BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044367
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 74/356 (20%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA------TTFDPSKSLTYATLPCD 152
+Y + ++G PP +LDTGSS +WV P +CG+ + +D S +Y +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWV---PSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 153 SS--YCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHN 210
+ Y T GY + +I TI + F TS+ G TF +
Sbjct: 72 FAIQYGTGSLEGYISQDTLSI-------GDLTIPKQDFAEATSEPGLTFAFG-------- 116
Query: 211 NAHFSDEQFTGVFGLGPATSSTHSLVEKV----------GSKFSYCIGNLNYFEYAYNML 260
+F G+ GLG T S +V +F++ +G+ +
Sbjct: 117 -------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 261 ILG--EGAILEGDSTPMSVIDGSYY-VTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317
G + + +GD T + V +Y+ V EGI LG++ +++ + G ID
Sbjct: 170 TFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESH-----------GAAID 218
Query: 318 SGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNIN-RDLQGFPAMAFHF 376
+GT+L L + + E+ W Y+ + N RD P + F+F
Sbjct: 219 TGTSLITLPSGLAEMINAEIG-----------AKKGWTGQYTLDCNTRD--NLPDLIFNF 265
Query: 377 AGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDL 432
G + + + S S A+ P D E L+I+G + Y YDL
Sbjct: 266 -NGYNFTIGPYDYTLEVSGSCIS-AITPMDFP-EPVGPLAIVGDAFLRKYYSIYDL 318
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 57/260 (21%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA------TTFDPSKSLTYATLPCD 152
+Y + ++G PP +LDTGSS +WV P +CG+ + +D S +Y +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWV---PSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 153 SS--YCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHN 210
+ Y T GY + +I TI + F TS+ G TF FG
Sbjct: 72 FAIQYGTGSLEGYISQDTLSI-------GDLTIPKQDFAEATSEPGLTF----AFG---- 116
Query: 211 NAHFSDEQFTGVFGLGPATSSTHSLVEKV----------GSKFSYCIGNLNYFEYAYNML 260
+F G+ GLG T S +V +F++ +G+ +
Sbjct: 117 -------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 261 ILG--EGAILEGDSTPMSVIDGSYY-VTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317
G + + +GD T + V +Y+ V EGI LG++ +++ + G ID
Sbjct: 170 TFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESH-----------GAAID 218
Query: 318 SGTTLTWLVPSAYQTLRKEV 337
+GT+L L + + E+
Sbjct: 219 TGTSLITLPSGLAEMINAEI 238
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA------TTFDPSKSLTYATLPCD 152
+Y + ++G PP +LDTGSS +WV P +CG+ + +D S +Y +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWV---PSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 153 SS--YCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHN 210
+ Y T GY + +I TI + F TS+ G TF +
Sbjct: 72 FAIQYGTGSLEGYISQDTLSI-------GDLTIPKQDFAEATSEPGLTFAFG-------- 116
Query: 211 NAHFSDEQFTGVFGLGPATSSTHSLVEKV----------GSKFSYCIGNLNYFEYAYNML 260
+F G+ GLG T S +V +F++ +G+ +
Sbjct: 117 -------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Query: 261 ILG--EGAILEGDSTPMSVIDGSYY-VTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317
G + + +GD T + V +Y+ V EGI LG++ +++ + G ID
Sbjct: 170 TFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESH-----------GAAID 218
Query: 318 SGTTLTWLVPSAYQTLRKEV 337
+GT+L L + + E+
Sbjct: 219 TGTSLITLPSGLAEMINAEI 238
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYATLPCDSSY 155
++ SIG PP + DTGSS +WV C T F PS+S TY+ P S
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ-PGQS-- 81
Query: 156 CTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFL-YDVGFGCSHNNAHF 214
++I+Y G S G IG++Q S EG T + G + F
Sbjct: 82 -------------FSIQYGTGSLS-GIIGADQ----VSVEGLTVVGQQFGESVTEPGQTF 123
Query: 215 SDEQFTGVFGLG 226
D +F G+ GLG
Sbjct: 124 VDAEFDGILGLG 135
