Query 044369
Match_columns 157
No_of_seqs 136 out of 1779
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3120 Predicted haloacid deh 100.0 1.2E-29 2.5E-34 173.1 14.1 149 2-156 12-164 (256)
2 PF06888 Put_Phosphatase: Puta 100.0 3.3E-27 7.1E-32 166.4 14.2 145 5-156 2-151 (234)
3 TIGR01489 DKMTPPase-SF 2,3-dik 99.9 2.4E-20 5.2E-25 128.5 16.1 134 4-137 2-138 (188)
4 COG0637 Predicted phosphatase/ 99.8 5.6E-20 1.2E-24 130.0 8.8 136 2-138 1-163 (221)
5 PRK11587 putative phosphatase; 99.8 1.6E-18 3.4E-23 122.4 9.1 113 1-119 1-130 (218)
6 PLN02770 haloacid dehalogenase 99.8 1.1E-18 2.3E-23 125.6 7.7 132 2-137 21-170 (248)
7 PRK13288 pyrophosphatase PpaX; 99.8 8.2E-19 1.8E-23 123.5 6.7 112 1-119 1-130 (214)
8 PLN03243 haloacid dehalogenase 99.8 1.6E-18 3.4E-23 125.3 8.3 126 3-137 24-171 (260)
9 PRK09552 mtnX 2-hydroxy-3-keto 99.8 2.3E-17 5E-22 116.6 13.9 117 1-122 1-122 (219)
10 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 5E-17 1.1E-21 113.1 15.1 129 2-134 3-139 (201)
11 PLN02575 haloacid dehalogenase 99.8 9.1E-19 2E-23 131.4 5.9 130 2-137 130-278 (381)
12 PRK14988 GMP/IMP nucleotidase; 99.8 4.8E-18 1E-22 120.5 8.7 66 68-137 90-155 (224)
13 PRK09449 dUMP phosphatase; Pro 99.7 3E-17 6.6E-22 116.2 12.4 132 1-137 1-156 (224)
14 TIGR03351 PhnX-like phosphonat 99.7 5.5E-18 1.2E-22 119.7 8.4 127 3-137 1-151 (220)
15 COG0546 Gph Predicted phosphat 99.7 3.8E-18 8.3E-23 120.7 6.6 131 1-136 2-150 (220)
16 TIGR01428 HAD_type_II 2-haloal 99.7 2.1E-17 4.6E-22 115.0 10.2 72 62-137 83-154 (198)
17 PRK13478 phosphonoacetaldehyde 99.7 1.5E-17 3.3E-22 120.8 9.4 65 69-137 99-164 (267)
18 TIGR00338 serB phosphoserine p 99.7 1E-16 2.2E-21 113.2 13.3 113 2-116 13-130 (219)
19 PRK10826 2-deoxyglucose-6-phos 99.7 4.2E-17 9.1E-22 115.5 11.3 117 2-119 6-140 (222)
20 PRK13226 phosphoglycolate phos 99.7 6E-18 1.3E-22 120.4 6.8 130 2-137 11-157 (229)
21 TIGR01422 phosphonatase phosph 99.7 3.7E-17 8.1E-22 117.9 9.5 65 69-137 97-162 (253)
22 PRK13582 thrH phosphoserine ph 99.7 2.8E-16 6E-21 109.8 13.6 114 3-118 1-114 (205)
23 PLN02954 phosphoserine phospha 99.7 9.7E-17 2.1E-21 113.6 11.1 112 1-115 10-130 (224)
24 PRK10725 fructose-1-P/6-phosph 99.7 6.3E-17 1.4E-21 111.6 9.0 127 3-137 5-148 (188)
25 TIGR02009 PGMB-YQAB-SF beta-ph 99.7 2.7E-16 5.8E-21 108.2 11.0 125 3-135 1-146 (185)
26 TIGR02253 CTE7 HAD superfamily 99.7 3.4E-16 7.3E-21 110.6 11.6 64 69-136 92-155 (221)
27 TIGR01548 HAD-SF-IA-hyp1 haloa 99.7 1.8E-16 4E-21 110.3 9.0 62 71-137 106-167 (197)
28 TIGR02252 DREG-2 REG-2-like, H 99.7 2.1E-16 4.6E-21 110.3 9.2 63 70-137 104-166 (203)
29 TIGR01449 PGP_bact 2-phosphogl 99.7 2.4E-16 5.3E-21 110.7 9.4 51 70-120 84-134 (213)
30 PRK13225 phosphoglycolate phos 99.7 5.3E-17 1.1E-21 118.1 5.8 113 2-119 61-190 (273)
31 TIGR01990 bPGM beta-phosphoglu 99.7 4.7E-16 1E-20 106.9 10.0 125 5-137 1-147 (185)
32 TIGR01454 AHBA_synth_RP 3-amin 99.7 1.2E-16 2.7E-21 111.7 7.2 64 69-136 73-136 (205)
33 PRK13223 phosphoglycolate phos 99.7 4.4E-16 9.5E-21 113.4 9.7 129 2-135 12-161 (272)
34 PRK10563 6-phosphogluconate ph 99.7 6.8E-16 1.5E-20 109.1 10.3 127 2-137 3-148 (221)
35 PLN02940 riboflavin kinase 99.7 2.4E-16 5.3E-21 119.6 8.5 129 3-137 11-156 (382)
36 PRK13222 phosphoglycolate phos 99.7 3.7E-16 7.9E-21 110.7 8.2 118 1-120 4-142 (226)
37 PRK06698 bifunctional 5'-methy 99.7 7.1E-16 1.5E-20 119.8 9.9 117 1-121 239-380 (459)
38 TIGR02254 YjjG/YfnB HAD superf 99.7 1.6E-15 3.4E-20 107.2 10.7 62 70-136 96-157 (224)
39 PRK09456 ?-D-glucose-1-phospha 99.6 4.5E-15 9.8E-20 103.5 11.5 129 4-137 1-147 (199)
40 TIGR03333 salvage_mtnX 2-hydro 99.6 1.2E-14 2.7E-19 102.4 13.4 112 6-123 2-119 (214)
41 TIGR02137 HSK-PSP phosphoserin 99.6 1.2E-14 2.6E-19 101.5 12.6 110 4-115 2-111 (203)
42 TIGR02247 HAD-1A3-hyp Epoxide 99.6 3.9E-15 8.4E-20 104.6 9.8 65 69-137 92-158 (211)
43 PF13419 HAD_2: Haloacid dehal 99.6 6.6E-16 1.4E-20 104.6 5.4 128 6-137 1-139 (176)
44 COG0560 SerB Phosphoserine pho 99.6 2.2E-14 4.8E-19 100.7 12.4 115 2-118 4-124 (212)
45 PLN02919 haloacid dehalogenase 99.6 4.2E-15 9E-20 124.7 9.2 131 2-137 74-224 (1057)
46 TIGR01993 Pyr-5-nucltdase pyri 99.6 7.9E-15 1.7E-19 101.0 9.0 78 57-137 64-147 (184)
47 COG1011 Predicted hydrolase (H 99.6 1.9E-14 4.2E-19 102.0 10.3 63 70-137 98-160 (229)
48 TIGR01549 HAD-SF-IA-v1 haloaci 99.6 1.2E-14 2.7E-19 97.2 7.8 118 5-137 1-124 (154)
49 TIGR01509 HAD-SF-IA-v3 haloaci 99.6 9.3E-15 2E-19 100.1 6.8 63 70-137 84-146 (183)
50 PRK10748 flavin mononucleotide 99.5 4.8E-14 1E-18 100.9 9.8 59 69-137 111-169 (238)
51 TIGR01493 HAD-SF-IA-v2 Haloaci 99.5 2.6E-14 5.6E-19 97.6 7.4 64 63-137 82-145 (175)
52 TIGR01488 HAD-SF-IB Haloacid D 99.5 1.4E-13 3E-18 94.0 10.8 109 5-115 1-117 (177)
53 PRK11133 serB phosphoserine ph 99.5 3E-13 6.6E-18 100.4 12.1 110 3-114 110-224 (322)
54 PHA02597 30.2 hypothetical pro 99.5 1.3E-13 2.9E-18 95.8 8.8 109 2-116 1-118 (197)
55 PLN02779 haloacid dehalogenase 99.5 2.1E-13 4.6E-18 100.0 10.3 46 70-115 143-188 (286)
56 KOG2914 Predicted haloacid-hal 99.5 5.9E-14 1.3E-18 98.5 6.5 116 3-119 10-141 (222)
57 PRK11590 hypothetical protein; 99.5 2E-12 4.4E-17 90.9 12.0 117 3-122 6-146 (211)
58 TIGR01672 AphA HAD superfamily 99.5 2E-13 4.3E-18 97.2 6.7 99 4-120 64-167 (237)
59 KOG1615 Phosphoserine phosphat 99.4 2.2E-12 4.7E-17 87.3 10.5 126 3-130 16-145 (227)
60 COG4359 Uncharacterized conser 99.4 2E-11 4.2E-16 82.0 14.0 127 4-133 3-137 (220)
61 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.4 1.1E-11 2.5E-16 86.3 12.8 111 5-116 1-132 (202)
62 TIGR01545 YfhB_g-proteo haloac 99.4 2.2E-11 4.8E-16 85.6 12.6 118 2-122 4-145 (210)
63 TIGR01681 HAD-SF-IIIC HAD-supe 99.3 6.9E-13 1.5E-17 86.2 3.7 50 71-120 29-86 (128)
64 KOG3085 Predicted hydrolase (H 99.3 1.7E-12 3.6E-17 91.7 4.9 132 1-137 5-174 (237)
65 TIGR01684 viral_ppase viral ph 99.3 1.8E-11 3.8E-16 88.7 7.8 51 72-122 146-197 (301)
66 PLN02811 hydrolase 99.3 2.6E-11 5.7E-16 85.8 7.6 125 10-137 1-143 (220)
67 cd01427 HAD_like Haloacid deha 99.2 2.7E-11 5.9E-16 78.5 5.9 73 5-120 1-73 (139)
68 TIGR01691 enolase-ppase 2,3-di 99.2 7E-11 1.5E-15 83.4 6.0 49 70-118 94-145 (220)
69 TIGR01544 HAD-SF-IE haloacid d 99.2 8.7E-10 1.9E-14 79.9 11.5 77 55-131 103-181 (277)
70 PHA03398 viral phosphatase sup 99.2 2.3E-10 4.9E-15 83.1 8.2 49 74-122 151-199 (303)
71 TIGR01685 MDP-1 magnesium-depe 99.1 8.3E-12 1.8E-16 85.0 0.7 52 68-119 42-103 (174)
72 TIGR01662 HAD-SF-IIIA HAD-supe 99.1 3.6E-10 7.8E-15 73.7 7.0 42 70-111 24-73 (132)
73 PRK08942 D,D-heptose 1,7-bisph 99.1 1.4E-10 3E-15 79.7 4.7 66 70-137 28-109 (181)
74 TIGR01664 DNA-3'-Pase DNA 3'-p 99.1 4.4E-10 9.6E-15 76.2 6.8 45 72-118 43-99 (166)
75 TIGR01261 hisB_Nterm histidino 99.0 3.1E-10 6.7E-15 76.6 4.7 67 69-137 27-109 (161)
76 PRK08238 hypothetical protein; 99.0 1.7E-09 3.8E-14 84.3 9.3 104 4-122 11-120 (479)
77 PRK11009 aphA acid phosphatase 99.0 9.9E-10 2.1E-14 78.3 6.1 52 69-120 112-169 (237)
