Query 044367
Match_columns 450
No_of_seqs 287 out of 1738
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3.9E-70 8.6E-75 549.8 44.6 393 32-447 19-431 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.2E-55 2.7E-60 442.3 36.2 333 94-445 42-397 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2.8E-54 6E-59 436.7 36.7 305 93-448 115-452 (482)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-54 5.7E-59 422.6 31.1 295 97-445 2-326 (326)
5 cd05472 cnd41_like Chloroplast 100.0 1.8E-53 3.8E-58 412.4 33.2 288 98-444 1-299 (299)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 8.9E-54 1.9E-58 419.2 31.2 297 96-441 4-325 (325)
7 cd05486 Cathespin_E Cathepsin 100.0 4.7E-53 1E-57 412.3 29.9 294 99-441 1-316 (316)
8 cd05477 gastricsin Gastricsins 100.0 2.4E-52 5.2E-57 407.8 32.7 297 97-442 2-318 (318)
9 cd05478 pepsin_A Pepsin A, asp 100.0 2.9E-52 6.2E-57 407.0 30.0 290 96-441 8-317 (317)
10 cd05487 renin_like Renin stimu 100.0 4.7E-52 1E-56 406.9 30.4 297 96-442 6-326 (326)
11 cd06098 phytepsin Phytepsin, a 100.0 1.1E-51 2.3E-56 402.6 31.9 286 96-441 8-317 (317)
12 cd05485 Cathepsin_D_like Cathe 100.0 1.4E-51 3.1E-56 403.6 31.3 297 96-441 9-329 (329)
13 cd05488 Proteinase_A_fungi Fun 100.0 4E-51 8.8E-56 399.2 30.9 294 96-441 8-320 (320)
14 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-50 8.3E-55 403.6 35.0 289 96-443 137-450 (453)
15 cd05489 xylanase_inhibitor_I_l 100.0 2.9E-50 6.2E-55 397.0 33.1 314 105-442 2-361 (362)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.1E-50 1.5E-54 400.8 34.6 289 96-443 136-449 (450)
17 cd05473 beta_secretase_like Be 100.0 1.1E-49 2.3E-54 395.9 31.0 316 97-448 2-351 (364)
18 cd05476 pepsin_A_like_plant Ch 100.0 2.7E-49 5.8E-54 376.3 28.8 252 98-444 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 4.2E-49 9E-54 376.3 28.8 256 97-444 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 9.5E-48 2.1E-52 368.3 26.3 258 99-441 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.3E-46 2.9E-51 367.5 21.8 292 98-442 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 4.2E-45 9.1E-50 353.4 26.2 264 98-442 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 4.9E-43 1.1E-47 336.6 27.8 262 99-441 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.4E-30 3.1E-35 228.5 14.8 154 99-264 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 5.9E-26 1.3E-30 199.1 15.4 156 281-441 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 7.9E-23 1.7E-27 167.4 12.2 103 101-225 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 6.8E-06 1.5E-10 64.8 7.5 94 97-227 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.8 0.0074 1.6E-07 49.9 8.1 95 97-228 10-104 (121)
29 PF13650 Asp_protease_2: Aspar 96.5 0.018 4E-07 44.3 8.5 89 101-226 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.3 0.09 1.9E-06 43.6 7.7 91 97-227 15-107 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.5 0.49 1.1E-05 39.2 8.2 24 416-439 101-124 (124)
32 PF08284 RVP_2: Retroviral asp 93.0 0.2 4.3E-06 42.2 5.2 27 416-442 106-132 (135)
33 PF11925 DUF3443: Protein of u 92.2 2.2 4.9E-05 41.6 11.7 109 98-228 23-149 (370)
34 cd05484 retropepsin_like_LTR_2 91.4 0.23 5E-06 38.6 3.5 29 99-129 1-29 (91)
35 cd06095 RP_RTVL_H_like Retrope 90.7 2.5 5.4E-05 32.3 8.6 26 102-129 2-27 (86)
36 TIGR03698 clan_AA_DTGF clan AA 90.0 2.4 5.2E-05 34.0 8.3 23 415-437 85-107 (107)
37 PF13975 gag-asp_proteas: gag- 87.6 0.92 2E-05 33.5 4.0 34 97-132 7-40 (72)
38 PF00077 RVP: Retroviral aspar 82.9 2 4.2E-05 33.8 4.2 28 100-129 7-34 (100)
39 TIGR02281 clan_AA_DTGA clan AA 82.6 3.1 6.6E-05 34.3 5.3 37 278-333 8-44 (121)
40 PF13650 Asp_protease_2: Aspar 80.9 2.3 4.9E-05 32.3 3.8 22 312-333 10-31 (90)
41 cd05484 retropepsin_like_LTR_2 75.4 4.7 0.0001 31.1 4.1 30 288-333 4-33 (91)
42 PF13975 gag-asp_proteas: gag- 74.8 5.9 0.00013 29.1 4.3 21 313-333 21-41 (72)
43 cd05483 retropepsin_like_bacte 71.9 7.8 0.00017 29.6 4.6 22 312-333 14-35 (96)
44 cd05482 HIV_retropepsin_like R 71.0 5.7 0.00012 30.6 3.5 25 102-128 2-26 (87)
45 PF12384 Peptidase_A2B: Ty3 tr 70.5 2.9 6.3E-05 35.9 1.9 24 311-334 45-68 (177)
46 cd06095 RP_RTVL_H_like Retrope 65.4 9.7 0.00021 29.0 3.8 21 313-333 11-31 (86)
47 COG3577 Predicted aspartyl pro 61.2 29 0.00062 31.2 6.3 79 95-205 102-180 (215)
48 cd06094 RP_Saci_like RP_Saci_l 53.6 81 0.0018 24.3 6.9 21 311-331 9-29 (89)
49 PF12384 Peptidase_A2B: Ty3 tr 52.5 19 0.00042 31.0 3.7 29 100-128 34-62 (177)
50 PF00077 RVP: Retroviral aspar 51.6 17 0.00037 28.2 3.2 16 313-328 18-33 (100)
51 COG3577 Predicted aspartyl pro 50.4 41 0.00088 30.3 5.5 38 277-333 101-138 (215)
52 PF09668 Asp_protease: Asparty 48.2 10 0.00022 31.3 1.4 36 97-134 23-58 (124)
53 cd05481 retropepsin_like_LTR_1 46.7 27 0.00059 27.1 3.5 24 311-334 10-33 (93)
54 PF02160 Peptidase_A3: Caulifl 46.7 39 0.00085 30.4 4.9 26 415-441 92-117 (201)
55 PF09668 Asp_protease: Asparty 41.0 38 0.00082 28.0 3.7 30 288-333 28-57 (124)
56 COG5550 Predicted aspartyl pro 38.9 23 0.0005 29.0 2.0 20 314-333 29-49 (125)
57 TIGR03698 clan_AA_DTGF clan AA 35.5 47 0.001 26.5 3.4 26 101-126 2-32 (107)
58 KOG0012 DNA damage inducible p 31.9 4.4E+02 0.0095 26.0 9.6 27 416-442 320-346 (380)
59 PF15240 Pro-rich: Proline-ric 25.2 29 0.00063 30.4 0.5 16 5-20 1-16 (179)
60 cd05475 nucellin_like Nucellin 24.5 96 0.0021 29.2 4.1 32 97-128 157-194 (273)
61 PF08284 RVP_2: Retroviral asp 22.7 1.2E+02 0.0026 25.3 3.8 30 97-128 20-49 (135)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.9e-70 Score=549.76 Aligned_cols=393 Identities=34% Similarity=0.575 Sum_probs=318.2
Q ss_pred cCCCCceEEEEEcccCCCC---CCCCChhHHHHHHHHhhHHHHHHHhhccccccCccccccccCCCCcceEEEEEEECCC
Q 044367 32 AGKPKRLVTKLLHRDSLLY---NPNDTVDAQAQRTLNMSMARFIYLSQKSSQKAHDTRAHLHPGISTVPVFYVNFSIGQP 108 (450)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP 108 (450)
.+++.+++++|+||++||. .++.+..++++++++|+++|++++.++... ..++..... .+.++|+++|.||||
T Consensus 19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~~-~~~~~Y~v~i~iGTP 94 (431)
T PLN03146 19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS---PNDPQSDLI-SNGGEYLMNISIGTP 94 (431)
T ss_pred cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc---CCccccCcc-cCCccEEEEEEcCCC
Confidence 3366899999999999872 456667899999999999999998654321 112222222 234799999999999
Q ss_pred CceEEEEEECCCCceeEeCCCCCCCCC---CCCCCCCCCcceeecCCCCCCC-----CCCCCCCCCceeEeeeCCCCccc
Q 044367 109 PVPQLAVLDTGSSLIWVKCQPCEQCGA---TTFDPSKSLTYATLPCDSSYCT-----NDCGGYPDECWYNIRYTNGPDSQ 180 (450)
Q Consensus 109 ~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~y~p~~SsT~~~~~c~~~~C~-----~~c~~~~~~~~~~~~Yg~gs~~~ 180 (450)
||++.|++||||+++||+|.+|..|.. +.|||++|+||+.++|.++.|. ..|. .++.|.|.+.|+||+.+.
T Consensus 95 pq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~-~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 95 PVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS-DENTCTYSYSYGDGSFTK 173 (431)
T ss_pred CceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC-CCCCCeeEEEeCCCCcee
Confidence 999999999999999999999999974 8999999999999999999998 2365 234699999999999889
Q ss_pred eeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCCCCCCCCcHHhhh----cCceEEeecCCCCCCcc
Q 044367 181 GTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKV----GSKFSYCIGNLNYFEYA 256 (450)
Q Consensus 181 G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~~~sl~~ql----~~~Fs~~l~~~~~~~~~ 256 (450)
|.+++|+|+|++..+....++++.|||++...+.|....+||||||++ ..|+++|| .++|||||.+..+....
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~---~~Sl~sql~~~~~~~FSycL~~~~~~~~~ 250 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGG---PLSLISQLGSSIGGKFSYCLVPLSSDSNG 250 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCC---CccHHHHhhHhhCCcEEEECCCCCCCCCC
Confidence 999999999987544446789999999998887665458999999999 99999997 35899999864332234
Q ss_pred cceEEecCCCc---Ccceeccccc--CCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHH
Q 044367 257 YNMLILGEGAI---LEGDSTPMSV--IDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQ 331 (450)
Q Consensus 257 ~G~l~fG~~~d---~~~~~~pl~~--~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~ 331 (450)
.|.|+||+... ..+.|+||.. ++.+|+|+|++|+||++.+.++...|...+ .+.+||||||++++||+++|+
T Consensus 251 ~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~---~g~~iiDSGTt~t~Lp~~~y~ 327 (431)
T PLN03146 251 TSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVE---EGNIIIDSGTTLTLLPSDFYS 327 (431)
T ss_pred cceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCC---CCcEEEeCCccceecCHHHHH
Confidence 58899996432 2367899942 357999999999999999988766554222 568999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCeEEEEEEeCCCCCCC
Q 044367 332 TLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGER 411 (450)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~ 411 (450)
+++++|.+.+... ........+.+|+.... ...+|+|+|+|+ |+++.|++++|++...++..|+++....
T Consensus 328 ~l~~~~~~~~~~~-~~~~~~~~~~~C~~~~~---~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~----- 397 (431)
T PLN03146 328 ELESAVEEAIGGE-RVSDPQGLLSLCYSSTS---DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPTS----- 397 (431)
T ss_pred HHHHHHHHHhccc-cCCCCCCCCCccccCCC---CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecCC-----
Confidence 9999999887532 11111223679997431 147899999998 9999999999999877778999987543
Q ss_pred CCCceeeehhhhcceEEEEECCCCEEEEEcCCCCCc
Q 044367 412 FKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELL 447 (450)
Q Consensus 412 ~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c~~~ 447 (450)
+.+|||+.|||++|||||++++|||||+.+|+++
T Consensus 398 --~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 398 --SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred --CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 2499999999999999999999999999999874
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-55 Score=442.30 Aligned_cols=333 Identities=32% Similarity=0.542 Sum_probs=271.9
Q ss_pred CCcceEEEEEEECCCCceEEEEEECCCCceeEeCCCCC-CCCC---CCCCCCCCCcceeecCCCCCCC--CCCCCCCCCc
Q 044367 94 STVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE-QCGA---TTFDPSKSLTYATLPCDSSYCT--NDCGGYPDEC 167 (450)
Q Consensus 94 ~~~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~-~C~~---~~y~p~~SsT~~~~~c~~~~C~--~~c~~~~~~~ 167 (450)
...++|+++|.||||||+|.|++||||+++||+|..|. .|.. +.|||++|+||+.+.|.++.|. ..|...++.|
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 33479999999999999999999999999999999999 7964 4599999999999999999999 3333367899
Q ss_pred eeEeeeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC-CC-CCcceeeecCCCCCCCCcHHhhh------
Q 044367 168 WYNIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF-SD-EQFTGVFGLGPATSSTHSLVEKV------ 239 (450)
Q Consensus 168 ~~~~~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GIlGLg~~~~~~~sl~~ql------ 239 (450)
.|.+.|++|+.++|.+++|+|+|++.. ...++++.|||+..+.+. .. ...+||||||+. ..++.+|+
T Consensus 122 ~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~---~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 122 PYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRG---SLSVPSQLPSFYNA 196 (398)
T ss_pred ceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCC---CccceeecccccCC
Confidence 999999997778999999999999742 256778999999998753 21 468999999999 99999997
Q ss_pred cCceEEeecCCCCCCcccceEEecCCCcC----cceecccccCC-CceEEEEeeEEECCEEeecCCcccccCCCcCCCce
Q 044367 240 GSKFSYCIGNLNYFEYAYNMLILGEGAIL----EGDSTPMSVID-GSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGV 314 (450)
Q Consensus 240 ~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~----~~~~~pl~~~~-~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~ 314 (450)
.++||+||.+......+.|.|+||+.+.. .+.|+||.... .+|+|++++|+|+++. .+....++.+ ..++
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~----~~~~ 271 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTD----GGGA 271 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecC----CCCE
Confidence 23599999987543334599999955432 35789994333 4999999999999987 6655555543 4789
Q ss_pred EEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeC
Q 044367 315 FIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQES 394 (450)
Q Consensus 315 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~ 394 (450)
|+||||++++||.++|++|.+++.+.+.. ......+...|+...... ..+|.|+|+|++|+.|.+++++|+++..