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 139/375 (37%), Gaps = 84/375 (22%)
Query: 93 ISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWV-----KCQP---------CEQCGATTF 138
I+ P + + +G Q V+DTGSS +WV +CQ C+Q G TF
Sbjct: 8 INEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEG--TF 65
Query: 139 DPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKT 198
DPS S + L D ++I Y + SQG +
Sbjct: 66 DPSSSSSAQNLNQD----------------FSIEYGDLTSSQG----------------S 93
Query: 199 FLYD-VGF-GCSHNNAHFSDEQFT----GVFGLG-PATSSTHSLVEKVGSKF-SYCIGNL 250
F D VGF G S N F+D T G+ G+G A + ++L + V I N
Sbjct: 94 FYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINK 153
Query: 251 NYFEYAYNMLILGEGAILEGDSTPMSVIDGSYYVTLEGI---SLGEKMLDIDPNLFKKND 307
N + N G I+ G V + Y TL + S E + + F
Sbjct: 154 NAYSLYLNSEDASTGKIIFG-----GVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTS 208
Query: 308 TWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQ 367
++A V +DSGTT+T+ S + V + Y + P+ L SG+
Sbjct: 209 VSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYRL-PSCDL--SGD------ 259
Query: 368 GFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYN 427
F+F G + + + ++S S C G D +I+G +
Sbjct: 260 ----AVFNFDQGVKITVPLSELILKDSDSSICYF-------GISRNDANILGDNFLRRAY 308
Query: 428 VAYDLVSKQLYFQRI 442
+ YDL K + ++
Sbjct: 309 IVYDLDDKTISLAQV 323
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 120/347 (34%), Gaps = 73/347 (21%)
Query: 93 ISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCG-------ATTFDPSKSLT 145
I+ P + S+G Q ++DTGSS WV QCG + TF PS S +
Sbjct: 8 INEGPSYASKVSVGSNKQQQTVIIDTGSSDFWV-VDSNAQCGKGVDCKSSGTFTPSSSSS 66
Query: 146 YATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDV-- 203
Y L + IRY +G SQGT G + + DV
Sbjct: 67 YKNLG----------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ 110
Query: 204 --------GFGCSHNNAHF--SDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYF 253
G G + N A + S Q T + P T + N +
Sbjct: 111 TSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRT------------NAY 158
Query: 254 EYAYNMLILGEGAILEGDSTPMSVIDGSYY---VTLEGISLGEKMLDIDPNLFKKNDTWS 310
N G I+ G +D + Y + E ++ + + ++ K ++S
Sbjct: 159 SLYLNSPSAETGTIIFGG------VDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFS 212
Query: 311 -DAGVFIDSGTTLTWLVPS--AYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQ 367
G +DSGTTLT+ PS A Q K L Q Y Y + N D
Sbjct: 213 FGDGALLDSGTTLTYF-PSDFAAQLADKAGARLVQVARDQY--------LYFIDCNTDTS 263
Query: 368 GFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSD--INGERF 412
G F+F GA + + YQ + PSD I G+ F
Sbjct: 264 G--TTVFNFGNGAKITVPNTEYVYQNGDGTCLWGIQPSDDTILGDNF 308
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYAT 148
++ SIG PP L + DTGSS +WV C+ T+ F+PS+S TY+T
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYST 66
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 26/109 (23%)
Query: 92 GISTVPV--------FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA--TTFDPS 141
G+ TVP+ +Y +IG P DTGSS +W+ C CG+ T +DP+
Sbjct: 2 GVGTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTKYDPN 61
Query: 142 KSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNF 190
+S TY D ++I Y +G + G + + N
Sbjct: 62 QSSTYQA----------------DGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 26/109 (23%)
Query: 92 GISTVPV--------FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA--TTFDPS 141
G+ TVP+ +Y +IG P DTGSS +W+ C CG+ T +DP+
Sbjct: 2 GVGTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPN 61
Query: 142 KSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNF 190
+S TY D ++I Y +G + G + + N
