05984 Cytomega_UL20A: Cytom 38.4 31 0.00068 26.9 2.6 30 1-30 1-30 (100)
62 PF01301 Glyco_hydro_35: Glyco 38.4 2.9E+02 0.0063 26.7 10.0 110 43-155 27-181 (319)
63 COG2730 BglC Endoglucanase [Ca 38.3 2.4E+02 0.0053 28.1 9.8 101 43-145 76-218 (407)
64 PF13547 GTA_TIM: GTA TIM-barr 38.2 37 0.00081 32.5 3.6 81 110-202 17-111 (299)
65 PF05990 DUF900: Alpha/beta hy 38.2 1.1E+02 0.0023 28.2 6.7 37 250-289 45-87 (233)
66 PRK09319 bifunctional 3,4-dihy 37.9 49 0.0011 34.7 4.7 37 46-82 343-379 (555)
67 PLN02831 Bifunctional GTP cycl 37.8 49 0.0011 33.8 4.6 37 46-82 373-409 (450)
68 TIGR03632 bact_S11 30S ribosom 37.4 82 0.0018 25.6 5.1 35 45-79 52-91 (108)
69 PF14871 GHL6: Hypothetical gl 37.1 86 0.0019 26.4 5.4 44 41-84 1-67 (132)
70 PRK07114 keto-hydroxyglutarate 36.9 3.4E+02 0.0073 25.0 10.4 69 38-124 118-193 (222)
71 COG3250 LacZ Beta-galactosidas 36.5 3.7E+02 0.0081 29.7 11.4 98 28-125 303-410 (808)
72 PF12876 Cellulase-like: Sugar 36.1 1E+02 0.0023 23.5 5.4 46 110-155 8-64 (88)
73 cd07937 DRE_TIM_PC_TC_5S Pyruv 35.0 3.4E+02 0.0074 25.5 9.7 89 45-142 96-191 (275)
74 PF02084 Bindin: Bindin; Inte 34.4 30 0.00065 31.9 2.3 25 133-157 104-128 (238)
75 COG1058 CinA Predicted nucleot 33.7 99 0.0021 29.2 5.7 63 112-195 3-66 (255)
76 PRK14042 pyruvate carboxylase 33.5 3.1E+02 0.0067 29.2 9.9 59 42-102 94-162 (596)
77 PRK13347 coproporphyrinogen II 32.6 58 0.0013 33.0 4.3 26 127-152 261-287 (453)
78 TIGR03628 arch_S11P archaeal r 32.4 1E+02 0.0023 25.4 5.0 36 44-79 54-102 (114)
79 TIGR00640 acid_CoA_mut_C methy 32.2 2.7E+02 0.0058 23.3 7.6 41 40-80 40-90 (132)
80 TIGR03822 AblA_like_2 lysine-2 31.9 2.6E+02 0.0056 27.0 8.5 39 46-84 159-207 (321)
81 cd06549 GH18_trifunctional GH1 30.3 3.1E+02 0.0068 26.0 8.7 93 88-202 81-173 (298)
82 PF02579 Nitro_FeMo-Co: Dinitr 29.9 1.9E+02 0.0041 21.7 6.0 42 39-80 39-80 (94)
83 PF02811 PHP: PHP domain; Int 29.8 1.3E+02 0.0028 25.1 5.5 47 37-83 13-64 (175)
84 PRK14327 (dimethylallyl)adenos 29.5 6.6E+02 0.014 26.1 14.7 137 39-203 240-404 (509)
85 PHA02754 hypothetical protein; 29.4 49 0.0011 24.0 2.2 25 130-154 15-42 (67)
86 TIGR01579 MiaB-like-C MiaB-lik 29.1 5.8E+02 0.013 25.3 15.2 137 39-203 166-330 (414)
87 PRK06552 keto-hydroxyglutarate 29.1 4.4E+02 0.0096 23.9 10.8 88 38-143 115-210 (213)
88 TIGR01182 eda Entner-Doudoroff 28.9 4.4E+02 0.0096 23.9 9.9 69 38-124 107-181 (204)
89 cd02879 GH18_plant_chitinase_c 28.9 4E+02 0.0088 25.2 9.2 156 71-260 63-235 (299)
90 PF13377 Peripla_BP_3: Peripla 28.8 2.6E+02 0.0056 22.8 7.1 118 47-185 2-133 (160)
91 TIGR01064 pyruv_kin pyruvate k 28.6 1.4E+02 0.003 30.7 6.3 69 65-144 261-336 (473)
92 COG0621 MiaB 2-methylthioadeni 28.4 6.5E+02 0.014 25.7 13.3 132 26-203 194-337 (437)
93 COG0807 RibA GTP cyclohydrolas 28.0 1.2E+02 0.0025 27.5 4.9 40 46-85 133-172 (193)
94 PRK12331 oxaloacetate decarbox 27.5 4.4E+02 0.0096 26.9 9.6 56 45-102 101-162 (448)
95 PRK07198 hypothetical protein; 27.4 60 0.0013 32.6 3.2 37 46-82 338-375 (418)
96 CHL00041 rps11 ribosomal prote 27.4 1.5E+02 0.0033 24.4 5.2 35 45-79 65-104 (116)
97 PF00411 Ribosomal_S11: Riboso 27.1 1.1E+02 0.0025 24.7 4.4 36 45-80 52-92 (110)
98 cd07944 DRE_TIM_HOA_like 4-hyd 26.9 5.3E+02 0.011 24.1 9.8 87 46-143 88-181 (266)
99 PRK09607 rps11p 30S ribosomal 26.5 1.6E+02 0.0035 24.9 5.3 36 44-79 61-109 (132)
100 PRK14339 (dimethylallyl)adenos 26.3 6.7E+02 0.015 25.1 14.9 60 127-203 263-322 (420)
101 COG3858 Predicted glycosyl hyd 25.9 1.7E+02 0.0036 29.7 6.0 90 63-155 149-248 (423)
102 PF08924 DUF1906: Domain of un 25.7 4E+02 0.0087 22.3 8.3 103 45-148 9-131 (136)
103 PF13956 Ibs_toxin: Toxin Ibs, 25.6 38 0.00083 18.7 0.8 16 1-16 1-16 (19)
104 PF00704 Glyco_hydro_18: Glyco 25.3 1.9E+02 0.0042 27.3 6.4 113 71-202 70-196 (343)
105 PLN03030 cationic peroxidase; 25.3 62 0.0013 31.6 2.9 19 29-47 24-42 (324)
106 COG5016 Pyruvate/oxaloacetate 24.9 1E+02 0.0022 31.3 4.2 41 43-83 97-147 (472)
107 PF05706 CDKN3: Cyclin-depende 24.8 1.2E+02 0.0025 26.9 4.2 62 23-85 38-110 (168)
108 COG2113 ProX ABC-type proline/ 24.7 1.9E+02 0.0041 27.9 6.1 40 46-86 51-91 (302)
109 PRK14024 phosphoribosyl isomer 24.1 5.1E+02 0.011 23.7 8.7 69 40-124 32-109 (241)
110 PRK05309 30S ribosomal protein 23.8 1.9E+02 0.0041 24.2 5.2 35 45-79 69-108 (128)
111 COG2896 MoaA Molybdenum cofact 23.8 6.1E+02 0.013 24.8 9.4 136 38-204 41-189 (322)
112 PRK14328 (dimethylallyl)adenos 23.8 7.5E+02 0.016 24.8 13.8 136 39-202 175-338 (439)
113 TIGR03234 OH-pyruv-isom hydrox 23.3 2.2E+02 0.0049 25.8 6.2 51 28-79 3-57 (254)
114 PRK14330 (dimethylallyl)adenos 22.5 7.9E+02 0.017 24.6 13.8 74 113-203 250-332 (434)
115 cd06542 GH18_EndoS-like Endo-b 22.4 2.8E+02 0.0061 25.3 6.6 82 64-146 54-145 (255)
116 PRK13210 putative L-xylulose 5 22.3 4.7E+02 0.01 23.9 8.2 104 41-148 17-148 (284)
117 PF01081 Aldolase: KDPG and KH 22.1 2.1E+02 0.0045 25.9 5.4 40 39-79 108-153 (196)
118 cd06547 GH85_ENGase Endo-beta- 22.0 7.5E+02 0.016 24.2 9.9 80 62-146 47-139 (339)
119 cd06156 eu_AANH_C_2 A group of 22.0 1.3E+02 0.0029 24.5 3.9 28 126-153 30-59 (118)
120 PF06117 DUF957: Enterobacteri 21.9 1.9E+02 0.0042 21.4 4.1 40 93-144 10-54 (65)
121 cd04723 HisA_HisF Phosphoribos 21.6 4.1E+02 0.0089 24.2 7.5 67 41-123 36-111 (233)
122 PRK13586 1-(5-phosphoribosyl)- 21.4 6.4E+02 0.014 23.1 9.4 69 40-124 30-107 (232)
123 cd01543 PBP1_XylR Ligand-bindi 21.2 5.9E+02 0.013 22.6 10.5 123 44-184 99-236 (265)
124 PF04909 Amidohydro_2: Amidohy 21.1 1.6E+02 0.0035 26.4 4.7 53 133-198 85-138 (273)
125 COG4669 EscJ Type III secretor 21.1 5E+02 0.011 24.4 7.7 52 40-109 31-82 (246)
126 PRK09997 hydroxypyruvate isome 21.0 6.3E+02 0.014 22.9 10.7 118 29-148 5-139 (258)
127 PRK14114 1-(5-phosphoribosyl)- 20.9 4.1E+02 0.0088 24.6 7.3 70 40-125 30-108 (241)
128 PRK12581 oxaloacetate decarbox 20.5 2.5E+02 0.0054 28.9 6.3 38 46-83 111-154 (468)
129 COG2355 Zn-dependent dipeptida 20.3 6E+02 0.013 24.7 8.5 151 33-203 46-228 (313)
130 PRK14336 (dimethylallyl)adenos 20.1 8.8E+02 0.019 24.2 13.4 146 29-202 139-315 (418)
131 PF04202 Mfp-3: Foot protein 3 20.1 89 0.0019 23.3 2.1 21 1-21 1-21 (71)
132 PF00977 His_biosynth: Histidi 20.1 2E+02 0.0043 26.2 5.0 71 39-125 28-108 (229)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.3e-82 Score=608.53 Aligned_cols=307 Identities=48% Similarity=0.815 Sum_probs=252.4
Q ss_pred ceEEecCCCCCCCCHHHHHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhc
Q 044365 28 LGVNYGLLGDNLPTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAY 107 (339)
Q Consensus 28 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 107 (339)
+|||||+.++++|+|.++++++|+++|++||+|++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC--cceeeeeeccccccccCCCCcccCcchHHHHHHHHHH
Q 044365 108 SPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN--VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSF 185 (339)
Q Consensus 108 ~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~--i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~f 185 (339)
++.++|++|+||||++.......|+|+|+++|++|++.||+ |||+|++.++++..+||||.|.|++++.++|+++++|
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~f 160 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKF 160 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHH
Confidence 99999999999999997643339999999999999999995 9999999999999999999999999999999999999
Q ss_pred HHhcCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEeeeccC
Q 044365 186 LQQNQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWP 265 (339)
Q Consensus 186 L~~~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWP 265 (339)
|.++++|+++|+||||.+..+|++|++|||+|++++ ... |++.+|+|+||+|+|++++||+++|+++++|+|+|||||
T Consensus 161 L~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~-~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 161 LDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNS-GVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS--SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred hhccCCCceeccchhhhccCCcccCCcccccccccc-ccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 999999999999999999999999999999999976 444 678899999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCCC-CCCCceeeecCCCceeecccC
Q 044365 266 SAGVNLATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPA-GTEQNFGLFYPDMKPVYPVSI 338 (339)
Q Consensus 266 s~G~~~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~~-~~E~~wGlf~~d~~~k~~l~~ 338 (339)
|+|+..|+++||+.|++++++++. .|||+||+..+++||||+|||+||++ ++|||||||++||+|||+|+|
T Consensus 239 s~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 239 SAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999999999999999999999984 89999999899999999999999994 499999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-49 Score=360.02 Aligned_cols=249 Identities=23% Similarity=0.360 Sum_probs=204.2
Q ss_pred ccccCccceEEecCCCCC--CCCHHHH---HHHHhhCCCCEEEecCCC----hHHHHHHhhCCCeEEEeeCCccchhccC
Q 044365 21 GTSSLGGLGVNYGLLGDN--LPTPDKV---IDLIKSNKINKVRIFEPK----QAVLQALKDSNLELALGTRNEDLQSLAT 91 (339)
Q Consensus 21 ~~~~~~~~Gi~Y~~~~~~--~~s~~~v---~~~l~~~~~~~VR~Y~~d----~~vl~A~~~~gikv~lGv~~~~~~~~a~ 91 (339)
.+++.++.||||+|++++ |||.+++ +++|++.+ ..||+|++| ++|++|+...|+||+||||..+.-+-+.
T Consensus 39 ~~sa~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~ 117 (305)
T COG5309 39 RASASGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAV 117 (305)
T ss_pred ccccccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhH
Confidence 335788999999999987 9999997 55666665 499999977 5799999999999999999976554332
Q ss_pred CHHHHHHHHHHhhhhcCCCceEEEEEccccccCC-C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCc
Q 044365 92 DPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG-Q-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNA 169 (339)
Q Consensus 92 ~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~ 169 (339)
++ -+...+.++..++.|++|+||||+|+| + ++++|+.+|..||.+|+.+|+++||+|+++|.+|.+ .|
T Consensus 118 ~~-----til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~-np---- 187 (305)
T COG5309 118 EK-----TILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVIN-NP---- 187 (305)
T ss_pred HH-----HHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeC-Ch----
Confidence 21 245567788889999999999999998 4 799999999999999999999999999999999876 23
Q ss_pred ccCcchHHHHHHHHHHHHhcCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHH
Q 044365 170 TFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEK 249 (339)
Q Consensus 170 ~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~ 249 (339)
.||++.|++|+|.||||+.. ++..+.+ .++-.|++-++ .
T Consensus 188 ---------------~l~~~SDfia~N~~aYwd~~------------------~~a~~~~----~f~~~q~e~vq----s 226 (305)
T COG5309 188 ---------------ELCQASDFIAANAHAYWDGQ------------------TVANAAG----TFLLEQLERVQ----S 226 (305)
T ss_pred ---------------HHhhhhhhhhcccchhcccc------------------chhhhhh----HHHHHHHHHHH----H
Confidence 28899999999999999952 1222222 34444555443 3
Q ss_pred hCCCCccEEEeeeccCCCCCC----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-C--CCCCc
Q 044365 250 VGGKDVKLVVSETGWPSAGVN----LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKP-A--GTEQN 322 (339)
Q Consensus 250 ~~~~~~~vvI~EtGWPs~G~~----~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~-~--~~E~~ 322 (339)
++..+|+++|+||||||.|.. .||++||+.|++++++.++ + .++++|+||+|||+||. + ++|+|
T Consensus 227 a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~--~G~d~fvfeAFdd~WK~~~~y~VEky 297 (305)
T COG5309 227 ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------S--CGYDVFVFEAFDDDWKADGSYGVEKY 297 (305)
T ss_pred hcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------c--cCccEEEeeeccccccCccccchhhc
Confidence 344569999999999999984 8999999999999999873 2 36999999999999998 2 69999
Q ss_pred eeeecCCC
Q 044365 323 FGLFYPDM 330 (339)
Q Consensus 323 wGlf~~d~ 330 (339)
||+++.|+
T Consensus 298 wGv~~s~~ 305 (305)
T COG5309 298 WGVLSSDR 305 (305)
T ss_pred eeeeccCC
Confidence 99999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.21 E-value=5.2e-10 Score=108.30 Aligned_cols=240 Identities=15% Similarity=0.162 Sum_probs=127.5
Q ss_pred HHHHHHHHhhCCCCEEEec---C------CC-hH---HHHHHhhCCCeEEEeeCCcc---------ch--hccCCHHHHH
Q 044365 42 PDKVIDLIKSNKINKVRIF---E------PK-QA---VLQALKDSNLELALGTRNED---------LQ--SLATDPSAAT 97 (339)
Q Consensus 42 ~~~v~~~l~~~~~~~VR~Y---~------~d-~~---vl~A~~~~gikv~lGv~~~~---------~~--~~a~~~~~a~ 97 (339)
..+++++||..|++.||+= + +| .. ..+.+++.||+|+|..--+| .+ ....+.+++.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999988874 1 12 23 44556789999999988764 11 1122334444
Q ss_pred HHHHHhh----hhcC-CCceEEEEEccccccCC--------CCHHHHHHHHHHHHHHHHhcCCCcceee--eeecccccc
Q 044365 98 KFVQENV----VAYS-PGVKFSYITLGNEVIPG--------QYANFVFDAMQNMQNALKAANVNVPVST--VVATSVLGS 162 (339)
Q Consensus 98 ~wv~~~v----~~~~-~~~~I~~I~VGNE~l~~--------~~~~~l~~~i~~vk~~l~~~gl~i~VsT--~~~~~~~~~ 162 (339)
+-|.+.. ...- .+...+.|-||||.-.+ ...+.+...++.-.+++++.+-+++|-. +...+
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~---- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD---- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS----
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc----
Confidence 3333221 1110 25778899999997653 2467788888888888887544344322 22111
Q ss_pred ccCCCCcccCcchHHHHHHHHHHHHh---cCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHH
Q 044365 163 SYPPSNATFGQDASAVMEKIVSFLQQ---NQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAM 239 (339)
Q Consensus 163 ~~Pps~~~f~~~~~~~~~~~l~fL~~---~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~ 239 (339)
. ...+-..+.|.. .-|+++++.||||... -+.+...
T Consensus 182 -----~--------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~----------------------------l~~l~~~ 220 (332)
T PF07745_consen 182 -----N--------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT----------------------------LEDLKNN 220 (332)
T ss_dssp -----H--------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-----------------------------HHHHHHH
T ss_pred -----h--------HHHHHHHHHHHhcCCCcceEEEecCCCCcch----------------------------HHHHHHH
Confidence 0 111122222222 3499999999999730 0112223
Q ss_pred HHHHHHHHHHhCCCCccEEEeeeccCCCCC-----------------CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 044365 240 IDALYVAMEKVGGKDVKLVVSETGWPSAGV-----------------NLATMDNAKAYVNNVIQRVSSGKGTPLRPSIPI 302 (339)
Q Consensus 240 ~da~~~a~~~~~~~~~~vvI~EtGWPs~G~-----------------~~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~ 302 (339)
++.+ .++. +|+|+|.|||||..-. -.+|++.|+.|++.+++.+.+.. . +.++
T Consensus 221 l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p---~--~~g~ 289 (332)
T PF07745_consen 221 LNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVP---N--GGGL 289 (332)
T ss_dssp HHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhc---c--CCeE
Confidence 3322 1333 5999999999999821 14689999999999999986422 1 2357
Q ss_pred cEEEEEee-cCCCCC--CCCCCce---eeecCCCceeeccc
Q 044365 303 EAYIFAMF-NENQKP--AGTEQNF---GLFYPDMKPVYPVS 337 (339)
Q Consensus 303 ~~~~F~~f-De~wK~--~~~E~~w---Glf~~d~~~k~~l~ 337 (339)
.+||-|-. -..+.. .....+| +||+.+|++--+|+
T Consensus 290 GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 290 GVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLD 330 (332)
T ss_dssp EEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGG
T ss_pred EEEeeccccccCCcccccCCCCCccccccCCCCCCCchHhh
Confidence 78876632 111110 0123333 89999999877664
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.16 E-value=6.2e-10 Score=105.82 Aligned_cols=154 Identities=23% Similarity=0.348 Sum_probs=88.3
Q ss_pred ceEEecCCCC-------C-CCCHH---HHHHHHhhCCCCEEEecCCCh-----HHHHHHhhCCCeEEEeeCCccchhccC
Q 044365 28 LGVNYGLLGD-------N-LPTPD---KVIDLIKSNKINKVRIFEPKQ-----AVLQALKDSNLELALGTRNEDLQSLAT 91 (339)
Q Consensus 28 ~Gi~Y~~~~~-------~-~~s~~---~v~~~l~~~~~~~VR~Y~~d~-----~vl~A~~~~gikv~lGv~~~~~~~~a~ 91 (339)
.||.|.|-++ | +-+++ .++.+||++|++.||+|+.|| ..++++++.||-|++.+.... .++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-ccccC
Confidence 6999988765 2 22222 247799999999999999873 589999999999999998652 22221
Q ss_pred -CH------HHHHHHHHHhhhhcCCCceEEEEEccccccCC----CCHHHHHHHHHHHHHHHHhcCCC-cceeeeeeccc
Q 044365 92 -DP------SAATKFVQENVVAYSPGVKFSYITLGNEVIPG----QYANFVFDAMQNMQNALKAANVN-VPVSTVVATSV 159 (339)
Q Consensus 92 -~~------~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~----~~~~~l~~~i~~vk~~l~~~gl~-i~VsT~~~~~~ 159 (339)
++ ....+ ...-|..|..=+++.+..+|||++.. ..++.+-.++|.+|+-+++.|+. |||+.+-.-.