78 TIGR00213 GmhB_yaeD D,D-heptos 99.0 8.9E-10 1.9E-14 75.4 5.4 49 69-119 24-87 (176)
79 KOG3109 Haloacid dehalogenase- 99.0 1.1E-08 2.4E-13 70.8 10.1 115 3-119 15-146 (244)
80 TIGR01656 Histidinol-ppas hist 99.0 9.6E-10 2.1E-14 73.1 4.8 42 70-111 26-82 (147)
81 PF12710 HAD: haloacid dehalog 98.9 4.6E-09 1E-13 72.4 5.9 47 74-122 92-138 (192)
82 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 7E-09 1.5E-13 74.5 6.6 52 70-121 23-77 (242)
83 TIGR02244 HAD-IG-Ncltidse HAD 98.8 1.3E-07 2.8E-12 70.7 12.6 56 70-125 183-249 (343)
84 PRK06769 hypothetical protein; 98.8 4.7E-09 1E-13 71.7 3.9 47 70-116 27-81 (173)
85 TIGR01686 FkbH FkbH-like domai 98.8 3.1E-09 6.7E-14 79.3 2.0 48 72-119 32-83 (320)
86 TIGR01533 lipo_e_P4 5'-nucleot 98.8 7.1E-08 1.5E-12 69.9 8.7 52 68-119 115-170 (266)
87 PRK01158 phosphoglycolate phos 98.7 6.5E-08 1.4E-12 68.7 7.4 61 1-112 1-61 (230)
88 PRK00192 mannosyl-3-phosphogly 98.7 6.4E-08 1.4E-12 70.7 7.4 62 1-113 2-63 (273)
89 TIGR01670 YrbI-phosphatas 3-de 98.7 4.3E-09 9.2E-14 70.6 0.6 59 79-137 36-95 (154)
90 TIGR01668 YqeG_hyp_ppase HAD s 98.7 4E-08 8.7E-13 66.9 5.0 68 70-137 42-111 (170)
91 PF12689 Acid_PPase: Acid Phos 98.6 1.4E-08 2.9E-13 68.8 0.8 44 68-111 42-86 (169)
92 smart00577 CPDc catalytic doma 98.6 4.9E-08 1.1E-12 65.0 3.2 77 69-146 43-129 (148)
93 PRK05446 imidazole glycerol-ph 98.6 1E-07 2.2E-12 71.7 5.2 65 70-136 29-109 (354)
94 PLN02645 phosphoglycolate phos 98.6 2.3E-07 5.1E-12 69.0 7.1 49 71-119 44-95 (311)
95 TIGR01663 PNK-3'Pase polynucle 98.5 3.3E-07 7.2E-12 72.2 7.4 46 72-119 198-255 (526)
96 PF00702 Hydrolase: haloacid d 98.5 2.4E-07 5.2E-12 64.7 5.5 43 70-112 126-168 (215)
97 COG4996 Predicted phosphatase 98.4 2.2E-07 4.9E-12 59.4 3.6 53 68-120 38-90 (164)
98 COG2179 Predicted hydrolase of 98.4 3E-07 6.5E-12 61.3 4.2 43 69-111 44-86 (175)
99 COG4229 Predicted enolase-phos 98.4 1.5E-06 3.1E-11 58.9 7.2 69 69-137 101-180 (229)
100 PRK10513 sugar phosphate phosp 98.4 1E-06 2.2E-11 64.1 7.1 35 78-112 27-61 (270)
101 TIGR01487 SPP-like sucrose-pho 98.4 1.2E-06 2.6E-11 61.7 6.9 41 72-112 19-59 (215)
102 TIGR01675 plant-AP plant acid 98.4 4.2E-06 9.2E-11 59.3 9.1 50 68-118 117-169 (229)
103 TIGR01452 PGP_euk phosphoglyco 98.4 1.6E-06 3.4E-11 63.6 6.9 48 72-119 19-69 (279)
104 PRK10530 pyridoxal phosphate ( 98.4 1.8E-06 3.9E-11 62.8 7.0 34 78-111 27-60 (272)
105 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.4 1.3E-06 2.8E-11 63.3 6.2 48 72-119 22-72 (257)
106 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.3 2.2E-06 4.7E-11 61.9 7.0 47 73-119 19-68 (249)
107 smart00775 LNS2 LNS2 domain. T 98.3 1.8E-06 3.8E-11 58.1 5.2 35 73-107 29-66 (157)
108 COG0561 Cof Predicted hydrolas 98.3 3.6E-06 7.8E-11 61.1 7.1 61 1-112 1-61 (264)
109 PRK10444 UMP phosphatase; Prov 98.3 3.5E-06 7.6E-11 60.8 6.8 48 72-119 18-68 (248)
110 TIGR01689 EcbF-BcbF capsule bi 98.2 5.8E-06 1.3E-10 53.4 6.4 47 71-119 24-85 (126)
111 PF06941 NT5C: 5' nucleotidase 98.2 2E-06 4.4E-11 59.6 4.5 88 4-99 2-101 (191)
112 PRK15126 thiamin pyrimidine py 98.2 6.2E-06 1.3E-10 60.1 7.1 35 78-112 26-60 (272)
113 PRK09484 3-deoxy-D-manno-octul 98.2 2.8E-07 6.1E-12 63.5 -0.1 38 79-116 56-93 (183)
114 PRK10976 putative hydrolase; P 98.2 7.7E-06 1.7E-10 59.4 7.2 34 78-111 26-59 (266)
115 PLN02177 glycerol-3-phosphate 98.1 0.00013 2.7E-09 57.7 12.5 110 3-122 22-154 (497)
116 PLN02887 hydrolase family prot 98.1 1.5E-05 3.3E-10 63.8 7.4 36 76-111 330-365 (580)
117 PF08645 PNK3P: Polynucleotide 98.0 1.7E-06 3.7E-11 58.3 1.3 27 70-96 27-54 (159)
118 PF08282 Hydrolase_3: haloacid 98.0 2.2E-05 4.8E-10 55.9 7.1 40 72-111 16-55 (254)
119 PRK12702 mannosyl-3-phosphogly 98.0 2.3E-05 5.1E-10 57.4 7.0 36 77-112 24-59 (302)
120 PF03031 NIF: NLI interacting 98.0 6.8E-06 1.5E-10 55.2 4.0 52 69-121 34-86 (159)
121 TIGR01680 Veg_Stor_Prot vegeta 98.0 4.2E-05 9E-10 55.4 8.0 45 68-112 142-189 (275)
122 PF03767 Acid_phosphat_B: HAD 98.0 3.9E-06 8.5E-11 59.8 2.7 42 70-111 114-158 (229)
123 PHA02530 pseT polynucleotide k 97.9 1.2E-05 2.6E-10 59.5 4.2 52 70-121 186-238 (300)
124 PTZ00174 phosphomannomutase; P 97.9 4.3E-05 9.3E-10 55.1 6.9 18 1-18 3-20 (247)
125 PF13344 Hydrolase_6: Haloacid 97.9 2.6E-05 5.7E-10 48.5 4.9 50 70-119 13-65 (101)
126 TIGR01456 CECR5 HAD-superfamil 97.9 3.8E-05 8.2E-10 57.5 6.4 46 73-118 18-71 (321)
127 PRK14502 bifunctional mannosyl 97.9 6E-05 1.3E-09 61.0 7.3 35 77-111 439-473 (694)
128 TIGR01486 HAD-SF-IIB-MPGP mann 97.9 5.9E-05 1.3E-09 54.5 6.6 36 76-111 21-56 (256)
129 TIGR01484 HAD-SF-IIB HAD-super 97.8 8.2E-05 1.8E-09 51.8 6.7 35 74-108 20-54 (204)
130 PRK03669 mannosyl-3-phosphogly 97.8 8.5E-05 1.8E-09 54.2 6.9 34 78-111 31-64 (271)
131 TIGR02251 HIF-SF_euk Dullard-l 97.8 3.7E-05 7.9E-10 52.0 4.5 50 69-119 40-90 (162)
132 PLN02499 glycerol-3-phosphate 97.7 0.00092 2E-08 52.4 11.6 103 3-111 8-133 (498)
133 TIGR02250 FCP1_euk FCP1-like p 97.6 9.5E-05 2.1E-09 49.6 4.5 50 69-119 56-107 (156)
134 PTZ00445 p36-lilke protein; Pr 97.6 0.00012 2.5E-09 51.2 5.0 66 71-136 75-162 (219)
135 TIGR02245 HAD_IIID1 HAD-superf 97.6 0.00016 3.4E-09 50.3 4.9 41 70-111 44-84 (195)
136 COG2503 Predicted secreted aci 97.5 0.00038 8.3E-09 49.4 6.5 46 68-113 119-168 (274)
137 PF09419 PGP_phosphatase: Mito 97.5 0.00068 1.5E-08 46.0 7.3 36 76-111 64-108 (168)
138 PRK10187 trehalose-6-phosphate 97.5 0.00029 6.4E-09 51.4 5.9 38 72-109 37-75 (266)
139 TIGR02726 phenyl_P_delta pheny 97.5 4.4E-05 9.6E-10 51.9 1.4 59 79-137 42-101 (169)
140 PF05822 UMPH-1: Pyrimidine 5' 97.4 0.00067 1.4E-08 48.6 6.4 75 55-131 72-150 (246)
141 TIGR01525 ATPase-IB_hvy heavy 97.4 0.00031 6.6E-09 56.5 5.3 49 70-118 383-432 (556)
142 TIGR01512 ATPase-IB2_Cd heavy 97.3 0.0004 8.8E-09 55.5 5.1 50 70-119 361-411 (536)
143 PF08235 LNS2: LNS2 (Lipin/Ned 97.2 0.0015 3.3E-08 43.7 6.1 37 72-108 28-67 (157)
144 COG0647 NagD Predicted sugar p 97.2 0.0009 2E-08 48.8 5.0 50 70-119 23-76 (269)
145 COG4030 Uncharacterized protei 97.1 0.0089 1.9E-07 42.4 8.8 64 47-111 58-122 (315)
146 PRK14501 putative bifunctional 97.0 0.002 4.3E-08 53.5 6.2 40 71-110 514-554 (726)
147 COG4502 5'(3')-deoxyribonucleo 96.9 0.00033 7.1E-09 45.7 1.0 111 1-119 1-121 (180)
148 KOG3128 Uncharacterized conser 96.8 0.0068 1.5E-07 43.5 6.4 64 56-119 121-186 (298)
149 PF05152 DUF705: Protein of un 96.7 0.0052 1.1E-07 44.8 5.4 51 71-121 142-192 (297)
150 COG0241 HisB Histidinol phosph 96.6 0.0046 9.9E-08 42.4 4.7 26 70-95 30-55 (181)
151 TIGR01511 ATPase-IB1_Cu copper 96.6 0.0042 9.1E-08 50.1 5.2 42 70-111 404-445 (562)
152 PLN02580 trehalose-phosphatase 96.6 0.0092 2E-07 45.7 6.4 38 70-108 140-177 (384)
153 PLN02205 alpha,alpha-trehalose 96.5 0.0089 1.9E-07 50.5 6.7 37 72-108 617-654 (854)
154 PF11019 DUF2608: Protein of u 96.4 0.027 5.9E-07 40.8 8.0 42 70-111 80-124 (252)
155 PF05761 5_nucleotid: 5' nucle 96.2 0.0093 2E-07 46.7 5.0 50 70-119 182-240 (448)
156 PRK10671 copA copper exporting 96.1 0.011 2.5E-07 49.8 5.2 49 70-118 649-697 (834)