T Consensus 272 iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y~~~~~ 346 (398)
T KOG1339|consen 272 IIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNYLVEVS 346 (398)
T ss_pred EEECCcceeeccHHHHHHHHHHHHhheec---cccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccceEEEEC
Confidence 99999999999999999999999987410 112234468999754322 3499999999988999999999999877
Q ss_pred CCeE-EEEEEeCCCCCCCCCCceeeehhhhcceEEEEECC-CCEEEEEc--CCCC
Q 044367 395 SSVF-CLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLV-SKQLYFQR--IDCE 445 (450)
Q Consensus 395 ~~~~-C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~-~~~iGfa~--~~c~ 445 (450)
.+.. |++++...... +.||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 347 ~~~~~Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 347 DGGGVCLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCCceeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 6444 99977765432 36999999999999999999 99999999 7775
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.8e-54 Score=436.67 Aligned_cols=305 Identities=19% Similarity=0.302 Sum_probs=241.4
Q ss_pred CCCcceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCcee
Q 044367 93 ISTVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWY 169 (450)
Q Consensus 93 ~~~~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~ 169 (450)
.+.+.+|+++|+||||||+|.|++||||+++||+|..|.. |.. +.|||++|+||+.+.+.. ....+
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~-----------~~~~~ 183 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD-----------ESAET 183 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-----------ccceE
Confidence 4455899999999999999999999999999999999986 876 899999999999842111 11257
Q ss_pred EeeeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC------CCcHHhhh--
Q 044367 170 NIRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS------THSLVEKV-- 239 (450)
Q Consensus 170 ~~~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~------~~sl~~ql-- 239 (450)
.+.||+|+. .|.+++|+|+|++ +.++++.||+++...+ .|. ..+|||||||+++.. ..+++++|
T Consensus 184 ~i~YGsGs~-~G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~ 257 (482)
T PTZ00165 184 YIQYGTGEC-VLALGKDTVKIGG-----LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKK 257 (482)
T ss_pred EEEeCCCcE-EEEEEEEEEEECC-----EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHH
Confidence 799999985 8999999999998 8999999999998754 343 358999999998531 23444443
Q ss_pred -----cCceEEeecCCCCCCcccceEEecCCCc------CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCC
Q 044367 240 -----GSKFSYCIGNLNYFEYAYNMLILGEGAI------LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDT 308 (450)
Q Consensus 240 -----~~~Fs~~l~~~~~~~~~~G~l~fG~~~d------~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ 308 (450)
.++||+||.+... ..|+|+||+.+. .++.|.|+ ....+|+|.+++|+||++.+.... .
T Consensus 258 qgli~~~~FS~yL~~~~~---~~G~l~fGGiD~~~~~~~g~i~~~Pv-~~~~yW~i~l~~i~vgg~~~~~~~------~- 326 (482)
T PTZ00165 258 QNLLKRNIFSFYMSKDLN---QPGSISFGSADPKYTLEGHKIWWFPV-ISTDYWEIEVVDILIDGKSLGFCD------R- 326 (482)
T ss_pred cCCcccceEEEEeccCCC---CCCEEEeCCcCHHHcCCCCceEEEEc-cccceEEEEeCeEEECCEEeeecC------C-
Confidence 5799999976432 248999996542 13567787 567899999999999998775421 1
Q ss_pred cCCCceEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecC--C--CEEEe
Q 044367 309 WSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAG--G--ADLVL 384 (450)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g--g--~~~~l 384 (450)
...+|+||||+++++|++++++|.++++.. .+|+. ...+|+|+|+|+| | .+|.|
T Consensus 327 --~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~------~~~lP~itf~f~g~~g~~v~~~l 384 (482)
T PTZ00165 327 --KCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSN------KDSLPRISFVLEDVNGRKIKFDM 384 (482)
T ss_pred --ceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------ccccc------cccCCceEEEECCCCCceEEEEE
Confidence 578999999999999999999999887432 47875 3578999999983 1 38999
Q ss_pred CCCceEEEe----CCCeEEE-EEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCCCCcc
Q 044367 385 DAESVFYQE----SSSVFCL-AVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLA 448 (450)
Q Consensus 385 ~~~~y~~~~----~~~~~C~-~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c~~~~ 448 (450)
+|++|+++. ..+..|+ +++..+.. ...++.||||++|||++|+|||.+++|||||+++|....
T Consensus 385 ~p~dYi~~~~~~~~~~~~C~~g~~~~d~~-~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~ 452 (482)
T PTZ00165 385 DPEDYVIEEGDSEEQEHQCVIGIIPMDVP-APRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSG 452 (482)
T ss_pred chHHeeeecccCCCCCCeEEEEEEECCCC-CCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCC
Confidence 999999974 2356896 46554322 122357999999999999999999999999999987643
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-54 Score=422.63 Aligned_cols=295 Identities=25% Similarity=0.425 Sum_probs=236.4
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCC---CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeee
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA---TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRY 173 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Y 173 (450)
++|+++|.||||+|++.|+|||||+++||+|.+|..|.. +.|||++|+|++.+.|++..|...|...++.|.|.+.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y 81 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISY 81 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEE
Confidence 689999999999999999999999999999999999965 78999999999999999999983332235679999999
Q ss_pred CCCCccceeEEEEEEEeecCCCC--ceeeeeEEEEeEecCCCCCC-CCcceeeecCCCCCCCC-----cHHhhh-----c
Q 044367 174 TNGPDSQGTIGSEQFNFETSDEG--KTFLYDVGFGCSHNNAHFSD-EQFTGVFGLGPATSSTH-----SLVEKV-----G 240 (450)
Q Consensus 174 g~gs~~~G~~~~D~v~~~~~~~~--~~~~~~~~fg~~~~~~~~~~-~~~~GIlGLg~~~~~~~-----sl~~ql-----~ 240 (450)
++|+.+.|.+++|+|+|++.... .....++.|||+....+.|. ...+||||||+.+.... .+.+|. .
T Consensus 82 ~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~ 161 (326)
T cd06096 82 SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLKKD 161 (326)
T ss_pred CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccccCC
Confidence 99987899999999999873210 01123578999998876553 35899999999843211 122332 2
Q ss_pred CceEEeecCCCCCCcccceEEecCCCc--------------CcceecccccCCCceEEEEeeEEECCEEeecCCcccccC
Q 044367 241 SKFSYCIGNLNYFEYAYNMLILGEGAI--------------LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKN 306 (450)
Q Consensus 241 ~~Fs~~l~~~~~~~~~~G~l~fG~~~d--------------~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~ 306 (450)
++||+||++. .|.|+||+.+. .++.|+|+ ....+|.|.+++|+|+++..... ..
T Consensus 162 ~~FS~~l~~~------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~-~~~~~y~v~l~~i~vg~~~~~~~-----~~ 229 (326)
T cd06096 162 KIFSICLSED------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPI-TRKYYYYVKLEGLSVYGTTSNSG-----NT 229 (326)
T ss_pred ceEEEEEcCC------CeEEEECccChhhhcccccccccccCCceEEec-cCCceEEEEEEEEEEccccccee-----cc
Confidence 7999999863 28899996442 34567887 44589999999999998861110 01
Q ss_pred CCcCCCceEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCC
Q 044367 307 DTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDA 386 (450)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 386 (450)
....+||||||++++||+++|++|.+++ |+|+|+|++|++++++|
T Consensus 230 ---~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 230 ---KGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred ---cCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECH
Confidence 1678999999999999999999987655 68999998789999999
Q ss_pred CceEEEeCCCeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCCC
Q 044367 387 ESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCE 445 (450)
Q Consensus 387 ~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c~ 445 (450)
++|++...+..+|+++.... +.+|||++|||++|+|||++++|||||+++|.
T Consensus 275 ~~y~~~~~~~~c~~~~~~~~-------~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 275 SSYLYKKESFWCKGGEKSVS-------NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHhccccCCceEEEEEecCC-------CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999876555666654432 35999999999999999999999999999994
No 5
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.8e-53 Score=412.36 Aligned_cols=288 Identities=36% Similarity=0.648 Sum_probs=232.9
Q ss_pred eEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCCC
Q 044367 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGP 177 (450)
Q Consensus 98 ~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~gs 177 (450)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|++|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------~~~~i~Yg~Gs 44 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------CLYQVSYGDGS 44 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------CeeeeEeCCCc
Confidence 599999999999999999999999999987654 27899999999
Q ss_pred ccceeEEEEEEEeecCCCCce-eeeeEEEEeEecCCCCCCCCcceeeecCCCCCCCCcHHhhh----cCceEEeecCCCC
Q 044367 178 DSQGTIGSEQFNFETSDEGKT-FLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKV----GSKFSYCIGNLNY 252 (450)
Q Consensus 178 ~~~G~~~~D~v~~~~~~~~~~-~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~~~sl~~ql----~~~Fs~~l~~~~~ 252 (450)
.++|.+++|+|+|++ . .++++.|||+....+.+. ..+||||||+. ..++++|+ +++||+||.+...
T Consensus 45 ~~~G~~~~D~v~ig~-----~~~~~~~~Fg~~~~~~~~~~-~~~GilGLg~~---~~s~~~ql~~~~~~~FS~~L~~~~~ 115 (299)
T cd05472 45 YTTGDLATDTLTLGS-----SDVVPGFAFGCGHDNEGLFG-GAAGLLGLGRG---KLSLPSQTASSYGGVFSYCLPDRSS 115 (299)
T ss_pred eEEEEEEEEEEEeCC-----CCccCCEEEECCccCCCccC-CCCEEEECCCC---cchHHHHhhHhhcCceEEEccCCCC
Confidence 779999999999998 5 788999999998876554 68999999999 88899887 5799999987431
Q ss_pred CCcccceEEecCCCc--CcceecccccC---CCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecch
Q 044367 253 FEYAYNMLILGEGAI--LEGDSTPMSVI---DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVP 327 (450)
Q Consensus 253 ~~~~~G~l~fG~~~d--~~~~~~pl~~~---~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~ 327 (450)
...|+|+||+.+. .++.|+|+... ..+|+|+|++|+||++.+..++... ....+||||||++++||+
T Consensus 116 --~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~------~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 116 --SSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF------GAGGVIIDSGTVITRLPP 187 (299)
T ss_pred --CCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc------CCCCeEEeCCCcceecCH
Confidence 2348999996554 36789998433 4699999999999999876542111 156799999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEe-CCCeEEEEEEeCC
Q 044367 328 SAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQE-SSSVFCLAVGPSD 406 (450)
Q Consensus 328 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~-~~~~~C~~~~~~~ 406 (450)
++|++|.+++.+..... ........+..|+...... ...+|+|+|+|++|++++|++++|++.. ..+..|+++....
T Consensus 188 ~~~~~l~~~l~~~~~~~-~~~~~~~~~~~C~~~~~~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~ 265 (299)
T cd05472 188 SAYAALRDAFRAAMAAY-PRAPGFSILDTCYDLSGFR-SVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTS 265 (299)
T ss_pred HHHHHHHHHHHHHhccC-CCCCCCCCCCccCcCCCCc-CCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCC
Confidence 99999999999876421 1111111133598643211 2579999999987899999999999943 3467899877653
Q ss_pred CCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCC
Q 044367 407 INGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDC 444 (450)
Q Consensus 407 ~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c 444 (450)
.. .+.+|||+.|||++|+|||++++|||||+++|
T Consensus 266 ~~----~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 266 DD----GGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CC----CCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 22 14699999999999999999999999999999
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=8.9e-54 Score=419.16 Aligned_cols=297 Identities=20% Similarity=0.333 Sum_probs=236.2
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCC----CCCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeE
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE----QCGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYN 170 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~----~C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~ 170 (450)
+.+|+++|.||||||++.|+|||||+++||+|..|. .|.. +.|+|++|+|++. .+|.|.
T Consensus 4 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~----------------~~~~~~ 67 (325)
T cd05490 4 DAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVK----------------NGTEFA 67 (325)
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceee----------------CCcEEE
Confidence 389999999999999999999999999999999997 4766 8999999999987 568999
Q ss_pred eeeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC---CCcHHhhh------
Q 044367 171 IRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS---THSLVEKV------ 239 (450)
Q Consensus 171 ~~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~---~~sl~~ql------ 239 (450)
+.|++|+ +.|.+++|+|+|++ ..++++.|||+++..+ .|. ...+||||||++..+ ..+++++|
T Consensus 68 i~Yg~G~-~~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i 141 (325)
T cd05490 68 IQYGSGS-LSGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLV 141 (325)
T ss_pred EEECCcE-EEEEEeeeEEEECC-----EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCC
Confidence 9999998 59999999999998 8899999999988765 232 358999999998433 23455554
Q ss_pred -cCceEEeecCCCCCCcccceEEecCCCcCc-----ceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCc
Q 044367 240 -GSKFSYCIGNLNYFEYAYNMLILGEGAILE-----GDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAG 313 (450)
Q Consensus 240 -~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~-----~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ 313 (450)
+++||+||.+.... ...|+|+||+ .|++ +.|.|+ ....+|.|++++|+||++..... ....