T Consensus 109 ~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaaD~- 186 (314)
T PF03198_consen 109 SDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAADD- 186 (314)
T ss_dssp TS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE----
T ss_pred CCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEccCC-
Confidence 11 11222 22334444333799999999999975 25899999999999999999996 9999875321
Q ss_pred cccccCCCCcccCcchHHHHHHHHHHHH-----hcCCcceecccCC
Q 044365 160 LGSSYPPSNATFGQDASAVMEKIVSFLQ-----QNQYPLLANVYTC 200 (339)
Q Consensus 160 ~~~~~Pps~~~f~~~~~~~~~~~l~fL~-----~~~d~~~vNiyPy 200 (339)
...-.++.+||. +..|++++|.|-+
T Consensus 187 ----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 187 ----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp ----------------TTTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred ----------------hhHHHHHHHHhcCCCcccccceeeecccee
Confidence 011234555554 3568999999854
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.46 E-value=9.5e-05 Score=77.49 Aligned_cols=236 Identities=11% Similarity=0.107 Sum_probs=132.2
Q ss_pred HHHHHhhCCCCEEEecCC--ChHHHHHHhhCCCeEEEeeCCc---------------cchhcc------CCHHHHHHHHH
Q 044365 45 VIDLIKSNKINKVRIFEP--KQAVLQALKDSNLELALGTRNE---------------DLQSLA------TDPSAATKFVQ 101 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~--d~~vl~A~~~~gikv~lGv~~~---------------~~~~~a------~~~~~a~~wv~ 101 (339)
++++||..|++.||+-.. ++..+.+|...||-|+-=++.- +..... +..+...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 477899999999999532 5789999999999888644321 000010 01122223344
Q ss_pred HhhhhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHH
Q 044365 102 ENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEK 181 (339)
Q Consensus 102 ~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~ 181 (339)
..|..+.....|..=++|||.-.+. +.....++.+.+.+++.-=+=+|+.+.... . +|....
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~--~~~~~~~~~l~~~~k~~DptR~vt~~~~~~---~--~~~~~~----------- 459 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE--QGAREYFAPLAELTRKLDPTRPVTCVNVMF---A--TPDTDT----------- 459 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc--hhHHHHHHHHHHHHHhhCCCCceEEEeccc---C--Cccccc-----------
Confidence 4555544445678899999974321 122233344444444322113566554211 0 111000
Q ss_pred HHHHHHhcCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEee
Q 044365 182 IVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSE 261 (339)
Q Consensus 182 ~l~fL~~~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~E 261 (339)
+.+..|+++.|.|+=|-. ++... . .....++..++.. .+. + +||++++|
T Consensus 460 ----~~~~~Dv~~~N~Y~~wy~--~~~~~--------------~-----~~~~~~~~~~~~~----~~~-~-~kP~~isE 508 (604)
T PRK10150 460 ----VSDLVDVLCLNRYYGWYV--DSGDL--------------E-----TAEKVLEKELLAW----QEK-L-HKPIIITE 508 (604)
T ss_pred ----ccCcccEEEEcccceecC--CCCCH--------------H-----HHHHHHHHHHHHH----HHh-c-CCCEEEEc
Confidence 234469999999864321 10000 0 0011222222211 111 2 79999999
Q ss_pred eccCCCC------CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCCC---CCCCceeeecCCCce
Q 044365 262 TGWPSAG------VNLATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKPA---GTEQNFGLFYPDMKP 332 (339)
Q Consensus 262 tGWPs~G------~~~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~~---~~E~~wGlf~~d~~~ 332 (339)
.|+.+.- +..-|.+.|..|++...+.+. ++|. -+..|+..+||-.+..+ .-..+.||++.||+|
T Consensus 509 yg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~------~~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~ 581 (604)
T PRK10150 509 YGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD------RVPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQP 581 (604)
T ss_pred cCCccccccccCCCCCCCHHHHHHHHHHHHHHHh------cCCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCC
Confidence 9976532 124578999999988887764 2343 57789999999544321 123578999999999
Q ss_pred eecc
Q 044365 333 VYPV 336 (339)
Q Consensus 333 k~~l 336 (339)
|-..
T Consensus 582 k~~~ 585 (604)
T PRK10150 582 KSAA 585 (604)
T ss_pred hHHH
Confidence 9653
No 6
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.4e-05 Score=75.52 Aligned_cols=244 Identities=16% Similarity=0.250 Sum_probs=133.8
Q ss_pred CCHHHHHHHHhhCCCCEEEec------CCC-----------h---HHHHHHhhCCCeEEEeeCCccc---hhcc------
Q 044365 40 PTPDKVIDLIKSNKINKVRIF------EPK-----------Q---AVLQALKDSNLELALGTRNEDL---QSLA------ 90 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y------~~d-----------~---~vl~A~~~~gikv~lGv~~~~~---~~~a------ 90 (339)
--.++.+++||.+|++.||+- +.| . .+-+.+++.||||++..-.+|- +.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW 142 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAW 142 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHh
Confidence 345678999999999988873 333 1 2345566799999998876541 1110
Q ss_pred --CCHHHHHHHHH---Hhhhh-cC-CCceEEEEEccccccCC------C--CHHHHHHHHHHHHHHHHhcCCCcceeeee
Q 044365 91 --TDPSAATKFVQ---ENVVA-YS-PGVKFSYITLGNEVIPG------Q--YANFVFDAMQNMQNALKAANVNVPVSTVV 155 (339)
Q Consensus 91 --~~~~~a~~wv~---~~v~~-~~-~~~~I~~I~VGNE~l~~------~--~~~~l~~~i~~vk~~l~~~gl~i~VsT~~ 155 (339)
-+-+..+.-|- +.+.. .. -...+..|-||||.-.+ + .-+.+...+..--++++...=+|+|---.
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHl 222 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHL 222 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEe
Confidence 01111111111 01111 10 14567889999998643 1 23445555555555555432235543322
Q ss_pred eccccccccCCCCcccCcchHHHHHHHHHHHHh---cCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccc
Q 044365 156 ATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQ---NQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHY 232 (339)
Q Consensus 156 ~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~---~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y 232 (339)
+ + |--.+.|+ -+.+.|.+ .-|.+++--||||... ..+ ++
T Consensus 223 a-----~--g~~n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgt--------------------l~n--L~- 264 (403)
T COG3867 223 A-----E--GENNSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGT--------------------LNN--LT- 264 (403)
T ss_pred c-----C--CCCCchhh--------HHHHHHHHcCCCceEEeeeccccccCc--------------------HHH--HH-
Confidence 1 1 11123333 11222222 2278899999999842 101 11
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCccEEEeeecc--------------CCCCCC---CCCHHHHHHHHHHHHHHHhcCCCCC
Q 044365 233 NTMFDAMIDALYVAMEKVGGKDVKLVVSETGW--------------PSAGVN---LATMDNAKAYVNNVIQRVSSGKGTP 295 (339)
Q Consensus 233 ~n~~da~~da~~~a~~~~~~~~~~vvI~EtGW--------------Ps~G~~---~as~~na~~y~~~~~~~~~~~~gtp 295 (339)
+||-| +- .+ -+|.|+|.||+. |+.+.. ..|+.-|.+|.+.+++.+.. +|
T Consensus 265 ~nl~d-ia-------~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp 330 (403)
T COG3867 265 TNLND-IA-------SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VP 330 (403)
T ss_pred hHHHH-HH-------HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CC
Confidence 12211 11 12 268999999998 766653 57778899999999998853 33
Q ss_pred CCCCCCccEEEEE-------------------eecCCCCCCCCCCceeeecCCCceeeccc
Q 044365 296 LRPSIPIEAYIFA-------------------MFNENQKPAGTEQNFGLFYPDMKPVYPVS 337 (339)
Q Consensus 296 ~~~~~~~~~~~F~-------------------~fDe~wK~~~~E~~wGlf~~d~~~k~~l~ 337 (339)
+.. +..+|+.| .-.|+|+.+..-.+=-||+.+|.|-.+|+
T Consensus 331 ~~~--GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~ 389 (403)
T COG3867 331 KSN--GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLN 389 (403)
T ss_pred CCC--ceEEEEecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchh
Confidence 332 46666655 12344544322233358888888877765
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.19 E-value=8e-05 Score=69.27 Aligned_cols=121 Identities=19% Similarity=0.107 Sum_probs=79.5
Q ss_pred ccceEEecCCCCCCCCHHHHHHHHhhCCCCEEEecCC-------------C-------hHHHHHHhhCCCeEEEeeCCcc
Q 044365 26 GGLGVNYGLLGDNLPTPDKVIDLIKSNKINKVRIFEP-------------K-------QAVLQALKDSNLELALGTRNED 85 (339)
Q Consensus 26 ~~~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~-------------d-------~~vl~A~~~~gikv~lGv~~~~ 85 (339)
...|+|-. +.+.- ..+++++.+++.|++.||+.-. + ..+++++++.||+|+|.+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 44567665 22111 7788999999999999999621 1 3578889999999999887630
Q ss_pred ----chhccCCHHHHHHHHHH---hh-hhcCCCceEEEEEccccccCCCC--------HHHHHHHHHHHHHHHHhcCCC
Q 044365 86 ----LQSLATDPSAATKFVQE---NV-VAYSPGVKFSYITLGNEVIPGQY--------ANFVFDAMQNMQNALKAANVN 148 (339)
Q Consensus 86 ----~~~~a~~~~~a~~wv~~---~v-~~~~~~~~I~~I~VGNE~l~~~~--------~~~l~~~i~~vk~~l~~~gl~ 148 (339)
.............|+++ .+ ..|-....|.++=+.||+..... ...+.+.++.+-+++++.+-+
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 11111222323333322 22 23323456889999999987521 378889999999999998865
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.97 E-value=0.00083 Score=62.81 Aligned_cols=211 Identities=11% Similarity=0.092 Sum_probs=113.0
Q ss_pred HHHHHHhhCCCeEEE--eeCCccchh-c-----cCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCC-------CHH
Q 044365 65 AVLQALKDSNLELAL--GTRNEDLQS-L-----ATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQ-------YAN 129 (339)
Q Consensus 65 ~vl~A~~~~gikv~l--Gv~~~~~~~-~-----a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-------~~~ 129 (339)
.+++.+++.||+|-- -+|....+. + ++..++..+++++.+..| ...|...-|.||.+..+ ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 456667777877632 245433222 1 112445567777766666 46799999999998532 111
Q ss_pred HHH--HHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCC---cceecccCCCccC
Q 044365 130 FVF--DAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQY---PLLANVYTCFPYF 204 (339)
Q Consensus 130 ~l~--~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d---~~~vNiyPyf~~~ 204 (339)
..+ .+|...-+..++..=++++-.-+ .++.. ++ .-+..+..+++.|.+.+- -+++..|-+...
T Consensus 98 ~~~G~~~i~~af~~ar~~~P~a~l~~Nd-y~~~~---~~-------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~- 165 (254)
T smart00633 98 QILGEDYIEKAFRYAREADPDAKLFYND-YNTEE---PN-------AKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGS- 165 (254)
T ss_pred HhcChHHHHHHHHHHHHhCCCCEEEEec-cCCcC---cc-------HHHHHHHHHHHHHHHCCCccceeeeeeeecCCC-
Confidence 222 34444444444433123333322 11111 10 011233455555555433 334333321100
Q ss_pred CCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCCCHHHHHHHHHHH
Q 044365 205 AEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNLATMDNAKAYVNNV 284 (339)
Q Consensus 205 ~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~ 284 (339)
| + ++.+...|++.+..++||+|||.+-|..+ +++.|+.+++.+
T Consensus 166 --~--------------------------~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~ 208 (254)
T smart00633 166 --P--------------------------N-----IAEIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEV 208 (254)
T ss_pred --C--------------------------C-----HHHHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHH
Confidence 0 0 11122333343334799999999999753 448899999999
Q ss_pred HHHHhcCCCCCCCCCCCccEEEEEeecC-CCCCCCCCCceeeecCCCceeecc
Q 044365 285 IQRVSSGKGTPLRPSIPIEAYIFAMFNE-NQKPAGTEQNFGLFYPDMKPVYPV 336 (339)
Q Consensus 285 ~~~~~~~~gtp~~~~~~~~~~~F~~fDe-~wK~~~~E~~wGlf~~d~~~k~~l 336 (339)
+..+.+. |. ...+++..+.|. .|.+ +.+-|||+.|++||..+
T Consensus 209 l~~~~~~------p~-v~gi~~Wg~~d~~~W~~---~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 209 FKACLAH------PA-VTGVTVWGVTDKYSWLD---GGAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHcC------CC-eeEEEEeCCccCCcccC---CCCceeECCCCCCChhh
Confidence 9988542 22 245666666664 3442 24679999999999765
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.35 E-value=0.009 Score=56.96 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=56.1
Q ss_pred cceEEecCCCCC---CCCHHHH---HHHHhhCCCCEEEecCC--ChHHHHHHhhCCCeEEEeeCCccc---hhc------
Q 044365 27 GLGVNYGLLGDN---LPTPDKV---IDLIKSNKINKVRIFEP--KQAVLQALKDSNLELALGTRNEDL---QSL------ 89 (339)
Q Consensus 27 ~~Gi~Y~~~~~~---~~s~~~v---~~~l~~~~~~~VR~Y~~--d~~vl~A~~~~gikv~lGv~~~~~---~~~------ 89 (339)
..|+|+...... ..+.+++ +++||+.|++.||+..- ++..+..|.+.||-|+..++.... +..
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 358998764433 4555543 67889999999999743 589999999999999987765110 000
Q ss_pred ---cCCHHHHHHHHHHhhhhcCCCceEEEEEccccc
Q 044365 90 ---ATDPSAATKFVQENVVAYSPGVKFSYITLGNEV 122 (339)
Q Consensus 90 ---a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~ 122 (339)
....+.+.+-++..|..+.....|..=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011223334445555554433467788899998
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.24 E-value=0.017 Score=53.72 Aligned_cols=209 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred CCCCEEEecCCChHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC---C-C
Q 044365 52 NKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG---Q-Y 127 (339)
Q Consensus 52 ~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~---~-~ 127 (339)
.+++-.=-+++.+.-. ....+++-+-.+|.....+ ..|++ ++... ...++.|..=||+=.. + +
T Consensus 18 ~~~sW~YnW~~~~~~~--~~~~~~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~ 84 (239)
T PF11790_consen 18 SNVSWYYNWGSSPSGS--LDSAGLEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMS 84 (239)
T ss_pred CCcEEEeCCCCCCCCC--CCCCceeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCC
Confidence 3466664445433211 1122378888888644322 11222 22221 3568889989998763 2 6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHH--hcCCcceecccCCCccCC
Q 044365 128 ANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQ--QNQYPLLANVYTCFPYFA 205 (339)
Q Consensus 128 ~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~--~~~d~~~vNiyPyf~~~~ 205 (339)
+++.+...++..+.|+..| +++..+..-..-. . +|+.. .-++..++-.. ...|++.+|.| ..
T Consensus 85 p~~aa~~w~~~~~~~~~~~--~~l~sPa~~~~~~-~-~~~g~-------~Wl~~F~~~~~~~~~~D~iavH~Y---~~-- 148 (239)
T PF11790_consen 85 PEEAAALWKQYMNPLRSPG--VKLGSPAVAFTNG-G-TPGGL-------DWLSQFLSACARGCRVDFIAVHWY---GG-- 148 (239)
T ss_pred HHHHHHHHHHHHhHhhcCC--cEEECCeecccCC-C-CCCcc-------HHHHHHHHhcccCCCccEEEEecC---Cc--
Confidence 8888888888777777544 6666554311000 0 01111 23344333221 25566666666 10
Q ss_pred CCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCCCHHHHHHHHHHHH
Q 044365 206 EPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVNLATMDNAKAYVNNVI 285 (339)
Q Consensus 206 ~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~~ 285 (339)
+. .-|...++.+ .++. +|||+|||.|+.. +....+.++++.|.+..+
T Consensus 149 ~~--------------------------~~~~~~i~~~---~~~~---~kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~ 195 (239)
T PF11790_consen 149 DA--------------------------DDFKDYIDDL---HNRY---GKPIWITEFGCWN-GGSQGSDEQQASFLRQAL 195 (239)
T ss_pred CH--------------------------HHHHHHHHHH---HHHh---CCCEEEEeecccC-CCCCCCHHHHHHHHHHHH
Confidence 00 0122233333 2333 3999999999877 445789999999999999
Q ss_pred HHHhcCCCCCCCCCCCccEEEEEeecCCCCCCCCCCceeeecCCCce
Q 044365 286 QRVSSGKGTPLRPSIPIEAYIFAMFNENQKPAGTEQNFGLFYPDMKP 332 (339)
Q Consensus 286 ~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~~~~E~~wGlf~~d~~~ 332 (339)
.++.+. +. --.++||...+. + ......-.|++.+|++
T Consensus 196 ~~ld~~------~~-VeryawF~~~~~-~--~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 196 PWLDSQ------PY-VERYAWFGFMND-G--SGVNPNSALLDADGSL 232 (239)
T ss_pred HHHhcC------CC-eeEEEecccccc-c--CCCccccccccCCCCc
Confidence 998532 22 346778883332 2 2456666788878865
No 11
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=96.47 E-value=0.045 Score=53.97 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=57.8
Q ss_pred EecCCCCCCCCHHHHHHHHhhCCCCEEEecCC-------C---------hHHHHHHhhCCCeEEEeeCCccch-------
Q 044365 31 NYGLLGDNLPTPDKVIDLIKSNKINKVRIFEP-------K---------QAVLQALKDSNLELALGTRNEDLQ------- 87 (339)
Q Consensus 31 ~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~-------d---------~~vl~A~~~~gikv~lGv~~~~~~------- 87 (339)
||-|-.-+.-.-++++++|+..|++.|||-.. . ..+|..+++.||+|+|+++....+
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 34443333334467899999999999998432 1 368888999999999999743111
Q ss_pred -h------------------ccC----CHHHHHHHHHHhhhhcCCCceEEEEEccccccC
Q 044365 88 -S------------------LAT----DPSAATKFVQENVVAYSPGVKFSYITLGNEVIP 124 (339)
Q Consensus 88 -~------------------~a~----~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 124 (339)
. ..- -.+.+.+.++.-+..|-....|.++.|+||.-.
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 000 134455656555556655567999999999765
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=95.90 E-value=1.8 Score=43.71 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=48.7
Q ss_pred HHHHHHHhhCCCCEEEecC------------CC-------hHHHHHHhhCCCeEEEeeCCccchh-cc-----CCH---H
Q 044365 43 DKVIDLIKSNKINKVRIFE------------PK-------QAVLQALKDSNLELALGTRNEDLQS-LA-----TDP---S 94 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~------------~d-------~~vl~A~~~~gikv~lGv~~~~~~~-~a-----~~~---~ 94 (339)
++++++|++.|++++|+=- .| .+++..+.+.||++++.+.--+++. +. .+. +
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 4678999999999998631 12 3689999999999999995434332 11 122 2
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEcccccc
Q 044365 95 AATKFVQENVVAYSPGVKFSYITLGNEVI 123 (339)
Q Consensus 95 ~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 123 (339)
...+..+.-...| .+.|+....=||..
T Consensus 137 ~f~~ya~~~~~~~--~d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAVVAERL--GDRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHh--CCcCCEEEEecCcc
Confidence 2233333333333 34677766667764
No 13
>PRK09936 hypothetical protein; Provisional
Probab=94.13 E-value=0.4 Score=45.74 Aligned_cols=95 Identities=12% Similarity=0.243 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHHHHHhhcccccccCccceEEecCCCCC-CCCHHH---HHHHHhhCCCCEEEec-----CCC--------
Q 044365 1 MARLVLIFFIVACLKTAAPAGTSSLGGLGVNYGLLGDN-LPTPDK---VIDLIKSNKINKVRIF-----EPK-------- 63 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Y~~~~~~-~~s~~~---v~~~l~~~~~~~VR~Y-----~~d-------- 63 (339)
|.+|.+++++++|+..-+ . .-.|+=|.|.+.| --++++ ..+.++..|++.+=+- ++|
T Consensus 1 m~~~~~~~l~~l~~~~~~--~----a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~L 74 (296)
T PRK09936 1 MRKFIFVLLTLLLVSPFS--Q----AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWL 74 (296)
T ss_pred ChhHHHHHHHHHHcCchh--h----ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHH
Confidence 667766666666633211 1 1146779999877 566666 4666777899776542 222
Q ss_pred hHHHHHHhhCCCeEEEeeCCcc--chhccCCHHHHHHHHH
Q 044365 64 QAVLQALKDSNLELALGTRNED--LQSLATDPSAATKFVQ 101 (339)
Q Consensus 64 ~~vl~A~~~~gikv~lGv~~~~--~~~~a~~~~~a~~wv~ 101 (339)
.+.++++.+.||+|.+|++.|. -+++..+..+.+.|++
T Consensus 75 a~~l~~A~~~Gl~v~vGL~~Dp~y~q~~~~d~~~~~~yl~ 114 (296)
T PRK09936 75 AKRLAAAQQAGLKLVVGLYADPEFFMHQKQDGAALESYLN 114 (296)
T ss_pred HHHHHHHHHcCCEEEEcccCChHHHHHHhcCchhHHHHHH
Confidence 4788889999999999999863 2223334344444544
No 14
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.37 E-value=5.4 Score=39.28 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCEEEecCC-ChHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC---CCH
Q 044365 53 KINKVRIFEP-KQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG---QYA 128 (339)
Q Consensus 53 ~~~~VR~Y~~-d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~---~~~ 128 (339)
.++.|-+|+. |++++..+++.|++|++..-.. .+.+ .+.+...+++++.+ .+......++|-+==|-... ...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4688888864 7899999999999999864322 2223 35555555555433 22222345666665454321 245
Q ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccC-cchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 129 NFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFG-QDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 129 ~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~-~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
+.+..-|+++|++|++.|....+|.+..+. |+....+ -|+ +-|++..|++.+-.|=|..