157 TIGR02461 osmo_MPG_phos mannos 96.0 0.019 4.2E-07 40.8 5.4 38 75-112 19-56 (225)
158 PLN02151 trehalose-phosphatase 96.0 0.018 3.9E-07 43.7 5.2 36 70-106 119-154 (354)
159 TIGR02463 MPGP_rel mannosyl-3- 95.9 0.024 5.1E-07 40.0 5.3 36 76-111 21-56 (221)
160 PRK11033 zntA zinc/cadmium/mer 95.8 0.021 4.5E-07 47.7 5.4 44 70-113 567-610 (741)
161 COG2217 ZntA Cation transport 95.8 0.021 4.5E-07 47.3 5.2 49 70-118 536-584 (713)
162 TIGR01522 ATPase-IIA2_Ca golgi 95.8 0.02 4.4E-07 48.7 5.3 50 70-119 527-576 (884)
163 TIGR01497 kdpB K+-transporting 95.7 0.022 4.7E-07 46.9 5.0 46 70-115 445-490 (675)
164 PRK14010 potassium-transportin 95.7 0.026 5.7E-07 46.4 5.4 48 70-117 440-487 (673)
165 PRK01122 potassium-transportin 95.6 0.027 5.9E-07 46.4 5.3 46 70-115 444-489 (679)
166 PF13344 Hydrolase_6: Haloacid 95.6 0.033 7.1E-07 34.5 4.5 13 6-18 1-13 (101)
167 TIGR00099 Cof-subfamily Cof su 95.5 0.043 9.4E-07 39.6 5.5 37 75-111 20-56 (256)
168 TIGR01482 SPP-subfamily Sucros 95.1 0.056 1.2E-06 38.0 5.1 36 76-111 20-55 (225)
169 PF05116 S6PP: Sucrose-6F-phos 94.9 0.099 2.2E-06 37.8 5.8 34 85-119 33-66 (247)
170 TIGR02726 phenyl_P_delta pheny 94.9 0.015 3.2E-07 39.6 1.5 15 3-17 7-21 (169)
171 TIGR01460 HAD-SF-IIA Haloacid 94.6 0.1 2.3E-06 37.3 5.4 49 71-119 14-66 (236)
172 PLN03063 alpha,alpha-trehalose 94.6 0.094 2E-06 44.2 5.7 40 70-109 531-571 (797)
173 TIGR01647 ATPase-IIIA_H plasma 94.3 0.096 2.1E-06 43.9 5.3 43 70-112 441-483 (755)
174 PLN02423 phosphomannomutase 94.2 0.033 7.1E-07 40.2 2.1 16 3-18 6-22 (245)
175 KOG2882 p-Nitrophenyl phosphat 94.2 0.092 2E-06 38.8 4.2 43 69-111 36-81 (306)
176 TIGR01482 SPP-subfamily Sucros 94.0 0.023 5E-07 40.0 1.0 13 6-18 1-13 (225)
177 PLN03064 alpha,alpha-trehalose 93.8 0.17 3.6E-06 43.3 5.7 41 70-110 621-662 (934)
178 KOG2470 Similar to IMP-GMP spe 93.8 0.065 1.4E-06 40.5 2.9 50 70-119 239-291 (510)
179 TIGR01524 ATPase-IIIB_Mg magne 93.3 0.18 3.9E-06 43.0 5.2 42 70-111 514-555 (867)
180 TIGR01116 ATPase-IIA1_Ca sarco 93.2 0.2 4.3E-06 43.0 5.3 43 70-112 536-578 (917)
181 COG1778 Low specificity phosph 93.2 0.21 4.6E-06 33.5 4.3 58 79-136 43-101 (170)
182 PRK10517 magnesium-transportin 93.1 0.19 4.1E-06 43.1 5.0 42 70-111 549-590 (902)
183 PRK15122 magnesium-transportin 93.0 0.19 4.2E-06 43.0 5.0 42 70-111 549-590 (903)
184 COG1778 Low specificity phosph 93.0 0.06 1.3E-06 36.0 1.5 16 2-17 7-22 (170)
185 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.0 0.0078 1.7E-07 43.7 -2.9 48 72-119 121-168 (257)
186 TIGR02461 osmo_MPG_phos mannos 92.9 0.048 1E-06 38.8 1.1 13 5-17 1-13 (225)
187 TIGR00099 Cof-subfamily Cof su 92.9 0.051 1.1E-06 39.2 1.2 14 5-18 1-14 (256)
188 COG5663 Uncharacterized conser 92.7 0.49 1.1E-05 32.1 5.5 49 68-117 69-118 (194)
189 KOG4549 Magnesium-dependent ph 92.5 0.27 5.9E-06 31.7 4.0 44 68-111 41-85 (144)
190 TIGR02463 MPGP_rel mannosyl-3- 92.5 0.074 1.6E-06 37.4 1.6 13 6-18 2-14 (221)
191 COG5083 SMP2 Uncharacterized p 92.5 0.096 2.1E-06 40.7 2.2 27 3-29 375-401 (580)
192 TIGR01517 ATPase-IIB_Ca plasma 92.4 0.29 6.2E-06 42.2 5.2 42 70-111 578-619 (941)
193 TIGR01523 ATPase-IID_K-Na pota 92.3 0.31 6.6E-06 42.5 5.3 42 70-111 645-686 (1053)
194 TIGR01459 HAD-SF-IIA-hyp4 HAD- 92.2 0.034 7.3E-07 39.9 -0.5 44 73-117 140-183 (242)
195 TIGR01106 ATPase-IIC_X-K sodiu 92.0 0.32 7E-06 42.2 5.1 42 70-111 567-608 (997)
196 KOG2116 Protein involved in pl 92.0 0.49 1.1E-05 38.7 5.7 28 3-30 530-557 (738)
197 KOG0207 Cation transport ATPas 92.0 0.34 7.5E-06 41.0 5.0 42 70-111 722-763 (951)
198 TIGR00685 T6PP trehalose-phosp 91.8 0.11 2.4E-06 37.3 1.8 15 3-17 3-17 (244)
199 KOG3040 Predicted sugar phosph 91.5 0.54 1.2E-05 33.2 4.8 50 70-119 22-74 (262)
200 TIGR01657 P-ATPase-V P-type AT 91.4 0.42 9.1E-06 41.7 5.2 43 70-112 655-697 (1054)
201 TIGR01485 SPP_plant-cyano sucr 91.0 0.44 9.5E-06 34.3 4.3 36 76-111 26-61 (249)
202 TIGR01494 ATPase_P-type ATPase 90.7 0.65 1.4E-05 37.0 5.4 41 70-110 346-386 (499)
203 COG0474 MgtA Cation transport 90.5 0.62 1.3E-05 40.1 5.3 45 69-113 545-589 (917)
204 TIGR01460 HAD-SF-IIA Haloacid 90.3 0.13 2.8E-06 36.9 1.0 13 6-18 1-13 (236)
205 TIGR01452 PGP_euk phosphoglyco 90.2 0.026 5.6E-07 41.4 -2.7 46 72-118 144-190 (279)
206 PF06189 5-nucleotidase: 5'-nu 89.9 0.36 7.9E-06 35.0 2.9 27 5-32 123-149 (264)
207 COG0731 Fe-S oxidoreductases [ 89.6 0.73 1.6E-05 34.2 4.4 37 69-105 90-127 (296)
208 COG0647 NagD Predicted sugar p 89.6 0.17 3.7E-06 37.1 1.1 16 3-18 8-23 (269)
209 COG3769 Predicted hydrolase (H 89.4 1.7 3.6E-05 31.1 5.8 37 76-112 28-64 (274)
210 TIGR02471 sucr_syn_bact_C sucr 89.2 0.17 3.7E-06 36.0 0.9 14 5-18 1-14 (236)
211 TIGR01652 ATPase-Plipid phosph 89.0 0.64 1.4E-05 40.6 4.3 43 70-112 630-672 (1057)
212 COG3700 AphA Acid phosphatase 89.0 0.93 2E-05 31.2 4.2 42 71-112 114-159 (237)
213 COG4087 Soluble P-type ATPase 88.9 0.89 1.9E-05 29.7 3.9 41 70-111 29-69 (152)
214 KOG0202 Ca2+ transporting ATPa 88.3 1.2 2.7E-05 37.6 5.2 46 70-115 583-628 (972)
215 COG2216 KdpB High-affinity K+ 88.0 1.2 2.6E-05 35.7 4.8 45 70-114 446-490 (681)
216 TIGR01485 SPP_plant-cyano sucr 87.7 0.36 7.8E-06 34.7 1.8 13 4-16 2-14 (249)
217 PF13911 AhpC-TSA_2: AhpC/TSA 87.3 1.8 3.8E-05 27.1 4.6 48 78-128 4-53 (115)
218 COG1877 OtsB Trehalose-6-phosp 86.7 0.44 9.6E-06 34.9 1.8 15 3-17 18-32 (266)
219 TIGR02471 sucr_syn_bact_C sucr 86.7 1.4 3.1E-05 31.3 4.4 40 78-119 22-61 (236)
220 KOG2630 Enolase-phosphatase E- 86.7 1.4 3.1E-05 31.5 4.2 50 70-119 122-178 (254)
221 PLN03017 trehalose-phosphatase 85.8 0.46 1E-05 36.4 1.5 13 3-15 111-123 (366)
222 smart00577 CPDc catalytic doma 85.4 0.59 1.3E-05 30.9 1.8 16 3-18 2-17 (148)
223 TIGR02251 HIF-SF_euk Dullard-l 85.1 0.58 1.3E-05 31.5 1.6 15 4-18 2-16 (162)
224 PF05152 DUF705: Protein of un 85.0 0.65 1.4E-05 34.2 1.9 17 3-19 122-138 (297)
225 KOG0323 TFIIF-interacting CTD 84.9 1.7 3.8E-05 35.7 4.4 49 70-119 200-250 (635)
226 TIGR02250 FCP1_euk FCP1-like p 84.9 0.71 1.5E-05 31.0 1.9 17 3-19 6-22 (156)
227 PLN03190 aminophospholipid tra 84.7 2.1 4.5E-05 38.0 5.1 42 70-111 725-766 (1178)
228 PF03332 PMM: Eukaryotic phosp 84.7 1.4 3.1E-05 31.2 3.5 43 76-119 1-43 (220)
229 KOG1618 Predicted phosphatase 84.2 3 6.5E-05 31.5 5.0 97 4-112 36-142 (389)
230 smart00540 LEM in nuclear memb 84.1 1.2 2.6E-05 23.1 2.1 32 77-108 9-40 (44)
231 KOG2134 Polynucleotide kinase 83.9 0.68 1.5E-05 35.6 1.6 17 3-19 75-91 (422)
232 PRK13762 tRNA-modifying enzyme 83.2 2.9 6.2E-05 31.6 4.8 31 69-99 140-170 (322)
233 TIGR02495 NrdG2 anaerobic ribo 80.0 6.3 0.00014 27.0 5.3 31 69-99 72-102 (191)
234 TIGR03365 Bsubt_queE 7-cyano-7 79.9 2.3 4.9E-05 30.6 3.1 30 70-99 83-112 (238)
235 KOG2882 p-Nitrophenyl phosphat 79.4 5.5 0.00012 29.7 4.9 16 3-18 22-37 (306)
236 COG1121 ZnuC ABC-type Mn/Zn tr 79.0 22 0.00048 26.0 7.9 34 76-119 178-211 (254)
237 PF02358 Trehalose_PPase: Treh 78.5 1.1 2.3E-05 32.0 1.1 12 7-18 1-12 (235)
238 COG3769 Predicted hydrolase (H 77.8 1.6 3.5E-05 31.2 1.7 15 3-17 7-21 (274)