Sbjct: 62 QSSTYQA----------------DGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 105 IGQPPVPQLAVLDTGSSLIWVKCQPCEQ--C-GATTFDPSKSLTYATL--PCDSSYCTND 159
IG PP V DTGSS +WV C+ C FDP KS T+ L P Y T
Sbjct: 19 IGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS 78
Query: 160 CGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQF 219
G+ + + +N D T+G T G+ F Y +F
Sbjct: 79 MEGFLG--YDTVTVSNIVDPNQTVG-----LSTEQPGEVFTY---------------SEF 116
Query: 220 TGVFGLG-PATSSTHSL 235
G+ GL P+ +S +S+
Sbjct: 117 DGILGLAYPSLASEYSV 133
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 190
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 66 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 117
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 68
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 68
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 66
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY + +G P +LDTGS+ +WV C G T +D SKS TY
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 66
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWV---KCQPCEQCGA-TTFDPSKSLTY 146
++ IG PP + DTGSS++WV KC + C A + ++ S S TY
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTY 66
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 28/137 (20%)
Query: 105 IGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYATL--PCDSSYCTND 159
+G PP + DTGSS WV C+ FDP KS T+ L P Y T
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS 81
Query: 160 CGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQF 219
G + + +N D Q T+G T + G F Y +F
Sbjct: 82 MQGILG--YDTVTVSNIVDIQQTVG-----LSTQEPGDVFTY---------------AEF 119
Query: 220 TGVFGLG-PATSSTHSL 235
G+ G+ P+ +S +S+
Sbjct: 120 DGILGMAYPSLASEYSI 136
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 112/331 (33%), Gaps = 72/331 (21%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGAT-----TFDPSKSLTYATLPCDS 153
+Y IG PP V DTGSS +WV C + FD S S S
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS---------S 70
Query: 154 SYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSD----EGKTFLYDVGFGCSH 209
SY N +RY+ G S F + D G T G
Sbjct: 71 SYKHNG-------TELTLRYSTGTVS---------GFLSQDIITVGGITVTQMFGEVTEM 114
Query: 210 NNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYAYNMLILGEGAILE 269
F +F GV G+G + + + S + + F + YN LG G I+
Sbjct: 115 PALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSLG-GQIVL 173
Query: 270 GDSTPMS----------VIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSG 319
G S P + G + + ++G+S+G L + DT G SG
Sbjct: 174 GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT----GASYISG 229
Query: 320 TTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGG 379
+T +E L + L + C G P ++FH GG
Sbjct: 230 ST-------------SSIEKLMEALGAKKRLFDYVVKCNEGPT------LPDISFHL-GG 269
Query: 380 ADLVLDAESVFYQE--SSSVFC-LAVGPSDI 407
+ L + +QE SS C LA+ DI
Sbjct: 270 KEYTLTSADYVFQESYSSKKLCTLAIHAMDI 300
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 138/381 (36%), Gaps = 88/381 (23%)
Query: 115 VLDTGSSLIWVKCQ----PCE-QCGATTFDPSKSLTYATLPCDSSYCTND-----CGGYP 164
VLD L+W C+ P E C + T + + Y C + C +D C YP
Sbjct: 29 VLDVAGLLVWSTCEGGQSPAEIACSSPTCLLANA--YPAPGCPAPSCGSDRHDKPCTAYP 86
Query: 165 DECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFL---YDVGFGCSHNNAHFS-DEQFT 220
G + G++ +F T+D K V C+ + S T
Sbjct: 87 SN------PVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGST 140
Query: 221 GVFGL---GPATSSTHSLVEKVGSKFSYCI------------GNLNYFEYAYNMLILGEG 265
GV GL G A S + +KV +KF C+ G L + ++ +M
Sbjct: 141 GVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSM------ 194
Query: 266 AILEGDSTPMSVIDGS--YYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLT 323
D TP+ GS +Y++ I + + I G L+