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsvav~~~-------p~~~~~~~yd~--------~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFDVAWS-------PSCIDKRCYDY--------TGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEecC-------cccccccccCH--------HHHHhhCCEeeEEeecccC
Confidence 788899999999999876443344443321 1110000 021 2367788999998887653
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=87.26 E-value=0.14 Score=52.06 Aligned_cols=277 Identities=18% Similarity=0.189 Sum_probs=132.6
Q ss_pred HHHHHHHhhCCCCEEEecC------C-------C-------hHHHHHHhhCCCeEEEeeCCccchh-cc-----CCHH--
Q 044365 43 DKVIDLIKSNKINKVRIFE------P-------K-------QAVLQALKDSNLELALGTRNEDLQS-LA-----TDPS-- 94 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~------~-------d-------~~vl~A~~~~gikv~lGv~~~~~~~-~a-----~~~~-- 94 (339)
+|++++|++.|++..|+== + | .+++..|.+.||+-++.+.--+++. +. .+.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 4689999999999988641 1 2 3689999999999999998655443 11 1111
Q ss_pred -HHHHHHHHhhhhcCCCceEEEEEccccccC--------C------CCH-------HHHHHHHHHHHHHHHhcCCCccee
Q 044365 95 -AATKFVQENVVAYSPGVKFSYITLGNEVIP--------G------QYA-------NFVFDAMQNMQNALKAANVNVPVS 152 (339)
Q Consensus 95 -~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~--------~------~~~-------~~l~~~i~~vk~~l~~~gl~i~Vs 152 (339)
...+-.+.-...| .+.|+.-+.=||... + .+. ..++-+-..+.+.+++.+-+.+|+
T Consensus 141 ~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IG 218 (455)
T PF00232_consen 141 DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIG 218 (455)
T ss_dssp HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEE
T ss_pred HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEe
Confidence 1222222223344 477888888898763 1 122 234444445556666655447777
Q ss_pred eeeecccccc--ccCCCC---cccCcchH--------------HHHHH--------------HHHHHHhcCCcceecccC
Q 044365 153 TVVATSVLGS--SYPPSN---ATFGQDAS--------------AVMEK--------------IVSFLQQNQYPLLANVYT 199 (339)
Q Consensus 153 T~~~~~~~~~--~~Pps~---~~f~~~~~--------------~~~~~--------------~l~fL~~~~d~~~vNiyP 199 (339)
.+.......- ..|+.. +...+++. ..|+. -++.|....|++++|-|.
T Consensus 219 i~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt 298 (455)
T PF00232_consen 219 IALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYT 298 (455)
T ss_dssp EEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESE
T ss_pred ccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcccc
Confidence 7776543311 001110 00000000 01111 112234579999999985
Q ss_pred CCccCCCC-CCcCcccc---cccC---CccccccCCCcc-chhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCC-
Q 044365 200 CFPYFAEP-TNINADYA---LGNA---NVAKGVTDGSIH-YNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVN- 270 (339)
Q Consensus 200 yf~~~~~p-~~i~~~~a---~f~~---~~~~~~~~~~~~-y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~~- 270 (339)
=---...| ...+..+. .+.. +. ....+.+.. |..- +.+.+...-++ ++++||+|||.|++.....
T Consensus 299 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~gw~i~P~G---l~~~L~~l~~~--Y~~~pI~ITENG~~~~~~~~ 372 (455)
T PF00232_consen 299 SRYVRADPNPSSPPSYDSDAPFGQPYNPG-GPTTDWGWEIYPEG---LRDVLRYLKDR--YGNPPIYITENGIGDPDEVD 372 (455)
T ss_dssp EEEEEESSSSTSSTTHEEEESEEEECETS-SEBCTTSTBBETHH---HHHHHHHHHHH--HTSSEEEEEEE---EETTCT
T ss_pred ceeeccCccccccccccCCcccccccccc-ccccccCcccccch---Hhhhhhhhccc--cCCCcEEEeccccccccccc
Confidence 33222222 11111111 0100 00 001112211 1111 12222221122 4579999999999877642
Q ss_pred ------CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-CCCCCceeeecCC------Cceeec
Q 044365 271 ------LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKP-AGTEQNFGLFYPD------MKPVYP 335 (339)
Q Consensus 271 ------~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~-~~~E~~wGlf~~d------~~~k~~ 335 (339)
.--+.--+.+++.+.+.+. .|-+ -..+|..++.| ++-- .+..+.|||++-| |+||-+
T Consensus 373 ~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~-----V~GY~~WSl~D-n~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 373 DGKVDDDYRIDYLQDHLNQVLKAIE--DGVN-----VRGYFAWSLLD-NFEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp TSHBSHHHHHHHHHHHHHHHHHHHH--TT-E-----EEEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccCcCcHHHHHHHHHHHHHHHhhhc--cCCC-----eeeEeeecccc-ccccccCccCccCceEEcCCCCcCeeeccH
Confidence 1112223455555555553 2321 34577778888 3322 4688999999999 888754
No 16
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=85.58 E-value=5.5 Score=38.09 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=53.9
Q ss_pred hHHHHHHhhCCCeEEEeeCCcc--------chhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCCCHHHHHHHH
Q 044365 64 QAVLQALKDSNLELALGTRNED--------LQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAM 135 (339)
Q Consensus 64 ~~vl~A~~~~gikv~lGv~~~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i 135 (339)
++++.++++.|+||++.|.+.. ...+..+.+...+.++ ++..+.....+.+|.+-=|.+..+........|
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl 126 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPPEDREAYTQFL 126 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCHHHHHHHHHHH
Confidence 6888999889999999886532 1234445444344443 333332223456776666665444567789999
Q ss_pred HHHHHHHHhcCC
Q 044365 136 QNMQNALKAANV 147 (339)
Q Consensus 136 ~~vk~~l~~~gl 147 (339)
+++|.+|++.|+
T Consensus 127 ~~lr~~l~~~~~ 138 (313)
T cd02874 127 RELSDRLHPAGY 138 (313)
T ss_pred HHHHHHhhhcCc
Confidence 999999988775
No 17
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=85.10 E-value=11 Score=42.48 Aligned_cols=98 Identities=22% Similarity=0.165 Sum_probs=60.0
Q ss_pred ceEEecCCCCC---CCCHHH---HHHHHhhCCCCEEEecCC--ChHHHHHHhhCCCeEEEeeCCcc-----chhccCCH-
Q 044365 28 LGVNYGLLGDN---LPTPDK---VIDLIKSNKINKVRIFEP--KQAVLQALKDSNLELALGTRNED-----LQSLATDP- 93 (339)
Q Consensus 28 ~Gi~Y~~~~~~---~~s~~~---v~~~l~~~~~~~VR~Y~~--d~~vl~A~~~~gikv~lGv~~~~-----~~~~a~~~- 93 (339)
.|+|+-..... ..++++ .+++||..|++.||+-.. ++..++.|.+.||-|+--++... ...+..+.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 47777533222 356655 477889999999999543 57899999999998887654321 00111111
Q ss_pred --HHHHHHHHHhhhhcCCCceEEEEEccccccCC
Q 044365 94 --SAATKFVQENVVAYSPGVKFSYITLGNEVIPG 125 (339)
Q Consensus 94 --~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~ 125 (339)
++...-+++.|........|..=++|||.-.+
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g 466 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG 466 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC
Confidence 12222234444444334578888999997443
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=83.43 E-value=3.4 Score=40.17 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred HHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcC-----CCceEEEEEccccccC-C---C-CHHHHHHH
Q 044365 65 AVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYS-----PGVKFSYITLGNEVIP-G---Q-YANFVFDA 134 (339)
Q Consensus 65 ~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~-----~~~~I~~I~VGNE~l~-~---~-~~~~l~~~ 134 (339)
++-+-+.++|++|+.|+..-.-.........-..|=-+|-..+. ..-.|.+-=.|||.-- + . ++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 45555678999999999742111110111233566655543322 2345777788999543 1 1 58888888
Q ss_pred HHHHHHHHHhc----CCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHh-cCCcceecccCCCccCCCCCC
Q 044365 135 MQNMQNALKAA----NVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQ-NQYPLLANVYTCFPYFAEPTN 209 (339)
Q Consensus 135 i~~vk~~l~~~----gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~-~~d~~~vNiyPyf~~~~~p~~ 209 (339)
...+|+.|+.. ...-.|.-+.. .|.. +.+++.|+-..+ ..|.+.-|+|+. ....++.
T Consensus 193 ~~~Lr~il~~iy~~~~~~P~v~gP~~-------------~~d~---~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~- 254 (319)
T PF03662_consen 193 FIQLRKILNEIYKNALPGPLVVGPGG-------------FFDA---DWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA- 254 (319)
T ss_dssp H---HHHHHHHHHH-TT---EEEEEE-------------SS-G---GGHHHHHHHTTTT--SEEEEEEEEE---TT-TT-
T ss_pred HHHHHHHHHHHHhcCCCCCeEECCCC-------------CCCH---HHHHHHHHhcCCCccCEEEEEecCC-CCCchHH-
Confidence 88888888762 00112333321 1222 234444443333 368888899853 3222210
Q ss_pred cCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCC
Q 044365 210 INADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGV 269 (339)
Q Consensus 210 i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~ 269 (339)
. .+ . .-+. .|-+.+..++..+...+++. .+++++|++|||=...|+
T Consensus 255 l-~~-~---------~l~p--~~Ld~~~~~~~~~~~~v~~~-~p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 255 L-IE-D---------FLNP--SYLDTLADTFQKLQQVVQEY-GPGKPVWLGETGSAYNGG 300 (319)
T ss_dssp --HH-H---------HTS----HHHHHHHHHHHHH-----H-HH---EEEEEEEEESTT-
T ss_pred H-HH-H---------hcCh--hhhhHHHHHHHHHhhhhccc-CCCCCeEEeCcccccCCC
Confidence 0 00 0 0011 11122222333333333333 367999999999665554
No 19
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=82.23 E-value=14 Score=41.72 Aligned_cols=98 Identities=22% Similarity=0.186 Sum_probs=59.2
Q ss_pred ceEEecCCCC---CCCCHHH---HHHHHhhCCCCEEEecCC--ChHHHHHHhhCCCeEEEeeCCcc--------chhccC
Q 044365 28 LGVNYGLLGD---NLPTPDK---VIDLIKSNKINKVRIFEP--KQAVLQALKDSNLELALGTRNED--------LQSLAT 91 (339)
Q Consensus 28 ~Gi~Y~~~~~---~~~s~~~---v~~~l~~~~~~~VR~Y~~--d~~vl~A~~~~gikv~lGv~~~~--------~~~~a~ 91 (339)
.|+|+-.... ...++++ ++++||+.|++.||+-.. ++..+..|.+.||-|+--++... ......
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 4777643321 1345554 477899999999999753 46789999999998887543210 001111
Q ss_pred CH---HHHHHHHHHhhhhcCCCceEEEEEccccccCC
Q 044365 92 DP---SAATKFVQENVVAYSPGVKFSYITLGNEVIPG 125 (339)
Q Consensus 92 ~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~ 125 (339)
+. ++..+-+++.|........|..=++|||.-.+
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g 453 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG 453 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 21 12222344455544434568888899998544
No 20
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=78.60 E-value=7.1 Score=39.98 Aligned_cols=181 Identities=17% Similarity=0.107 Sum_probs=104.1
Q ss_pred HHHHHHhhhhcCCCceEEEEEccccccCC--CCHHHHHHHHHHHHHHHHhcCCC--cceeeeeeccccccccCCCCcccC
Q 044365 97 TKFVQENVVAYSPGVKFSYITLGNEVIPG--QYANFVFDAMQNMQNALKAANVN--VPVSTVVATSVLGSSYPPSNATFG 172 (339)
Q Consensus 97 ~~wv~~~v~~~~~~~~I~~I~VGNE~l~~--~~~~~l~~~i~~vk~~l~~~gl~--i~VsT~~~~~~~~~~~Pps~~~f~ 172 (339)
.+.+..-|.+|--...|.+-..-||.+.. .+...++...+.+.+-++..+=+ |.|+-+.+. |..--|++ +.
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~pyN-~r-- 197 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYAPYN-AR-- 197 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccCCcc-cc--
Confidence 55666666676545678888889997764 47899999999999999987654 555554432 32212332 22
Q ss_pred cchHHHHHHHHHHHHhcCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCC
Q 044365 173 QDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGG 252 (339)
Q Consensus 173 ~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~ 252 (339)
.+.|+-+.|+||+|.. +| ++. . +..|-. .-+|-. .. .
T Consensus 198 ---------------~~vDya~~hLY~hyd~--sl------~~r---~--------s~~yg~---~~l~i~----~~--~ 234 (587)
T COG3934 198 ---------------FYVDYAANHLYRHYDT--SL------VSR---V--------STVYGK---PYLDIP----TI--M 234 (587)
T ss_pred ---------------eeeccccchhhhhccC--Ch------hhe---e--------eeeecc---hhhccc----hh--c
Confidence 2568889999998763 22 110 0 001100 001100 11 1
Q ss_pred CCccEEEeeeccCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-----CCCCCceeeec
Q 044365 253 KDVKLVVSETGWPSAGVNLATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKP-----AGTEQNFGLFY 327 (339)
Q Consensus 253 ~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~-----~~~E~~wGlf~ 327 (339)
+-+||+.-|-|-|++=+. +|...|.-.....+. .. +.+--+..|+-|=+--.. ...|-.|||.+
T Consensus 235 g~~pV~leefGfsta~g~----e~s~ayfiw~~lal~-~g------gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIr 303 (587)
T COG3934 235 GWQPVNLEEFGFSTAFGQ----ENSPAYFIWIRLALD-TG------GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIR 303 (587)
T ss_pred ccceeeccccCCcccccc----cccchhhhhhhhHHh-hc------CCceEEEEecCCccCCCCCCCccccccceeeeec
Confidence 348999999999987543 333334333332221 11 112334455544311111 35788999999
Q ss_pred CCCceeecc
Q 044365 328 PDMKPVYPV 336 (339)
Q Consensus 328 ~d~~~k~~l 336 (339)
.|+.+|+..
T Consensus 304 adgpek~~a 312 (587)
T COG3934 304 ADGPEKIDA 312 (587)
T ss_pred CCCchhhhH
Confidence 999999864
No 21
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=76.56 E-value=13 Score=32.73 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=48.4
Q ss_pred HHHHHHhhC--CCeEEEeeCCccchh---ccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCC---CHHHHHHHHH
Q 044365 65 AVLQALKDS--NLELALGTRNEDLQS---LATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQ---YANFVFDAMQ 136 (339)
Q Consensus 65 ~vl~A~~~~--gikv~lGv~~~~~~~---~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~---~~~~l~~~i~ 136 (339)
.-++.+++. |+||++.+....... +..+.+...+.++ ++..+.....+++|-+==|..... ....+...|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345666665 999999887643222 3444444444333 233333233456666544543322 3688999999
Q ss_pred HHHHHHHhcCC
Q 044365 137 NMQNALKAANV 147 (339)
Q Consensus 137 ~vk~~l~~~gl 147 (339)
++|+.+.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 22
>PLN03059 beta-galactosidase; Provisional
Probab=70.43 E-value=68 Score=35.35 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCEEEecCC-----------C-------hHHHHHHhhCCCeEEEee---------------CCccch---
Q 044365 44 KVIDLIKSNKINKVRIFEP-----------K-------QAVLQALKDSNLELALGT---------------RNEDLQ--- 87 (339)
Q Consensus 44 ~v~~~l~~~~~~~VR~Y~~-----------d-------~~vl~A~~~~gikv~lGv---------------~~~~~~--- 87 (339)
+.++.+|..|++.|-+|-. | ..-++.+++.||.|+|=. |.-..+
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 3577788899999999943 1 346788889999999832 211111
Q ss_pred --h-ccCCHHHHHHHHHHhhh-----hc--CCCceEEEEEccccccCC--CCHHHHHHHHHHHHHHHHhcCCCcceeeee
Q 044365 88 --S-LATDPSAATKFVQENVV-----AY--SPGVKFSYITLGNEVIPG--QYANFVFDAMQNMQNALKAANVNVPVSTVV 155 (339)
Q Consensus 88 --~-~a~~~~~a~~wv~~~v~-----~~--~~~~~I~~I~VGNE~l~~--~~~~~l~~~i~~vk~~l~~~gl~i~VsT~~ 155 (339)
+ -..-.++..+|+..-+. ++ -.+..|..+=|-||-=.- ..-..=-.||+.+++++.+.|++||.-|.+
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECC
Confidence 1 11223456677664331 11 135679999999995210 111222679999999999999998877776
Q ss_pred e
Q 044365 156 A 156 (339)
Q Consensus 156 ~ 156 (339)
.
T Consensus 223 g 223 (840)
T PLN03059 223 Q 223 (840)
T ss_pred C
Confidence 4
No 23
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=69.51 E-value=5.3 Score=35.08 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 45 VIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
-.++|+..|+++||+.+.+|.-+.++.+.|++|.=-++
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 37899999999999999999999999999999875443
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=69.46 E-value=17 Score=26.17 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhCCCCEEEecCCC-----hHHHHHHhhCCCeEEEeeCC
Q 044365 39 LPTPDKVIDLIKSNKINKVRIFEPK-----QAVLQALKDSNLELALGTRN 83 (339)
Q Consensus 39 ~~s~~~v~~~l~~~~~~~VR~Y~~d-----~~vl~A~~~~gikv~lGv~~ 83 (339)
.-+++++++..+.+|++.|=+-+-+ +...+.+++.|++++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 4578899999999999999887765 45566677899999999864
No 25
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=68.64 E-value=34 Score=33.34 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=61.2
Q ss_pred HHHhh--CCCeEEEeeC--Cc---cchhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC-----CCHHHHHHHH
Q 044365 68 QALKD--SNLELALGTR--NE---DLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG-----QYANFVFDAM 135 (339)
Q Consensus 68 ~A~~~--~gikv~lGv~--~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-----~~~~~l~~~i 135 (339)
.++++ .++||++.|- .. ....+..+.+...+.++. +..+.....+.+|.+==|-... +....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 5899998773 32 223344555544444443 2222222335555554343221 2356789999
Q ss_pred HHHHHHHHhcCCCcceeeeeeccc--cccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 136 QNMQNALKAANVNVPVSTVVATSV--LGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 136 ~~vk~~l~~~gl~i~VsT~~~~~~--~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
+++|++|++.+-+..++.+..... +.. .| |+ +-|.+..|++.+-.|-|..
T Consensus 141 ~~lr~~l~~~~~~~~ls~av~~~~~~~~~-------~~--d~--------~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 141 KELREAFEPEAPRLLLTAAVSAGKETIDA-------AY--DI--------PEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHhhCcCeEEEEEecCChHHHhh-------cC--CH--------HHHhhhcceEEEecccCCC
Confidence 999999998721133343332111 100 01 11 1256777999998887754
No 26
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=65.60 E-value=12 Score=38.35 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCCEEEec---------C---CC-------hHHHHHHhhCCCeEEEeeCCccchh
Q 044365 43 DKVIDLIKSNKINKVRIF---------E---PK-------QAVLQALKDSNLELALGTRNEDLQS 88 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y---------~---~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 88 (339)
+|++++|++.|++.-|+= + .| .+++..|.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 578999999888887753 1 13 4789999999999999998656553
No 27
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=63.53 E-value=1.8e+02 Score=29.77 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred HHhhCCCCEEEecCC---C--------------------hHHHHHHhhCCCeEEEeeC--Cccchh-----c--------
Q 044365 48 LIKSNKINKVRIFEP---K--------------------QAVLQALKDSNLELALGTR--NEDLQS-----L-------- 89 (339)
Q Consensus 48 ~l~~~~~~~VR~Y~~---d--------------------~~vl~A~~~~gikv~lGv~--~~~~~~-----~-------- 89 (339)
+.+..||+.||+... | ..++..+.+.|++-++-+- ...+.+ +
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~p 127 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISP 127 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCC
Confidence 334579999999842 1 2578889999999766443 221110 0
Q ss_pred cCCHHHHHHHH----HHhhhhcCCCceEE--EEEccccccCC-----CCHHHHHHHHHHHHHHHHhcCCCcceeeeeecc
Q 044365 90 ATDPSAATKFV----QENVVAYSPGVKFS--YITLGNEVIPG-----QYANFVFDAMQNMQNALKAANVNVPVSTVVATS 158 (339)
Q Consensus 90 a~~~~~a~~wv----~~~v~~~~~~~~I~--~I~VGNE~l~~-----~~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~ 158 (339)
..+.++-..+| +.-+..| +...|. ..=|=||+=.. ....+-...-+.+.++||+..=.++|+-+-..