239 cd05008 SIS_GlmS_GlmD_1 SIS (S 77.4 4.9 0.00011 25.3 3.9 33 71-103 57-89 (126)
240 COG0241 HisB Histidinol phosph 77.2 1.7 3.6E-05 30.0 1.7 17 3-19 5-21 (181)
241 PRK10076 pyruvate formate lyas 76.1 8.8 0.00019 27.2 5.1 37 70-106 49-88 (213)
242 PLN02382 probable sucrose-phos 75.9 2.1 4.5E-05 33.5 2.1 15 3-17 9-23 (413)
243 cd02071 MM_CoA_mut_B12_BD meth 75.7 11 0.00024 23.9 5.1 45 72-116 63-109 (122)
244 cd05014 SIS_Kpsf KpsF-like pro 74.1 5.2 0.00011 25.3 3.3 34 70-103 57-90 (128)
245 TIGR02826 RNR_activ_nrdG3 anae 73.2 13 0.00027 24.7 5.0 28 72-99 73-100 (147)
246 PLN03017 trehalose-phosphatase 73.0 7.6 0.00017 29.9 4.4 34 71-105 133-166 (366)
247 KOG3040 Predicted sugar phosph 72.3 8.1 0.00018 27.5 4.0 17 2-18 6-22 (262)
248 COG1877 OtsB Trehalose-6-phosp 71.8 8 0.00017 28.4 4.1 42 69-110 38-80 (266)
249 KOG0204 Calcium transporting A 71.5 9.1 0.0002 32.9 4.7 44 70-113 646-689 (1034)
250 KOG0206 P-type ATPase [General 71.2 27 0.00058 31.2 7.6 42 70-111 650-691 (1151)
251 PRK05301 pyrroloquinoline quin 70.7 12 0.00026 28.7 5.2 30 69-98 72-101 (378)
252 cd05710 SIS_1 A subgroup of th 70.6 8.4 0.00018 24.3 3.6 33 70-102 57-89 (120)
253 cd05017 SIS_PGI_PMI_1 The memb 70.0 15 0.00033 23.0 4.8 38 70-109 53-90 (119)
254 TIGR02109 PQQ_syn_pqqE coenzym 69.5 13 0.00029 28.2 5.1 29 69-97 63-91 (358)
255 PF00875 DNA_photolyase: DNA p 69.5 6.4 0.00014 26.3 3.1 39 73-111 52-90 (165)
256 PF01380 SIS: SIS domain SIS d 69.4 11 0.00025 23.6 4.2 35 70-104 63-97 (131)
257 PF00578 AhpC-TSA: AhpC/TSA fa 69.3 12 0.00026 23.2 4.2 37 74-110 46-82 (124)
258 TIGR03127 RuMP_HxlB 6-phospho 67.6 9.8 0.00021 25.8 3.7 35 70-104 82-116 (179)
259 TIGR03470 HpnH hopanoid biosyn 67.2 6.7 0.00014 29.5 3.0 31 69-99 82-112 (318)
260 PF00072 Response_reg: Respons 66.1 22 0.00048 21.3 4.9 40 74-113 56-97 (112)
261 TIGR03278 methan_mark_10 putat 64.7 18 0.0004 28.3 5.0 28 70-97 85-113 (404)
262 PLN02423 phosphomannomutase 64.6 15 0.00032 26.5 4.3 37 70-107 23-59 (245)
263 KOG1605 TFIIF-interacting CTD 64.4 4.6 9.9E-05 29.6 1.6 39 70-109 130-168 (262)
264 cd05006 SIS_GmhA Phosphoheptos 63.8 11 0.00024 25.5 3.4 31 70-100 111-141 (177)
265 PF02358 Trehalose_PPase: Treh 63.7 12 0.00026 26.6 3.7 37 69-105 17-54 (235)
266 cd05013 SIS_RpiR RpiR-like pro 63.0 14 0.0003 23.3 3.6 30 73-102 73-102 (139)
267 TIGR00640 acid_CoA_mut_C methy 62.5 29 0.00062 22.5 5.0 43 73-115 67-111 (132)
268 TIGR02494 PFLE_PFLC glycyl-rad 62.1 21 0.00046 26.3 4.9 29 70-98 136-165 (295)
269 PF03020 LEM: LEM domain; Int 62.0 0.91 2E-05 23.5 -1.7 30 78-107 10-39 (43)
270 TIGR01658 EYA-cons_domain eyes 62.0 4.2 9E-05 29.5 1.0 15 3-17 2-16 (274)
271 TIGR02493 PFLA pyruvate format 61.9 27 0.00058 24.7 5.2 38 70-107 76-118 (235)
272 PRK11145 pflA pyruvate formate 60.7 14 0.0003 26.5 3.6 29 70-98 81-110 (246)
273 PRK13937 phosphoheptose isomer 60.3 16 0.00035 25.1 3.7 34 70-103 116-149 (188)
274 TIGR00441 gmhA phosphoheptose 59.9 14 0.00031 24.4 3.3 33 70-102 89-121 (154)
275 KOG0209 P-type ATPase [Inorgan 59.8 29 0.00062 30.1 5.5 43 70-112 674-716 (1160)
276 TIGR02765 crypto_DASH cryptoch 58.3 17 0.00038 28.4 4.0 33 78-110 65-97 (429)
277 cd05005 SIS_PHI Hexulose-6-pho 58.0 18 0.00038 24.5 3.6 33 70-102 85-117 (179)
278 cd03018 PRX_AhpE_like Peroxire 57.6 36 0.00077 21.9 4.9 15 82-96 79-93 (149)
279 TIGR02886 spore_II_AA anti-sig 57.1 31 0.00066 20.9 4.3 35 78-114 62-96 (106)
280 KOG3107 Predicted haloacid deh 57.1 9.4 0.0002 29.6 2.2 15 4-18 198-212 (468)
281 KOG0541 Alkyl hydroperoxide re 56.7 35 0.00075 23.1 4.5 43 71-113 62-105 (171)
282 PRK00414 gmhA phosphoheptose i 55.9 21 0.00046 24.7 3.8 32 72-103 123-154 (192)
283 smart00497 IENR1 Intron encode 55.5 19 0.00042 18.7 2.8 28 3-30 2-30 (53)
284 COG4850 Uncharacterized conser 54.8 29 0.00064 26.4 4.4 34 69-102 194-228 (373)
285 cd03017 PRX_BCP Peroxiredoxin 54.6 43 0.00094 21.2 4.9 20 78-97 70-89 (140)
286 KOG3189 Phosphomannomutase [Li 53.9 29 0.00063 24.6 4.0 48 70-119 27-74 (252)
287 TIGR03556 photolyase_8HDF deox 53.9 23 0.00051 28.2 4.1 39 73-111 54-92 (471)
288 KOG2469 IMP-GMP specific 5'-nu 53.8 42 0.0009 26.4 5.2 48 72-119 199-249 (424)
289 cd04795 SIS SIS domain. SIS (S 53.4 22 0.00047 20.5 3.1 24 71-94 58-81 (87)
290 PF13588 HSDR_N_2: Type I rest 53.3 20 0.00043 22.2 3.0 26 74-99 68-93 (112)
291 PF12990 DUF3874: Domain of un 52.9 39 0.00085 19.6 3.9 35 75-111 27-61 (73)
292 COG2044 Predicted peroxiredoxi 52.8 22 0.00048 22.8 3.1 29 70-98 58-86 (120)
293 PRK13938 phosphoheptose isomer 52.6 25 0.00054 24.6 3.6 34 70-103 123-156 (196)
294 COG1180 PflA Pyruvate-formate 52.6 19 0.00041 26.3 3.2 27 73-99 98-124 (260)
295 COG1117 PstB ABC-type phosphat 52.2 21 0.00045 25.8 3.1 26 75-101 187-212 (253)
296 PF13704 Glyco_tranf_2_4: Glyc 51.6 46 0.00099 19.7 4.4 10 74-83 31-40 (97)
297 TIGR00591 phr2 photolyase PhrI 51.4 28 0.0006 27.6 4.1 39 73-111 77-115 (454)
298 TIGR00377 ant_ant_sig anti-ant 51.3 39 0.00085 20.4 4.1 37 77-115 65-101 (108)
299 PF10740 DUF2529: Protein of u 51.2 23 0.00049 24.3 3.1 21 74-94 95-115 (172)
300 COG0602 NrdG Organic radical a 51.0 19 0.00042 25.4 2.9 28 72-99 84-111 (212)
301 cd07043 STAS_anti-anti-sigma_f 50.6 42 0.00092 19.6 4.1 37 77-115 60-96 (99)
302 PF08620 RPAP1_C: RPAP1-like, 50.3 6.5 0.00014 22.8 0.4 10 6-15 3-12 (73)
303 KOG1154 Gamma-glutamyl kinase 49.9 33 0.00071 25.0 3.9 34 74-107 35-68 (285)
304 PF06757 Ins_allergen_rp: Inse 49.7 38 0.00082 23.2 4.1 27 64-90 146-172 (179)
305 PRK11382 frlB fructoselysine-6 49.5 29 0.00062 26.4 3.9 35 72-106 104-138 (340)
306 PF05761 5_nucleotid: 5' nucle 48.8 9.3 0.0002 30.3 1.1 16 3-18 12-27 (448)
307 TIGR00221 nagA N-acetylglucosa 48.6 84 0.0018 24.4 6.3 35 73-107 176-211 (380)
308 cd04906 ACT_ThrD-I_1 First of 48.3 25 0.00054 20.7 2.7 25 74-98 53-77 (85)
309 cd06589 GH31 The enzymes of gl 48.1 23 0.0005 25.8 3.1 29 70-98 62-90 (265)
310 PRK13936 phosphoheptose isomer 47.9 31 0.00067 24.0 3.5 32 72-103 123-154 (197)
311 PF00696 AA_kinase: Amino acid 47.3 37 0.0008 24.0 4.0 39 74-113 20-58 (242)
312 PF12261 T_hemolysin: Thermost 47.2 51 0.0011 22.7 4.4 52 58-111 82-138 (179)
313 PF14829 GPAT_N: Glycerol-3-ph 47.0 8.1 0.00017 22.5 0.4 52 64-118 19-70 (77)
314 cd03013 PRX5_like Peroxiredoxi 47.0 66 0.0014 21.3 4.9 36 75-110 52-88 (155)
315 cd02072 Glm_B12_BD B12 binding 46.7 51 0.0011 21.4 4.1 45 71-115 62-114 (128)
316 COG3882 FkbH Predicted enzyme 46.7 12 0.00026 30.0 1.4 15 3-17 222-236 (574)
317 PF06434 Aconitase_2_N: Aconit 46.5 34 0.00073 24.0 3.4 35 71-105 37-76 (204)
318 smart00851 MGS MGS-like domain 46.2 29 0.00064 20.5 2.9 23 76-99 2-24 (90)
319 PRK11557 putative DNA-binding 45.7 33 0.00071 25.0 3.6 34 71-104 186-219 (278)
320 COG0678 AHP1 Peroxiredoxin [Po 45.5 68 0.0015 21.6 4.5 41 72-112 57-98 (165)
321 PRK13717 conjugal transfer pro 45.1 9.9 0.00021 24.6 0.6 15 2-16 44-58 (128)