T Consensus 142 ~~~~FS~~L~~~~~~-~~~G~l~~Gg-~d~~~~~g~l~~~~~-~~~~~w~v~l~~i~vg~~~~~~~----------~~~~ 208 (325)
T cd05490 142 EQNVFSFYLNRDPDA-QPGGELMLGG-TDPKYYTGDLHYVNV-TRKAYWQIHMDQVDVGSGLTLCK----------GGCE 208 (325)
T ss_pred CCCEEEEEEeCCCCC-CCCCEEEECc-cCHHHcCCceEEEEc-CcceEEEEEeeEEEECCeeeecC----------CCCE
Confidence 57899999864322 1248899995 4444 455665 45689999999999998743221 1567
Q ss_pred eEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEe
Q 044367 314 VFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQE 393 (450)
Q Consensus 314 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~ 393 (450)
+||||||+++++|++++++|.+++++. . ...+.+.++|+. ...+|+|+|+|+ |++++|+|++|+++.
T Consensus 209 aiiDSGTt~~~~p~~~~~~l~~~~~~~-----~-~~~~~~~~~C~~------~~~~P~i~f~fg-g~~~~l~~~~y~~~~ 275 (325)
T cd05490 209 AIVDTGTSLITGPVEEVRALQKAIGAV-----P-LIQGEYMIDCEK------IPTLPVISFSLG-GKVYPLTGEDYILKV 275 (325)
T ss_pred EEECCCCccccCCHHHHHHHHHHhCCc-----c-ccCCCEEecccc------cccCCCEEEEEC-CEEEEEChHHeEEec
Confidence 999999999999999999999988642 1 112334789985 257899999997 999999999999975
Q ss_pred CC--CeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 394 SS--SVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 394 ~~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
.. ...|+. ++..... ....+.||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~-~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIP-PPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCC-CCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 43 457985 5443211 11124699999999999999999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.7e-53 Score=412.33 Aligned_cols=294 Identities=21% Similarity=0.353 Sum_probs=234.3
Q ss_pred EEEEEEECCCCceEEEEEECCCCceeEeCCCCC--CCCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCC
Q 044367 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE--QCGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTN 175 (450)
Q Consensus 99 Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~--~C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~ 175 (450)
|+++|+||||||+++|+|||||+++||+|..|. .|.. +.|||++|+|++. ..|.|.+.|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~----------------~~~~~~i~Yg~ 64 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVS----------------NGEAFSIQYGT 64 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCccccc----------------CCcEEEEEeCC
Confidence 899999999999999999999999999999998 4877 8999999999987 67899999999
Q ss_pred CCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC---CCcHHhhh-------cCce
Q 044367 176 GPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS---THSLVEKV-------GSKF 243 (450)
Q Consensus 176 gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~---~~sl~~ql-------~~~F 243 (450)
|+ +.|.+++|+|+|++ +.++++.|||+....+ .|. ...+||||||++..+ ..+++++| .++|
T Consensus 65 g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~F 138 (316)
T cd05486 65 GS-LTGIIGIDQVTVEG-----ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMF 138 (316)
T ss_pred cE-EEEEeeecEEEECC-----EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEE
Confidence 98 59999999999998 8999999999887654 232 358999999997432 12233333 4689
Q ss_pred EEeecCCCCCCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEecc
Q 044367 244 SYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSG 319 (450)
Q Consensus 244 s~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSG 319 (450)
|+||.+.... ...|+|+||+.+. .++.|+|+ ...++|.|++++|+|+++.+.... ...+|||||
T Consensus 139 S~~L~~~~~~-~~~g~l~fGg~d~~~~~g~l~~~pi-~~~~~w~v~l~~i~v~g~~~~~~~----------~~~aiiDTG 206 (316)
T cd05486 139 SVYMSRNPNS-ADGGELVFGGFDTSRFSGQLNWVPV-TVQGYWQIQLDNIQVGGTVIFCSD----------GCQAIVDTG 206 (316)
T ss_pred EEEEccCCCC-CCCcEEEEcccCHHHcccceEEEEC-CCceEEEEEeeEEEEecceEecCC----------CCEEEECCC
Confidence 9999864322 2348899995442 23567777 557899999999999998764321 567999999
Q ss_pred CceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEe--CCCe
Q 044367 320 TTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQE--SSSV 397 (450)
Q Consensus 320 Tt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~--~~~~ 397 (450)
|+++++|++++++|.+++++.. ..+.+.++|+. ...+|+|+|+|+ |++++|++++|++.. ..+.
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~-------~~~~~~~~C~~------~~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATA-------TDGEYGVDCST------LSLMPSVTFTIN-GIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcc-------cCCcEEEeccc------cccCCCEEEEEC-CEEEEeCHHHeEEecccCCCC
Confidence 9999999999999988775431 12334579975 257999999998 999999999999875 2356
Q ss_pred EEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 398 FCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 398 ~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
.|+. ++...... ..++.||||++|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~-~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPP-PAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCC-CCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 8975 54432111 1124699999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.4e-52 Score=407.85 Aligned_cols=297 Identities=23% Similarity=0.405 Sum_probs=240.3
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeee
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRY 173 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Y 173 (450)
..|+++|.||||||++.|+|||||+++||+|..|.. |.. +.|||++|+|++. ..|.|.+.|
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~----------------~~~~~~~~Y 65 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYST----------------NGETFSLQY 65 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceE----------------CCcEEEEEE
Confidence 689999999999999999999999999999999985 877 8999999999988 688999999
Q ss_pred CCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC-C-CCCcceeeecCCCCCC---CCcHHhhh-------cC
Q 044367 174 TNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF-S-DEQFTGVFGLGPATSS---THSLVEKV-------GS 241 (450)
Q Consensus 174 g~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GIlGLg~~~~~---~~sl~~ql-------~~ 241 (450)
++|+ +.|.+++|+|+|++ +.++++.|||++...+. + ....+||||||+++.+ ..++++|| .+
T Consensus 66 g~Gs-~~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~ 139 (318)
T cd05477 66 GSGS-LTGIFGYDTVTVQG-----IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAP 139 (318)
T ss_pred CCcE-EEEEEEeeEEEECC-----EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCC
Confidence 9998 59999999999998 89999999999986542 2 2357999999987432 45777776 47
Q ss_pred ceEEeecCCCCCCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEe
Q 044367 242 KFSYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317 (450)
Q Consensus 242 ~Fs~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiD 317 (450)
+||+||.+.... ..|+|+||+.+. .++.|+|+ ....+|.|++++|+|+++.+..... +..+|||
T Consensus 140 ~FS~~L~~~~~~--~~g~l~fGg~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~~---------~~~~iiD 207 (318)
T cd05477 140 IFSFYLSGQQGQ--QGGELVFGGVDNNLYTGQIYWTPV-TSETYWQIGIQGFQINGQATGWCSQ---------GCQAIVD 207 (318)
T ss_pred EEEEEEcCCCCC--CCCEEEEcccCHHHcCCceEEEec-CCceEEEEEeeEEEECCEEecccCC---------CceeeEC
Confidence 999999875322 238899995432 23567777 5578999999999999988753211 4579999
Q ss_pred ccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCe
Q 044367 318 SGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSV 397 (450)
Q Consensus 318 SGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~ 397 (450)
|||+++++|++++++|++++++.... ...+.++|+. ...+|.|+|+|+ |+++.||+++|+... ..
T Consensus 208 SGtt~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~C~~------~~~~p~l~~~f~-g~~~~v~~~~y~~~~--~~ 272 (318)
T cd05477 208 TGTSLLTAPQQVMSTLMQSIGAQQDQ------YGQYVVNCNN------IQNLPTLTFTIN-GVSFPLPPSAYILQN--NG 272 (318)
T ss_pred CCCccEECCHHHHHHHHHHhCCcccc------CCCEEEeCCc------cccCCcEEEEEC-CEEEEECHHHeEecC--CC
Confidence 99999999999999999998665321 2334688986 357899999998 899999999999875 45
Q ss_pred EEE-EEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 398 FCL-AVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 398 ~C~-~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
.|+ ++...........+.||||++|||++|+|||++++|||||++
T Consensus 273 ~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 273 YCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 786 565432111111246999999999999999999999999985
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-52 Score=406.96 Aligned_cols=290 Identities=19% Similarity=0.318 Sum_probs=237.8
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEee
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIR 172 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~ 172 (450)
+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. +.|||++|+|++. ..+.|.+.
T Consensus 8 ~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~----------------~~~~~~~~ 71 (317)
T cd05478 8 DMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQS----------------TGQPLSIQ 71 (317)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceee----------------CCcEEEEE
Confidence 4799999999999999999999999999999999985 766 9999999999998 57799999
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCC--CCcceeeecCCCCCC---CCcHHhhh-------c
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSD--EQFTGVFGLGPATSS---THSLVEKV-------G 240 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~~---~~sl~~ql-------~ 240 (450)
|++|+ +.|.+++|+|+|++ +.++++.|||++...+.+. ...+||||||+.+.+ ..++++|| .
T Consensus 72 yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 145 (317)
T cd05478 72 YGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQ 145 (317)
T ss_pred ECCce-EEEEEeeeEEEECC-----EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCC
Confidence 99999 59999999999998 8899999999988766442 248999999987432 23466665 4
Q ss_pred CceEEeecCCCCCCcccceEEecCCCcCc-----ceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceE
Q 044367 241 SKFSYCIGNLNYFEYAYNMLILGEGAILE-----GDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVF 315 (450)
Q Consensus 241 ~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~-----~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~i 315 (450)
++||+||.+... ..|+|+||+ .|.+ +.|+|+ ..+.+|.|.+++|+|+++.+.... +..+|
T Consensus 146 ~~FS~~L~~~~~---~~g~l~~Gg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~v~v~g~~~~~~~----------~~~~i 210 (317)
T cd05478 146 DLFSVYLSSNGQ---QGSVVTFGG-IDPSYYTGSLNWVPV-TAETYWQITVDSVTINGQVVACSG----------GCQAI 210 (317)
T ss_pred CEEEEEeCCCCC---CCeEEEEcc-cCHHHccCceEEEEC-CCCcEEEEEeeEEEECCEEEccCC----------CCEEE
Confidence 799999987542 238899995 4443 456666 457899999999999999875431 56799
Q ss_pred EeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCC
Q 044367 316 IDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESS 395 (450)
Q Consensus 316 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~ 395 (450)
|||||+++++|++++++|++++++... ....+.++|+. ...+|.|+|+|+ |++++||+++|+.+.
T Consensus 211 iDTGts~~~lp~~~~~~l~~~~~~~~~------~~~~~~~~C~~------~~~~P~~~f~f~-g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 211 VDTGTSLLVGPSSDIANIQSDIGASQN------QNGEMVVNCSS------ISSMPDVVFTIN-GVQYPLPPSAYILQD-- 275 (317)
T ss_pred ECCCchhhhCCHHHHHHHHHHhCCccc------cCCcEEeCCcC------cccCCcEEEEEC-CEEEEECHHHheecC--
Confidence 999999999999999999998865421 12233579975 257899999997 999999999999865
Q ss_pred CeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 396 SVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 396 ~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
...|+..+...+. .+.||||++|||++|+|||++++|||||+
T Consensus 276 ~~~C~~~~~~~~~----~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 QGSCTSGFQSMGL----GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCEEeEEEEeCCC----CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 5689864433322 13599999999999999999999999996
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.7e-52 Score=406.86 Aligned_cols=297 Identities=20% Similarity=0.356 Sum_probs=235.9
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC----CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeE
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ----CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYN 170 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~----C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~ 170 (450)
+..|+++|+||||+|+++|++||||+++||++..|.. |.. +.|+|++|+|++. ..|.|.
T Consensus 6 ~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~----------------~~~~~~ 69 (326)
T cd05487 6 DTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKE----------------NGTEFT 69 (326)
T ss_pred CCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeE----------------CCEEEE
Confidence 3899999999999999999999999999999988874 655 8999999999998 678999
Q ss_pred eeeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC---CC----cHHhh--h
Q 044367 171 IRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS---TH----SLVEK--V 239 (450)
Q Consensus 171 ~~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~---~~----sl~~q--l 239 (450)
+.|++|+ +.|.+++|+|+|++ ..+ ++.||++..... .+. ...+||||||+++.+ .. +|++| +
T Consensus 70 ~~Yg~g~-~~G~~~~D~v~~g~-----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i 142 (326)
T cd05487 70 IHYASGT-VKGFLSQDIVTVGG-----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVL 142 (326)
T ss_pred EEeCCce-EEEEEeeeEEEECC-----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCC
Confidence 9999998 69999999999998 666 478999987542 222 358999999987332 12 34555 2
Q ss_pred -cCceEEeecCCCCCCcccceEEecCCCcCcceeccc----ccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCce
Q 044367 240 -GSKFSYCIGNLNYFEYAYNMLILGEGAILEGDSTPM----SVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGV 314 (450)
Q Consensus 240 -~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~~~~~pl----~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~ 314 (450)
.++||+||.+.+.. ...|+|+|| +.|++++.+++ .....+|+|++++|+|+++.+.... +..+
T Consensus 143 ~~~~FS~~L~~~~~~-~~~G~l~fG-g~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~----------~~~a 210 (326)
T cd05487 143 KEDVFSVYYSRDSSH-SLGGEIVLG-GSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCED----------GCTA 210 (326)
T ss_pred CCCEEEEEEeCCCCC-CCCcEEEEC-CcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCC----------CCEE
Confidence 67999999875421 234899999 55555554444 1457899999999999998765421 5679
Q ss_pred EEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeC
Q 044367 315 FIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQES 394 (450)
Q Consensus 315 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~ 394 (450)
||||||+++++|+++++++++++++... ...+.++|+. ...+|.|+|+|+ |.+++|++++|+++..