T Consensus 128 p~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~- 205 (486)
T PF01229_consen 128 PKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFA- 205 (486)
T ss_dssp BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEE-
T ss_pred cccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCcccc-
Confidence 12333333333 3222333 111111 44568886432 24556777778888888876544788876110
Q ss_pred ccccccCCCCcccCcchHHHHHHHHHHHHh---cCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhH
Q 044365 159 VLGSSYPPSNATFGQDASAVMEKIVSFLQQ---NQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTM 235 (339)
Q Consensus 159 ~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~---~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~ 235 (339)
+ .. ...+...++|+.+ .-|++..|.||+-......+.. . ... .....+
T Consensus 206 -~---------~~----~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~---~--------~~~----~~~~~~ 256 (486)
T PF01229_consen 206 -W---------AY----DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENM---Y--------ERI----EDSRRL 256 (486)
T ss_dssp -T---------T-----THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-E---E--------EEB------HHHH
T ss_pred -c---------cH----HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhH---H--------hhh----hhHHHH
Confidence 0 00 1345566666554 4588899999863211000000 0 000 001112
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCC----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEE----
Q 044365 236 FDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVN----LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIF---- 307 (339)
Q Consensus 236 ~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~~----~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F---- 307 (339)
++...+ +...+...+.+++++.++| |.+.-.+ .-|.-+|....++++..... .++.|-+
T Consensus 257 ~~~~~~-~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~s 323 (486)
T PF01229_consen 257 FPELKE-TRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTFS 323 (486)
T ss_dssp HHHHHH-HHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-SB
T ss_pred HHHHHH-HHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccchh
Confidence 222111 2223444567889999999 7776553 34445555555656665421 1233221
Q ss_pred EeecCCCCC-CCCCCceeeecCCCceeec
Q 044365 308 AMFNENQKP-AGTEQNFGLFYPDMKPVYP 335 (339)
Q Consensus 308 ~~fDe~wK~-~~~E~~wGlf~~d~~~k~~ 335 (339)
..|.|.-.+ ..+-..|||++.+|-+|..
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~~gI~KPa 352 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTKLGIPKPA 352 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEECCCEE-HH
T ss_pred hhhhccCCCCCceecchhhhhccCCCchH
Confidence 123332222 3466679999999987753
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.68 E-value=95 Score=27.11 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=51.9
Q ss_pred HHHHHhhCCCCEEEe----------cCC------------C--hHHHHHHhhCCCeEEEeeCCccchhccCCHHH---HH
Q 044365 45 VIDLIKSNKINKVRI----------FEP------------K--QAVLQALKDSNLELALGTRNEDLQSLATDPSA---AT 97 (339)
Q Consensus 45 v~~~l~~~~~~~VR~----------Y~~------------d--~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~---a~ 97 (339)
.++.|+..||+.|=+ |.+ | ..+|+++.+.||||++|+..+..-.-..+.+. ..
T Consensus 25 ~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~ 104 (166)
T PF14488_consen 25 EFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERN 104 (166)
T ss_pred HHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHH
Confidence 577788888877732 211 1 36789999999999999997521110111111 11
Q ss_pred HHHHHhh-hhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHh
Q 044365 98 KFVQENV-VAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKA 144 (339)
Q Consensus 98 ~wv~~~v-~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~ 144 (339)
+-+...+ ..|.....+.+--+-.|.=.. .....+..+.+.+.|++
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~~~--~~~~~~~~~~l~~~lk~ 150 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEIDDY--NWNAPERFALLGKYLKQ 150 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccCCc--ccchHHHHHHHHHHHHH
Confidence 1122222 223222345666666665322 23335555566666655
No 29
>PLN02998 beta-glucosidase
Probab=62.47 E-value=12 Score=38.68 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=43.3
Q ss_pred CCCccEEEeeeccCCCCC-CC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-CCCCCceeee
Q 044365 252 GKDVKLVVSETGWPSAGV-NL---ATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNENQKP-AGTEQNFGLF 326 (339)
Q Consensus 252 ~~~~~vvI~EtGWPs~G~-~~---as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~wK~-~~~E~~wGlf 326 (339)
+++.||+|||-|+....+ .+ -=++--+.+++.+.+.+. .|.+ -..+|.-++.| ++-- .+..+.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~-----V~GY~~WSl~D-nfEW~~Gy~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSD-----VKGYFQWSLMD-VFELFGGYERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchh-hhchhccccCccceE
Confidence 334479999999987532 11 112233445555555552 3432 24577778887 3322 4589999999
Q ss_pred cCCCc
Q 044365 327 YPDMK 331 (339)
Q Consensus 327 ~~d~~ 331 (339)
+-|..
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 98754
No 30
>PLN02814 beta-glucosidase
Probab=61.56 E-value=19 Score=37.27 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCCEEEe-------cC-----CC-------hHHHHHHhhCCCeEEEeeCCccchh
Q 044365 43 DKVIDLIKSNKINKVRI-------FE-----PK-------QAVLQALKDSNLELALGTRNEDLQS 88 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 88 (339)
+|++++||+.|++.-|+ += .| .+++..|.+.||+-++.+.=-+++.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 46799999988877765 21 13 4789999999999999998656553
No 31
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=60.90 E-value=82 Score=30.13 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=65.2
Q ss_pred hHHHHHHhh--CCCeEE--E--eeCCcc-chhccCCHHHHHHHHHHhhhhcCCCceEEEEEccc-cccC----CCCHHHH
Q 044365 64 QAVLQALKD--SNLELA--L--GTRNED-LQSLATDPSAATKFVQENVVAYSPGVKFSYITLGN-EVIP----GQYANFV 131 (339)
Q Consensus 64 ~~vl~A~~~--~gikv~--l--Gv~~~~-~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-E~l~----~~~~~~l 131 (339)
...+.++++ .++||+ + |=|... ...++++.+...+++++ +..+.....+.+|-+=- |-.. .+....+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 344556654 579998 4 335432 34466666665565553 33333233455554421 1111 1245678
Q ss_pred HHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccC-cchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 132 FDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFG-QDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 132 ~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~-~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
+..|+++|++|++.|+.+-++.+-.... .+....+. -| ++-|++..|++.+-.|=|..
T Consensus 133 ~~~l~el~~~l~~~~~~l~~~v~~~~~~-----~~~~~~~~~~d--------~~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 133 IQLVIHLGETLHSANLKLILVIPPPREK-----GNQNGLFTRKD--------FEKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEcCcccc-----ccccccccccC--------HHHHHhhccEEEEEeeccCC
Confidence 8999999999998876433333211100 00000111 01 12367778999888887654
No 32
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=59.80 E-value=23 Score=36.41 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCCEEEecC-------------CC-------hHHHHHHhhCCCeEEEeeCCccchh
Q 044365 43 DKVIDLIKSNKINKVRIFE-------------PK-------QAVLQALKDSNLELALGTRNEDLQS 88 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~-------------~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 88 (339)
+|++++|++.|++.-|+=- .| .+++..|.+.||+-+|.+.--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 5689999998887777521 13 3689999999999999998655553
No 33
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=59.63 E-value=31 Score=31.89 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCeEEEeeCCccc---hhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHH
Q 044365 65 AVLQALKDSNLELALGTRNEDL---QSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNA 141 (339)
Q Consensus 65 ~vl~A~~~~gikv~lGv~~~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~ 141 (339)
..++.+++.|+||++.|..... ..+..+.+...++++. +..+.....+.+|-+==|-.... .+.....|+++|++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~ 127 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHH
Confidence 4567777789999987765422 2233455544454443 33322222355555544543211 46677889999999
Q ss_pred HHhcCC
Q 044365 142 LKAANV 147 (339)
Q Consensus 142 l~~~gl 147 (339)
|++.|+
T Consensus 128 l~~~~~ 133 (253)
T cd06545 128 LKKEGK 133 (253)
T ss_pred HhhcCc
Confidence 988764
No 34
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=58.57 E-value=31 Score=35.45 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCCEEEe-------cC------CC-------hHHHHHHhhCCCeEEEeeCCccch
Q 044365 43 DKVIDLIKSNKINKVRI-------FE------PK-------QAVLQALKDSNLELALGTRNEDLQ 87 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~------~d-------~~vl~A~~~~gikv~lGv~~~~~~ 87 (339)
+|++++|++.|++.-|+ += .| .+++..|.+.||+-+|.+.--+++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 56899999988877764 31 13 368999999999999999865655
No 35
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=57.97 E-value=18 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=31.0
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEE
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELAL 79 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~l 79 (339)
.++|+..|+++||+.+.++.-+.++.+.|++|.=
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~ 167 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVE 167 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEE
Confidence 7899999999999999988788899999999973
No 36
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=57.77 E-value=18 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=30.4
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEE
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELA 78 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~ 78 (339)
.++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999987
No 37
>PLN02849 beta-glucosidase
Probab=56.91 E-value=17 Score=37.55 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred HHHHHHHhhCCCCEEEe-------cC-----CC-------hHHHHHHhhCCCeEEEeeCCccch
Q 044365 43 DKVIDLIKSNKINKVRI-------FE-----PK-------QAVLQALKDSNLELALGTRNEDLQ 87 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gikv~lGv~~~~~~ 87 (339)
+|++++|++.|++.-|+ +- .| .+++.++.+.||+-+|.+.=-+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 46799999988877764 31 13 368999999999999998865554
No 38
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=56.47 E-value=89 Score=29.86 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHHHhh--CCCeEEEeeCC--c--cchhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC--CCHHHHHHHHHHH
Q 044365 67 LQALKD--SNLELALGTRN--E--DLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG--QYANFVFDAMQNM 138 (339)
Q Consensus 67 l~A~~~--~gikv~lGv~~--~--~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~--~~~~~l~~~i~~v 138 (339)
+.++++ .++||++.|-. . ....+..+.+...++++ ++..+......++|-+==|.... .....+...|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 455555 48999997764 1 23334445444344333 23222222346677665444332 2456788899999
Q ss_pred HHHHHhc---CCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 139 QNALKAA---NVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 139 k~~l~~~---gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
|+.|.+. +-+..++.+.. |+..... ..-+.+..|++..|++.+-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v~---------~~~~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAVP---------AGPDKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEec---------CChHHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 9999864 11233343332 1111100 0011023467888999888777654
No 39
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=55.88 E-value=1.6e+02 Score=26.77 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=71.5
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCC-----------hHHHHHHhhCCCeEEEeeCCcc---ch--hccCCHHHHHHHHHHh
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPK-----------QAVLQALKDSNLELALGTRNED---LQ--SLATDPSAATKFVQEN 103 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d-----------~~vl~A~~~~gikv~lGv~~~~---~~--~~a~~~~~a~~wv~~~ 103 (339)
|++ ...+.+|+.|.+.|=.|-++ +.=++.+...|++++.= +... .. ..+.-...+.+.++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pI-yq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPI-YQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE-EECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 56777788888777777432 23477788899987652 2211 11 1233445566666655
Q ss_pred hhhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 044365 104 VVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN 148 (339)
Q Consensus 104 v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~ 148 (339)
..--.|...+.++.|-......+....++|+++-+.++|...|+.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcchhHHHHHHHHHHHHHHHHhcCCc
Confidence 544457778888888777654456789999999999999998864
No 40
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=49.03 E-value=44 Score=34.36 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCCCEEEe-------cC------CC-------hHHHHHHhhCCCeEEEeeCCccch
Q 044365 43 DKVIDLIKSNKINKVRI-------FE------PK-------QAVLQALKDSNLELALGTRNEDLQ 87 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~------~d-------~~vl~A~~~~gikv~lGv~~~~~~ 87 (339)
+|++++|++.|++.-|+ +- .| .+++.++.+.||+.+|.+.=-+++
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 57899999988777764 31 13 368999999999999999544443
No 41
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.69 E-value=56 Score=32.46 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=29.7
Q ss_pred hCCCCccEEEeeeccCCCCCC------CCCHHHHHHHHHHHHHHHhcC
Q 044365 250 VGGKDVKLVVSETGWPSAGVN------LATMDNAKAYVNNVIQRVSSG 291 (339)
Q Consensus 250 ~~~~~~~vvI~EtGWPs~G~~------~as~~na~~y~~~~~~~~~~~ 291 (339)
.|....+|+.+ |||.|.- ..|...++..+..+++.++..
T Consensus 143 ~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 143 SGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 45666788876 9999983 577777788888888888643
No 42
>PLN00196 alpha-amylase; Provisional
Probab=47.58 E-value=84 Score=31.84 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=36.6
Q ss_pred CccceEEecCCCCCCCCHH---HHHHHHhhCCCCEE-----------------EecCCC----------hHHHHHHhhCC
Q 044365 25 LGGLGVNYGLLGDNLPTPD---KVIDLIKSNKINKV-----------------RIFEPK----------QAVLQALKDSN 74 (339)
Q Consensus 25 ~~~~Gi~Y~~~~~~~~s~~---~v~~~l~~~~~~~V-----------------R~Y~~d----------~~vl~A~~~~g 74 (339)
.-..||.+.....+-..-. +-+.-|++.||+.| +.|+.| .++++++.+.|
T Consensus 26 v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~G 105 (428)
T PLN00196 26 VLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKG 105 (428)
T ss_pred EEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCC
Confidence 3356888754332211222 23456677777777 344443 35788889999
Q ss_pred CeEEE-eeCCc
Q 044365 75 LELAL-GTRNE 84 (339)
Q Consensus 75 ikv~l-Gv~~~ 84 (339)
|+|++ +|.|.
T Consensus 106 IkVilDvV~NH 116 (428)
T PLN00196 106 VQVIADIVINH 116 (428)
T ss_pred CEEEEEECccC
Confidence 99999 56664
No 43
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=47.00 E-value=34 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEee
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGT 81 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv 81 (339)
.++|+..|++++|+.+..+.-+.++.+.|++|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999998878889999999998433
No 44
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=46.81 E-value=62 Score=33.24 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCCEEEe-------cC------CC-------hHHHHHHhhCCCeEEEeeCCccchh
Q 044365 43 DKVIDLIKSNKINKVRI-------FE------PK-------QAVLQALKDSNLELALGTRNEDLQS 88 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~------~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 88 (339)
++++++|++.|++..|+ +- .| .+++.++.+.||+.++.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 56899999988877775 21 13 3689999999999999988666553
No 45
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=46.63 E-value=54 Score=34.06 Aligned_cols=78 Identities=13% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCCccEEEeeeccCCCCCC----------CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecC-CCCCCCC
Q 044365 251 GGKDVKLVVSETGWPSAGVN----------LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNE-NQKPAGT 319 (339)
Q Consensus 251 ~~~~~~vvI~EtGWPs~G~~----------~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe-~wK~~~~ 319 (339)
.+++.+|.|+|-|-+...+. ..=++..+.|++.+.+.+.. .|. +-..+|..++-|- .|. .+.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~-~Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWL-DGY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhh-cCc
Confidence 36899999999999987543 22234455666666666532 111 2346888888873 233 467
Q ss_pred CCceeeecC------CCceeec
Q 044365 320 EQNFGLFYP------DMKPVYP 335 (339)
Q Consensus 320 E~~wGlf~~------d~~~k~~ 335 (339)
.-.||||+- .|.||-+
T Consensus 477 ~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 477 KVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred ccccccEEEeCCCCCcCCchhH
Confidence 889999995 4556643
No 46
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=46.35 E-value=1.7e+02 Score=27.56 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHhhCCCCEEEecCCC-------hHHHHHHhh---CCCeEEEeeCCccchh---ccCCHHHHHHHHHHhh
Q 044365 38 NLPTPDKVIDLIKSNKINKVRIFEPK-------QAVLQALKD---SNLELALGTRNEDLQS---LATDPSAATKFVQENV 104 (339)
Q Consensus 38 ~~~s~~~v~~~l~~~~~~~VR~Y~~d-------~~vl~A~~~---~gikv~lGv~~~~~~~---~a~~~~~a~~wv~~~v 104 (339)
+.+++.+.++-|+..|++.|-+-++. ..+.+.+.+ .--++.+|-|.=.... -.++.+++...+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 37999999999999999999999874 244444432 3358999988622101 1123333333333332
Q ss_pred hhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC-cceeeeeeccccccccCCCCcccCcchHHHHHHHH
Q 044365 105 VAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN-VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIV 183 (339)
Q Consensus 105 ~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~-i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l 183 (339)
..-.++..+..+-=||+-. +. ..-..++..|++.|.. +-|+|.+. +| + +..++
T Consensus 136 ~~~~~~~a~vlmGHGt~h~----an---~~Y~~l~~~l~~~~~~~v~vgtvEG-------~P--------~----~~~vi 189 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPHP----AN---AAYSALQAMLKKHGYPNVFVGTVEG-------YP--------S----LEDVI 189 (262)
T ss_dssp -TT-TTEEEEEEE---SCH----HH---HHHHHHHHHHHCCT-TTEEEEETTS-------SS--------B----HHHHH
T ss_pred cccCCCCEEEEEeCCCCCC----cc---HHHHHHHHHHHhCCCCeEEEEEeCC-------CC--------C----HHHHH
Confidence 2111234444444455431 11 2345567888888875 99999873 34 1 23444
Q ss_pred HHHHhcCCcceecccCCCc
Q 044365 184 SFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 184 ~fL~~~~d~~~vNiyPyf~ 202 (339)
+.|.+. .+=-|.+.||.-
T Consensus 190 ~~L~~~-g~k~V~L~PlMl 207 (262)
T PF06180_consen 190 ARLKKK-GIKKVHLIPLML 207 (262)
T ss_dssp HHHHHH-T-SEEEEEEESS
T ss_pred HHHHhc-CCCeEEEEeccc
Confidence 455443 344689999986
No 47
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=44.29 E-value=77 Score=25.39 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhcccccccCccceEEecCCCCCCCCHHHHHHHHhhCCCCEEEe
Q 044365 5 VLIFFIVACLKTAAPAGTSSLGGLGVNYGLLGDNLPTPDKVIDLIKSNKINKVRI 59 (339)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~ 59 (339)
++++.+++++..|.|.-=.....+-|+-..-+.+.++.+++.+.|++.||..-++
T Consensus 11 lil~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 11 LILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred HHHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 4555566666666654434555666776655556777788888999888765433
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=57 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 43 DKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
..+.++|+.+|++.|=+...-+..+..|++.||+|+.+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999998889999999999999999977
No 49
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=43.41 E-value=2.8e+02 Score=27.78 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 127 YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 127 ~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
..+.++..|+++|++|...|+.+.++.+-... +...| | ++-|++..|++.+-.|=|+.
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~--------~~~~~--d--------~~~l~~~vD~inlMtYD~~g 224 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGLLLTLTVLPHVN--------STWYF--D--------VPAIANNVDFVNLATFDFLT 224 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCch--------hcccc--C--------HHHHhhcCCEEEEEEecccC
Confidence 45678889999999998877532222111000 00011 1 12367788999998887764
No 50
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.33 E-value=31 Score=34.30 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEE
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELAL 79 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~l 79 (339)
.++|+..|+++||+. .+|.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 779999999999999 678888889999999873
No 51
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=42.84 E-value=32 Score=34.14 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEee
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGT 81 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv 81 (339)
.++|+..|+++||+.+ +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8888899999999987433
No 52
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=41.60 E-value=29 Score=33.57 Aligned_cols=214 Identities=11% Similarity=0.107 Sum_probs=109.4
Q ss_pred HHHHHHhhCCCeEEE--eeCCccchh-ccC-----------CHHHHHHHHHHhhhhcCCC-ceEEEEEccccccCCC---
Q 044365 65 AVLQALKDSNLELAL--GTRNEDLQS-LAT-----------DPSAATKFVQENVVAYSPG-VKFSYITLGNEVIPGQ--- 126 (339)
Q Consensus 65 ~vl~A~~~~gikv~l--Gv~~~~~~~-~a~-----------~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNE~l~~~--- 126 (339)
.+++-+++.||+|-- =||-...+. +.. -.+.+.++|++-+..| +. ..|...=|=||++..+
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 577778889998763 456543221 111 1344556777655555 43 5899999999999742
Q ss_pred ------CH------HHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCc--
Q 044365 127 ------YA------NFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYP-- 192 (339)
Q Consensus 127 ------~~------~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~-- 192 (339)
.. +.+..+.+-.|++... ++.-.-+ .+++. +.-+..+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~----a~L~~ND-y~~~~-----------~~k~~~~~~lv~~l~~~gvpId 205 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN----AKLFYND-YNIES-----------PAKRDAYLNLVKDLKARGVPID 205 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT----SEEEEEE-SSTTS-----------THHHHHHHHHHHHHHHTTHCS-
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC----cEEEecc-ccccc-----------hHHHHHHHHHHHHHHhCCCccc
Confidence 12 3444455555555543 2222222 11111 11123455666777665443
Q ss_pred -ceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCC-
Q 044365 193 -LLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVSETGWPSAGVN- 270 (339)
Q Consensus 193 -~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~EtGWPs~G~~- 270 (339)
+++-.| .... +. .+.+..+|++...-+++|.|||--=.+...+
T Consensus 206 gIG~Q~H-------------------------~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 206 GIGLQSH-------------------------FDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp EEEEEEE-------------------------EETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred eechhhc-------------------------cCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 222222 1000 00 2233344555544569999999764444332
Q ss_pred -CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCC-CCCCCCCCceeeecCCCceeec
Q 044365 271 -LATMDNAKAYVNNVIQRVSSGKGTPLRPSIPIEAYIFAMFNEN-QKPAGTEQNFGLFYPDMKPVYP 335 (339)
Q Consensus 271 -~as~~na~~y~~~~~~~~~~~~gtp~~~~~~~~~~~F~~fDe~-wK~~~~E~~wGlf~~d~~~k~~ 335 (339)
....+.|+.+++.+++.+.+.. +..-..+.+..+.|.. |.....-.+=+||+.|.+||..