Sbjct: 195 -----DYTPLVAKGGSPAHYISARSIKVENTRVPISER------------ALATGGVMLS 237
Query: 324 WLVPSAYQTLRKEV----EDLFQGLLPSYPMDPA-----------WHLCY-SGNINRDLQ 367
+P Y LR++V D F L + P + A + LCY + + +
Sbjct: 238 TRLP--YVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPG 295
Query: 368 GF--PAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLS----IIGMI 421
G+ P + GG+D + ++ C+A ++ G D S I+G
Sbjct: 296 GYWVPNVLLELDGGSDWAMTGKNSMVDVKPGTACVAF--VEMKGVDAGDGSAPAVILGGA 353
Query: 422 AQQNYNVAYDLVSKQLYFQRI 442
+++ + +D+ K+L F R+
Sbjct: 354 QMEDFVLDFDMEKKRLGFLRL 374
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 104 SIGQPPVPQLAVLDTGSSLIWV---KCQPCEQC-GATTFDPSKSLTY 146
SIG P L + DTGSS WV C E C G+ FDPS S T+
Sbjct: 25 SIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTF 71
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+Y SIG PP + DTGSS +WV C + F P +S TY
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 28/137 (20%)
Query: 105 IGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYATL--PCDSSYCTND 159
+G PP + DTGSS WV C+ FDP KS T+ L P Y T
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS 81
Query: 160 CGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQF 219
G + + +N D Q T+G T + G F Y +F
Sbjct: 82 MQGILG--YDTVTVSNIVDIQQTVG-----LSTQEPGDFFTY---------------AEF 119
Query: 220 TGVFGLG-PATSSTHSL 235
G+ G+ P+ +S +S+
Sbjct: 120 DGILGMAYPSLASEYSI 136
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYAT--LPCD 152
+FY IG P + + DTGS+ +WV C+ G +T +D S S +Y +
Sbjct: 15 MFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVE 74
Query: 153 SSYCTNDCGGY 163
SY + GY
Sbjct: 75 ISYGSGTVRGY 85
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 80/278 (28%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWV-----KCQP---------CEQCGATTFDPSKSL 144
+ + ++G ++DTGSS +WV CQ C+Q G T+DPS S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 145 TYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVG 204
L ++I Y +G SQGT+ + VG
Sbjct: 72 ASQDL----------------NTPFSIGYGDGSSSQGTL---------------YKDTVG 100
Query: 205 FG-CSHNNAHFSDEQFT----GVFGLGPATSSTHS-------LVEKVG--SKFSYCIGNL 250
FG S N +D T G+ G+G T+ ++K G +K +Y + L
Sbjct: 101 FGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL-YL 159
Query: 251 NYFEYAYNMLILG--EGAILEGDSTPMSVI-DGSYYVTLEGISLGEKMLDIDPNLFKKND 307
N + A +I G + A G + V D ++L + + K ++ D
Sbjct: 160 NSPDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTD-------- 211
Query: 308 TWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLL 345
+ V +DSGTT+T+L Q L ++ F G L
Sbjct: 212 ---NVDVLLDSGTTITYL----QQDLADQIIKAFNGKL 242
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
+FY +G + + DTGS+ +WV + C G +T +D SKS +Y
Sbjct: 15 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKSKSY 66
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 105/278 (37%), Gaps = 80/278 (28%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWV-----KCQP---------CEQCGATTFDPSKSL 144
+ + ++G ++DTGSS +WV CQ C+Q G T+DPS S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 145 TYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVG 204
L + I Y +G SQGT+ + VG
Sbjct: 72 ASQDL----------------NTPFKIGYGDGSSSQGTLYKDT---------------VG 100
Query: 205 FG-CSHNNAHFSDEQFT----GVFGLGPATSSTHS-------LVEKVG--SKFSYCIGNL 250
FG S N +D T G+ G+G T+ ++K G +K +Y + L
Sbjct: 101 FGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL-YL 159
Query: 251 NYFEYAYNMLILG--EGAILEGDSTPMSVI-DGSYYVTLEGISLGEKMLDIDPNLFKKND 307
N + A +I G + A G + V D ++L + + K ++ D
Sbjct: 160 NSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTD-------- 211
Query: 308 TWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLL 345