T Consensus 211 iiDSGts~~~lP~~~~~~l~~~~~~~~~-------~~~y~~~C~~------~~~~P~i~f~fg-g~~~~v~~~~yi~~~~ 276 (326)
T cd05487 211 VVDTGASFISGPTSSISKLMEALGAKER-------LGDYVVKCNE------VPTLPDISFHLG-GKEYTLSSSDYVLQDS 276 (326)
T ss_pred EECCCccchhCcHHHHHHHHHHhCCccc-------CCCEEEeccc------cCCCCCEEEEEC-CEEEEeCHHHhEEecc
Confidence 9999999999999999999999865421 2334689986 256899999997 8999999999999865
Q ss_pred C--CeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 395 S--SVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 395 ~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
+ +..|+. +...... ...++.||||++|||++|+|||++++|||||++
T Consensus 277 ~~~~~~C~~~~~~~~~~-~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 277 DFSDKLCTVAFHAMDIP-PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCEEEEEEEeCCCC-CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 4 567874 5543321 111246999999999999999999999999985
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-51 Score=402.63 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=228.6
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCC---CCCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEe
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE---QCGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNI 171 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~---~C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~ 171 (450)
+.+|+++|.||||+|+++|+|||||+++||+|..|. .|.. +.|||++|+|++. ....+.+
T Consensus 8 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~----------------~~~~~~i 71 (317)
T cd06098 8 DAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKK----------------NGTSASI 71 (317)
T ss_pred CCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCccc----------------CCCEEEE
Confidence 479999999999999999999999999999999996 5987 8999999999987 5668999
Q ss_pred eeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC---CC----cHHhh--h-
Q 044367 172 RYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS---TH----SLVEK--V- 239 (450)
Q Consensus 172 ~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~---~~----sl~~q--l- 239 (450)
.|++|+ +.|.+++|+|+|++ ..++++.||+++...+ .|. ...+||||||+...+ .. ++++| +
T Consensus 72 ~Yg~G~-~~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~ 145 (317)
T cd06098 72 QYGTGS-ISGFFSQDSVTVGD-----LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVK 145 (317)
T ss_pred EcCCce-EEEEEEeeEEEECC-----EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCC
Confidence 999998 59999999999998 8999999999987654 222 358999999997432 12 23444 2
Q ss_pred cCceEEeecCCCCCCcccceEEecCCCcCc-----ceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCce
Q 044367 240 GSKFSYCIGNLNYFEYAYNMLILGEGAILE-----GDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGV 314 (450)
Q Consensus 240 ~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~-----~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~ 314 (450)
.++||+||.+.... ...|+|+||+ .|++ +.|+|+ ...++|.|.+++|+|+++.+..... ...+
T Consensus 146 ~~~FS~~L~~~~~~-~~~G~l~fGg-~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~~---------~~~a 213 (317)
T cd06098 146 EPVFSFWLNRNPDE-EEGGELVFGG-VDPKHFKGEHTYVPV-TRKGYWQFEMGDVLIGGKSTGFCAG---------GCAA 213 (317)
T ss_pred CCEEEEEEecCCCC-CCCcEEEECc-cChhhcccceEEEec-CcCcEEEEEeCeEEECCEEeeecCC---------CcEE
Confidence 56999999864321 2348999995 5443 457777 4578999999999999988654311 5679
Q ss_pred EEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeC
Q 044367 315 FIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQES 394 (450)
Q Consensus 315 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~ 394 (450)
||||||+++++|+++++++. +.++|+. ...+|+|+|+|+ |+.++|++++|+++..
T Consensus 214 ivDTGTs~~~lP~~~~~~i~------------------~~~~C~~------~~~~P~i~f~f~-g~~~~l~~~~yi~~~~ 268 (317)
T cd06098 214 IADSGTSLLAGPTTIVTQIN------------------SAVDCNS------LSSMPNVSFTIG-GKTFELTPEQYILKVG 268 (317)
T ss_pred EEecCCcceeCCHHHHHhhh------------------ccCCccc------cccCCcEEEEEC-CEEEEEChHHeEEeec
Confidence 99999999999998776653 1378975 257899999997 8999999999998754
Q ss_pred C--CeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 395 S--SVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 395 ~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
+ ...|+. ++..... ...++.||||+.|||++|+|||++++|||||+
T Consensus 269 ~~~~~~C~~~~~~~~~~-~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 269 EGAAAQCISGFTALDVP-PPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCEEeceEEECCCC-CCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 3 458975 4433211 11124699999999999999999999999996
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.4e-51 Score=403.63 Aligned_cols=297 Identities=21% Similarity=0.339 Sum_probs=237.3
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCC----CCCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeE
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCE----QCGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYN 170 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~----~C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~ 170 (450)
+.+|+++|.||||+|++.|++||||+++||+|..|. .|.. +.|||++|+|++. ..|.|.
T Consensus 9 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~----------------~~~~~~ 72 (329)
T cd05485 9 DAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKK----------------NGTEFA 72 (329)
T ss_pred CCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEE----------------CCeEEE
Confidence 379999999999999999999999999999999997 4765 7899999999998 678999
Q ss_pred eeeCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC-CC-CCcceeeecCCCCCC---CCcHHhhh------
Q 044367 171 IRYTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF-SD-EQFTGVFGLGPATSS---THSLVEKV------ 239 (450)
Q Consensus 171 ~~Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GIlGLg~~~~~---~~sl~~ql------ 239 (450)
+.|++|+ +.|.+++|+|+|++ ..++++.|||+.+..+. +. ...+||||||+++.+ ..+++.||
T Consensus 73 i~Y~~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i 146 (329)
T cd05485 73 IQYGSGS-LSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLV 146 (329)
T ss_pred EEECCce-EEEEEecCcEEECC-----EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCC
Confidence 9999998 69999999999998 88999999999876542 32 348999999998432 12233443
Q ss_pred -cCceEEeecCCCCCCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCce
Q 044367 240 -GSKFSYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGV 314 (450)
Q Consensus 240 -~~~Fs~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~ 314 (450)
.++||+||.+.... ...|+|+||+.+. .++.|+|+ ...++|.|++++|+++++.+... +..+
T Consensus 147 ~~~~FS~~l~~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~~~~i~v~~~~~~~~-----------~~~~ 213 (329)
T cd05485 147 DAPVFSFYLNRDPSA-KEGGELILGGSDPKHYTGNFTYLPV-TRKGYWQFKMDSVSVGEGEFCSG-----------GCQA 213 (329)
T ss_pred CCCEEEEEecCCCCC-CCCcEEEEcccCHHHcccceEEEEc-CCceEEEEEeeEEEECCeeecCC-----------CcEE
Confidence 57999999875432 2348999995432 23467777 55789999999999999876421 5679
Q ss_pred EEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeC
Q 044367 315 FIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQES 394 (450)
Q Consensus 315 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~ 394 (450)
||||||+++++|++++++|.+++++.. .....+.++|+. ...+|+|+|+|+ |+++.|++++|+++..
T Consensus 214 iiDSGtt~~~lP~~~~~~l~~~~~~~~------~~~~~~~~~C~~------~~~~p~i~f~fg-g~~~~i~~~~yi~~~~ 280 (329)
T cd05485 214 IADTGTSLIAGPVDEIEKLNNAIGAKP------IIGGEYMVNCSA------IPSLPDITFVLG-GKSFSLTGKDYVLKVT 280 (329)
T ss_pred EEccCCcceeCCHHHHHHHHHHhCCcc------ccCCcEEEeccc------cccCCcEEEEEC-CEEeEEChHHeEEEec
Confidence 999999999999999999998886431 112334689985 256899999998 8999999999999865
Q ss_pred C--CeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 395 S--SVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 395 ~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
. ...|+. ++..... ...++.||||++|||++|+|||++++|||||+
T Consensus 281 ~~~~~~C~~~~~~~~~~-~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 281 QMGQTICLSGFMGIDIP-PPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCEEeeeEEECcCC-CCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 3 467985 5543211 11124699999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4e-51 Score=399.24 Aligned_cols=294 Identities=22% Similarity=0.369 Sum_probs=235.7
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEee
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIR 172 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~ 172 (450)
+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. +.|+|++|+|++. +.|.|.+.
T Consensus 8 ~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~----------------~~~~~~~~ 71 (320)
T cd05488 8 NAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKA----------------NGTEFKIQ 71 (320)
T ss_pred CCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceee----------------CCCEEEEE
Confidence 3789999999999999999999999999999999984 876 8999999999987 68899999
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC-CC-CCcceeeecCCCCCCCC-------cHHhh--h-c
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF-SD-EQFTGVFGLGPATSSTH-------SLVEK--V-G 240 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GIlGLg~~~~~~~-------sl~~q--l-~ 240 (450)
|++|+ +.|.+++|+|+|++ +.++++.|||++...+. +. ...+||||||+.+.+.. ++.+| + .
T Consensus 72 y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~ 145 (320)
T cd05488 72 YGSGS-LEGFVSQDTLSIGD-----LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDE 145 (320)
T ss_pred ECCce-EEEEEEEeEEEECC-----EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence 99998 59999999999988 88999999999877653 22 24799999999843211 22233 2 5
Q ss_pred CceEEeecCCCCCCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEE
Q 044367 241 SKFSYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFI 316 (450)
Q Consensus 241 ~~Fs~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~ii 316 (450)
++||+||.+... ..|.|+||+.+. .++.|+|+ ....+|.|++++|+||++.+... ...++|
T Consensus 146 ~~FS~~L~~~~~---~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~vg~~~~~~~-----------~~~~iv 210 (320)
T cd05488 146 PVFSFYLGSSEE---DGGEATFGGIDESRFTGKITWLPV-RRKAYWEVELEKIGLGDEELELE-----------NTGAAI 210 (320)
T ss_pred CEEEEEecCCCC---CCcEEEECCcCHHHcCCceEEEeC-CcCcEEEEEeCeEEECCEEeccC-----------CCeEEE
Confidence 799999997532 348899995432 24567777 45689999999999999877543 567999
Q ss_pred eccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCC
Q 044367 317 DSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSS 396 (450)
Q Consensus 317 DSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~ 396 (450)
||||++++||++++++|.+++++... ....+.++|+. ...+|.|+|+|+ |+++.||+++|+++. .
T Consensus 211 DSGtt~~~lp~~~~~~l~~~~~~~~~------~~~~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~~~~--~ 275 (320)
T cd05488 211 DTGTSLIALPSDLAEMLNAEIGAKKS------WNGQYTVDCSK------VDSLPDLTFNFD-GYNFTLGPFDYTLEV--S 275 (320)
T ss_pred cCCcccccCCHHHHHHHHHHhCCccc------cCCcEEeeccc------cccCCCEEEEEC-CEEEEECHHHheecC--C
Confidence 99999999999999999988854321 12334578975 257899999998 899999999999854 3
Q ss_pred eEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 397 VFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 397 ~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
..|+..+...+.....++.||||+.|||++|+|||.+++|||||+
T Consensus 276 g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 276 GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 479865443221111124699999999999999999999999996
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.8e-50 Score=403.55 Aligned_cols=289 Identities=20% Similarity=0.320 Sum_probs=229.4
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEee
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIR 172 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~ 172 (450)
+.+|+++|+||||||++.|+|||||+++||+|..|.. |.. +.|||++|+|++. .++.|.+.
T Consensus 137 n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~----------------~~~~f~i~ 200 (453)
T PTZ00147 137 NVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEK----------------DGTKVEMN 200 (453)
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEE----------------CCCEEEEE
Confidence 3799999999999999999999999999999999985 776 8999999999988 67899999
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC---CC-CCcceeeecCCCCCC---CCcHHhhh------
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF---SD-EQFTGVFGLGPATSS---THSLVEKV------ 239 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~---~~-~~~~GIlGLg~~~~~---~~sl~~ql------ 239 (450)
|++|+ +.|.+++|+|+|++ ..++ ..|+++.+..+. +. ...+||||||++..+ ..+++.+|
T Consensus 201 Yg~Gs-vsG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I 273 (453)
T PTZ00147 201 YVSGT-VSGFFSKDLVTIGN-----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKI 273 (453)
T ss_pred eCCCC-EEEEEEEEEEEECC-----EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCC
Confidence 99998 59999999999998 7777 579988876542 12 248999999998432 12344443
Q ss_pred -cCceEEeecCCCCCCcccceEEecCCCcCc-----ceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCc
Q 044367 240 -GSKFSYCIGNLNYFEYAYNMLILGEGAILE-----GDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAG 313 (450)
Q Consensus 240 -~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~-----~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ 313 (450)
.++||+||++... ..|.|+||+ +|++ +.|.|+ ....+|.|.++ +.+++... . ...
T Consensus 274 ~~~vFS~~L~~~~~---~~G~L~fGG-iD~~ky~G~l~y~pl-~~~~~W~V~l~-~~vg~~~~--~-----------~~~ 334 (453)
T PTZ00147 274 EQAVFTFYLPPEDK---HKGYLTIGG-IEERFYEGPLTYEKL-NHDLYWQVDLD-VHFGNVSS--E-----------KAN 334 (453)
T ss_pred CccEEEEEecCCCC---CCeEEEECC-cChhhcCCceEEEEc-CCCceEEEEEE-EEECCEec--C-----------cee
Confidence 5689999986432 348999995 5544 456666 55789999998 57776431 1 567
Q ss_pred eEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEe
Q 044367 314 VFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQE 393 (450)
Q Consensus 314 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~ 393 (450)
+||||||+++++|+++++++.+++++... + ..+.+.++|+. ..+|+|+|+|+ |..++|+|++|+.+.