T Consensus 251 ~~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 251 DAEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HH
T ss_pred chHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHH
Confidence 3456778889999998875421 0112334444566643 5431112334799999999964
No 53
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.27 E-value=42 Score=33.65 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeCC
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRN 83 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~~ 83 (339)
.++|+..|+++||+.+.+|.-+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999998899999999999855543
No 54
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.45 E-value=69 Score=29.27 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=44.8
Q ss_pred CEEEecCCC-----hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEEEcccccc
Q 044365 55 NKVRIFEPK-----QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVI 123 (339)
Q Consensus 55 ~~VR~Y~~d-----~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 123 (339)
-.+++|++- ..+..+....-+.++|..-..+..++ +....|++ +|..+.+ ..+.-+.|||-.=
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~~-~I~e~a~-~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWIK-NIDEHAS-DDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHHH-HHHhhCC-CCCcEEEeecccc
Confidence 466778764 46788877777888888877666666 34455765 5666643 5889999999873
No 55
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=39.74 E-value=2.4e+02 Score=27.50 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=35.6
Q ss_pred ccceEEecCCCCCCCCHHHHHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 26 GGLGVNYGLLGDNLPTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 26 ~~~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
..+|||.-...+ .+..++.++.+...++..|=+..-+|...+.+++.|++|+.-|+
T Consensus 56 kPfGVnl~~~~~-~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~ 111 (320)
T cd04743 56 KPWGVGILGFVD-TELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP 111 (320)
T ss_pred CCeEEEEeccCC-CcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC
Confidence 346666643322 23345566766666677776655556556888888999887776
No 56
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.43 E-value=4.3e+02 Score=26.86 Aligned_cols=191 Identities=12% Similarity=0.140 Sum_probs=92.1
Q ss_pred CCCHHHHHH---HHhhCCCCEEEecCCC-----------hHHHHHHhh-CCC-eEEEeeCCccchhccCCHHHHHHHHHH
Q 044365 39 LPTPDKVID---LIKSNKINKVRIFEPK-----------QAVLQALKD-SNL-ELALGTRNEDLQSLATDPSAATKFVQE 102 (339)
Q Consensus 39 ~~s~~~v~~---~l~~~~~~~VR~Y~~d-----------~~vl~A~~~-~gi-kv~lGv~~~~~~~~a~~~~~a~~wv~~ 102 (339)
..++++|++ .+...|++.|.+.+-| ..+|..+.+ .|+ .+-++..+. ..+. ++....+++
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~~---~ell~~m~~ 256 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDFP---DHLLSLMAK 256 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccCC---HHHHHHHHh
Confidence 456778755 3445689999888653 234555443 232 233332211 1121 223333332
Q ss_pred hhhhcCCCceEEEEEccc-----cccCC---C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCc
Q 044365 103 NVVAYSPGVKFSYITLGN-----EVIPG---Q-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQ 173 (339)
Q Consensus 103 ~v~~~~~~~~I~~I~VGN-----E~l~~---~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~ 173 (339)
. +....++.+|= ++|-. . +.++...+++.+|++... +.++|..-. .|| |.-
T Consensus 257 ~------~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~----i~i~td~Iv-----GfP---gET-- 316 (449)
T PRK14332 257 N------PRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPD----VGITTDIIV-----GFP---NET-- 316 (449)
T ss_pred C------CCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEe-----eCC---CCC--
Confidence 1 12346777773 33321 2 688888999999886433 555554322 244 221
Q ss_pred chHHHHHHHHHHHHhcCCcceecccCCCccCCCCCCcCcccccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCC
Q 044365 174 DASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINADYALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGK 253 (339)
Q Consensus 174 ~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~p~~i~~~~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~ 253 (339)
..-+...++|+.+ ..+-.+++|+|-.....| -+..+..+ .+......++..+.+-+-.......++.-+.
T Consensus 317 --~edf~~tl~~v~~-l~~~~~~~f~ys~~~GT~-----a~~~~~~~--v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~ 386 (449)
T PRK14332 317 --EEEFEDTLAVVRE-VQFDMAFMFKYSEREGTM-----AKRKLPDN--VPEEVKSARLTKLVDLQTSISHEQNRARIGR 386 (449)
T ss_pred --HHHHHHHHHHHHh-CCCCEEEEEEecCCCCCh-----hHHhCcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345566676543 445567788775543222 11011110 1111222344444443333333333444345
Q ss_pred CccEEEeeecc
Q 044365 254 DVKLVVSETGW 264 (339)
Q Consensus 254 ~~~vvI~EtGW 264 (339)
..+|+|-+.+.
T Consensus 387 ~~~vlve~~~~ 397 (449)
T PRK14332 387 VYSILIENTSR 397 (449)
T ss_pred EEEEEEEeccC
Confidence 67888865544
No 57
>PRK08815 GTP cyclohydrolase; Provisional
Probab=39.37 E-value=46 Score=33.20 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=32.6
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
.++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999974444
No 58
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.32 E-value=48 Score=33.98 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCCEEEe-------cC-----CC-------hHHHHHHhhCCCeEEEeeCCccchh
Q 044365 43 DKVIDLIKSNKINKVRI-------FE-----PK-------QAVLQALKDSNLELALGTRNEDLQS 88 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 88 (339)
+|++++|++.|++.-|+ +- .| .+++..|.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 56799999988877765 31 12 3689999999999999998766553
No 59
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.97 E-value=46 Score=33.48 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=32.5
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
.++|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999888899999999974343
No 60
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.97 E-value=44 Score=32.85 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCEEEecCCC-hHHHHHHhhCCCeEE
Q 044365 45 VIDLIKSNKINKVRIFEPK-QAVLQALKDSNLELA 78 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~d-~~vl~A~~~~gikv~ 78 (339)
-.++|+..|+++||+.+.+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 61
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=38.45 E-value=31 Score=26.90 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHhhcccccccCccceE
Q 044365 1 MARLVLIFFIVACLKTAAPAGTSSLGGLGV 30 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 30 (339)
|+|++.++-+|++.++++.+++++...-.+
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRSV 30 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRSV 30 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccccccce
Confidence 889999988888888877666555443333
No 62
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=38.43 E-value=2.9e+02 Score=26.69 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=66.7
Q ss_pred HHHHHHHhhCCCCEEEecCC-----------C-------hHHHHHHhhCCCeEEE--eeCCcc------ch---------
Q 044365 43 DKVIDLIKSNKINKVRIFEP-----------K-------QAVLQALKDSNLELAL--GTRNED------LQ--------- 87 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~~-----------d-------~~vl~A~~~~gikv~l--Gv~~~~------~~--------- 87 (339)
.++++.+|..|++.|-+|-. | ...|+.+++.||.|+| |-|... ++
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 35688889999999999953 1 3568889999999887 544321 11
Q ss_pred ---hc-cCCHHHHHHHHHH---hhhhcC--CCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC-cceeeee
Q 044365 88 ---SL-ATDPSAATKFVQE---NVVAYS--PGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN-VPVSTVV 155 (339)
Q Consensus 88 ---~~-a~~~~~a~~wv~~---~v~~~~--~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~-i~VsT~~ 155 (339)
+. ..-.++..+|.+. .+.++. ....|..+=|-||.-.. ..-..+|+.+++..++.|.+ +...|.+
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~---~~~~~Y~~~l~~~~~~~g~~~~~~~t~d 181 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY---GTDRAYMEALKDAYRDWGIDPVLLYTTD 181 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT---SS-HHHHHHHHHHHHHTT-SSSBEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC---cccHhHHHHHHHHHHHhhCccceeeccC
Confidence 10 0123455666653 334443 24679999999997532 22246788999999999886 5444444
No 63
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=38.35 E-value=2.4e+02 Score=28.14 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCCEEEecCC----------C------------hHHHHHHhhCCCeEEEeeCCcc-----------chhc
Q 044365 43 DKVIDLIKSNKINKVRIFEP----------K------------QAVLQALKDSNLELALGTRNED-----------LQSL 89 (339)
Q Consensus 43 ~~v~~~l~~~~~~~VR~Y~~----------d------------~~vl~A~~~~gikv~lGv~~~~-----------~~~~ 89 (339)
+++...+++.||+.||+.-+ + .++++.+.+.||.|++-+-.-. ....
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56788899999999999743 2 2457777889999999643211 1111
Q ss_pred cC---C-HHHHHHHHHHhhhh-cCCCceEEEEEccccccC---CCCHHHH-HHHHHHHHHHHHhc
Q 044365 90 AT---D-PSAATKFVQENVVA-YSPGVKFSYITLGNEVIP---GQYANFV-FDAMQNMQNALKAA 145 (339)
Q Consensus 90 a~---~-~~~a~~wv~~~v~~-~~~~~~I~~I~VGNE~l~---~~~~~~l-~~~i~~vk~~l~~~ 145 (339)
.. + ......| +.+.. |-....|.++-+=||+.. ++....- -++...|++.+...
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 11 1 1222222 12333 323466777788899983 3322222 47777777666554
No 64
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=38.22 E-value=37 Score=32.52 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred CceEEEEEccccccC----CC------CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCc----ccCcch
Q 044365 110 GVKFSYITLGNEVIP----GQ------YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNA----TFGQDA 175 (339)
Q Consensus 110 ~~~I~~I~VGNE~l~----~~------~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~----~f~~~~ 175 (339)
...|+..++|+|-.- ++ .++.|...+.+||+.|-. ++|||.+-.|+.+.. |.|+.| .|+
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~---~~kitYAADWsEY~~-~~p~dg~gd~~f~--- 89 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGP---GTKITYAADWSEYFG-YQPADGSGDVYFH--- 89 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCC---CceEEEeccCHHhcC-cCCCCCCCccccc---
Confidence 467899999999652 11 257888999999998832 389999999998865 445444 343
Q ss_pred HHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 176 SAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 176 ~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
|.|+. -..+.|+++|+-|.=.+
T Consensus 90 ---LDpLW--a~~~IDfIGID~Y~PLS 111 (299)
T PF13547_consen 90 ---LDPLW--ADPNIDFIGIDNYFPLS 111 (299)
T ss_pred ---Ccccc--cCCcCCEEEeecccccC
Confidence 23432 23577999998875443
No 65
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=38.21 E-value=1.1e+02 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=24.0
Q ss_pred hCCCCccEEEeeeccCCCCCC------CCCHHHHHHHHHHHHHHHh
Q 044365 250 VGGKDVKLVVSETGWPSAGVN------LATMDNAKAYVNNVIQRVS 289 (339)
Q Consensus 250 ~~~~~~~vvI~EtGWPs~G~~------~as~~na~~y~~~~~~~~~ 289 (339)
.++++.+|+ -.|||.|.. ..+...+...+..+++.+.
T Consensus 45 ~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 45 LGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred hCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455554444 469999984 3455566666777777764
No 66
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=37.93 E-value=49 Score=34.68 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
.++|+..|+++||+.+.+|.=+.++.+.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999885444
No 67
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=37.76 E-value=49 Score=33.85 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=32.7
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeC
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
.++|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999888999999999974444
No 68
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=37.45 E-value=82 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHhhCCCCEEEec--CCC---hHHHHHHhhCCCeEEE
Q 044365 45 VIDLIKSNKINKVRIF--EPK---QAVLQALKDSNLELAL 79 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y--~~d---~~vl~A~~~~gikv~l 79 (339)
+.+.++++|++.|+++ +.. ..+|++++..|+++.-
T Consensus 52 ~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 52 AAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4566777899999998 343 5799999999998654
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.12 E-value=86 Score=26.37 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=32.9
Q ss_pred CHHHHHHHHhhCCCCEEEecCC---------------------C--hHHHHHHhhCCCeEEEeeCCc
Q 044365 41 TPDKVIDLIKSNKINKVRIFEP---------------------K--QAVLQALKDSNLELALGTRNE 84 (339)
Q Consensus 41 s~~~v~~~l~~~~~~~VR~Y~~---------------------d--~~vl~A~~~~gikv~lGv~~~ 84 (339)
++++.++.+|..++++|-+|.- | .++++|+++.||+|++=+-..
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4677788888877888877642 1 367899999999998876644
No 70
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.87 E-value=3.4e+02 Score=24.97 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHhhCCCCEEEecCCC---hHHHHHHhh--CCCeEEE--eeCCccchhccCCHHHHHHHHHHhhhhcCCC
Q 044365 38 NLPTPDKVIDLIKSNKINKVRIFEPK---QAVLQALKD--SNLELAL--GTRNEDLQSLATDPSAATKFVQENVVAYSPG 110 (339)
Q Consensus 38 ~~~s~~~v~~~l~~~~~~~VR~Y~~d---~~vl~A~~~--~gikv~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 110 (339)
.|.||+|+.+.++ .|.+.|++|=++ +.-+++++. .+++++- ||.. +.+.+..|++.
T Consensus 118 G~~TpsEi~~A~~-~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~--------~~~n~~~yl~a-------- 180 (222)
T PRK07114 118 GCGSLSEIGYAEE-LGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEP--------TEENLKKWFGA-------- 180 (222)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCc--------chhcHHHHHhC--------
Confidence 3789999999888 778999999654 677888875 4666664 3332 11334567652
Q ss_pred ceEEEEEccccccC
Q 044365 111 VKFSYITLGNEVIP 124 (339)
Q Consensus 111 ~~I~~I~VGNE~l~ 124 (339)
.+..+.+|+..+.
T Consensus 181 -Ga~avg~Gs~L~~ 193 (222)
T PRK07114 181 -GVTCVGMGSKLIP 193 (222)
T ss_pred -CCEEEEEChhhcC
Confidence 2557777877654
No 71
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=36.52 E-value=3.7e+02 Score=29.70 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=57.3
Q ss_pred ceEEecCCCCC---CCCHH---HHHHHHhhCCCCEEEecCC--ChHHHHHHhhCCCeEEEeeCCcc--chhccCCHHHHH
Q 044365 28 LGVNYGLLGDN---LPTPD---KVIDLIKSNKINKVRIFEP--KQAVLQALKDSNLELALGTRNED--LQSLATDPSAAT 97 (339)
Q Consensus 28 ~Gi~Y~~~~~~---~~s~~---~v~~~l~~~~~~~VR~Y~~--d~~vl~A~~~~gikv~lGv~~~~--~~~~a~~~~~a~ 97 (339)
.|+|.-+...- +...+ +.+++||+.|++.||+..- ++.-++-|...||=|+--..... .+.-..-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 47776543322 44444 4578889999999999853 46778888889998876544321 111111122223
Q ss_pred HHHHHhhhhcCCCceEEEEEccccccCC
Q 044365 98 KFVQENVVAYSPGVKFSYITLGNEVIPG 125 (339)
Q Consensus 98 ~wv~~~v~~~~~~~~I~~I~VGNE~l~~ 125 (339)
.=+++.|...-..-.|.-=++|||.-.+
T Consensus 383 ~~i~~mver~knHPSIiiWs~gNE~~~g 410 (808)
T COG3250 383 EEVRRMVERDRNHPSIIIWSLGNESGHG 410 (808)
T ss_pred HHHHHHHHhccCCCcEEEEeccccccCc
Confidence 3344444433222457778999997544
No 72
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=36.05 E-value=1e+02 Score=23.53 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=31.9
Q ss_pred CceEEEEEcccc-ccC-----C----C-CHHHHHHHHHHHHHHHHhcCCCcceeeee
Q 044365 110 GVKFSYITLGNE-VIP-----G----Q-YANFVFDAMQNMQNALKAANVNVPVSTVV 155 (339)
Q Consensus 110 ~~~I~~I~VGNE-~l~-----~----~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~ 155 (339)
...|.+-=|+|| ... . + ..+.+.+.|+++-+.+++..=+.|||+..
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 578999999999 551 0 1 36889999999999999876557776653
No 73
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.98 E-value=3.4e+02 Score=25.50 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHHHhhCCCCEEEecCCC------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEEEc
Q 044365 45 VIDLIKSNKINKVRIFEPK------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYITL 118 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~d------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~V 118 (339)
+++.....|++.||++..- ...++.+++.|+++...+-..+.. ..+.+....+++... .. + +..|.+
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~--~~~~~~~~~~~~~~~-~~-G---a~~i~l 168 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSP--VHTLEYYVKLAKELE-DM-G---ADSICI 168 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--CCCHHHHHHHHHHHH-Hc-C---CCEEEE
Confidence 4555566789999999653 234566778999988766321111 124455555554432 22 2 222332
Q ss_pred cccccCC-CCHHHHHHHHHHHHHHH
Q 044365 119 GNEVIPG-QYANFVFDAMQNMQNAL 142 (339)
Q Consensus 119 GNE~l~~-~~~~~l~~~i~~vk~~l 142 (339)
..-+ | -.|.++-..++.+|+.+
T Consensus 169 ~DT~--G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 169 KDMA--GLLTPYAAYELVKALKKEV 191 (275)
T ss_pred cCCC--CCCCHHHHHHHHHHHHHhC
Confidence 2211 3 26888888888888755
No 74
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=34.38 E-value=30 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCCcceeeeeec
Q 044365 133 DAMQNMQNALKAANVNVPVSTVVAT 157 (339)
Q Consensus 133 ~~i~~vk~~l~~~gl~i~VsT~~~~ 157 (339)
..|++||+.|-+..+++||..-+..
T Consensus 104 Kvm~~ikavLgaTKiDLPVDINDPY 128 (238)
T PF02084_consen 104 KVMEDIKAVLGATKIDLPVDINDPY 128 (238)
T ss_pred HHHHHHHHHhcccccccccccCChh
Confidence 4699999999998888888776643
No 75
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.73 E-value=99 Score=29.19 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=36.6
Q ss_pred eEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCCcc-eeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcC
Q 044365 112 KFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVNVP-VSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQ 190 (339)
Q Consensus 112 ~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~i~-VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~ 190 (339)
...-|+||+|.|.|+..+.=.+ -+-+.|...|+++. ++|.- |+. ..|...++.+.+..
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~---~la~~L~~~G~~v~~~~~Vg-----------------D~~-~~I~~~l~~a~~r~ 61 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAA---FLADELTELGVDLARITTVG-----------------DNP-DRIVEALREASERA 61 (255)
T ss_pred eEEEEEEccceecCceecchHH---HHHHHHHhcCceEEEEEecC-----------------CCH-HHHHHHHHHHHhCC
Confidence 4567999999999842222222 23356777887733 33321 111 34566667777777
Q ss_pred Cccee
Q 044365 191 YPLLA 195 (339)
Q Consensus 191 d~~~v 195 (339)
|++.+
T Consensus 62 D~vI~ 66 (255)
T COG1058 62 DVVIT 66 (255)
T ss_pred CEEEE
Confidence 77643
No 76
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.54 E-value=3.1e+02 Score=29.18 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHH----HHhhCCCCEEEecCCC------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHH
Q 044365 42 PDKVID----LIKSNKINKVRIFEPK------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQE 102 (339)
Q Consensus 42 ~~~v~~----~l~~~~~~~VR~Y~~d------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~ 102 (339)
+++|++ ..+.+|++.+|+|++- ...++++++.|..+...+-....+ ....+...++.+.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp--~~t~e~~~~~ak~ 162 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP--VHTLDNFLELGKK 162 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC--CCCHHHHHHHHHH
Confidence 456644 4456899999999862 235777888998777664443222 1234444444443
No 77
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.56 E-value=58 Score=33.03 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC-ccee
Q 044365 127 YANFVFDAMQNMQNALKAANVN-VPVS 152 (339)
Q Consensus 127 ~~~~l~~~i~~vk~~l~~~gl~-i~Vs 152 (339)
+.+..+.-++.+.+.|.++|+. +.++
T Consensus 261 ~~~~~~~~~~~~~~~L~~~Gy~~~~~~ 287 (453)
T PRK13347 261 DAEERLRQARAVADRLLAAGYVPIGLD 287 (453)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 3566777888899999999985 5443
No 78
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.45 E-value=1e+02 Score=25.40 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHhhCCCCEEEec--C--------CC---hHHHHHHhhCCCeEEE
Q 044365 44 KVIDLIKSNKINKVRIF--E--------PK---QAVLQALKDSNLELAL 79 (339)
Q Consensus 44 ~v~~~l~~~~~~~VR~Y--~--------~d---~~vl~A~~~~gikv~l 79 (339)
++.+..+++|++.|+++ + +. +.+|++++..||+|..