+ V +DSGTT+T+L Q L ++ F G L
Sbjct: 212 ---NVDVLLDSGTTITYL----QQDLADQIIKAFNGKL 242
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 53
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 50
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 53
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 53
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 49
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 46
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP V DTGSS +WV C +
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR 96
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 104 SIGQPPVPQLAVLDTGSSLIWV---KCQPCEQC-GATTFDPSKSLTY 146
SIG P + DTGSS WV C E C G FDPS S T+
Sbjct: 25 SIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTF 71
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYAT--LPCD 152
+FY +G + + DTGS+ +WV + C G + +D SKS +Y D
Sbjct: 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVD 122
Query: 153 SSYCTNDCGGY 163
+Y + G+
Sbjct: 123 ITYGSGTVKGF 133
>pdb|3SJV|E Chain E, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|J Chain J, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|O Chain O, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|T Chain T, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|B Chain B, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|D Chain D, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|F Chain F, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|H Chain H, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 244
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 24/105 (22%)
Query: 316 IDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFH 375
+ GTT VP Y R + ++ GL + P + + C SG N D+Q +
Sbjct: 52 VGEGTTAKGEVPDGYNVSRLKKQNFLLGLESAAPSQTSVYFCASGQGNFDIQ-------Y 104
Query: 376 FAGGADLVL--DAESVF---------------YQESSSVFCLAVG 403
F G L + D ++VF + + +++ CLA G
Sbjct: 105 FGAGTRLSVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG 149
>pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With
Unknown Function From Saccharomyces Cerevisiae
Length = 254
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 204 GFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNL---NYFEYAYNML 260
G G S + FS ++ T V+G+ + + L EK G +F Y +G++ + + N
Sbjct: 13 GIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAA 72
Query: 261 ILGEGAI 267
+ G G I
Sbjct: 73 VKGHGKI 79
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTYAT--LPCD 152
+FY +G + + DTGS+ +WV + C G + +D SKS +Y D
Sbjct: 17 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVD 76
Query: 153 SSYCTNDCGGY 163
+Y + G+
Sbjct: 77 ITYGSGTVKGF 87
>pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
Length = 197
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 28 AAPAAGKPKRLVTKLLHRDSLLYNPNDTVDAQAQRTLNMSMARFIYLSQKSSQKA 82
AAP G P R++ ++ + Y P + + AQ +R ++ + L ++S++KA
Sbjct: 51 AAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKA 105
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
++ IG P V DTGSS +WV C T F+P S TY
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
++ IG P V DTGSS +WV C T F+P S TY
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132
+Y IG PP + DTGS+ +WV C +
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSR 50
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATT---FDPSKSLTY 146
++Y IG + DTGS+ +WV C G T +D +KS TY
Sbjct: 22 MYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTY 73
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 114/313 (36%), Gaps = 76/313 (24%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWV--------KCQPCEQC----GATTFDPSKSLTY 146