322 COG0263 ProB Glutamate 5-kinas 45.1 27 0.00059 26.9 3.0 24 75-98 32-55 (369)
323 TIGR02468 sucrsPsyn_pln sucros 44.9 45 0.00098 29.6 4.6 46 75-120 788-838 (1050)
324 PRK15482 transcriptional regul 44.6 36 0.00078 25.0 3.6 34 70-103 192-225 (285)
325 cd06595 GH31_xylosidase_XylS-l 44.5 29 0.00062 25.8 3.1 27 70-96 70-96 (292)
326 COG1763 MobB Molybdopterin-gua 44.1 28 0.0006 23.6 2.7 23 76-98 19-41 (161)
327 PRK02261 methylaspartate mutas 44.1 89 0.0019 20.4 6.9 46 70-115 65-118 (137)
328 PRK10886 DnaA initiator-associ 43.8 36 0.00078 23.8 3.3 33 72-104 121-153 (196)
329 PF05988 DUF899: Bacterial pro 43.7 66 0.0014 22.9 4.6 39 73-111 92-130 (211)
330 TIGR02668 moaA_archaeal probab 43.4 31 0.00068 25.5 3.2 30 69-98 66-96 (302)
331 PF05240 APOBEC_C: APOBEC-like 43.1 38 0.00081 18.5 2.6 22 74-95 2-23 (55)
332 cd02970 PRX_like2 Peroxiredoxi 42.8 80 0.0017 20.1 4.8 34 77-110 47-80 (149)
333 cd05007 SIS_Etherase N-acetylm 42.8 45 0.00098 24.3 3.9 33 71-103 129-161 (257)
334 PRK11543 gutQ D-arabinose 5-ph 42.6 42 0.00091 25.0 3.8 35 70-104 99-133 (321)
335 PF06901 FrpC: RTX iron-regula 42.5 16 0.00034 25.6 1.3 14 4-17 59-72 (271)
336 PLN02382 probable sucrose-phos 42.4 52 0.0011 25.8 4.4 35 77-111 35-69 (413)
337 PHA02416 hypothetical protein 42.3 33 0.0007 21.8 2.6 31 74-104 12-42 (167)
338 PF03193 DUF258: Protein of un 42.2 47 0.001 22.5 3.6 32 77-108 2-33 (161)
339 PF08444 Gly_acyl_tr_C: Aralky 42.2 71 0.0015 19.3 4.0 34 78-111 43-76 (89)
340 cd02971 PRX_family Peroxiredox 41.9 83 0.0018 19.8 4.7 10 87-96 79-88 (140)
341 PRK11337 DNA-binding transcrip 41.7 45 0.00098 24.5 3.8 32 72-103 199-230 (292)
342 cd07041 STAS_RsbR_RsbS_like Su 41.3 71 0.0015 19.4 4.2 33 78-112 64-96 (109)
343 cd06591 GH31_xylosidase_XylS X 41.1 34 0.00074 25.7 3.1 25 70-94 62-86 (319)
344 cd06539 CIDE_N_A CIDE_N domain 40.9 19 0.00041 21.2 1.3 15 4-18 41-55 (78)
345 PF13686 DrsE_2: DsrE/DsrF/Drs 40.9 28 0.0006 23.2 2.3 24 73-96 90-113 (148)
346 PF01113 DapB_N: Dihydrodipico 40.6 70 0.0015 20.3 4.1 36 72-107 76-111 (124)
347 TIGR00685 T6PP trehalose-phosp 40.5 37 0.0008 24.3 3.1 32 70-101 24-56 (244)
348 PF08328 ASL_C: Adenylosuccina 40.4 59 0.0013 20.7 3.6 43 46-88 72-114 (115)
349 cd06537 CIDE_N_B CIDE_N domain 40.3 19 0.00042 21.3 1.3 15 4-18 40-54 (81)
350 COG1366 SpoIIAA Anti-anti-sigm 40.3 75 0.0016 19.7 4.2 35 78-114 67-101 (117)
351 PF01976 DUF116: Protein of un 40.1 29 0.00064 23.3 2.4 35 75-111 74-108 (158)
352 cd03409 Chelatase_Class_II Cla 40.1 40 0.00086 20.1 2.8 22 72-93 43-64 (101)
353 PF01993 MTD: methylene-5,6,7, 40.1 53 0.0011 24.0 3.7 42 70-111 69-110 (276)
354 PRK01018 50S ribosomal protein 40.0 88 0.0019 19.1 5.2 40 66-105 11-50 (99)
355 PF13394 Fer4_14: 4Fe-4S singl 40.0 12 0.00027 23.2 0.5 30 74-103 65-96 (119)
356 KOG2961 Predicted hydrolase (H 39.9 21 0.00045 24.2 1.5 16 2-17 42-57 (190)
357 cd06594 GH31_glucosidase_YihQ 39.7 34 0.00073 25.8 2.9 26 70-95 67-92 (317)
358 COG1737 RpiR Transcriptional r 39.6 41 0.00088 24.8 3.3 34 72-105 189-222 (281)
359 PF12345 DUF3641: Protein of u 39.5 17 0.00038 23.7 1.1 18 1-18 68-85 (134)
360 PRK00994 F420-dependent methyl 39.4 62 0.0013 23.6 3.9 41 71-111 71-111 (277)
361 cd04256 AAK_P5CS_ProBA AAK_P5C 39.3 51 0.0011 24.4 3.7 32 76-107 36-67 (284)
362 cd06593 GH31_xylosidase_YicI Y 39.2 38 0.00083 25.2 3.1 26 70-95 62-87 (308)
363 COG1225 Bcp Peroxiredoxin [Pos 39.0 1.1E+02 0.0024 20.6 4.9 34 78-111 55-88 (157)
364 KOG1618 Predicted phosphatase 38.6 53 0.0012 25.1 3.6 51 68-118 48-106 (389)
365 smart00266 CAD Domains present 38.3 20 0.00042 20.9 1.1 15 4-18 39-53 (74)
366 PF01740 STAS: STAS domain; I 38.2 39 0.00084 20.8 2.6 36 77-114 70-105 (117)
367 PRK02947 hypothetical protein; 38.0 46 0.00099 24.1 3.2 29 70-98 116-144 (246)
368 cd06592 GH31_glucosidase_KIAA1 38.0 41 0.0009 25.1 3.1 27 70-96 66-92 (303)
369 PRK13602 putative ribosomal pr 37.9 85 0.0019 18.4 3.9 31 69-99 9-40 (82)
370 cd06598 GH31_transferase_CtsZ 37.9 42 0.00091 25.2 3.1 26 70-95 66-91 (317)
371 PF13439 Glyco_transf_4: Glyco 37.3 48 0.001 21.4 3.1 24 76-99 18-41 (177)
372 TIGR00274 N-acetylmuramic acid 37.2 60 0.0013 24.2 3.8 31 72-102 138-168 (291)
373 TIGR00761 argB acetylglutamate 37.1 90 0.002 22.1 4.6 38 73-111 15-52 (231)
374 PRK05441 murQ N-acetylmuramic 37.0 59 0.0013 24.3 3.8 31 72-102 143-173 (299)
375 cd06599 GH31_glycosidase_Aec37 36.8 44 0.00095 25.1 3.1 26 70-95 69-94 (317)
376 PF02606 LpxK: Tetraacyldisacc 36.5 45 0.00097 25.3 3.1 27 73-99 51-77 (326)
377 PF14682 SPOB_ab: Sporulation 36.2 22 0.00047 22.6 1.2 22 4-26 74-95 (115)
378 PRK10892 D-arabinose 5-phospha 36.1 52 0.0011 24.6 3.4 32 71-102 105-136 (326)
379 PF06437 ISN1: IMP-specific 5' 36.1 46 0.001 26.0 3.0 45 70-114 165-210 (408)
380 PF11181 YflT: Heat induced st 36.0 71 0.0015 19.6 3.5 25 74-98 10-37 (103)
381 cd06597 GH31_transferase_CtsY 35.8 46 0.001 25.3 3.1 25 71-95 82-106 (340)
382 PF13580 SIS_2: SIS domain; PD 35.7 47 0.001 21.5 2.8 26 70-95 113-138 (138)
383 COG1927 Mtd Coenzyme F420-depe 35.2 91 0.002 22.3 4.1 46 70-119 70-115 (277)
384 PF13353 Fer4_12: 4Fe-4S singl 35.1 61 0.0013 20.5 3.3 27 73-99 69-96 (139)
385 TIGR00393 kpsF KpsF/GutQ famil 35.0 44 0.00095 24.1 2.8 33 70-102 57-89 (268)
386 cd06603 GH31_GANC_GANAB_alpha 34.9 48 0.001 25.2 3.1 26 70-95 60-85 (339)
387 COG1911 RPL30 Ribosomal protei 34.7 1.1E+02 0.0025 18.8 5.0 46 63-108 11-56 (100)
388 PRK13361 molybdenum cofactor b 34.7 1.1E+02 0.0023 23.1 4.9 30 69-98 71-102 (329)
389 PTZ00106 60S ribosomal protein 34.6 94 0.002 19.4 3.9 36 67-102 21-56 (108)
390 smart00481 POLIIIAc DNA polyme 34.6 68 0.0015 17.6 3.0 23 75-97 16-38 (67)
391 KOG0203 Na+/K+ ATPase, alpha s 34.2 35 0.00075 29.6 2.3 42 70-111 589-630 (1019)
392 cd01335 Radical_SAM Radical SA 33.8 1.3E+02 0.0028 19.8 4.9 27 72-98 57-85 (204)
393 PRK09437 bcp thioredoxin-depen 33.6 1.4E+02 0.0029 19.4 4.9 20 77-96 76-95 (154)
394 COG2810 Predicted type IV rest 33.5 60 0.0013 23.6 3.1 27 72-98 82-108 (284)
395 cd01615 CIDE_N CIDE_N domain, 33.4 27 0.00058 20.6 1.2 15 4-18 41-55 (78)
396 cd06536 CIDE_N_ICAD CIDE_N dom 33.4 26 0.00057 20.7 1.1 15 4-18 43-57 (80)
397 PLN02588 glycerol-3-phosphate 33.3 26 0.00057 28.4 1.5 28 82-110 141-169 (525)
398 cd01423 MGS_CPS_I_III Methylgl 33.2 57 0.0012 20.3 2.8 17 75-91 14-30 (116)
399 TIGR02666 moaA molybdenum cofa 33.1 1.3E+02 0.0028 22.7 5.1 30 69-98 69-100 (334)
400 PRK10674 deoxyribodipyrimidine 33.0 77 0.0017 25.4 4.1 37 75-111 58-98 (472)
401 PF02635 DrsE: DsrE/DsrF-like 33.0 31 0.00068 21.1 1.6 27 70-96 57-84 (122)
402 PF09001 DUF1890: Domain of un 32.9 48 0.001 21.8 2.4 26 73-98 13-38 (139)
403 PF02593 dTMP_synthase: Thymid 32.8 1.3E+02 0.0028 21.5 4.7 50 70-119 58-113 (217)
404 PF02142 MGS: MGS-like domain 32.8 96 0.0021 18.5 3.7 32 75-111 1-32 (95)
405 KOG2599 Pyridoxal/pyridoxine/p 32.6 56 0.0012 24.3 2.9 30 70-99 163-192 (308)
406 PF08781 DP: Transcription fac 32.2 32 0.00069 22.8 1.5 27 4-30 79-105 (142)