T Consensus 54 ~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 54 RAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 45666778899988887 3 33 5799999999999754
No 79
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.23 E-value=2.7e+02 Score=23.29 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=27.3
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCC-------hHHHHHHhhC---CCeEEEe
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPK-------QAVLQALKDS---NLELALG 80 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d-------~~vl~A~~~~---gikv~lG 80 (339)
-|++++++..++.+.+.|=+-+.+ +.+++++++. .++|++|
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 566777777666667777776654 4566666654 3577777
No 80
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.92 E-value=2.6e+02 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHhhCC-CCEEEecC---------CChHHHHHHhhCCCeEEEeeCCc
Q 044365 46 IDLIKSNK-INKVRIFE---------PKQAVLQALKDSNLELALGTRNE 84 (339)
Q Consensus 46 ~~~l~~~~-~~~VR~Y~---------~d~~vl~A~~~~gikv~lGv~~~ 84 (339)
++.+++.+ ++.||+.+ .+++.++.++++|.++++++--.
T Consensus 159 l~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 159 MARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCC
Confidence 34444433 45667754 13567777777777777776643
No 81
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=30.29 E-value=3.1e+02 Score=25.96 Aligned_cols=93 Identities=23% Similarity=0.285 Sum_probs=55.3
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCC
Q 044365 88 SLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPS 167 (339)
Q Consensus 88 ~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps 167 (339)
.+.++.+...+++++ +..+.....+.+|.+-=|.+.....+.+..-|+++|++|++.|+.+.|+.+ |.
T Consensus 81 ~~l~~~~~R~~fi~~-iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~-----------~~ 148 (298)
T cd06549 81 RLLADPSARAKFIAN-IAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVP-----------AD 148 (298)
T ss_pred HHhcCHHHHHHHHHH-HHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEec-----------CC
Confidence 355566655555554 333333344667777667654445677888999999999987754333322 11
Q ss_pred CcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 168 NATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 168 ~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
...| |+ +-|.+.+|++.+-.|=+..
T Consensus 149 ~~~~--d~--------~~l~~~~D~v~lMtYD~~~ 173 (298)
T cd06549 149 EADW--NL--------KALARNADKLILMAYDEHY 173 (298)
T ss_pred CCCC--CH--------HHHHHhCCEEEEEEeccCC
Confidence 1111 21 1256788999888886653
No 82
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=29.91 E-value=1.9e+02 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEe
Q 044365 39 LPTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALG 80 (339)
Q Consensus 39 ~~s~~~v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lG 80 (339)
+.....+.++|...+++.|=.-..-+.....+...||+|+.+
T Consensus 39 ~~~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 39 GGGGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp SCHSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred cccchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 445566888888899999988888899999999999999999
No 83
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=29.82 E-value=1.3e+02 Score=25.14 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHhhCCCCEEEecCCC-----hHHHHHHhhCCCeEEEeeCC
Q 044365 37 DNLPTPDKVIDLIKSNKINKVRIFEPK-----QAVLQALKDSNLELALGTRN 83 (339)
Q Consensus 37 ~~~~s~~~v~~~l~~~~~~~VR~Y~~d-----~~vl~A~~~~gikv~lGv~~ 83 (339)
+...+++++++..++.|++.|=+-+=+ +...+.+++.||++++|+-.
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 335689999999999999988777543 45667777899999999986
No 84
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.50 E-value=6.6e+02 Score=26.08 Aligned_cols=137 Identities=10% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCCHHHHHHH---HhhCCCCEEEecCCC---------------hHHHHHHhhCCCe-EEEeeCCccchhccCCHHHHHHH
Q 044365 39 LPTPDKVIDL---IKSNKINKVRIFEPK---------------QAVLQALKDSNLE-LALGTRNEDLQSLATDPSAATKF 99 (339)
Q Consensus 39 ~~s~~~v~~~---l~~~~~~~VR~Y~~d---------------~~vl~A~~~~gik-v~lGv~~~~~~~~a~~~~~a~~w 99 (339)
..++++|++- +...|++.|.+.+-| ..+++.+.+.+++ +-++... ...+. .+....
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~---deli~~ 314 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFD---DHLIEV 314 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCC---HHHHHH
Confidence 5678888653 445688888886532 2466666665542 3222211 11121 122222
Q ss_pred HHHhhhhcCCCceEEEEEcccccc----CC----C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcc
Q 044365 100 VQENVVAYSPGVKFSYITLGNEVI----PG----Q-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNAT 170 (339)
Q Consensus 100 v~~~v~~~~~~~~I~~I~VGNE~l----~~----~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~ 170 (339)
+++ . +..+.++.+|=|-. .. . +.++.+.+++.+|+.+-. +.++|..-. .|| |.
T Consensus 315 m~~----~--g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~----i~i~tdiIv-----GfP---gE 376 (509)
T PRK14327 315 LAK----G--GNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPN----VALTTDIIV-----GFP---NE 376 (509)
T ss_pred HHh----c--CCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC----cEEeeeEEE-----eCC---CC
Confidence 222 1 12345677764433 31 2 678888888888886322 666665432 244 22
Q ss_pred cCcchHHHHHHHHHHHHhcCCcceecccCCCcc
Q 044365 171 FGQDASAVMEKIVSFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 171 f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 203 (339)
-.+-....++|+.+ ..+-.+++|+|-..
T Consensus 377 ----T~edf~~Tl~~v~~-l~~d~~~~f~yspr 404 (509)
T PRK14327 377 ----TDEQFEETLSLYRE-VGFDHAYTFIYSPR 404 (509)
T ss_pred ----CHHHHHHHHHHHHH-cCCCeEEEeeeeCC
Confidence 12334555666544 34445677766443
No 85
>PHA02754 hypothetical protein; Provisional
Probab=29.42 E-value=49 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhcCC--C-cceeee
Q 044365 130 FVFDAMQNMQNALKAANV--N-VPVSTV 154 (339)
Q Consensus 130 ~l~~~i~~vk~~l~~~gl--~-i~VsT~ 154 (339)
..-.+|+++|..|..+|+ + |++-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 445789999999999997 4 665543
No 86
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=29.11 E-value=5.8e+02 Score=25.30 Aligned_cols=137 Identities=5% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCHHHHHHHH---hhCCCCEEEecC-------CC-------hHHHHHHhhC-CCe-EEEeeCCccchhccCCHHHHHHH
Q 044365 39 LPTPDKVIDLI---KSNKINKVRIFE-------PK-------QAVLQALKDS-NLE-LALGTRNEDLQSLATDPSAATKF 99 (339)
Q Consensus 39 ~~s~~~v~~~l---~~~~~~~VR~Y~-------~d-------~~vl~A~~~~-gik-v~lGv~~~~~~~~a~~~~~a~~w 99 (339)
..++++|++-+ ...|++.|.+.+ .| ..+++++.+. |++ +-++-- ....+ + .+....
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~--~p~~~--~-~ell~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSI--DPEDI--D-EELLEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCC--ChhhC--C-HHHHHH
Confidence 67888886644 456899998754 22 2566666543 442 444321 11112 1 223333
Q ss_pred HHHhhhhcCCCceEEEEEccccccC----C-----CCHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcc
Q 044365 100 VQENVVAYSPGVKFSYITLGNEVIP----G-----QYANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNAT 170 (339)
Q Consensus 100 v~~~v~~~~~~~~I~~I~VGNE~l~----~-----~~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~ 170 (339)
++++ ......+.+|=|-.. . .+.++...+++.+|+.. .| +.+++..-.+ +| |.
T Consensus 241 m~~~------~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g--i~i~~~~IvG-----~P---gE 302 (414)
T TIGR01579 241 IASE------KRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD--YAFGTDIIVG-----FP---GE 302 (414)
T ss_pred HHhc------CccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC--CeeeeeEEEE-----CC---CC
Confidence 3321 111345666644432 1 25777888888887743 23 5666654332 34 11
Q ss_pred cCcchHHHHHHHHHHHHhcCCcceecccCCCcc
Q 044365 171 FGQDASAVMEKIVSFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 171 f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 203 (339)
-.+-+...++|+.+. .+-.+++|||-..
T Consensus 303 ----T~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 303 ----SEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred ----CHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 124456667776553 4556777777544
No 87
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.05 E-value=4.4e+02 Score=23.92 Aligned_cols=88 Identities=9% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHhhCCCCEEEecCCC---hHHHHHHhh--CCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCce
Q 044365 38 NLPTPDKVIDLIKSNKINKVRIFEPK---QAVLQALKD--SNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVK 112 (339)
Q Consensus 38 ~~~s~~~v~~~l~~~~~~~VR~Y~~d---~~vl~A~~~--~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~ 112 (339)
.|.|++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. .+.+ +.+.+..|++ ..
T Consensus 115 G~~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~---------aG 176 (213)
T PRK06552 115 GCMTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFA---------AG 176 (213)
T ss_pred CcCCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHH---------CC
Confidence 3789999988875 789999999655 566777764 3466553 1222 2344556665 23
Q ss_pred EEEEEccccccCC---CCHHHHHHHHHHHHHHHH
Q 044365 113 FSYITLGNEVIPG---QYANFVFDAMQNMQNALK 143 (339)
Q Consensus 113 I~~I~VGNE~l~~---~~~~~l~~~i~~vk~~l~ 143 (339)
+..+.||+..+.. ...+.+-...+++++.++
T Consensus 177 a~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 177 ADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 5688888877543 244666666666666554
No 88
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.91 E-value=4.4e+02 Score=23.88 Aligned_cols=69 Identities=13% Similarity=0.298 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHhhCCCCEEEecCCC----hHHHHHHhh--CCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCc
Q 044365 38 NLPTPDKVIDLIKSNKINKVRIFEPK----QAVLQALKD--SNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGV 111 (339)
Q Consensus 38 ~~~s~~~v~~~l~~~~~~~VR~Y~~d----~~vl~A~~~--~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 111 (339)
.|.||+|+.+.++ .|.+.||+|=++ +.-+++++. .++++|- .... +.+.+..|++.
T Consensus 107 G~~TptEi~~A~~-~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~p---tGGV-----~~~N~~~~l~a--------- 168 (204)
T TIGR01182 107 GVATPSEIMLALE-LGITALKLFPAEVSGGVKMLKALAGPFPQVRFCP---TGGI-----NLANVRDYLAA--------- 168 (204)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECCchhcCCHHHHHHHhccCCCCcEEe---cCCC-----CHHHHHHHHhC---------
Confidence 4899999999888 778999999655 677888875 5677773 2222 22456677763
Q ss_pred eEEEEEccccccC
Q 044365 112 KFSYITLGNEVIP 124 (339)
Q Consensus 112 ~I~~I~VGNE~l~ 124 (339)
-...+.+|+..+.
T Consensus 169 Ga~~vg~Gs~L~~ 181 (204)
T TIGR01182 169 PNVACGGGSWLVP 181 (204)
T ss_pred CCEEEEEChhhcC
Confidence 3457778887664
No 89
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=28.90 E-value=4e+02 Score=25.23 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhCCCeEEEee--CCcc---chhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC-CCHHHHHHHHHHHHHHHH-
Q 044365 71 KDSNLELALGT--RNED---LQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG-QYANFVFDAMQNMQNALK- 143 (339)
Q Consensus 71 ~~~gikv~lGv--~~~~---~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-~~~~~l~~~i~~vk~~l~- 143 (339)
++.++|+++.+ |..+ ...++++.+...+.++ ++..+.....+.+|-+==|-... +....++..|+++|++|.
T Consensus 63 ~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~-siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 63 KNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFIN-SSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred hCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHH-HHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHH
Q ss_pred ------hcCCCcceeeeeeccc----cccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCccCCCCCCcCcc
Q 044365 144 ------AANVNVPVSTVVATSV----LGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPYFAEPTNINAD 213 (339)
Q Consensus 144 ------~~gl~i~VsT~~~~~~----~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~p~~i~~~ 213 (339)
..++-+.+..+-.... ....|+ ++-|++..|++.+=.|=|...-..+
T Consensus 142 ~~~~~~~~~~~ls~av~~~~~~~~~~~~~~yd-----------------~~~l~~~vD~i~vMtYD~~g~~~~~------ 198 (299)
T cd02879 142 EARSSGRPPLLLTAAVYFSPILFLSDDSVSYP-----------------IEAINKNLDWVNVMAYDYYGSWESN------ 198 (299)
T ss_pred HhhccCCCcEEEEeecccchhhccccccccCC-----------------HHHHHhhCCEEEEEeecccCCCCCC------
Q ss_pred cccccCCccccccCCCccchhHHHHHHHHHHHHHHHhCCCCccEEEe
Q 044365 214 YALGNANVAKGVTDGSIHYNTMFDAMIDALYVAMEKVGGKDVKLVVS 260 (339)
Q Consensus 214 ~a~f~~~~~~~~~~~~~~y~n~~da~~da~~~a~~~~~~~~~~vvI~ 260 (339)
.+...+.+ |..--+-.++.......+.|.+..||+++
T Consensus 199 ---------~~~~~a~l-~~~~~~~~~~~~v~~~~~~g~p~~KlvlG 235 (299)
T cd02879 199 ---------TTGPAAAL-YDPNSNVSTDYGIKSWIKAGVPAKKLVLG 235 (299)
T ss_pred ---------CCCCCCcC-CCCCCCCCHHHHHHHHHHcCCCHHHEEEE
No 90
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=28.83 E-value=2.6e+02 Score=22.81 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=60.7
Q ss_pred HHHhhCCCCEEEecCCC----------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEE
Q 044365 47 DLIKSNKINKVRIFEPK----------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYI 116 (339)
Q Consensus 47 ~~l~~~~~~~VR~Y~~d----------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I 116 (339)
+-|.++|.+.|-+-+.. .....++++.|++...-.......... .......|+++. ..++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--------~pdai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL--------RPDAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC--------SSSEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC--------CCcEE
Confidence 34555778888777632 235677888998754433322211111 112223366433 22488
Q ss_pred EccccccCCCCHHHHHHHHHHHHHHHHhcCCC----cceeeeeeccccccccCCCCcccCcchHHHHHHHHHH
Q 044365 117 TLGNEVIPGQYANFVFDAMQNMQNALKAANVN----VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSF 185 (339)
Q Consensus 117 ~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~----i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~f 185 (339)
+++|+.+ ...+..+|.+.|+. +.|-+-+..... ....|...++..+.....+..++.
T Consensus 73 i~~~~~~-----------a~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p~it~i~~~~~~~g~~a~~~ 133 (160)
T PF13377_consen 73 ICSNDRL-----------ALGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSPPITTIDQDPREMGREAVEL 133 (160)
T ss_dssp EESSHHH-----------HHHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSSTSEEEEE-HHHHHHHHHHH
T ss_pred EEcCHHH-----------HHHHHHHHHHcCCcccccccEEEecCcHHH-HHHcCCCceecCCHHHHHHHHHHH
Confidence 8888874 33444666777773 566665543333 223345666666665444444333
No 91
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=28.61 E-value=1.4e+02 Score=30.71 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHhhCCCeEEEeeCCccchhccC-------CHHHHHHHHHHhhhhcCCCceEEEEEccccccCCCCHHHHHHHHHH
Q 044365 65 AVLQALKDSNLELALGTRNEDLQSLAT-------DPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQYANFVFDAMQN 137 (339)
Q Consensus 65 ~vl~A~~~~gikv~lGv~~~~~~~~a~-------~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~ 137 (339)
.++.+++..|+.+++..+ .+++|-. +...+.+|+. +.+++|.+++|.-.|.+|-+.+..|++
T Consensus 261 ~ii~aaraag~pvi~atq--mLeSM~~~p~PTRAe~~dv~~~v~---------~G~d~v~ls~eta~G~yP~~~v~~m~~ 329 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQ--MLDSMIKNPRPTRAEVSDVANAIL---------DGTDAVMLSGETAKGKYPVEAVKMMAK 329 (473)
T ss_pred HHHHHHHHcCCCEEEECh--hhhhhhcCCCCCcccHHHHHHHHH---------cCCCEEEEcchhhcCCCHHHHHHHHHH
Confidence 466677778888776554 2444433 5566555554 346799999999888888888888888
Q ss_pred HHHHHHh
Q 044365 138 MQNALKA 144 (339)
Q Consensus 138 vk~~l~~ 144 (339)
|-.....
T Consensus 330 I~~~~E~ 336 (473)
T TIGR01064 330 IAKEAEK 336 (473)
T ss_pred HHHHHHh
Confidence 7665543
No 92
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.37 E-value=6.5e+02 Score=25.68 Aligned_cols=132 Identities=13% Similarity=0.201 Sum_probs=73.3
Q ss_pred ccceEEecCCCCCCCC----HHHHHHHHhh-CCCCEEEecCCC-----hHHHHHHhhC-CCeEEEeeCCccchhccCCHH
Q 044365 26 GGLGVNYGLLGDNLPT----PDKVIDLIKS-NKINKVRIFEPK-----QAVLQALKDS-NLELALGTRNEDLQSLATDPS 94 (339)
Q Consensus 26 ~~~Gi~Y~~~~~~~~s----~~~v~~~l~~-~~~~~VR~Y~~d-----~~vl~A~~~~-gikv~lGv~~~~~~~~a~~~~ 94 (339)
.-+|.|-+.||.|.+. -.+.++.+.+ .|+.+||+=+++ .+++++++++ .+-=.|-+|. ++-.+
T Consensus 194 ~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsGsd--- 267 (437)
T COG0621 194 VLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSGSD--- 267 (437)
T ss_pred EEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccCCH---
Confidence 3467777777777642 3344443333 467788877665 3677777754 4433344442 22110
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEccccccCCC-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCc
Q 044365 95 AATKFVQENVVAYSPGVKFSYITLGNEVIPGQ-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQ 173 (339)
Q Consensus 95 ~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~ 173 (339)
. .++ . +.+. +.++.+..++.+|+.+.. +-++|..-. .|| |.-.+
T Consensus 268 ~---ILk-~-------------------M~R~yt~e~~~~~i~k~R~~~Pd----~~i~tDiIV-----GFP---gETee 312 (437)
T COG0621 268 R---ILK-R-------------------MKRGYTVEEYLEIIEKLRAARPD----IAISTDIIV-----GFP---GETEE 312 (437)
T ss_pred H---HHH-H-------------------hCCCcCHHHHHHHHHHHHHhCCC----ceEeccEEE-----ECC---CCCHH
Confidence 0 011 0 1122 678888899999988776 556665432 255 32222
Q ss_pred chHHHHHHHHHHHHhcCCcceecccCCCcc
Q 044365 174 DASAVMEKIVSFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 174 ~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 203 (339)
| ....+++ .+..-+=.+|+++|=..
T Consensus 313 d----Fe~tl~l-v~e~~fd~~~~F~YSpR 337 (437)
T COG0621 313 D----FEETLDL-VEEVRFDRLHVFKYSPR 337 (437)
T ss_pred H----HHHHHHH-HHHhCCCEEeeeecCCC
Confidence 2 2344443 45667888999998554
No 93
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=27.98 E-value=1.2e+02 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=35.6
Q ss_pred HHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeCCcc
Q 044365 46 IDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNED 85 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~~~~ 85 (339)
.++|+..|+++||+-+.+|.=..++.+.||+|.=-+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 6789999999999999999889999999999988887643
No 94
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.55 E-value=4.4e+02 Score=26.89 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHhhCCCCEEEecCCC------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHH
Q 044365 45 VIDLIKSNKINKVRIFEPK------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQE 102 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~d------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~ 102 (339)
.++.....|++.||+|++- ...++.+++.|+.+.+.+-..+.+ . .+.+...+..+.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p-~-~~~~~~~~~a~~ 162 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSP-V-HTIDYFVKLAKE 162 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCC-C-CCHHHHHHHHHH
Confidence 3455566899999999752 246677788998876655433322 1 234444444443
No 95
>PRK07198 hypothetical protein; Validated
Probab=27.38 E-value=60 Score=32.64 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHhhCCCCEE-EecCCChHHHHHHhhCCCeEEEeeC
Q 044365 46 IDLIKSNKINKV-RIFEPKQAVLQALKDSNLELALGTR 82 (339)
Q Consensus 46 ~~~l~~~~~~~V-R~Y~~d~~vl~A~~~~gikv~lGv~ 82 (339)
.++|+.+|+++| |+.+.++.-+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 789999999999 9999999888999999999985554
No 96
>CHL00041 rps11 ribosomal protein S11
Probab=27.37 E-value=1.5e+02 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=26.5
Q ss_pred HHHHHhhCCCCEEEec--CCC---hHHHHHHhhCCCeEEE
Q 044365 45 VIDLIKSNKINKVRIF--EPK---QAVLQALKDSNLELAL 79 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y--~~d---~~vl~A~~~~gikv~l 79 (339)
+.+.+++.|++.|+++ +.. ..++++++..|++|.-
T Consensus 65 ~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~ 104 (116)
T CHL00041 65 AIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSS 104 (116)
T ss_pred HHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4556667899988888 332 5789999999998653
No 97
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.09 E-value=1.1e+02 Score=24.72 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=27.4
Q ss_pred HHHHHhhCCCCEEEec--CCC---hHHHHHHhhCCCeEEEe
Q 044365 45 VIDLIKSNKINKVRIF--EPK---QAVLQALKDSNLELALG 80 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y--~~d---~~vl~A~~~~gikv~lG 80 (339)
+.+.++..|++.|+++ +.. ..+++++..+|++|..=
T Consensus 52 ~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I 92 (110)
T PF00411_consen 52 IAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSI 92 (110)
T ss_dssp HHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEE
Confidence 4566677899999888 333 57999999999987653
No 98
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.86 E-value=5.3e+02 Score=24.11 Aligned_cols=87 Identities=9% Similarity=0.125 Sum_probs=48.0
Q ss_pred HHHHhhCCCCEEEecCCC------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCceEEEEEcc
Q 044365 46 IDLIKSNKINKVRIFEPK------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGVKFSYITLG 119 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VG 119 (339)
++.....+++.||++... ...++.+++.|++|.+++..... .+.+...++++... .+ +.+ .|.+.