+ + +IG ++DTGSS +WV K +P + G + P S T
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 147 ATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDV--- 203
L G P + I Y +G SQGT+ + F + K D+
Sbjct: 74 QNL------------GTP----FYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKT 117
Query: 204 -------GFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKVGSKFSYCIGNLNYFEYA 256
G G N A G + P T ++ +K +Y + LN A
Sbjct: 118 SIPQGILGIGYKTNEA-------AGDYDNVPVTLKNQGVI----AKNAYSL-YLNSPNAA 165
Query: 257 YNMLILG--EGAILEGDSTPMSVI-DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAG 313
+I G + A G + V D +TL SL +I+ N+
Sbjct: 166 TGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLN--SLKAVGKNINGNI----------D 213
Query: 314 VFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMA 373
V +DSGTT+T+L Q + +++ D FQ L S D H Y D Q +
Sbjct: 214 VLLDSGTTITYL----QQDVAQDIIDAFQAELKS---DGQGHTFYV----TDCQTSGTVD 262
Query: 374 FHFAGGADLVLDA 386
F+F A + + A
Sbjct: 263 FNFDNNAKISVPA 275
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 94/248 (37%), Gaps = 42/248 (16%)
Query: 95 TVPVFYVN--------FSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTY 146
TVPV +N ++G V+DTGSS +WV P Q
Sbjct: 2 TVPVKLINEQVSYASDITVGSNKQKLTVVIDTGSSDLWV---PDSQVSCQ---------- 48
Query: 147 ATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFG 206
A D ++C N+ G Y + + N P S ++ T+ +G + +GFG
Sbjct: 49 AGQGQDPNFCKNE-GTYSPSSSSSSQNLNSP------FSIEYGDGTTSQGTWYKDTIGFG 101
Query: 207 -CSHNNAHFSDEQFT----GVFGLGPATSSTHSLVEKVGSKF-SYCIGNLNYFEYAYNML 260
S F+D T G+ G+G T + V + I + N + N
Sbjct: 102 GISITKQQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSR 161
Query: 261 ILGEGAILEGDSTPMSVIDGSYYVTLEGISL-GEKMLDIDPNLFK--KNDTWSDAGVFID 317
G I+ G V + Y TL + + + L I N K +D V +D
Sbjct: 162 QATSGQIIFG-----GVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVDVLLD 216
Query: 318 SGTTLTWL 325
SGTT+T+L
Sbjct: 217 SGTTITYL 224
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE 131
+Y IG PP V DTGSS +WV C+
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA----TTFDPSKSLTYAT--LPCD 152
++ +G PP + DTGSS +WV C A + + S TY P
Sbjct: 54 YFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAA 113
Query: 153 SSYCTNDCGGYPDECWYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNA 212
Y T GY E + + ++F T + G TFL
Sbjct: 114 IQYGTGSIAGYFSEDSVTV-------GDLVVKDQEFIEATKEPGITFLV----------- 155
Query: 213 HFSDEQFTGVFGLG 226
+F G+ GLG
Sbjct: 156 ----AKFDGILGLG 165
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 51/261 (19%)
Query: 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTN 158
+Y+ IG PP ++DTGSS V P T FD +S TY + D +
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID-TYFDTERSSTYRSKGFDVT---- 69
Query: 159 DCGGYPDECWYNIRYTNGPDSQGTIGSEQFN----FETSDEGKTFLYDVGFGCSHNNAHF 214
++YT G G +G + F TS FL ++ N
Sbjct: 70 ------------VKYTQG-SWTGFVGEDLVTIPKGFNTS-----FLVNIATIFESENFFL 111
Query: 215 SDEQFTGVFGLGPAT-----SSTHSLVEKVGSK--------FSYCIGNLNYFEYAYN--M 259
++ G+ GL AT SS + + + ++ C L N
Sbjct: 112 PGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGS 171
Query: 260 LILG--EGAILEGDSTPMSVIDGSYY-VTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFI 316
L+LG E ++ +GD + + YY + + + +G + L++D + + +
Sbjct: 172 LVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADK------AIV 225
Query: 317 DSGTTLTWLVPSAYQTLRKEV 337
DSGTTL L + + + V
Sbjct: 226 DSGTTLLRLPQKVFDAVVEAV 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,123,445
Number of Sequences: 62578
Number of extensions: 628219
Number of successful extensions: 1494
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 72
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)