T Consensus 335 aIiDSGTsli~lP~~~~~ai~~~l~~~~~---~--~~~~y~~~C~~-------~~lP~~~f~f~-g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 335 VIVDSGTSVITVPTEFLNKFVESLDVFKV---P--FLPLYVTTCNN-------TKLPTLEFRSP-NKVYTLEPEYYLQPI 401 (453)
T ss_pred EEECCCCchhcCCHHHHHHHHHHhCCeec---C--CCCeEEEeCCC-------CCCCeEEEEEC-CEEEEECHHHheecc
Confidence 99999999999999999999998854311 1 11223578985 57899999998 899999999999764
Q ss_pred CC--CeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCC
Q 044367 394 SS--SVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRID 443 (450)
Q Consensus 394 ~~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~ 443 (450)
.+ ...|+. ++..... .+.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~----~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLE----KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCC----CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 33 457975 6554322 1359999999999999999999999999986
No 15
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.9e-50 Score=397.05 Aligned_cols=314 Identities=23% Similarity=0.397 Sum_probs=245.6
Q ss_pred ECCCCce-EEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCC----C------------CCCCCCCCc
Q 044367 105 IGQPPVP-QLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCT----N------------DCGGYPDEC 167 (450)
Q Consensus 105 iGtP~q~-~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~----~------------~c~~~~~~~ 167 (450)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|. . .|. ++.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-----------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~--~~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-----------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCG--NNTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-----------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCC--CCcC
Confidence 6888777 999999999999999985 46889999999999998 1 232 3458
Q ss_pred eeEee-eCCCCccceeEEEEEEEeecCCCCc---eeeeeEEEEeEecCCC-CCCCCcceeeecCCCCCCCCcHHhhh---
Q 044367 168 WYNIR-YTNGPDSQGTIGSEQFNFETSDEGK---TFLYDVGFGCSHNNAH-FSDEQFTGVFGLGPATSSTHSLVEKV--- 239 (450)
Q Consensus 168 ~~~~~-Yg~gs~~~G~~~~D~v~~~~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GIlGLg~~~~~~~sl~~ql--- 239 (450)
.|... |++|+.+.|++++|+|+|+..+++. ..++++.|||+.+... .+...++||||||++ ..|++.||
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~---~lSl~sql~~~ 145 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRS---PLSLPAQLASA 145 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCC---ccchHHHhhhh
Confidence 88665 7799888999999999998644332 3788999999988642 233358999999999 99999997
Q ss_pred ---cCceEEeecCCCCCCcccceEEecCCCc----------CcceecccccC---CCceEEEEeeEEECCEEeecCCccc
Q 044367 240 ---GSKFSYCIGNLNYFEYAYNMLILGEGAI----------LEGDSTPMSVI---DGSYYVTLEGISLGEKMLDIDPNLF 303 (450)
Q Consensus 240 ---~~~Fs~~l~~~~~~~~~~G~l~fG~~~d----------~~~~~~pl~~~---~~~~~v~l~~i~vg~~~~~~~~~~~ 303 (450)
.++|||||.+... ..|.|+||+.+. ..+.|+||... ..+|+|+|++|+||++.+.+++..+
T Consensus 146 ~~~~~~FS~CL~~~~~---~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~ 222 (362)
T cd05489 146 FGVARKFALCLPSSPG---GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLS 222 (362)
T ss_pred cCCCcceEEEeCCCCC---CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhc
Confidence 2689999987532 348999996542 45689999433 4799999999999999998765544
Q ss_pred ccCCCcCCCceEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCC-ccccccCccC---CcccCCCeEEEEecC-
Q 044367 304 KKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPA-WHLCYSGNIN---RDLQGFPAMAFHFAG- 378 (450)
Q Consensus 304 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~---~~~~~~P~i~f~f~g- 378 (450)
.... .+..++||||||++++||+++|++|.+++.+++... +....... ...|+..... .....+|+|+|+|+|
T Consensus 223 ~~~~-~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 223 ANDR-LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARI-PRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred cccc-cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhccc-CcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCC
Confidence 2110 015689999999999999999999999999887532 22111111 3689864311 113579999999996
Q ss_pred CCEEEeCCCceEEEeCCCeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 379 GADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 379 g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
|++++|++++|+++..++..|+++....... ++.||||+.|||++|++||++++|||||+.
T Consensus 301 g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~---~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQVKGGVACLAFVDGGSEP---RPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEcCCCcEEEEEeeCCCCC---CceEEEeeheecceEEEEECCCCEeecccC
Confidence 7999999999999987778999988765321 146999999999999999999999999975
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.1e-50 Score=400.79 Aligned_cols=289 Identities=20% Similarity=0.340 Sum_probs=228.3
Q ss_pred cceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC--CCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEee
Q 044367 96 VPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ--CGA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIR 172 (450)
Q Consensus 96 ~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~--C~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~ 172 (450)
+.+|+++|.||||+|++.|+|||||+++||+|..|.. |.. +.|||++|+|++. ..+.+.+.
T Consensus 136 n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~----------------~~~~~~i~ 199 (450)
T PTZ00013 136 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEK----------------DGTKVDIT 199 (450)
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCccccc----------------CCcEEEEE
Confidence 4799999999999999999999999999999999974 877 8999999999987 67899999
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC---CC-CCcceeeecCCCCCC---CCcHHhhh------
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF---SD-EQFTGVFGLGPATSS---THSLVEKV------ 239 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~---~~-~~~~GIlGLg~~~~~---~~sl~~ql------ 239 (450)
|++|+ +.|.+++|+|+|++ ++++ ..|+++.+..+. +. ..++||||||++..+ ..+++.||
T Consensus 200 YG~Gs-v~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I 272 (450)
T PTZ00013 200 YGSGT-VKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKI 272 (450)
T ss_pred ECCce-EEEEEEEEEEEECC-----EEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCc
Confidence 99998 69999999999998 7776 578888765421 22 248999999998443 23455554
Q ss_pred -cCceEEeecCCCCCCcccceEEecCCCcCcc-----eecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCc
Q 044367 240 -GSKFSYCIGNLNYFEYAYNMLILGEGAILEG-----DSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAG 313 (450)
Q Consensus 240 -~~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~~-----~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ 313 (450)
.++||+||++... ..|.|+||| +|+++ .|+|+ ....+|.|+++ +.+|..... ...
T Consensus 273 ~~~vFS~~L~~~~~---~~G~L~fGG-iD~~~y~G~L~y~pv-~~~~yW~I~l~-v~~G~~~~~-------------~~~ 333 (450)
T PTZ00013 273 DNALFTFYLPVHDV---HAGYLTIGG-IEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTMQ-------------KAN 333 (450)
T ss_pred CCcEEEEEecCCCC---CCCEEEECC-cCccccccceEEEEc-CcCceEEEEEE-EEECceecc-------------ccc
Confidence 5689999986432 248899995 55444 56666 55789999998 667654321 567
Q ss_pred eEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEe
Q 044367 314 VFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQE 393 (450)
Q Consensus 314 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~ 393 (450)
+||||||+++++|+++++++.++++.... . ..+.+..+|+. ..+|+|+|+|+ |.+++|+|++|+.+.
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~~~~~---~--~~~~y~~~C~~-------~~lP~i~F~~~-g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLNVIKV---P--FLPFYVTTCDN-------KEMPTLEFKSA-NNTYTLEPEYYMNPL 400 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhCCeec---C--CCCeEEeecCC-------CCCCeEEEEEC-CEEEEECHHHheehh
Confidence 99999999999999999999988864321 1 11224678975 57899999998 899999999998753
Q ss_pred C--CCeEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCC
Q 044367 394 S--SSVFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRID 443 (450)
Q Consensus 394 ~--~~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~ 443 (450)
. ++..|+. +.+.... .+.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~----~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDID----DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCC----CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2 3568974 5443321 1369999999999999999999999999875
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-49 Score=395.86 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=233.7
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNG 176 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~g 176 (450)
..|+++|.||||+|++.|+|||||+++||+|..|..|. +.|||++|+|++. ..|.|.+.|++|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~-~~f~~~~SsT~~~----------------~~~~~~i~Yg~G 64 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFIH-TYFHRELSSTYRD----------------LGKGVTVPYTQG 64 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcccc-ccCCchhCcCccc----------------CCceEEEEECcc
Confidence 47999999999999999999999999999998884332 6899999999998 578999999999
Q ss_pred CccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCC--CCcceeeecCCCCCC-----CC----cHHhhh--cCce
Q 044367 177 PDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSD--EQFTGVFGLGPATSS-----TH----SLVEKV--GSKF 243 (450)
Q Consensus 177 s~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~~-----~~----sl~~ql--~~~F 243 (450)
+. .|.+++|+|+|++.. ...+ .+.|+++....+.+. ...+||||||++..+ .. ++++|. .++|
T Consensus 65 s~-~G~~~~D~v~ig~~~--~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~F 140 (364)
T cd05473 65 SW-EGELGTDLVSIPKGP--NVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVF 140 (364)
T ss_pred eE-EEEEEEEEEEECCCC--ccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccce
Confidence 85 999999999998521 0111 234566665554432 247999999998442 12 455553 4689
Q ss_pred EEeecCC----CC--CCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCc
Q 044367 244 SYCIGNL----NY--FEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAG 313 (450)
Q Consensus 244 s~~l~~~----~~--~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ 313 (450)
|+||... +. .....|.|+||+.+. .++.|+|+ ....+|.|.+++|+|+++.+..+...+. ...
T Consensus 141 S~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~-~~~~~~~v~l~~i~vg~~~~~~~~~~~~------~~~ 213 (364)
T cd05473 141 SLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPI-REEWYYEVIILKLEVGGQSLNLDCKEYN------YDK 213 (364)
T ss_pred EEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEec-CcceeEEEEEEEEEECCEeccccccccc------Ccc
Confidence 9987531 10 112358999995432 23568888 4567999999999999998875432221 246
Q ss_pred eEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCC---CccccccCccCCcccCCCeEEEEecCC-----CEEEeC
Q 044367 314 VFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDP---AWHLCYSGNINRDLQGFPAMAFHFAGG-----ADLVLD 385 (450)
Q Consensus 314 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~C~~~~~~~~~~~~P~i~f~f~gg-----~~~~l~ 385 (450)
+||||||++++||+++|++|+++++++... ...+... ..++|+..... ....+|+|+|+|+|+ .++.|+
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~C~~~~~~-~~~~~P~i~~~f~g~~~~~~~~l~l~ 290 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLI--EDFPDGFWLGSQLACWQKGTT-PWEIFPKISIYLRDENSSQSFRITIL 290 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhccc--ccCCccccCcceeecccccCc-hHhhCCcEEEEEccCCCCceEEEEEC
Confidence 999999999999999999999999887532 1111111 13689863211 124699999999842 478999
Q ss_pred CCceEEEeCC---CeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCCCCcc
Q 044367 386 AESVFYQESS---SVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDCELLA 448 (450)
Q Consensus 386 ~~~y~~~~~~---~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c~~~~ 448 (450)
|++|+..... +..|+++...... +.||||+.|||++|+|||++++|||||+++|.+..
T Consensus 291 p~~Y~~~~~~~~~~~~C~~~~~~~~~-----~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 291 PQLYLRPVEDHGTQLDCYKFAISQST-----NGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred HHHhhhhhccCCCcceeeEEeeecCC-----CceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 9999886432 4689764322211 35999999999999999999999999999998753
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.7e-49 Score=376.28 Aligned_cols=252 Identities=42% Similarity=0.712 Sum_probs=213.0
Q ss_pred eEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCCC
Q 044367 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGP 177 (450)
Q Consensus 98 ~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~gs 177 (450)
+|+++|+||||+|++.|+|||||+++||+| | .|.+.|++|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~-------------------------------------~~~~~Y~dg~ 41 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C-------------------------------------SYEYSYGDGS 41 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C-------------------------------------ceEeEeCCCc
Confidence 599999999999999999999999999986 2 6789999988
Q ss_pred ccceeEEEEEEEeecCCCCce--eeeeEEEEeEecCCCCCCCCcceeeecCCCCCCCCcHHhhh---cCceEEeecCCCC
Q 044367 178 DSQGTIGSEQFNFETSDEGKT--FLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKV---GSKFSYCIGNLNY 252 (450)
Q Consensus 178 ~~~G~~~~D~v~~~~~~~~~~--~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~~~sl~~ql---~~~Fs~~l~~~~~ 252 (450)
.++|.+++|+|+|++ . .++++.|||+....+......+||||||+. ..|+++|| +++||+||.+...