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~~~-~~-g~~---~i~l~ 158 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLELVN-EI-KPD---VFYIV 158 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHHHH-hC-CCC---EEEEe
Confidence 344445678888888543 23455566788888887764321 34555555555432 22 222 22222
Q ss_pred ccccCC-CCHHHHHHHHHHHHHHHH
Q 044365 120 NEVIPG-QYANFVFDAMQNMQNALK 143 (339)
Q Consensus 120 NE~l~~-~~~~~l~~~i~~vk~~l~ 143 (339)
.-. | -+|.++-..++.+|+.+.
T Consensus 159 DT~--G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 159 DSF--GSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred cCC--CCCCHHHHHHHHHHHHHhcC
Confidence 211 2 257777777777776553
No 99
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.53 E-value=1.6e+02 Score=24.94 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCCEEEec--C--------CC---hHHHHHHhhCCCeEEE
Q 044365 44 KVIDLIKSNKINKVRIF--E--------PK---QAVLQALKDSNLELAL 79 (339)
Q Consensus 44 ~v~~~l~~~~~~~VR~Y--~--------~d---~~vl~A~~~~gikv~l 79 (339)
++.+.++.+|++.|+++ + +. ..+|++++..|++|..
T Consensus 61 ~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 61 KAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 35667778899998887 4 33 4799999999999754
No 100
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.30 E-value=6.7e+02 Score=25.10 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCcc
Q 044365 127 YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 127 ~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 203 (339)
+.++.+.+++.+|+.... +.++|..-. .|| |. -.+-+...++|+.+ ..+-.+++|+|-..
T Consensus 263 t~~~~~~~v~~lr~~~p~----i~i~~d~Iv-----GfP---gE----Teedf~~Tl~fl~~-l~~~~~~~f~~sp~ 322 (420)
T PRK14339 263 TKEWFLNRAEKLRALVPE----VSISTDIIV-----GFP---GE----SDKDFEDTMDVLEK-VRFEQIFSFKYSPR 322 (420)
T ss_pred CHHHHHHHHHHHHHHCCC----CEEEEEEEE-----ECC---CC----CHHHHHHHHHHHHh-cCCCEEeeEecCCC
Confidence 577888888888875432 566664322 244 21 12445666777654 34445677775443
No 101
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=25.86 E-value=1.7e+02 Score=29.71 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=56.5
Q ss_pred ChHHHHHHhhCCCeEEEeeCCcc--chhc--------cCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCCCHHHHH
Q 044365 63 KQAVLQALKDSNLELALGTRNED--LQSL--------ATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQYANFVF 132 (339)
Q Consensus 63 d~~vl~A~~~~gikv~lGv~~~~--~~~~--------a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~l~ 132 (339)
+.++++..+.-+++.++++-|.. ...+ -+++.+-.+.+. ++..-....-++++.++=|.+....-+..=
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~-~ii~~l~~~Gyrgv~iDfE~v~~~DR~~yt 227 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLIN-NIITLLDARGYRGVNIDFENVGPGDRELYT 227 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHH-HHHHHHHhcCcccEEechhhCCHHHHHHHH
Confidence 46788999999999999999876 2222 112211112222 221111234577888888888654556666
Q ss_pred HHHHHHHHHHHhcCCCcceeeee
Q 044365 133 DAMQNMQNALKAANVNVPVSTVV 155 (339)
Q Consensus 133 ~~i~~vk~~l~~~gl~i~VsT~~ 155 (339)
-.|++++.+|.+.|+ .++++.
T Consensus 228 ~flR~~r~~l~~~G~--~~siAv 248 (423)
T COG3858 228 DFLRQVRDALHSGGY--TVSIAV 248 (423)
T ss_pred HHHHHHHHHhccCCe--EEEEEe
Confidence 789999999999995 444443
No 102
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=25.66 E-value=4e+02 Score=22.32 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCEEEecCCC-------------hHHHHHHhhCCCeEEEeeCCcc-------chhccCCHHHHHHHHHHhh
Q 044365 45 VIDLIKSNKINKVRIFEPK-------------QAVLQALKDSNLELALGTRNED-------LQSLATDPSAATKFVQENV 104 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y~~d-------------~~vl~A~~~~gikv~lGv~~~~-------~~~~a~~~~~a~~wv~~~v 104 (339)
.++.+++.|++.|=.|-++ +.=++.+...|++|+.= |.+. ....++....+.+-++.+.
T Consensus 9 ~~~~l~~aGy~~VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~i~pI-yq~~~~~~~~~~~~~~~G~~dA~~A~~~A~ 87 (136)
T PF08924_consen 9 SAQALKAAGYRAVGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLRIFPI-YQGGGRETSDFTYGYAQGVADARDAVAAAR 87 (136)
T ss_dssp HHHHHHHT---SEEEESS-BTTTB-----B--HHHHHHHHHTT-EEEEE-E--------S-B--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEcCCCCCCcccccCCCCHHHHHHHHHCCCEEEEE-EecccccccccccHHHHHHHHHHHHHHHHH
Confidence 3556666777666556332 13356677788876542 3221 1111133455666666555
Q ss_pred hhcCCCceEEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 044365 105 VAYSPGVKFSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN 148 (339)
Q Consensus 105 ~~~~~~~~I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~ 148 (339)
.--.|...+.+..|--.+...+..+.++|+++-+++.|...|+.
T Consensus 88 ~lG~p~gt~IYfavD~d~~~~~~~~~i~~Y~~g~~~~l~~~gY~ 131 (136)
T PF08924_consen 88 ALGFPAGTPIYFAVDYDATDAECDSAILPYFRGWNSALGASGYR 131 (136)
T ss_dssp HTT--SS-EEEEE--TS-B-HH-------HHHHHHHHHGGGT-E
T ss_pred HcCCCCCCEEEEEeecCCCchhhhhHHHHHHHHHHHHHhhCCCc
Confidence 44346778888888733321235789999999999999988763
No 103
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.59 E-value=38 Score=18.73 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=10.2
Q ss_pred ChhhHHHHHHHHHHHh
Q 044365 1 MARLVLIFFIVACLKT 16 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (339)
|-++++++++|+++.+
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 4466777777776544
No 104
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.33 E-value=1.9e+02 Score=27.25 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=59.5
Q ss_pred hhCCCeEEEeeCCc-----cchhccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCCC----CHHHHHHHHHHHHHH
Q 044365 71 KDSNLELALGTRNE-----DLQSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPGQ----YANFVFDAMQNMQNA 141 (339)
Q Consensus 71 ~~~gikv~lGv~~~-----~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~----~~~~l~~~i~~vk~~ 141 (339)
+..|+||++.|-.. ....+..+.+...+.++ ++..+.....+++|-+==|..... ........|+++|+.
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~-~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFIN-NIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHH-HHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHHHHH-hhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 35699998866543 12223333322222222 222222122466777644544322 578889999999999
Q ss_pred HHhc-----CCCcceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 142 LKAA-----NVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 142 l~~~-----gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
|++. + ..+|.+....... .... -+..|.+..|++.+-.|-|..
T Consensus 149 l~~~~~~~~~--~~ls~a~p~~~~~--------------~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKG--YILSVAVPPSPDY--------------YDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHST--SEEEEEEECSHHH--------------HTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccce--eEEeecccccccc--------------cccc--ccccccccccccccccccCCC
Confidence 9884 4 3444443221110 0111 223467888999998887766
No 105
>PLN03030 cationic peroxidase; Provisional
Probab=25.32 E-value=62 Score=31.64 Aligned_cols=19 Identities=16% Similarity=0.534 Sum_probs=15.0
Q ss_pred eEEecCCCCCCCCHHHHHH
Q 044365 29 GVNYGLLGDNLPTPDKVID 47 (339)
Q Consensus 29 Gi~Y~~~~~~~~s~~~v~~ 47 (339)
++.|+=|...||..++|+.
T Consensus 24 ~L~~~fY~~sCP~aE~iV~ 42 (324)
T PLN03030 24 GTRVGFYSTTCPQAESIVR 42 (324)
T ss_pred cCccchhhCcCCCHHHHHH
Confidence 3777778888999998754
No 106
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.94 E-value=1e+02 Score=31.29 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHHH----HHhhCCCCEEEecCC--C----hHHHHHHhhCCCeEEEeeCC
Q 044365 43 DKVID----LIKSNKINKVRIFEP--K----QAVLQALKDSNLELALGTRN 83 (339)
Q Consensus 43 ~~v~~----~l~~~~~~~VR~Y~~--d----~~vl~A~~~~gikv~lGv~~ 83 (339)
++|++ ....+|++.+|+||+ | ...+++++++|..+...+-.
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEe
Confidence 55554 334589999999998 3 35788888998766655543
No 107
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=24.82 E-value=1.2e+02 Score=26.93 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=37.1
Q ss_pred ccCccceEEecCC---CCCCCCHHHHHHHHhhCCCCEEEecCCC--------hHHHHHHhhCCCeEEEeeCCcc
Q 044365 23 SSLGGLGVNYGLL---GDNLPTPDKVIDLIKSNKINKVRIFEPK--------QAVLQALKDSNLELALGTRNED 85 (339)
Q Consensus 23 ~~~~~~Gi~Y~~~---~~~~~s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~A~~~~gikv~lGv~~~~ 85 (339)
...+++|+|+-|= .+-+.+-+++++-||+.|++.|=+.-.+ ++..++.+..||.+. -.|+.|
T Consensus 38 ~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~-h~PI~D 110 (168)
T PF05706_consen 38 NCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWH-HLPIPD 110 (168)
T ss_dssp T-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEE-E----T
T ss_pred CCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEE-ecCccC
Confidence 4567899999864 2336777888999999999888766443 567788888999764 555543
No 108
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=24.73 E-value=1.9e+02 Score=27.94 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHhhCCCCEEEecCCCh-HHHHHHhhCCCeEEEeeCCccc
Q 044365 46 IDLIKSNKINKVRIFEPKQ-AVLQALKDSNLELALGTRNEDL 86 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~d~-~vl~A~~~~gikv~lGv~~~~~ 86 (339)
-++|+..|++. .+-..|. -..+++++..+.++++.|....
T Consensus 51 ~~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~ 91 (302)
T COG2113 51 KKILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTT 91 (302)
T ss_pred HHHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCC
Confidence 34678888755 6666664 4568888888999999997543
No 109
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.14 E-value=5.1e+02 Score=23.68 Aligned_cols=69 Identities=7% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCC--------hHHHHHHh-hCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCC
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPK--------QAVLQALK-DSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPG 110 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~A~~-~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 110 (339)
.+|-++++.+.+.|++.+-+.|.| ..+++.+. ..+++|++|=-... .+.++.++..
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs-------~edv~~~l~~-------- 96 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRD-------DESLEAALAT-------- 96 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCC-------HHHHHHHHHC--------
Confidence 378899999999999999999876 24676665 46899999744322 2344444431
Q ss_pred ceEEEEEccccccC
Q 044365 111 VKFSYITLGNEVIP 124 (339)
Q Consensus 111 ~~I~~I~VGNE~l~ 124 (339)
-...+.+|.+.+.
T Consensus 97 -Ga~kvviGs~~l~ 109 (241)
T PRK14024 97 -GCARVNIGTAALE 109 (241)
T ss_pred -CCCEEEECchHhC
Confidence 2336788999874
No 110
>PRK05309 30S ribosomal protein S11; Validated
Probab=23.85 E-value=1.9e+02 Score=24.24 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCEEEec--CCC---hHHHHHHhhCCCeEEE
Q 044365 45 VIDLIKSNKINKVRIF--EPK---QAVLQALKDSNLELAL 79 (339)
Q Consensus 45 v~~~l~~~~~~~VR~Y--~~d---~~vl~A~~~~gikv~l 79 (339)
+.+.+.+.|++.|+++ +.. ..+|.++...|++|.-
T Consensus 69 ~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~ 108 (128)
T PRK05309 69 AAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTS 108 (128)
T ss_pred HHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4556677899999999 333 5799999999998653
No 111
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.82 E-value=6.1e+02 Score=24.80 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCCCHHHHHH---HHhhCCCCEEEecCCC-------hHHHHHHhhCCC-eEEEeeCCccchhccCCHHHHHHHHHHhhhh
Q 044365 38 NLPTPDKVID---LIKSNKINKVRIFEPK-------QAVLQALKDSNL-ELALGTRNEDLQSLATDPSAATKFVQENVVA 106 (339)
Q Consensus 38 ~~~s~~~v~~---~l~~~~~~~VR~Y~~d-------~~vl~A~~~~gi-kv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~ 106 (339)
+..|++++.. .....|+++||+-+-. ..++..+++.++ .|.++-.-.-++..+ ..|-..
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a------~~Lk~A---- 110 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRA------ADLKEA---- 110 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHH------HHHHHc----
Confidence 4668998754 4445899999999865 356777776654 355553322233222 222221
Q ss_pred cCCCceEEEEEccccccCC-CCHHHHHHHHHHHHHHHHhcCCC-cceeeeeeccccccccCCCCcccCcchHHHHHHHHH
Q 044365 107 YSPGVKFSYITLGNEVIPG-QYANFVFDAMQNMQNALKAANVN-VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVS 184 (339)
Q Consensus 107 ~~~~~~I~~I~VGNE~l~~-~~~~~l~~~i~~vk~~l~~~gl~-i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~ 184 (339)
.+...+|..=+.=.|.+-. .-...+-..|+-|.+++ ++|+. |||.|+.--+ +++ .-+-++++
T Consensus 111 Gl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~-~~Gl~pVKlN~Vv~kg------------vNd---~ei~~l~e 174 (322)
T COG2896 111 GLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAV-EAGLTPVKLNTVLMKG------------VND---DEIEDLLE 174 (322)
T ss_pred CCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCceEEEEEEecC------------CCH---HHHHHHHH
Confidence 1111222221111221110 01112444455555554 46886 9999987322 111 35677888
Q ss_pred HHHhcCCcceecccCCCccC
Q 044365 185 FLQQNQYPLLANVYTCFPYF 204 (339)
Q Consensus 185 fL~~~~d~~~vNiyPyf~~~ 204 (339)
|..+.+- .++|-+++
T Consensus 175 ~~~~~~~-----~lrfIE~m 189 (322)
T COG2896 175 FAKERGA-----QLRFIELM 189 (322)
T ss_pred HHhhcCC-----ceEEEEEe
Confidence 7665443 44555543
No 112
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.78 E-value=7.5e+02 Score=24.82 Aligned_cols=136 Identities=13% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCHHHHHHHH---hhCCCCEEEecCCC--------------hHHHHHHhh-CCCe-EEEeeCCccchhccCCHHHHHHH
Q 044365 39 LPTPDKVIDLI---KSNKINKVRIFEPK--------------QAVLQALKD-SNLE-LALGTRNEDLQSLATDPSAATKF 99 (339)
Q Consensus 39 ~~s~~~v~~~l---~~~~~~~VR~Y~~d--------------~~vl~A~~~-~gik-v~lGv~~~~~~~~a~~~~~a~~w 99 (339)
..++++|++.+ ...|++.|.+.+.| ..+++.+.+ .|+. +-++.-. ...+. ++....
T Consensus 175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--P~~i~---~ell~~ 249 (439)
T PRK14328 175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSH--PKDLS---DDLIEA 249 (439)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCC--hhhcC---HHHHHH
Confidence 45678876543 34688888886543 245555554 3432 3222111 11121 222333
Q ss_pred HHHhhhhcCCCceEEEEEcc----ccccCC----C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcc
Q 044365 100 VQENVVAYSPGVKFSYITLG----NEVIPG----Q-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNAT 170 (339)
Q Consensus 100 v~~~v~~~~~~~~I~~I~VG----NE~l~~----~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~ 170 (339)
++.. + .....+.+| ++.+.. . +.++...+++.+|+.+.. +.++|..-. .+| |.
T Consensus 250 l~~~-----~-~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~----i~i~~d~Iv-----G~P---gE 311 (439)
T PRK14328 250 IADC-----D-KVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPD----VAITTDIIV-----GFP---GE 311 (439)
T ss_pred HHhC-----C-CcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEE-----ECC---CC
Confidence 3321 1 124567777 333321 2 678888888888876322 555554432 244 11
Q ss_pred cCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 171 FGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 171 f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
-.+-+...++|+.+. .+-.+++++|-.
T Consensus 312 ----T~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 312 ----TEEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred ----CHHHHHHHHHHHHhc-CCCcccceEecC
Confidence 123455666776543 455667777654
No 113
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.35 E-value=2.2e+02 Score=25.80 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=37.8
Q ss_pred ceEEecCCCCCCCCHHHHHHHHhhCCCCEEEecCC---C-hHHHHHHhhCCCeEEE
Q 044365 28 LGVNYGLLGDNLPTPDKVIDLIKSNKINKVRIFEP---K-QAVLQALKDSNLELAL 79 (339)
Q Consensus 28 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~---d-~~vl~A~~~~gikv~l 79 (339)
++||++..... .+-++.++.+++.|++.|-++.. + ..+.+.++++|+++..
T Consensus 3 ~~~~~~~~~~~-~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTE-LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcC-CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 46776644433 46889999999999999999743 2 3567778899999764
No 114
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.51 E-value=7.9e+02 Score=24.60 Aligned_cols=74 Identities=9% Similarity=0.153 Sum_probs=42.9
Q ss_pred EEEEEccccccCC--------C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeeccccccccCCCCcccCcchHHHHHHHH
Q 044365 113 FSYITLGNEVIPG--------Q-YANFVFDAMQNMQNALKAANVNVPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIV 183 (339)
Q Consensus 113 I~~I~VGNE~l~~--------~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l 183 (339)
..++.+|=|-... . +.++...+++.+|+.+. ++.|+|..-. .+| | +-.+.+...+
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~----~i~i~~d~Iv-----GfP---g----ET~edf~~tl 313 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVP----DASISSDIIV-----GFP---T----ETEEDFMETV 313 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC----CCEEEEEEEE-----ECC---C----CCHHHHHHHH
Confidence 4577777555431 2 57778888888887532 2667776533 244 1 1224456677
Q ss_pred HHHHhcCCcceecccCCCcc
Q 044365 184 SFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 184 ~fL~~~~d~~~vNiyPyf~~ 203 (339)
+|+.+. .+-.+|+++|-..
T Consensus 314 ~fi~~~-~~~~~~~~~~sp~ 332 (434)
T PRK14330 314 DLVEKA-QFERLNLAIYSPR 332 (434)
T ss_pred HHHHhc-CCCEEeeeeccCC
Confidence 776553 4556677766543
No 115
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.37 E-value=2.8e+02 Score=25.34 Aligned_cols=82 Identities=9% Similarity=0.139 Sum_probs=47.1
Q ss_pred hHHHHHHhhCCCeEEEeeCCccch-h--ccCCHHHHHHHHHHhhhhcCCCceEEEEEccccccCC-------CCHHHHHH
Q 044365 64 QAVLQALKDSNLELALGTRNEDLQ-S--LATDPSAATKFVQENVVAYSPGVKFSYITLGNEVIPG-------QYANFVFD 133 (339)
Q Consensus 64 ~~vl~A~~~~gikv~lGv~~~~~~-~--~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-------~~~~~l~~ 133 (339)
.+-++.++..|+||++++-..... . ...+.+...++++ ++..+...-.+++|-+-=|.... ...+..+.
