BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044369
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
           Phosphoribosylpyrophosphate Synthetase: Molecular Basis
           Of Allosteric Inhibition And Activation.
 pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
           Phosphoribosylpyrophosphate Synthetase: Molecular Basis
           Of Allosteric Inhibition And Activation.
 pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
           Phosphoribosylpyrophosphate Synthetase: Molecular Basis
           Of Allosteric Inhibition And Activation.
 pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
           Phosphoribosylpyrophosphate Synthetase: Molecular Basis
           Of Allosteric Inhibition And Activation.
 pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
           Cadmium Ions
 pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
           Cadmium Ions
          Length = 317

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 26  ELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAAHD 85
           +LHA ++  Q    +P + LMG  +   + +GK +EDIV V   +P H  +  A K A  
Sbjct: 134 DLHAPQI--QGFFDIPIDHLMGVPILGEYFEGKNLEDIVIV---SPDHGGVTRARKLADR 188

Query: 86  LGCDLKIV 93
           L   + I+
Sbjct: 189 LKAPIAII 196


>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
          Length = 742

 Score = 27.3 bits (59), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 32  LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAAH 84
           LFN   P  PW  L+G  +     Q +  + +V  LK    HP  + AV  ++
Sbjct: 59  LFNIAKPRPPWMGLLGPTI-----QAEVYDTVVITLKNMASHPVSLHAVGVSY 106


>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
          Length = 754

 Score = 27.3 bits (59), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 32  LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAAH 84
           LFN   P  PW  L+G  +     Q +  + +V  LK    HP  + AV  ++
Sbjct: 58  LFNIAKPRPPWMGLLGPTI-----QAEVYDTVVITLKNMASHPVSLHAVGVSY 105


>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
           O-Methyl Tyrosyl-Trna Synthetase Evolved From
           Methanosarcina Mazei Pylrs, Complexed With O-Methyl
           Tyrosine And Amp-Pnp
          Length = 290

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 86  LGCDLKIVSDANLFFIETILKHHGIWELFSEI 117
           LG D KIV D+ + F +T+   HG  EL S +
Sbjct: 206 LGIDFKIVGDSCMVFGDTLDVMHGDLELSSAL 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,917,441
Number of Sequences: 62578
Number of extensions: 179329
Number of successful extensions: 412
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 5
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)