T Consensus 42 ~~~G~~~~D~v~~g~-----~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~---~~s~~~ql~~~~~~Fs~~l~~~~~ 113 (265)
T cd05476 42 STSGVLATETFTFGD-----SSVSVPNVAFGCGTDNEGGSFGGADGILGLGRG---PLSLVSQLGSTGNKFSYCLVPHDD 113 (265)
T ss_pred eeeeeEEEEEEEecC-----CCCccCCEEEEecccccCCccCCCCEEEECCCC---cccHHHHhhcccCeeEEEccCCCC
Confidence 889999999999998 5 789999999998876333469999999999 88999998 3499999987531
Q ss_pred CCcccceEEecCCCc---CcceecccccC---CCceEEEEeeEEECCEEeecCCcccc--cCCCcCCCceEEeccCceee
Q 044367 253 FEYAYNMLILGEGAI---LEGDSTPMSVI---DGSYYVTLEGISLGEKMLDIDPNLFK--KNDTWSDAGVFIDSGTTLTW 324 (450)
Q Consensus 253 ~~~~~G~l~fG~~~d---~~~~~~pl~~~---~~~~~v~l~~i~vg~~~~~~~~~~~~--~~~~~~~~~~iiDSGTt~~~ 324 (450)
....|+|+||+.+. .++.|+|+... ..+|.|++++|+|+++.+.++...+. ... ...+||||||++++
T Consensus 114 -~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~---~~~ai~DTGTs~~~ 189 (265)
T cd05476 114 -TGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG---SGGTIIDSGTTLTY 189 (265)
T ss_pred -CCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC---CCcEEEeCCCcceE
Confidence 12348999996554 46789998543 68999999999999998875433221 112 67899999999999
Q ss_pred cchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCeEEEEEEe
Q 044367 325 LVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGP 404 (450)
Q Consensus 325 lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~ 404 (450)
||+++| |+|+|+|++|.++.+++++|++....+..|+++..
T Consensus 190 lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~ 230 (265)
T cd05476 190 LPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILS 230 (265)
T ss_pred cCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEec
Confidence 998776 68999998789999999999997767789998876
Q ss_pred CCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCC
Q 044367 405 SDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDC 444 (450)
Q Consensus 405 ~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c 444 (450)
.... +.||||++|||++|++||++++|||||+++|
T Consensus 231 ~~~~-----~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 231 SSSG-----GVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCC-----CcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 5322 4699999999999999999999999999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.2e-49 Score=376.31 Aligned_cols=256 Identities=27% Similarity=0.493 Sum_probs=209.5
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCC-CCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQ-PCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTN 175 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~-~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~ 175 (450)
++|+++|.||||||++.|++||||+++||+|. +|..| .|.|.+.|+|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------~c~~~i~Ygd 48 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------QCDYEIEYAD 48 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------cCccEeEeCC
Confidence 47999999999999999999999999999984 56555 3479999998
Q ss_pred CCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCC---CCCcceeeecCCCCCCCCcHHhhh------cCceEEe
Q 044367 176 GPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFS---DEQFTGVFGLGPATSSTHSLVEKV------GSKFSYC 246 (450)
Q Consensus 176 gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GIlGLg~~~~~~~sl~~ql------~~~Fs~~ 246 (450)
|+.++|.+++|+|+|+..++ ...++++.|||+....+.+ ....+||||||+. ..++++|| +++||+|
T Consensus 49 ~~~~~G~~~~D~v~~~~~~~-~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~---~~s~~~ql~~~~~i~~~Fs~~ 124 (273)
T cd05475 49 GGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRG---KISLPSQLASQGIIKNVIGHC 124 (273)
T ss_pred CCceEEEEEEEEEEEeecCC-CcccCCEEEEeeeccCCcccCCCccCCEEEECCCC---CCCHHHHHHhcCCcCceEEEE
Confidence 87789999999999975322 2467899999998766432 1358999999999 88999997 3689999
Q ss_pred ecCCCCCCcccceEEecCCC--cCcceecccccC--CCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCce
Q 044367 247 IGNLNYFEYAYNMLILGEGA--ILEGDSTPMSVI--DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTL 322 (450)
Q Consensus 247 l~~~~~~~~~~G~l~fG~~~--d~~~~~~pl~~~--~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~ 322 (450)
|++. +.|.|+||+.. ..++.|+|+... ..+|.|++.+|+||++..... ...+||||||++
T Consensus 125 l~~~-----~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~-----------~~~~ivDTGTt~ 188 (273)
T cd05475 125 LSSN-----GGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGK-----------GLEVVFDSGSSY 188 (273)
T ss_pred ccCC-----CCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCC-----------CceEEEECCCce
Confidence 9862 23889999432 235789998433 479999999999999853211 568999999999
Q ss_pred eecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCC---CEEEeCCCceEEEeCCCeEE
Q 044367 323 TWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGG---ADLVLDAESVFYQESSSVFC 399 (450)
Q Consensus 323 ~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg---~~~~l~~~~y~~~~~~~~~C 399 (450)
++||+++| +|+|+|+|+++ ++++||+++|++....+..|
T Consensus 189 t~lp~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~C 230 (273)
T cd05475 189 TYFNAQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVC 230 (273)
T ss_pred EEcCCccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEE
Confidence 99998765 46899999843 79999999999987667789
Q ss_pred EEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcCCC
Q 044367 400 LAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRIDC 444 (450)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~~c 444 (450)
++++....... ++.||||+.|||++|+|||++++|||||+++|
T Consensus 231 l~~~~~~~~~~--~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 231 LGILNGSEIGL--GNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEecCCCcCC--CceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99876543211 24699999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=9.5e-48 Score=368.30 Aligned_cols=258 Identities=21% Similarity=0.282 Sum_probs=209.9
Q ss_pred EEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCC---CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCC
Q 044367 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA---TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTN 175 (450)
Q Consensus 99 Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~ 175 (450)
|+++|+||||+|++.|+|||||+++||+|..|..|.. +.|++++|+|++.. ..|.|.+.|++
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~---------------~~~~~~i~Y~~ 65 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLL---------------PGATWSISYGD 65 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceec---------------CCcEEEEEeCC
Confidence 8999999999999999999999999999999998754 77999999999874 56899999999
Q ss_pred CCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCC-CCC-CCcceeeecCCCCCC------CCcHHhhh-----cCc
Q 044367 176 GPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAH-FSD-EQFTGVFGLGPATSS------THSLVEKV-----GSK 242 (450)
Q Consensus 176 gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GIlGLg~~~~~------~~sl~~ql-----~~~ 242 (450)
|+.+.|.+++|+|+|++ ..++++.||+++...+ .+. ...+||||||+...+ ..+++++| .++
T Consensus 66 G~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~ 140 (278)
T cd06097 66 GSSASGIVYTDTVSIGG-----VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPL 140 (278)
T ss_pred CCeEEEEEEEEEEEECC-----EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCce
Confidence 98779999999999998 8899999999998765 222 359999999998432 12445554 479
Q ss_pred eEEeecCCCCCCcccceEEecCCCc----CcceecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEec
Q 044367 243 FSYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDS 318 (450)
Q Consensus 243 Fs~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDS 318 (450)
||+||.+. ..|+|+||+.+. .++.|+|+.....+|.|++++|+|+++..... ....++|||
T Consensus 141 Fs~~l~~~-----~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~----------~~~~~iiDS 205 (278)
T cd06097 141 FTADLRKA-----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSR----------SGFSAIADT 205 (278)
T ss_pred EEEEecCC-----CCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeec----------CCceEEeec
Confidence 99999862 238899995542 24578887444789999999999998843221 167899999
Q ss_pred cCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCeE
Q 044367 319 GTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVF 398 (450)
Q Consensus 319 GTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~ 398 (450)
||+++++|.+++++|.+++.+... ......+.++|.. .+|+|+|+|
T Consensus 206 GTs~~~lP~~~~~~l~~~l~g~~~----~~~~~~~~~~C~~--------~~P~i~f~~---------------------- 251 (278)
T cd06097 206 GTTLILLPDAIVEAYYSQVPGAYY----DSEYGGWVFPCDT--------TLPDLSFAV---------------------- 251 (278)
T ss_pred CCchhcCCHHHHHHHHHhCcCCcc----cCCCCEEEEECCC--------CCCCEEEEE----------------------
Confidence 999999999999999998843211 0112234689974 289999998
Q ss_pred EEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 399 CLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 399 C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
.||||++|||++|+|||++++|||||+
T Consensus 252 ----------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 299999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.3e-46 Score=367.46 Aligned_cols=292 Identities=24% Similarity=0.446 Sum_probs=235.9
Q ss_pred eEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCC---CC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeee
Q 044367 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQC---GA-TTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRY 173 (450)
Q Consensus 98 ~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C---~~-~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Y 173 (450)
+|+++|.||||+|+++|++||||+++||++..|..| .. ..|++++|+|++. ..+.+.+.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~----------------~~~~~~~~y 64 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSN----------------QGKPFSISY 64 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEE----------------EEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccccccccccccccccccccc----------------ceeeeeeec
Confidence 599999999999999999999999999999999876 44 8999999999998 467899999
Q ss_pred CCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCC--CCCCcceeeecCCCCCC----CCcHHhhh-------c
Q 044367 174 TNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHF--SDEQFTGVFGLGPATSS----THSLVEKV-------G 240 (450)
Q Consensus 174 g~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~--~~~~~~GIlGLg~~~~~----~~sl~~ql-------~ 240 (450)
++|+ ++|.+++|+|+|++ +.++++.||++....+. .....+||||||+.... ..+++.|| .
T Consensus 65 ~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~ 138 (317)
T PF00026_consen 65 GDGS-VSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISS 138 (317)
T ss_dssp TTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSS
T ss_pred cCcc-cccccccceEeeee-----ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccc
Confidence 9999 79999999999998 89999999999985432 12358999999976332 35677776 5
Q ss_pred CceEEeecCCCCCCcccceEEecCCCcCcce-----ecccccCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceE
Q 044367 241 SKFSYCIGNLNYFEYAYNMLILGEGAILEGD-----STPMSVIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVF 315 (450)
Q Consensus 241 ~~Fs~~l~~~~~~~~~~G~l~fG~~~d~~~~-----~~pl~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~i 315 (450)
++||++|.+.. ...|.|+|| +.|.+++ |.|+ ....+|.+.+++|.++++...... ...++
T Consensus 139 ~~fsl~l~~~~---~~~g~l~~G-g~d~~~~~g~~~~~~~-~~~~~w~v~~~~i~i~~~~~~~~~----------~~~~~ 203 (317)
T PF00026_consen 139 NVFSLYLNPSD---SQNGSLTFG-GYDPSKYDGDLVWVPL-VSSGYWSVPLDSISIGGESVFSSS----------GQQAI 203 (317)
T ss_dssp SEEEEEEESTT---SSEEEEEES-SEEGGGEESEEEEEEB-SSTTTTEEEEEEEEETTEEEEEEE----------EEEEE
T ss_pred cccceeeeecc---cccchheee-ccccccccCceeccCc-cccccccccccccccccccccccc----------ceeee
Confidence 68999998876 234889999 4555554 5555 478899999999999998322211 45799
Q ss_pred EeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCC
Q 044367 316 IDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESS 395 (450)
Q Consensus 316 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~ 395 (450)
||||+++++||.+++++|++++.+.... ..+.++|.. ...+|.|+|+|+ +.++.||+++|+.....
T Consensus 204 ~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-------~~~~~~c~~------~~~~p~l~f~~~-~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 204 LDTGTSYIYLPRSIFDAIIKALGGSYSD-------GVYSVPCNS------TDSLPDLTFTFG-GVTFTIPPSDYIFKIED 269 (317)
T ss_dssp EETTBSSEEEEHHHHHHHHHHHTTEEEC-------SEEEEETTG------GGGSEEEEEEET-TEEEEEEHHHHEEEESS
T ss_pred cccccccccccchhhHHHHhhhcccccc-------eeEEEeccc------ccccceEEEeeC-CEEEEecchHhcccccc
Confidence 9999999999999999999999877532 334689976 357899999998 99999999999998765
Q ss_pred C--eEEEE-EEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 396 S--VFCLA-VGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 396 ~--~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
. ..|.. +..... ....+.+|||.+|||++|++||.+++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDS--SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESS--TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccc--cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 3 37875 444221 111256999999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.2e-45 Score=353.36 Aligned_cols=264 Identities=22% Similarity=0.373 Sum_probs=213.6
Q ss_pred eEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCCC
Q 044367 98 VFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGP 177 (450)
Q Consensus 98 ~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~gs 177 (450)
.|+++|.||||+|++.|++||||+++||+ .|.+.|++|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------~~~~~Y~~g~ 40 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------DFSISYGDGT 40 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------eeEEEeccCC
Confidence 69999999999999999999999999997 3678899987
Q ss_pred ccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCCCCCC--------CCcHHhhh-------cCc
Q 044367 178 DSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSS--------THSLVEKV-------GSK 242 (450)
Q Consensus 178 ~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~--------~~sl~~ql-------~~~ 242 (450)
.+.|.+++|+|+|++ ..++++.|||+++.. ..+||||||+...+ ..+|++|| +++
T Consensus 41 ~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~ 110 (295)
T cd05474 41 SASGTWGTDTVSIGG-----ATVKNLQFAVANSTS-----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNA 110 (295)
T ss_pred cEEEEEEEEEEEECC-----eEecceEEEEEecCC-----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceE
Confidence 789999999999998 788999999999853 48999999998431 23788886 358
Q ss_pred eEEeecCCCCCCcccceEEecCCCcCc-----ceecccccC-----CCceEEEEeeEEECCEEeecCCcccccCCCcCCC
Q 044367 243 FSYCIGNLNYFEYAYNMLILGEGAILE-----GDSTPMSVI-----DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDA 312 (450)
Q Consensus 243 Fs~~l~~~~~~~~~~G~l~fG~~~d~~-----~~~~pl~~~-----~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~ 312 (450)
||+||.+... ..|.|+||+ .|.. +.|.|+... ..+|.|++++|+++++.+..+.. .. ..