T Consensus 54 ~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~-~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~ 132 (255)
T cd06542 54 ETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAK-AIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVR 132 (255)
T ss_pred HHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHH-HHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHH
Confidence 345677788999999877643222 1 1234444444444 23222222346677665554321 14577889
Q ss_pred HHHHHHHHHHhcC
Q 044365 134 AMQNMQNALKAAN 146 (339)
Q Consensus 134 ~i~~vk~~l~~~g 146 (339)
.|+++|+.+...+
T Consensus 133 lv~~Lr~~~~~~~ 145 (255)
T cd06542 133 LIKELRKYMGPTD 145 (255)
T ss_pred HHHHHHHHhCcCC
Confidence 9999999886433
No 116
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.32 E-value=4.7e+02 Score=23.93 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=55.9
Q ss_pred CHHHHHHHHhhCCCCEEEecCC-----------C----hHHHHHHhhCCCeEEE-eeCCc--------cchhccCCHHHH
Q 044365 41 TPDKVIDLIKSNKINKVRIFEP-----------K----QAVLQALKDSNLELAL-GTRNE--------DLQSLATDPSAA 96 (339)
Q Consensus 41 s~~~v~~~l~~~~~~~VR~Y~~-----------d----~~vl~A~~~~gikv~l-Gv~~~--------~~~~~a~~~~~a 96 (339)
+.++.++.+++.|++.|-+.-. + ..+.+.++++||+|.. +.... +.....+..+..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 6788999999999999988521 1 2355667889998763 22110 111111122333
Q ss_pred HHHHHHhhhhcCCCceEEEEEccccccCC----CCHHHHHHHHHHHHHHHHhcCCC
Q 044365 97 TKFVQENVVAYSPGVKFSYITLGNEVIPG----QYANFVFDAMQNMQNALKAANVN 148 (339)
Q Consensus 97 ~~wv~~~v~~~~~~~~I~~I~VGNE~l~~----~~~~~l~~~i~~vk~~l~~~gl~ 148 (339)
.++++.. ...+...|. + .|-..... .....++..|+.+-...++.|+.
T Consensus 97 ~~~i~~a--~~lG~~~v~-~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 97 KKAIRLA--QDLGIRTIQ-L-AGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHH--HHhCCCEEE-E-CCcccccccccHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4444432 222323332 1 12211111 13567778888887777777854
No 117
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.13 E-value=2.1e+02 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhhCCCCEEEecCCC----hHHHHHHhh--CCCeEEE
Q 044365 39 LPTPDKVIDLIKSNKINKVRIFEPK----QAVLQALKD--SNLELAL 79 (339)
Q Consensus 39 ~~s~~~v~~~l~~~~~~~VR~Y~~d----~~vl~A~~~--~gikv~l 79 (339)
|.||+|+.+.++ .|.+.||+|=++ +.-++++++ .++++|.
T Consensus 108 ~~TptEi~~A~~-~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~p 153 (196)
T PF01081_consen 108 VMTPTEIMQALE-AGADIVKLFPAGALGGPSYIKALRGPFPDLPFMP 153 (196)
T ss_dssp ESSHHHHHHHHH-TT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEE
T ss_pred cCCHHHHHHHHH-CCCCEEEEecchhcCcHHHHHHHhccCCCCeEEE
Confidence 789999999887 779999999765 688999886 4677764
No 118
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.01 E-value=7.5e+02 Score=24.17 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=51.5
Q ss_pred CChHHHHHHhhCCCeEEEeeCCcc------chhccCC-----HHHHHHHHHHhhhhcCCCceEEEEEccccccC-C-CCH
Q 044365 62 PKQAVLQALKDSNLELALGTRNED------LQSLATD-----PSAATKFVQENVVAYSPGVKFSYITLGNEVIP-G-QYA 128 (339)
Q Consensus 62 ~d~~vl~A~~~~gikv~lGv~~~~------~~~~a~~-----~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~-~-~~~ 128 (339)
+.+.++.++.+.|++|+-.+-.+. +..+-++ ..-+.+.|+ +..++ .++++.+=-|... . ...
T Consensus 47 Pp~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~--lak~y---GfDGw~iN~E~~~~~~~~~ 121 (339)
T cd06547 47 PPADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVE--VAKYY---GFDGWLINIETELGDAEKA 121 (339)
T ss_pred CCcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHH--HHHHh---CCCceEeeeeccCCcHHHH
Confidence 447899999999999987775332 1111111 122233222 34443 3667777777765 3 468
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 044365 129 NFVFDAMQNMQNALKAAN 146 (339)
Q Consensus 129 ~~l~~~i~~vk~~l~~~g 146 (339)
+.|..-|+.+++.+++.+
T Consensus 122 ~~l~~F~~~L~~~~~~~~ 139 (339)
T cd06547 122 KRLIAFLRYLKAKLHENV 139 (339)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999998754
No 119
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.98 E-value=1.3e+02 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC--cceee
Q 044365 126 QYANFVFDAMQNMQNALKAANVN--VPVST 153 (339)
Q Consensus 126 ~~~~~l~~~i~~vk~~l~~~gl~--i~VsT 153 (339)
+...++-.+++|++..|+++|.+ +++++
T Consensus 30 ~~~~Q~~qal~Ni~~vL~~aG~~dVvk~~i 59 (118)
T cd06156 30 GITLQAVLSLQHLERVAKAMNVQWVLAAVC 59 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 56789999999999999999974 55544
No 120
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.86 E-value=1.9e+02 Score=21.37 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhcCCCceEEEEEccccccCC---C--CHHHHHHHHHHHHHHHHh
Q 044365 93 PSAATKFVQENVVAYSPGVKFSYITLGNEVIPG---Q--YANFVFDAMQNMQNALKA 144 (339)
Q Consensus 93 ~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~---~--~~~~l~~~i~~vk~~l~~ 144 (339)
.+-+..|+++||. .|++.++. + ....|+|+|+..++.++.
T Consensus 10 L~iLi~WLedNi~------------~es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 10 LEILIAWLEDNID------------CESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHHHcccC------------CCCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 4567789998752 35566663 2 468899999999988875
No 121
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.56 E-value=4.1e+02 Score=24.24 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=46.3
Q ss_pred CHHHHHHHHhhCCCCEEEecCCC--------hHHHHHHh-hCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCCc
Q 044365 41 TPDKVIDLIKSNKINKVRIFEPK--------QAVLQALK-DSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPGV 111 (339)
Q Consensus 41 s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~A~~-~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 111 (339)
+|.++++.+++.|++.+-+.+.| ..+++.+. ..+++|.+|--... .+.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHHc---------
Confidence 68889999999999999999875 24666655 46889998865433 2333444331
Q ss_pred eEEEEEcccccc
Q 044365 112 KFSYITLGNEVI 123 (339)
Q Consensus 112 ~I~~I~VGNE~l 123 (339)
-...|++|+|.+
T Consensus 100 Ga~~viigt~~~ 111 (233)
T cd04723 100 GASRVIVGTETL 111 (233)
T ss_pred CCCeEEEcceec
Confidence 244578899987
No 122
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.38 E-value=6.4e+02 Score=23.12 Aligned_cols=69 Identities=7% Similarity=0.174 Sum_probs=47.0
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCC--------hHHHHHHhh-CCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCC
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPK--------QAVLQALKD-SNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPG 110 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~A~~~-~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 110 (339)
.+|-++++.+++.|++.+-+.|.| ..+++.+.+ .-++|.+|=-. . +.+.+++++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGI---r----s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGI---R----DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCc---C----CHHHHHHHHHC--------
Confidence 478899999999999999999876 256777665 44578886433 2 22444555542
Q ss_pred ceEEEEEccccccC
Q 044365 111 VKFSYITLGNEVIP 124 (339)
Q Consensus 111 ~~I~~I~VGNE~l~ 124 (339)
-+..|+||++.+.
T Consensus 95 -Ga~kvvigt~a~~ 107 (232)
T PRK13586 95 -DVNALVFSTIVFT 107 (232)
T ss_pred -CCCEEEECchhhC
Confidence 2445789999874
No 123
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.20 E-value=5.9e+02 Score=22.65 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCEEEecCCC---------hHHHHHHhhCCCeEEE--eeCCccchhccCCHHHHHHHHHHhhhhcCCCce
Q 044365 44 KVIDLIKSNKINKVRIFEPK---------QAVLQALKDSNLELAL--GTRNEDLQSLATDPSAATKFVQENVVAYSPGVK 112 (339)
Q Consensus 44 ~v~~~l~~~~~~~VR~Y~~d---------~~vl~A~~~~gikv~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~ 112 (339)
..++.+.++|.++|=+.+.. ....++++..|+++.. ..+.....+.....+.+.+|++.+ ..
T Consensus 99 ~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~ 171 (265)
T cd01543 99 MAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-------PK 171 (265)
T ss_pred HHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------CC
Confidence 34555666677776655432 1234556677877621 111111111112234455665532 23
Q ss_pred EEEEEccccccCCCCHHHHHHHHHHHHHHHHhcCCC----cceeeeeeccccccccCCCCcccCcchHHHHHHHHH
Q 044365 113 FSYITLGNEVIPGQYANFVFDAMQNMQNALKAANVN----VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVS 184 (339)
Q Consensus 113 I~~I~VGNE~l~~~~~~~l~~~i~~vk~~l~~~gl~----i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~ 184 (339)
+++|.+.|+.+ ...+-++|++.|+. +.|.+-+..........|...+...+.....+..++
T Consensus 172 ~~ai~~~~d~~-----------a~g~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 172 PVGIFACTDAR-----------ARQLLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred CcEEEecChHH-----------HHHHHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 56777777764 12233455556662 565555543322222234444555554333333333
No 124
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=21.08 E-value=1.6e+02 Score=26.41 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCC-cceeeeeeccccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceeccc
Q 044365 133 DAMQNMQNALKAANVN-VPVSTVVATSVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVY 198 (339)
Q Consensus 133 ~~i~~vk~~l~~~gl~-i~VsT~~~~~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiy 198 (339)
.+++.+.+.+...|+. |++.+..... +|... ....++++.+.+.+=|+.+|+-
T Consensus 85 ~~~~~l~~~~~~~g~~Gv~l~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 85 DAVEELERALQELGFRGVKLHPDLGGF------DPDDP-------RLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHTTTESEEEEESSETTC------CTTSG-------HCHHHHHHHHHHHT-EEEEEES
T ss_pred hHHHHHHHhccccceeeeEecCCCCcc------ccccH-------HHHHHHHHHHHhhccceeeecc
Confidence 5788888888888885 8876644211 11110 1224888888888877777743
No 125
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=21.08 E-value=5e+02 Score=24.39 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCChHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCC
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSP 109 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~ 109 (339)
.-+.|++.+|.++|++.-|. +-++.|.. +-|.. ++..+|..|++.+-.|.-+
T Consensus 31 ~eANemlAlL~~~gI~A~K~---------~~~~g~~~--l~Ve~-------~~fa~Av~iL~~~GlPr~~ 82 (246)
T COG4669 31 KEANEMLALLMSHGINAEKK---------ADKDGGTS--LLVEE-------SDFAEAVEILNQNGLPRKK 82 (246)
T ss_pred hHHHHHHHHHHHcCCcceee---------ccCCCceE--EEEcH-------HHHHHHHHHHHhcCCCCCC
Confidence 34567999999999988766 22333444 33332 2346788899987666433
No 126
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.03 E-value=6.3e+02 Score=22.94 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=62.6
Q ss_pred eEEecCCCCCCCCHHHHHHHHhhCCCCEEEecCC---C-hHHHHHHhhCCCeEEE-eeCCccchh-------ccCCHHHH
Q 044365 29 GVNYGLLGDNLPTPDKVIDLIKSNKINKVRIFEP---K-QAVLQALKDSNLELAL-GTRNEDLQS-------LATDPSAA 96 (339)
Q Consensus 29 Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VR~Y~~---d-~~vl~A~~~~gikv~l-Gv~~~~~~~-------~a~~~~~a 96 (339)
.+|.+....+. +.++.++.+++.||+.|-+... + ..+.+.++++||++.. +++.++... .....++.
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09997 5 SANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEF 83 (258)
T ss_pred eeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHH
Confidence 34444333333 4678899999999999998764 3 3677778899999875 333322110 01112222
Q ss_pred HHHHHHhh--hhcCCCceEEEEEccccc--cCC-CCHHHHHHHHHHHHHHHHhcCCC
Q 044365 97 TKFVQENV--VAYSPGVKFSYITLGNEV--IPG-QYANFVFDAMQNMQNALKAANVN 148 (339)
Q Consensus 97 ~~wv~~~v--~~~~~~~~I~~I~VGNE~--l~~-~~~~~l~~~i~~vk~~l~~~gl~ 148 (339)
.+.+++.+ ...++...| .+..|.-. ... .....+...++.+-...++.|+.
T Consensus 84 ~~~~~~~i~~a~~lga~~i-~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKI-NCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 22333322 122233333 33445421 101 12456677777777777777744
No 127
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.93 E-value=4.1e+02 Score=24.61 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=47.8
Q ss_pred CCHHHHHHHHhhCCCCEEEecCCC---------hHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcCCC
Q 044365 40 PTPDKVIDLIKSNKINKVRIFEPK---------QAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYSPG 110 (339)
Q Consensus 40 ~s~~~v~~~l~~~~~~~VR~Y~~d---------~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 110 (339)
.+|-++++.+++.|++.+-+.|.| .++++.+++.=++|.+|=-. . +.+.+++|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGI---r----s~e~~~~~l~~-------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGI---R----SLDYAEKLRKL-------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCC---C----CHHHHHHHHHC--------
Confidence 478899999999999999999876 25677776533677775333 2 33455666542
Q ss_pred ceEEEEEccccccCC
Q 044365 111 VKFSYITLGNEVIPG 125 (339)
Q Consensus 111 ~~I~~I~VGNE~l~~ 125 (339)
-+..|++|++.+.+
T Consensus 95 -Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 -GYRRQIVSSKVLED 108 (241)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899998743
No 128
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.54 E-value=2.5e+02 Score=28.94 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=27.2
Q ss_pred HHHHhhCCCCEEEecCC--C----hHHHHHHhhCCCeEEEeeCC
Q 044365 46 IDLIKSNKINKVRIFEP--K----QAVLQALKDSNLELALGTRN 83 (339)
Q Consensus 46 ~~~l~~~~~~~VR~Y~~--d----~~vl~A~~~~gikv~lGv~~ 83 (339)
++..+.+|++.+|+|+. | ...++++++.|..+.+.+-.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 44556789999999986 2 34567778899886654443
No 129
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.28 E-value=6e+02 Score=24.75 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=81.4
Q ss_pred cCCCCCCCCHHHHHHH-------HhhCCCCEE-EecCCChHHHHHHhhCCCeEEEeeCCccchhccCCHHHHHHHHHHhh
Q 044365 33 GLLGDNLPTPDKVIDL-------IKSNKINKV-RIFEPKQAVLQALKDSNLELALGTRNEDLQSLATDPSAATKFVQENV 104 (339)
Q Consensus 33 ~~~~~~~~s~~~v~~~-------l~~~~~~~V-R~Y~~d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v 104 (339)
..+.+++|++....+. ++.. .+.. ++-.+..++..++++..+.+++++-+ ...+..+...+..+-+..+
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~d~~~a~~~gk~~~~l~~eg--a~~~~~dl~~L~~~~~~Gv 122 (313)
T COG2355 46 VSVGEGFPTTNKSRDALGQQLKFIRIL-SELERRLVRTAADIRLALKEGKIGAVLHMEG--AEPLGDDLDKLELFHALGV 122 (313)
T ss_pred cccCCCCCCchhHHHHHHHHHHHHHHH-HhhhhhhcccHHHHHHHhhcCceeEEEeccC--cccccccHHHHHHHHHhCc
Confidence 3456678877643322 2211 1222 34444567888888889999999875 4556666666666544332
Q ss_pred hhcCCCceEEEEEccccccC----------C--CCHHHHHHHHHHHHH-----------HHHhcCCC-cceeeeeecccc
Q 044365 105 VAYSPGVKFSYITLGNEVIP----------G--QYANFVFDAMQNMQN-----------ALKAANVN-VPVSTVVATSVL 160 (339)
Q Consensus 105 ~~~~~~~~I~~I~VGNE~l~----------~--~~~~~l~~~i~~vk~-----------~l~~~gl~-i~VsT~~~~~~~ 160 (339)
+..+++==.-..+ | +.-.+|+..|+++.= ....+.+. -||-.+++..-.
T Consensus 123 -------R~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~a 195 (313)
T COG2355 123 -------RSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARA 195 (313)
T ss_pred -------eEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchh
Confidence 2222221111111 1 145778887777642 22222222 455554543221
Q ss_pred ccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCcc
Q 044365 161 GSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFPY 203 (339)
Q Consensus 161 ~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 203 (339)
...+| +.+-...++.+.+++-.+++|.||.|-.
T Consensus 196 l~~h~----------RNl~D~qlkaI~~~gGvIgv~~~~~fl~ 228 (313)
T COG2355 196 LVDHP----------RNLSDEQLKAIAETGGVIGVNFIPAFLR 228 (313)
T ss_pred ccCCC----------CCCCHHHHHHHHhcCCEEEEEeehhhcc
Confidence 11111 1223345666789999999999999875
No 130
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.14 E-value=8.8e+02 Score=24.23 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=74.5
Q ss_pred eEEecCCCC---CCCCHHHHHH---HHhhCCCCEEEecCCC--------------hHHHHHHhh-CCC-eEEEeeCCccc
Q 044365 29 GVNYGLLGD---NLPTPDKVID---LIKSNKINKVRIFEPK--------------QAVLQALKD-SNL-ELALGTRNEDL 86 (339)
Q Consensus 29 Gi~Y~~~~~---~~~s~~~v~~---~l~~~~~~~VR~Y~~d--------------~~vl~A~~~-~gi-kv~lGv~~~~~ 86 (339)
.+|.-|+.. ...++++|++ .+...|++.|.+.+.| .++|+.+.+ .|+ .+-++... .
T Consensus 139 sFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p 216 (418)
T PRK14336 139 TYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSH--P 216 (418)
T ss_pred ccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccC--h
Confidence 456554422 2577888855 3445688888887654 134555543 232 33333211 1
Q ss_pred hhccCCHHHHHHHHHHhhhhcCCCceEEEEEcccccc----CC----C-CHHHHHHHHHHHHHHHHhcCCCcceeeeeec
Q 044365 87 QSLATDPSAATKFVQENVVAYSPGVKFSYITLGNEVI----PG----Q-YANFVFDAMQNMQNALKAANVNVPVSTVVAT 157 (339)
Q Consensus 87 ~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l----~~----~-~~~~l~~~i~~vk~~l~~~gl~i~VsT~~~~ 157 (339)
..+. ++..+.++.. + .....+.+|=|-. .. . +.++...+++.+|+.+.. +.++|..-.
T Consensus 217 ~~i~---~ell~~l~~~-----~-~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pg----i~i~~d~Iv 283 (418)
T PRK14336 217 KDIS---QKLIDAMAHL-----P-KVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPD----ISLQTDLIV 283 (418)
T ss_pred hhcC---HHHHHHHHhc-----C-ccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCC----CEEEEEEEE
Confidence 1121 2223333321 1 1244566654433 21 2 578888888888886432 566665533
Q ss_pred cccccccCCCCcccCcchHHHHHHHHHHHHhcCCcceecccCCCc
Q 044365 158 SVLGSSYPPSNATFGQDASAVMEKIVSFLQQNQYPLLANVYTCFP 202 (339)
Q Consensus 158 ~~~~~~~Pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 202 (339)
.+| |. -.+-+...++|+.+. .+-.+|+++|-.
T Consensus 284 -----GfP---GE----T~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 284 -----GFP---SE----TEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred -----ECC---CC----CHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 244 21 124456677776553 344567777654
No 131
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.06 E-value=89 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.8
Q ss_pred ChhhHHHHHHHHHHHhhcccc
Q 044365 1 MARLVLIFFIVACLKTAAPAG 21 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (339)
|.-|.+..++.|++++.++..
T Consensus 1 mnn~Si~VLlaLvLIg~fAVq 21 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQ 21 (71)
T ss_pred CCchhHHHHHHHHHHhhheee
Confidence 445555555555555555333
No 132
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=20.06 E-value=2e+02 Score=26.25 Aligned_cols=71 Identities=10% Similarity=0.273 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHhhCCCCEEEecCCC---------hHHHHHHh-hCCCeEEEeeCCccchhccCCHHHHHHHHHHhhhhcC
Q 044365 39 LPTPDKVIDLIKSNKINKVRIFEPK---------QAVLQALK-DSNLELALGTRNEDLQSLATDPSAATKFVQENVVAYS 108 (339)
Q Consensus 39 ~~s~~~v~~~l~~~~~~~VR~Y~~d---------~~vl~A~~-~~gikv~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~ 108 (339)
..+|-++++.+.+.+++.+-+-|.| ..++..+. ..+++|.+|--.. +.+.++.|+..
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~------ 94 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDA------ 94 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHT------
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHh------
Confidence 3678899999988999999888765 23554444 6799999986643 33455666542
Q ss_pred CCceEEEEEccccccCC
Q 044365 109 PGVKFSYITLGNEVIPG 125 (339)
Q Consensus 109 ~~~~I~~I~VGNE~l~~ 125 (339)
-+..|++|.|.+.+
T Consensus 95 ---Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 95 ---GADRVVIGTEALED 108 (229)
T ss_dssp ---T-SEEEESHHHHHC
T ss_pred ---CCCEEEeChHHhhc
Confidence 24479999998743
Done!