407 PF04312 DUF460: Protein of un 32.0 1.4E+02 0.003 19.8 4.3 35 75-109 64-100 (138)
408 PRK00331 glucosamine--fructose 32.0 61 0.0013 26.7 3.4 36 71-106 347-382 (604)
409 PF08445 FR47: FR47-like prote 31.8 1.1E+02 0.0024 17.9 4.8 36 77-112 44-79 (86)
410 cd06600 GH31_MGAM-like This fa 31.7 57 0.0012 24.5 3.0 25 70-94 60-84 (317)
411 TIGR02803 ExbD_1 TonB system t 31.7 72 0.0016 20.2 3.1 27 69-95 94-121 (122)
412 PF08484 Methyltransf_14: C-me 31.4 1.6E+02 0.0036 19.7 5.0 46 72-119 53-99 (160)
413 PLN02951 Molybderin biosynthes 31.4 1.4E+02 0.0031 23.1 5.1 30 69-98 116-147 (373)
414 KOG0023 Alcohol dehydrogenase, 31.2 97 0.0021 23.8 4.0 33 80-113 198-230 (360)
415 PF13756 Stimulus_sens_1: Stim 31.1 38 0.00083 21.3 1.7 16 3-18 19-35 (112)
416 COG3882 FkbH Predicted enzyme 31.1 83 0.0018 25.6 3.8 39 71-109 255-293 (574)
417 PRK12570 N-acetylmuramic acid- 31.0 86 0.0019 23.4 3.8 31 72-102 139-169 (296)
418 PF07453 NUMOD1: NUMOD1 domain 30.9 70 0.0015 15.3 2.9 28 4-31 2-30 (37)
419 cd01421 IMPCH Inosine monophos 30.9 64 0.0014 22.5 2.9 28 73-101 10-37 (187)
420 PRK01395 V-type ATP synthase s 30.9 70 0.0015 19.8 2.8 44 74-118 32-75 (104)
421 cd05009 SIS_GlmS_GlmD_2 SIS (S 30.4 82 0.0018 20.2 3.3 25 74-98 76-100 (153)
422 COG1393 ArsC Arsenate reductas 30.3 1.1E+02 0.0024 19.4 3.8 42 76-119 14-59 (117)
423 cd08612 GDPD_GDE4 Glycerophosp 30.3 1.4E+02 0.0029 22.3 4.8 40 76-120 250-289 (300)
424 TIGR02766 crypt_chrom_pln cryp 30.3 86 0.0019 25.0 3.9 9 76-84 75-83 (475)
425 cd00532 MGS-like MGS-like doma 30.1 73 0.0016 19.7 2.9 14 77-90 15-28 (112)
426 cd02067 B12-binding B12 bindin 30.1 1.4E+02 0.003 18.5 4.2 41 72-112 63-105 (119)
427 PRK13601 putative L7Ae-like ri 30.0 1.2E+02 0.0027 17.9 3.9 34 71-104 8-42 (82)
428 cd06844 STAS Sulphate Transpor 29.9 1.3E+02 0.0028 18.0 4.1 34 77-112 61-94 (100)
429 cd06604 GH31_glucosidase_II_Ma 29.6 63 0.0014 24.5 2.9 25 70-94 60-84 (339)
430 cd03334 Fab1_TCP TCP-1 like do 29.5 1.5E+02 0.0032 21.7 4.8 36 76-111 119-154 (261)
431 TIGR02744 TrbI_Ftype type-F co 29.3 25 0.00053 22.3 0.6 14 3-16 32-45 (112)
432 PLN00094 aconitate hydratase 2 29.3 99 0.0022 27.1 4.2 34 72-105 274-315 (938)
433 COG5012 Predicted cobalamin bi 29.3 83 0.0018 22.6 3.2 44 72-115 168-212 (227)
434 cd04246 AAK_AK-DapG-like AAK_A 29.3 99 0.0021 22.0 3.8 33 74-106 18-50 (239)
435 PRK13402 gamma-glutamyl kinase 29.1 64 0.0014 25.0 2.9 23 75-97 31-53 (368)
436 TIGR01501 MthylAspMutase methy 29.0 1.6E+02 0.0035 19.2 4.4 45 71-115 64-116 (134)
437 PF07611 DUF1574: Protein of u 29.0 1.5E+02 0.0032 22.9 4.7 42 74-115 252-293 (345)
438 PF03807 F420_oxidored: NADP o 28.9 1.3E+02 0.0028 17.6 4.6 34 78-111 13-49 (96)
439 PF03465 eRF1_3: eRF1 domain 3 28.9 1.5E+02 0.0033 18.5 4.4 32 76-108 71-102 (113)
440 COG1436 NtpG Archaeal/vacuolar 28.8 82 0.0018 19.6 2.9 44 75-118 34-77 (104)
441 cd03012 TlpA_like_DipZ_like Tl 28.7 1.1E+02 0.0023 19.2 3.5 37 74-110 43-85 (126)
442 cd06602 GH31_MGAM_SI_GAA This 28.5 63 0.0014 24.6 2.8 26 70-95 60-87 (339)
443 CHL00202 argB acetylglutamate 28.4 1.4E+02 0.0031 22.0 4.6 41 73-114 41-81 (284)
444 TIGR01135 glmS glucosamine--fr 28.4 76 0.0016 26.2 3.4 35 71-105 349-383 (607)
445 PF01968 Hydantoinase_A: Hydan 28.3 32 0.00068 25.6 1.1 14 4-17 78-91 (290)
446 TIGR03882 cyclo_dehyd_2 bacter 28.2 1.7E+02 0.0037 20.3 4.7 34 77-112 97-132 (193)
447 PF02017 CIDE-N: CIDE-N domain 28.1 52 0.0011 19.4 1.8 14 5-18 42-55 (78)
448 PF04015 DUF362: Domain of unk 28.1 1.4E+02 0.0031 20.6 4.4 40 76-115 25-67 (206)
449 COG1663 LpxK Tetraacyldisaccha 28.1 77 0.0017 24.3 3.1 28 72-99 62-89 (336)
450 PRK00652 lpxK tetraacyldisacch 27.8 76 0.0016 24.1 3.1 25 73-97 65-89 (325)
451 TIGR00682 lpxK tetraacyldisacc 27.8 76 0.0017 23.9 3.1 24 73-96 44-67 (311)
452 cd06601 GH31_lyase_GLase GLase 27.6 77 0.0017 24.1 3.1 26 70-95 60-85 (332)
453 TIGR03123 one_C_unchar_1 proba 27.6 39 0.00084 25.6 1.5 27 85-111 275-301 (318)
454 PF01488 Shikimate_DH: Shikima 27.6 1.6E+02 0.0034 18.9 4.2 33 76-108 24-56 (135)
455 KOG0208 Cation transport ATPas 27.5 1.2E+02 0.0025 27.1 4.3 68 69-136 703-773 (1140)
456 PRK03600 nrdI ribonucleotide r 27.5 1.1E+02 0.0023 20.0 3.4 35 71-105 57-91 (134)
457 COG4312 Uncharacterized protei 27.4 1.4E+02 0.003 21.6 4.0 45 72-118 97-141 (247)
458 PF13477 Glyco_trans_4_2: Glyc 27.3 95 0.0021 19.4 3.2 24 76-99 13-36 (139)
459 cd06538 CIDE_N_FSP27 CIDE_N do 27.2 40 0.00087 19.9 1.2 14 5-18 41-54 (79)
460 PRK11302 DNA-binding transcrip 27.0 99 0.0021 22.5 3.6 25 71-95 186-210 (284)
461 COG1416 Uncharacterized conser 26.9 46 0.001 21.1 1.5 35 79-119 57-91 (112)
462 PF08534 Redoxin: Redoxin; In 26.8 1.8E+02 0.0038 18.5 4.6 24 84-107 59-82 (146)
463 PRK01906 tetraacyldisaccharide 26.7 87 0.0019 24.0 3.2 25 73-97 72-96 (338)
464 TIGR01101 V_ATP_synt_F vacuola 26.7 88 0.0019 19.9 2.8 43 74-118 46-89 (115)
465 cd08573 GDPD_GDE1 Glycerophosp 26.6 1.7E+02 0.0038 21.2 4.7 35 77-111 218-252 (258)
466 PF00390 malic: Malic enzyme, 26.5 30 0.00066 23.9 0.7 26 74-99 53-78 (182)
467 cd08564 GDPD_GsGDE_like Glycer 26.5 1.7E+02 0.0036 21.2 4.6 40 76-120 212-255 (265)
468 cd00544 CobU Adenosylcobinamid 26.1 90 0.0019 21.1 2.9 37 75-111 104-147 (169)
469 PF03033 Glyco_transf_28: Glyc 26.0 98 0.0021 19.5 3.1 32 77-111 16-47 (139)
470 PF02283 CobU: Cobinamide kina 25.6 85 0.0018 21.3 2.7 25 72-96 99-123 (167)
471 PF01927 Mut7-C: Mut7-C RNAse 25.5 1.7E+02 0.0037 19.2 4.2 42 78-119 51-92 (147)
472 cd03412 CbiK_N Anaerobic cobal 25.2 1E+02 0.0022 19.7 3.0 23 71-93 53-75 (127)
473 PF00710 Asparaginase: Asparag 25.2 1E+02 0.0022 23.2 3.4 29 70-98 236-264 (313)
474 PRK04531 acetylglutamate kinas 25.2 2.1E+02 0.0045 22.5 5.1 39 74-113 53-91 (398)
475 COG1126 GlnQ ABC-type polar am 25.1 89 0.0019 22.6 2.8 35 72-107 171-205 (240)
476 PF13380 CoA_binding_2: CoA bi 25.1 1.8E+02 0.004 18.2 4.2 40 72-111 64-104 (116)
477 PHA01735 hypothetical protein 24.8 94 0.002 17.8 2.3 33 73-105 32-64 (76)
478 PRK12314 gamma-glutamyl kinase 24.8 96 0.0021 22.7 3.1 21 76-96 36-56 (266)
479 PF11387 DUF2795: Protein of u 24.7 1.1E+02 0.0024 15.6 3.3 32 57-88 7-38 (44)
480 cd01452 VWA_26S_proteasome_sub 24.7 1E+02 0.0023 21.3 3.1 30 75-104 124-153 (187)
481 cd00032 CASc Caspase, interleu 24.6 1.7E+02 0.0037 21.0 4.3 35 75-109 33-67 (243)
482 smart00115 CASc Caspase, inter 24.5 1.8E+02 0.0038 20.9 4.4 35 75-109 31-65 (241)
483 PRK14129 heat shock protein Hs 24.4 47 0.001 20.7 1.2 16 3-18 19-34 (105)
484 COG0548 ArgB Acetylglutamate k 24.4 2E+02 0.0043 21.3 4.6 44 72-116 19-62 (265)
485 cd08579 GDPD_memb_like Glycero 24.3 2.1E+02 0.0045 20.0 4.7 34 77-111 180-213 (220)
486 cd06167 LabA_like LabA_like pr 24.2 94 0.002 20.0 2.8 24 73-96 109-132 (149)
487 PF06117 DUF957: Enterobacteri 24.2 59 0.0013 18.3 1.4 17 4-20 25-41 (65)
488 TIGR00746 arcC carbamate kinas 24.1 1E+02 0.0022 23.3 3.2 24 76-99 31-54 (310)
489 cd04261 AAK_AKii-LysC-BS AAK_A 24.0 1.6E+02 0.0034 21.0 4.1 31 74-104 18-48 (239)