T Consensus 111 Fsl~l~~~~~---~~g~l~~Gg-~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~----~~---~~ 179 (295)
T cd05474 111 YSLYLNDLDA---STGSILFGG-VDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL----SK---NL 179 (295)
T ss_pred EEEEeCCCCC---CceeEEEee-eccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc----CC---Cc
Confidence 9999987532 248899995 4433 457777332 27899999999999987643111 11 67
Q ss_pred ceEEeccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEE
Q 044367 313 GVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQ 392 (450)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~ 392 (450)
.++|||||++++||.+++++|.+++.+.... ....+..+|+.. .. |.|+|+|+ |.+++||+++|+++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~-----~~~~~~~~C~~~------~~-p~i~f~f~-g~~~~i~~~~~~~~ 246 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS-----DEGLYVVDCDAK------DD-GSLTFNFG-GATISVPLSDLVLP 246 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC-----CCcEEEEeCCCC------CC-CEEEEEEC-CeEEEEEHHHhEec
Confidence 8999999999999999999999999776532 123347899863 23 99999998 89999999999998
Q ss_pred eC----CCeEEE-EEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 393 ES----SSVFCL-AVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 393 ~~----~~~~C~-~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
.. .+..|+ ++..... +.||||++|||++|++||.+++|||||++
T Consensus 247 ~~~~~~~~~~C~~~i~~~~~------~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 247 ASTDDGGDGACYLGIQPSTS------DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cccCCCCCCCeEEEEEeCCC------CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 64 256774 6666542 25999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=4.9e-43 Score=336.59 Aligned_cols=262 Identities=28% Similarity=0.494 Sum_probs=212.5
Q ss_pred EEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCC---CC--CCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeee
Q 044367 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA---TT--FDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRY 173 (450)
Q Consensus 99 Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~--y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Y 173 (450)
|+++|.||||+|++.|++||||+++||+|..|..|.. .. |++..|+++.. ..|.|.+.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~----------------~~~~~~~~Y 64 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD----------------TGCTFSITY 64 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec----------------CCCEEEEEE
Confidence 7899999999999999999999999999999998754 33 78888887766 789999999
Q ss_pred CCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCC-CCCcceeeecCCCCCC---CCcHHhhh-------cCc
Q 044367 174 TNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFS-DEQFTGVFGLGPATSS---THSLVEKV-------GSK 242 (450)
Q Consensus 174 g~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~~~---~~sl~~ql-------~~~ 242 (450)
++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ....+||||||+.... ..++++|| .++
T Consensus 65 ~~g~-~~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~ 138 (283)
T cd05471 65 GDGS-VTGGLGTDTVTIGG-----LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPV 138 (283)
T ss_pred CCCe-EEEEEEEeEEEECC-----EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCE
Confidence 9987 59999999999998 679999999999987522 2359999999999322 27888887 379
Q ss_pred eEEeecCCCCCCcccceEEecCCCc----CcceecccccC-CCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEe
Q 044367 243 FSYCIGNLNYFEYAYNMLILGEGAI----LEGDSTPMSVI-DGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFID 317 (450)
Q Consensus 243 Fs~~l~~~~~~~~~~G~l~fG~~~d----~~~~~~pl~~~-~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiD 317 (450)
||+||.+.. .....|.|+||+.+. .++.|+|+... ..+|.|.+++|.|+++..... . ....++||
T Consensus 139 Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~------~---~~~~~iiD 208 (283)
T cd05471 139 FSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS------S---GGGGAIVD 208 (283)
T ss_pred EEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec------C---CCcEEEEe
Confidence 999999853 112348899996553 35678888444 789999999999999741110 1 16789999
Q ss_pred ccCceeecchHHHHHHHHHHHHHHhccCCCCCCCCCccccccCccCCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCe
Q 044367 318 SGTTLTWLVPSAYQTLRKEVEDLFQGLLPSYPMDPAWHLCYSGNINRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSV 397 (450)
Q Consensus 318 SGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~ 397 (450)
|||++++||.+++++|++++.+.... ........|.. ...+|.|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~------~~~~p~i~f~f--------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS-----SDGGYGVDCSP------CDTLPDITFTF--------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc-----cCCcEEEeCcc------cCcCCCEEEEE---------------------
Confidence 99999999999999999999877532 11112344543 36799999999
Q ss_pred EEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 398 FCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 398 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
. +|||++|||++|++||.+++|||||+
T Consensus 257 ----------~-------~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------L-------WILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------E-------EEccHhhhhheEEEEeCCCCEEeecC
Confidence 2 99999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.4e-30 Score=228.47 Aligned_cols=154 Identities=38% Similarity=0.736 Sum_probs=127.4
Q ss_pred EEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCC------CCCCCCCCCceeEee
Q 044367 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCT------NDCGGYPDECWYNIR 172 (450)
Q Consensus 99 Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~------~~c~~~~~~~~~~~~ 172 (450)
|+++|.||||+|++.|+|||||+++|++|.. +.|+|++|+||+.++|.++.|. ..|...+..|.|.+.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~ 74 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPD------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQS 74 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCC------cccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceee
Confidence 8999999999999999999999999999822 7899999999999999999998 235545788999999
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCCCCCCCCcHHhhh----cCceEEeec
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPATSSTHSLVEKV----GSKFSYCIG 248 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~~~~sl~~ql----~~~Fs~~l~ 248 (450)
|++++.+.|.+++|+|+++...++...+.++.|||++...+.+. ..+||||||++ ..||++|| .++|||||.
T Consensus 75 y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~-~~~GilGLg~~---~~Sl~sQl~~~~~~~FSyCL~ 150 (164)
T PF14543_consen 75 YGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFY-GADGILGLGRG---PLSLPSQLASSSGNKFSYCLP 150 (164)
T ss_dssp ETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSST-TEEEEEE-SSS---TTSHHHHHHHH--SEEEEEB-
T ss_pred cCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCc-CCCcccccCCC---cccHHHHHHHhcCCeEEEECC
Confidence 99999999999999999999765557788999999999987666 79999999999 99999999 679999999
Q ss_pred CCCCCCcccceEEecC
Q 044367 249 NLNYFEYAYNMLILGE 264 (450)
Q Consensus 249 ~~~~~~~~~G~l~fG~ 264 (450)
+. .....|.|+||+
T Consensus 151 ~~--~~~~~g~l~fG~ 164 (164)
T PF14543_consen 151 SS--SPSSSGFLSFGD 164 (164)
T ss_dssp S---SSSSEEEEEECS
T ss_pred CC--CCCCCEEEEeCc
Confidence 92 223458899993
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=5.9e-26 Score=199.13 Aligned_cols=156 Identities=42% Similarity=0.730 Sum_probs=119.8
Q ss_pred ceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHHHHHHHHHHhcc-CCC-CCCCCCccccc
Q 044367 281 SYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTLRKEVEDLFQGL-LPS-YPMDPAWHLCY 358 (450)
Q Consensus 281 ~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~C~ 358 (450)
+|+|+|.+|+||++++.+++..|...+ +.+++||||||++++||+++|+++++++.+.+... +.+ ......+..||
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~--~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSD--GSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETT--STCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EE
T ss_pred CccEEEEEEEECCEEecCChHHhhccC--CCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCcee
Confidence 599999999999999999887764311 37889999999999999999999999999998753 111 22234478999
Q ss_pred cCcc---CCcccCCCeEEEEecCCCEEEeCCCceEEEeCCCeEEEEEEeCCCCCCCCCCceeeehhhhcceEEEEECCCC
Q 044367 359 SGNI---NRDLQGFPAMAFHFAGGADLVLDAESVFYQESSSVFCLAVGPSDINGERFKDLSIIGMIAQQNYNVAYDLVSK 435 (450)
Q Consensus 359 ~~~~---~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~ 435 (450)
+... ......+|+|+|+|.+|++++|++++|++...++..|+++....... .+..|||+.+|++++++||++++
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~---~~~~viG~~~~~~~~v~fDl~~~ 155 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADD---DGVSVIGNFQQQNYHVVFDLENG 155 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTT---SSSEEE-HHHCCTEEEEEETTTT
T ss_pred eccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCC---CCcEEECHHHhcCcEEEEECCCC
Confidence 8765 23457899999999989999999999999998899999999881111 14699999999999999999999
Q ss_pred EEEEEc
Q 044367 436 QLYFQR 441 (450)
Q Consensus 436 ~iGfa~ 441 (450)
||||+|
T Consensus 156 ~igF~~ 161 (161)
T PF14541_consen 156 RIGFAP 161 (161)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=7.9e-23 Score=167.42 Aligned_cols=103 Identities=30% Similarity=0.646 Sum_probs=91.1
Q ss_pred EEEEECCCCceEEEEEECCCCceeEeCCCCCCCCC---CCC-CCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCC
Q 044367 101 VNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGA---TTF-DPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNG 176 (450)
Q Consensus 101 ~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~---~~y-~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~g 176 (450)
++|.||||||++.|+|||||+++||+|..|..|.. +.| +|+.|++++. ..|.|.+.|++|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~----------------~~~~~~~~Y~~g 64 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSD----------------NGCTFSITYGTG 64 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCC----------------CCcEEEEEeCCC
Confidence 47999999999999999999999999999988653 556 9999999887 678999999999
Q ss_pred CccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCC--CCcceeeec
Q 044367 177 PDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSD--EQFTGVFGL 225 (450)
Q Consensus 177 s~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GIlGL 225 (450)
+ +.|.++.|+|+|++ ..++++.|||++...+.+. ...+|||||
T Consensus 65 ~-~~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 65 S-LSGGLSTDTVSIGD-----IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred e-EEEEEEEEEEEECC-----EEECCEEEEEEEecCCccccccccccccCC
Confidence 8 48999999999988 7899999999999876432 358999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.17 E-value=6.8e-06 Score=64.84 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=68.8
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNG 176 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~g 176 (450)
+.|++++.|+ .+++.++||||++.+|+.......+.. .. .......+...+|
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~---------~~-----------------~~~~~~~~~~~~G 52 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL---------PL-----------------TLGGKVTVQTANG 52 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC---------Cc-----------------cCCCcEEEEecCC
Confidence 3589999999 699999999999999997642211110 00 0223566777888
Q ss_pred CccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCC
Q 044367 177 PDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGP 227 (450)
Q Consensus 177 s~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 227 (450)
.........+.+++++ ..++++.+........ ..+||||+.+
T Consensus 53 ~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 53 RVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred CccceEEEcceEEECC-----cEEeccEEEEeCCccc----CCceEeChHH
Confidence 7666677799999998 7888888887766543 4899999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.78 E-value=0.0074 Score=49.87 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=63.0
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNG 176 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~g 176 (450)
+.|++++.|. .+++.++||||++.+-+....-... ..++.. ......+.=+.|
T Consensus 10 g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L---gl~~~~----------------------~~~~~~~~ta~G 62 (121)
T TIGR02281 10 GHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL---GLDLNR----------------------LGYTVTVSTANG 62 (121)
T ss_pred CeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc---CCCccc----------------------CCceEEEEeCCC
Confidence 7999999997 5899999999999998865321111 011110 111333444556
Q ss_pred CccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCCC
Q 044367 177 PDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGPA 228 (450)
Q Consensus 177 s~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~ 228 (450)
......+.-|.+.+++ +.++++.+.++.... ..+|+||+.+=
T Consensus 63 ~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~-----~~~~LLGm~fL 104 (121)
T TIGR02281 63 QIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGA-----LSESLLGMSFL 104 (121)
T ss_pred cEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCc-----CCceEcCHHHH
Confidence 6444556889999999 899999987775432 14799998753
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.54 E-value=0.018 Score=44.31 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=55.0
Q ss_pred EEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeCCCCccc
Q 044367 101 VNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYTNGPDSQ 180 (450)
Q Consensus 101 ~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg~gs~~~ 180 (450)
+++.|+ .+++++++|||++.+.+...-+.... ..+.. ......+.-.+|....
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~---~~~~~----------------------~~~~~~~~~~~g~~~~ 53 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG---LKPRP----------------------KSVPISVSGAGGSVTV 53 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC---CCCcC----------------------CceeEEEEeCCCCEEE
Confidence 367777 58999999999998887654221110 00000 1112333334455445
Q ss_pred eeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecC
Q 044367 181 GTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLG 226 (450)
Q Consensus 181 G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg 226 (450)
.....+.+++++ ..+.++.|-+.... ...+||||+-
T Consensus 54 ~~~~~~~i~ig~-----~~~~~~~~~v~~~~-----~~~~~iLG~d 89 (90)
T PF13650_consen 54 YRGRVDSITIGG-----ITLKNVPFLVVDLG-----DPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEECC-----EEEEeEEEEEECCC-----CCCEEEeCCc
Confidence 556677899988 78888888766622 2489999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.28 E-value=0.09 Score=43.60 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=57.3
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeE-eeeC-
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYN-IRYT- 174 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~-~~Yg- 174 (450)
..+++++.|+ ++++.+++|||++.+++...-+..+.-+ +.. ...+. ...+
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~---~~~-----------------------~~~~~~~~~g~ 66 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLM---RLI-----------------------DKRFQGIAKGV 66 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCc---ccc-----------------------CcceEEEEecC
Confidence 6789999999 5899999999999999876543333210 000 01122 2223
Q ss_pred CCCccceeEEEEEEEeecCCCCceeeeeEEEEeEecCCCCCCCCcceeeecCC
Q 044367 175 NGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCSHNNAHFSDEQFTGVFGLGP 227 (450)
Q Consensus 175 ~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 227 (450)
++....|....+.+.+++ ..++ ..|.+.... ..|+|||+-+
T Consensus 67 g~~~~~g~~~~~~l~i~~-----~~~~-~~~~Vl~~~------~~d~ILG~d~ 107 (124)
T cd05479 67 GTQKILGRIHLAQVKIGN-----LFLP-CSFTVLEDD------DVDFLIGLDM 107 (124)
T ss_pred CCcEEEeEEEEEEEEECC-----EEee-eEEEEECCC------CcCEEecHHH
Confidence 223346666677889988 4543 666655332 3899999865
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.49 E-value=0.49 Score=39.18 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=22.2
Q ss_pred eeeehhhhcceEEEEECCCCEEEE
Q 044367 416 SIIGMIAQQNYNVAYDLVSKQLYF 439 (450)
Q Consensus 416 ~ilG~~fl~~~yvvfD~~~~~iGf 439 (450)
.|||..||+.+-.+.|+.+++|-|
T Consensus 101 ~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 101 FLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEecHHHHHhCCeEEECCCCEEEC
Confidence 899999999999999999998753
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.05 E-value=0.2 Score=42.23 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=25.3
Q ss_pred eeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 416 SIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 416 ~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
.|||..+|+.+..+-|..+++|-|...