490 PTZ00295 glucosamine-fructose- 24.0 1.2E+02 0.0027 25.3 3.9 33 73-105 382-414 (640)
491 COG0794 GutQ Predicted sugar p 24.0 1.5E+02 0.0033 20.9 3.8 30 74-103 100-129 (202)
492 COG0378 HypB Ni2+-binding GTPa 24.0 98 0.0021 21.9 2.8 20 77-97 31-50 (202)
493 PRK14558 pyrH uridylate kinase 23.9 1.1E+02 0.0024 21.7 3.2 19 78-96 30-48 (231)
494 PF14597 Lactamase_B_5: Metall 23.8 1.2E+02 0.0027 21.2 3.2 42 70-111 37-80 (199)
495 KOG2832 TFIIF-interacting CTD 23.5 1.1E+02 0.0024 23.8 3.2 46 70-116 213-258 (393)
496 PF08774 VRR_NUC: VRR-NUC doma 23.4 1.6E+02 0.0034 17.7 3.5 27 70-96 73-99 (100)
497 cd00419 Ferrochelatase_C Ferro 23.4 1.1E+02 0.0023 19.9 2.8 23 71-93 74-96 (135)
498 cd08575 GDPD_GDE4_like Glycero 23.3 2E+02 0.0043 20.9 4.5 39 77-120 221-259 (264)
499 cd00761 Glyco_tranf_GTA_type G 23.2 1.6E+02 0.0035 17.9 3.7 33 74-106 10-45 (156)
500 COG4123 Predicted O-methyltran 23.2 39 0.00084 24.7 0.8 33 113-145 115-147 (248)
No 1
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=173.05 Aligned_cols=149 Identities=58% Similarity=1.003 Sum_probs=140.7
Q ss_pred CceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCC---hHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHH
Q 044369 2 ADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMP---WNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIIS 78 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e 78 (157)
+..+++||||.||+|.++.+++.+.++....+.++...++ |.+++.+++++++..+...+++.+.++.+++.||+.+
T Consensus 12 ~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~ 91 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVR 91 (256)
T ss_pred CcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHH
Confidence 4678999999999999999999999999887777766655 9999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-cEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccCCCCCCCCCCCCCCCCCCCC
Q 044369 79 AVKAAHDLGC-DLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHDFTKSSHACSTNICPPNMCK 156 (157)
Q Consensus 79 ~l~~L~~~g~-~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~~~~ 156 (157)
+++.+++.|. .+.|+|.++..+++.+++++++.++|+.|++||..+++.|++.+.|++- ||+|+ .||+||||
T Consensus 92 lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~----~hsC~--~CPsNmCK 164 (256)
T KOG3120|consen 92 LIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHT----QHSCN--LCPSNMCK 164 (256)
T ss_pred HHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCC----CCccC--cCchhhhh
Confidence 9999999986 9999999999999999999999999999999999999999999999996 89998 89999998
No 2
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.95 E-value=3.3e-27 Score=166.41 Aligned_cols=145 Identities=50% Similarity=0.904 Sum_probs=131.6
Q ss_pred EEEEeCCCCcccCCchHHHHHhhchHHH---HHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHH
Q 044369 5 VVVFDFDKTIIDCDSDNWVVDELHATEL---FNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVK 81 (157)
Q Consensus 5 ~viFD~DgTL~d~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~ 81 (157)
.|+||||+||+|.++..++.+.++...+ +........|.+++..+++.+...+.+.+++.+.++.+++.||+.++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 6899999999999999999999987543 3344444569999999999999999999999999999999999999999
Q ss_pred HH--HHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccCCCCCCCCCCCCCCCCCCCC
Q 044369 82 AA--HDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHDFTKSSHACSTNICPPNMCK 156 (157)
Q Consensus 82 ~L--~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~~~~ 156 (157)
.+ ++.|+.+.|+|.++..+++.++++.|+.+.|+.|++||..+++.|++.+.|++. |+|. .||+||||
T Consensus 82 ~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~-----h~C~--~C~~NmCK 151 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS-----HGCS--LCPPNMCK 151 (234)
T ss_pred HHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccC-----CCCC--cCCCccch
Confidence 99 457999999999999999999999999999999999999888899999999994 8898 79999998
No 3
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.87 E-value=2.4e-20 Score=128.52 Aligned_cols=134 Identities=37% Similarity=0.608 Sum_probs=108.2
Q ss_pred eEEEEeCCCCcccCCchHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHH
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAV 80 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l 80 (157)
.+|+|||||||++.++...+.+.++.+. ..........+..+...+...+...+...+++.+.....+++||+.++|
T Consensus 2 ~~iiFD~dgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ll 81 (188)
T TIGR01489 2 VVVVSDFDGTITLNDSDDWITDKFGPPEANRLLDGVLSKTLSIKFMDRRMKGLLPSGLKEDEILEVLKSAPIDPGFKEFI 81 (188)
T ss_pred eEEEEeCCCcccCCCchHHHHHhcCcchhhHHHHHHhhcCCchHHHHHHHHHHhhcCCCHHHHHHHHHhCCCCccHHHHH
Confidence 4799999999999998888877776432 2233333223445444444445555677778888888899999999999
Q ss_pred HHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 81 KAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 81 ~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+.|+++|++++|+||+....++..++++++.++|+.|++++...+..|.+...|.+|
T Consensus 82 ~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~ 138 (188)
T TIGR01489 82 AFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHC 138 (188)
T ss_pred HHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCC
Confidence 999999999999999999999999999999999999999988667789999999886
No 4
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.82 E-value=5.6e-20 Score=130.05 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=95.0
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcC-CCHHHHHH-------
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQG-KTIEDIVE------- 65 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 65 (157)
++++|||||||||+|++ .+..+++++|+.. ......+...+.. ...+.+...... .......+
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARI-IDLLRKLAAGEDPADLAELERLLYEAEA 79 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHH-HHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 46899999999999995 4567777788652 3333433322332 333333322111 12212111
Q ss_pred -HHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee---------CCc-eeccCCcEEEee
Q 044369 66 -VLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT---------NSS-FVDEEGRLKIFP 134 (157)
Q Consensus 66 -~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~---------~~~-~~~~~~~~~~~p 134 (157)
......+.||+.++|..|+++|++++++|++++..++..++..|+.++|+.+++ +|+ |..++.++++.|
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 223588999999999999999999999999999999999999999999999886 556 666666666666
Q ss_pred ccCC
Q 044369 135 HHDF 138 (157)
Q Consensus 135 ~~~~ 138 (157)
.+|.
T Consensus 160 ~~Cv 163 (221)
T COG0637 160 EECV 163 (221)
T ss_pred HHeE
Confidence 6654
No 5
>PRK11587 putative phosphatase; Provisional
Probab=99.77 E-value=1.6e-18 Score=122.44 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=75.7
Q ss_pred CCceEEEEeCCCCcccCC-----chHHHHHhhchHHH-HHhhcCCCChHHHHHHHHHHHHHcCCCHHHH----HH-----