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeCC
Confidence 999999999999999999999999753
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=92.24 E-value=2.2 Score=41.59 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=55.4
Q ss_pred eEEEEEEECCCC----ceE-EEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEee
Q 044367 98 VFYVNFSIGQPP----VPQ-LAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIR 172 (450)
Q Consensus 98 ~Y~~~i~iGtP~----q~~-~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~ 172 (450)
.=++.|+|=-|. |.+ +|++||||.-+=|..+.-..-..+..-...+ .-.++ ..| ..
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~l~~~Lp~~t~-~g~~l---------------aEC---~~ 83 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSSLAGSLPQQTG-GGAPL---------------AEC---AQ 83 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchhhhccCCcccC-CCcch---------------hhh---hh
Confidence 456666665543 455 8999999988776554210000000111111 11111 122 45
Q ss_pred eCCCCccceeEEEEEEEeecCCCCceeeeeEEEEeE----------ecCC---CCCCCCcceeeecCCC
Q 044367 173 YTNGPDSQGTIGSEQFNFETSDEGKTFLYDVGFGCS----------HNNA---HFSDEQFTGVFGLGPA 228 (450)
Q Consensus 173 Yg~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~----------~~~~---~~~~~~~~GIlGLg~~ 228 (450)
|++|. +-|-+.+-.|+|++... ..++-|.++-. .... ......++||||+|.-
T Consensus 84 F~sgy-tWGsVr~AdV~igge~A--~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 84 FASGY-TWGSVRTADVTIGGETA--SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ccCcc-cccceEEEEEEEcCeec--cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 66665 47888889999998421 22333333221 1110 0111249999999875
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.44 E-value=0.23 Score=38.56 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.3
Q ss_pred EEEEEEECCCCceEEEEEECCCCceeEeCCC
Q 044367 99 FYVNFSIGQPPVPQLAVLDTGSSLIWVKCQP 129 (450)
Q Consensus 99 Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~ 129 (450)
|++++.|+ .+++.+++||||+.+++..+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889998 599999999999999997653
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.68 E-value=2.5 Score=32.33 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEECCCCceEEEEEECCCCceeEeCCC
Q 044367 102 NFSIGQPPVPQLAVLDTGSSLIWVKCQP 129 (450)
Q Consensus 102 ~i~iGtP~q~~~~~~DTGSs~~wv~~~~ 129 (450)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35555 589999999999999997653
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.00 E-value=2.4 Score=34.04 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.2
Q ss_pred ceeeehhhhcceEEEEECCCCEE
Q 044367 415 LSIIGMIAQQNYNVAYDLVSKQL 437 (450)
Q Consensus 415 ~~ilG~~fl~~~yvvfD~~~~~i 437 (450)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 38999999999999999988753
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.61 E-value=0.92 Score=33.50 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=29.3
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQ 132 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~ 132 (450)
+.+++++.||. +.+.+++|||++...+....+..
T Consensus 7 g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a~r 40 (72)
T PF13975_consen 7 GLMYVPVSIGG--VQVKALVDTGATHNFISESLAKR 40 (72)
T ss_pred CEEEEEEEECC--EEEEEEEeCCCcceecCHHHHHH
Confidence 78999999995 99999999999999987665433
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.92 E-value=2 Score=33.75 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.6
Q ss_pred EEEEEECCCCceEEEEEECCCCceeEeCCC
Q 044367 100 YVNFSIGQPPVPQLAVLDTGSSLIWVKCQP 129 (450)
Q Consensus 100 ~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~ 129 (450)
+++|.|. .+++.++|||||+.+.++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5677888 489999999999999988653
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.58 E-value=3.1 Score=34.26 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=28.6
Q ss_pred CCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHH
Q 044367 278 IDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 278 ~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (450)
..++|.++ +.|+|+.+ .++||||.+.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~----------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV----------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE----------------EEEEECCCCcEEcCHHHHHHc
Confidence 45666654 66788743 499999999999999888765
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.91 E-value=2.3 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.2
Q ss_pred CceEEeccCceeecchHHHHHH
Q 044367 312 AGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l 333 (450)
..++||||.+.+.+.++.++++
T Consensus 10 ~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 10 VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEEcCCCCcEEECHHHHHHc
Confidence 3599999999999999888776
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=75.39 E-value=4.7 Score=31.07 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.0
Q ss_pred eEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHH
Q 044367 288 GISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 288 ~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (450)
.+.|+|+.+ .+.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i----------------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL----------------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE----------------EEEEcCCcceEEeCHHHHHHh
Confidence 367788854 499999999999999888876
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.83 E-value=5.9 Score=29.12 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.3
Q ss_pred ceEEeccCceeecchHHHHHH
Q 044367 313 GVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (450)
.+++|||.+-.+++.+..+++
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 499999999999999988887
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.89 E-value=7.8 Score=29.61 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.7
Q ss_pred CceEEeccCceeecchHHHHHH
Q 044367 312 AGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l 333 (450)
..++||||++.+.++.+..+.+
T Consensus 14 ~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 14 VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEEECCCCcEEcCHHHHHHc
Confidence 3599999999999999877665
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.00 E-value=5.7 Score=30.57 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.1
Q ss_pred EEEECCCCceEEEEEECCCCceeEeCC
Q 044367 102 NFSIGQPPVPQLAVLDTGSSLIWVKCQ 128 (450)
Q Consensus 102 ~i~iGtP~q~~~~~~DTGSs~~wv~~~ 128 (450)
.+.|+ .|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 69999999999999998754
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=70.50 E-value=2.9 Score=35.94 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCceEEeccCceeecchHHHHHHH
Q 044367 311 DAGVFIDSGTTLTWLVPSAYQTLR 334 (450)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~~l~ 334 (450)
...++||||++..+.-.++.+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 556999999999999988887763
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.39 E-value=9.7 Score=29.00 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.9
Q ss_pred ceEEeccCceeecchHHHHHH
Q 044367 313 GVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (450)
.+++|||.+.+.++++..+++
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999999888775
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=61.19 E-value=29 Score=31.19 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=53.2
Q ss_pred CcceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCceeEeeeC
Q 044367 95 TVPVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCGATTFDPSKSLTYATLPCDSSYCTNDCGGYPDECWYNIRYT 174 (450)
Q Consensus 95 ~~~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~~~~y~p~~SsT~~~~~c~~~~C~~~c~~~~~~~~~~~~Yg 174 (450)
++|-|.++..|= +|++..++|||-+.+-+....-.. --||... -..++.+.-.
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R---lGid~~~----------------------l~y~~~v~TA 154 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR---LGIDLNS----------------------LDYTITVSTA 154 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH---hCCCccc----------------------cCCceEEEcc
Confidence 347899999987 699999999999988886543211 1233221 1234556667
Q ss_pred CCCccceeEEEEEEEeecCCCCceeeeeEEE
Q 044367 175 NGPDSQGTIGSEQFNFETSDEGKTFLYDVGF 205 (450)
Q Consensus 175 ~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~f 205 (450)
+|......+-.|.|.||+ +.++++.-
T Consensus 155 NG~~~AA~V~Ld~v~IG~-----I~~~nV~A 180 (215)
T COG3577 155 NGRARAAPVTLDRVQIGG-----IRVKNVDA 180 (215)
T ss_pred CCccccceEEeeeEEEcc-----EEEcCchh
Confidence 787555567889999988 66665543
No 48
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=53.65 E-value=81 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.3
Q ss_pred CCceEEeccCceeecchHHHH
Q 044367 311 DAGVFIDSGTTLTWLVPSAYQ 331 (450)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~ 331 (450)
+...+||||.....+|....+
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 667999999999999975443
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=52.48 E-value=19 Score=31.03 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.8
Q ss_pred EEEEEECCCCceEEEEEECCCCceeEeCC
Q 044367 100 YVNFSIGQPPVPQLAVLDTGSSLIWVKCQ 128 (450)
Q Consensus 100 ~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 128 (450)
...+.++.-..+++++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555666679999999999999888654
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.63 E-value=17 Score=28.24 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=14.3
Q ss_pred ceEEeccCceeecchH
Q 044367 313 GVFIDSGTTLTWLVPS 328 (450)
Q Consensus 313 ~~iiDSGTt~~~lp~~ 328 (450)
.++||||...+.++.+
T Consensus 18 ~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 18 KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTBSSEEESSG
T ss_pred EEEEecCCCcceeccc
Confidence 4999999999999964
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=50.38 E-value=41 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=29.5
Q ss_pred cCCCceEEEEeeEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHH
Q 044367 277 VIDGSYYVTLEGISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 277 ~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (450)
..+++|.++ ..|||+.+ ..++|||.|.+.++++...++
T Consensus 101 ~~~GHF~a~---~~VNGk~v----------------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKV----------------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEE----------------EEEEecCcceeecCHHHHHHh
Confidence 346677644 67899865 489999999999998876664
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.19 E-value=10 Score=31.29 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=25.4
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCCCCCCCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQPCEQCG 134 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~C~~C~ 134 (450)
...|+++.|. .+++++++|||...+-+...-+..|+
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 6789999999 59999999999999988765444454
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.68 E-value=27 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.4
Q ss_pred CCceEEeccCceeecchHHHHHHH
Q 044367 311 DAGVFIDSGTTLTWLVPSAYQTLR 334 (450)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~~l~ 334 (450)
...+.+|||.+...+|...++++-
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhhc
Confidence 456999999999999988887764
No 54
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=46.67 E-value=39 Score=30.37 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.6
Q ss_pred ceeeehhhhcceEEEEECCCCEEEEEc
Q 044367 415 LSIIGMIAQQNYNVAYDLVSKQLYFQR 441 (450)
Q Consensus 415 ~~ilG~~fl~~~yvvfD~~~~~iGfa~ 441 (450)
..|||+.|+|.|+=....+ .+|-|..
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 3999999999887665555 4677754
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.04 E-value=38 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=23.2
Q ss_pred eEEECCEEeecCCcccccCCCcCCCceEEeccCceeecchHHHHHH
Q 044367 288 GISLGEKMLDIDPNLFKKNDTWSDAGVFIDSGTTLTWLVPSAYQTL 333 (450)
Q Consensus 288 ~i~vg~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (450)
.++++|+.+ .|+||||...+.++.+..+++
T Consensus 28 ~~~ing~~v----------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV----------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE----------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE----------------EEEEeCCCCccccCHHHHHHc
Confidence 367888865 499999999999999988874
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.88 E-value=23 Score=29.00 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.1
Q ss_pred eEEeccCc-eeecchHHHHHH
Q 044367 314 VFIDSGTT-LTWLVPSAYQTL 333 (450)
Q Consensus 314 ~iiDSGTt-~~~lp~~~~~~l 333 (450)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999998876
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=35.45 E-value=47 Score=26.49 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEECCCCc----eEEEEEECCCCcee-Ee
Q 044367 101 VNFSIGQPPV----PQLAVLDTGSSLIW-VK 126 (450)
Q Consensus 101 ~~i~iGtP~q----~~~~~~DTGSs~~w-v~ 126 (450)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888733 67999999998664 44
No 58
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=31.91 E-value=4.4e+02 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=24.6
Q ss_pred eeeehhhhcceEEEEECCCCEEEEEcC
Q 044367 416 SIIGMIAQQNYNVAYDLVSKQLYFQRI 442 (450)
Q Consensus 416 ~ilG~~fl~~~yvvfD~~~~~iGfa~~ 442 (450)
..||.-.||.+--.-|++++++-|+..
T Consensus 320 ~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 320 LLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred hhhhHHHHHhccceeecccCeEEecCC
Confidence 899999999999999999998887654
No 59
>PF15240 Pro-rich: Proline-rich
Probab=25.23 E-value=29 Score=30.43 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcCCccc
Q 044367 5 HAILLLSLITLPFTST 20 (450)
Q Consensus 5 ~~~l~~~~~~~~~~~~ 20 (450)
|+|+||.++||+|.||
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 4566666666666333
No 60
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=24.55 E-value=96 Score=29.18 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.7
Q ss_pred ceEEEE---EEECC---CCceEEEEEECCCCceeEeCC
Q 044367 97 PVFYVN---FSIGQ---PPVPQLAVLDTGSSLIWVKCQ 128 (450)
Q Consensus 97 ~~Y~~~---i~iGt---P~q~~~~~~DTGSs~~wv~~~ 128 (450)
..|.++ |.||. +.....++||||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567665 57873 233457999999999999865
No 61
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.66 E-value=1.2e+02 Score=25.34 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=25.0
Q ss_pred ceEEEEEEECCCCceEEEEEECCCCceeEeCC
Q 044367 97 PVFYVNFSIGQPPVPQLAVLDTGSSLIWVKCQ 128 (450)
Q Consensus 97 ~~Y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 128 (450)
..-.+.+.|.+ ++..++||+|++..++...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 45677888886 8999999999999998654
Done!