Q 044369 1 MADIVVVFDFDKTIIDCD-----SDNWVVDELHATEL-FNQLLPTMPWNSLMGRMMEELHAQGKTIEDI----VE----- 65 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----- 65 (157)
|++++|+|||||||+|+. +++.+++++|.+.. ........+.......+ .. +...+++ .+
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 75 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHF----MA-GASEAEIQAEFTRLEQIE 75 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHH----hc-cCCcHHHHHHHHHHHHHH
Confidence 889999999999999994 44677777887532 12222122222222221 11 1111111 11
Q ss_pred --HHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 66 --VLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 66 --~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
......++||+.++|+.|+++|++++|+||++.......++..++ .+|+.+++
T Consensus 76 ~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~ 130 (218)
T PRK11587 76 ATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVT 130 (218)
T ss_pred HhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEE
Confidence 112467899999999999999999999999999888888888888 45777774
No 6
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.77 E-value=1.1e-18 Score=125.62 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=84.6
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchH------H-HHHhhcCCCChHHHHHHHHHHHHHcCCC-HHHHHHHH-
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHAT------E-LFNQLLPTMPWNSLMGRMMEELHAQGKT-IEDIVEVL- 67 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 67 (157)
++++|+|||||||+|+. ++..+++++|.. . .+.......+.......+.......... ..+..+.+
T Consensus 21 ~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 100 (248)
T PLN02770 21 PLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDDKEALFR 100 (248)
T ss_pred ccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 46899999999999994 456677777532 1 1111111222333222221100000000 01111222
Q ss_pred ----hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 68 ----KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 ----~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
....++||+.++|+.|+++|++++|+||++...++..++++|+.++||.|++. +..+..||+|..+
T Consensus 101 ~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~----~~~~~~KP~p~~~ 170 (248)
T PLN02770 101 KLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIG----SECEHAKPHPDPY 170 (248)
T ss_pred HHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEec----CcCCCCCCChHHH
Confidence 24789999999999999999999999999999999999999999999999853 3334446666544
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.77 E-value=8.2e-19 Score=123.52 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCceEEEEeCCCCcccCC-----chHHHHHhhchH----HHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHH----H-
Q 044369 1 MADIVVVFDFDKTIIDCD-----SDNWVVDELHAT----ELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVE----V- 66 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 66 (157)
|++++|+||+||||+|+. ++..++++++.. .......+. +..+.... +. +...+++.+ .
T Consensus 1 m~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~----~~--~~~~~~~~~~~~~~~ 73 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGP-SLHDTFSK----ID--ESKVEEMITTYREFN 73 (214)
T ss_pred CCccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCc-CHHHHHHh----cC--HHHHHHHHHHHHHHH
Confidence 789999999999999984 345556665542 112222221 11221111 10 011111111 1
Q ss_pred ----HhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 67 ----LKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 67 ----~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.....++||+.++|+.|+++|++++|+||+....+...++.+|+.++|+.+++
T Consensus 74 ~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~ 130 (214)
T PRK13288 74 HEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVIT 130 (214)
T ss_pred HHhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEe
Confidence 12467899999999999999999999999999999999999999999999996
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.77 E-value=1.6e-18 Score=125.34 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=83.7
Q ss_pred ceEEEEeCCCCcccCC------chHHHHHhhchHHH----HHhhcCCCChHHHHHHHHHHHHHcCCCH---HHHHH----
Q 044369 3 DIVVVFDFDKTIIDCD------SDNWVVDELHATEL----FNQLLPTMPWNSLMGRMMEELHAQGKTI---EDIVE---- 65 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~------~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---- 65 (157)
+|+|||||||||+|+. ++..+++++|++.. .....+ .+.......+.. ...+. +++.+
T Consensus 24 ~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G-~~~~~~~~~l~~----~~~~~~~~~~l~~~~~~ 98 (260)
T PLN03243 24 WLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEG-MKNEQAISEVLC----WSRDFLQMKRLAIRKED 98 (260)
T ss_pred ceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcC-CCHHHHHHHHhc----cCCCHHHHHHHHHHHHH
Confidence 6899999999999994 23556666776421 122232 233332222211 11111 11111
Q ss_pred HH-----hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 66 VL-----KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 66 ~~-----~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
.+ ....++||+.++|+.|+++|++++|+||++...++..++++|+.++|+.|++. +..+..||+|..+
T Consensus 99 ~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~----~d~~~~KP~Pe~~ 171 (260)
T PLN03243 99 LYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAA----EDVYRGKPDPEMF 171 (260)
T ss_pred HHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEec----ccCCCCCCCHHHH
Confidence 11 13678999999999999999999999999999999999999999999999963 2333346666544
No 9
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.77 E-value=2.3e-17 Score=116.61 Aligned_cols=117 Identities=24% Similarity=0.313 Sum_probs=87.8
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHH---HHh-hcCCCChHHHHHHHHHHHHHcCCCHHHHHHHH-hhCCCChh
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATEL---FNQ-LLPTMPWNSLMGRMMEELHAQGKTIEDIVEVL-KRAPIHPS 75 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pg 75 (157)
||.++|+|||||||++.+....+++.++...+ ... ..+.+++.+.....++.+. ....+++.+.+ ....++||
T Consensus 1 ~~~~~vifDfDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~pG 78 (219)
T PRK09552 1 MMSIQIFCDFDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLP--SNLKEEIIQFLLETAEIREG 78 (219)
T ss_pred CCCcEEEEcCCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCC--CCchHHHHHHHHhCCCcCcC
Confidence 78889999999999999876666666665432 111 2244567777766666643 22346666654 46899999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
+.++|+.|+++|++++|+||+...+++.+++++ +.. +.++++..
T Consensus 79 ~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~--~~i~~n~~ 122 (219)
T PRK09552 79 FHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK--EQIYCNGS 122 (219)
T ss_pred HHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc--CcEEEeEE
Confidence 999999999999999999999999999999998 653 45666544
No 10
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.76 E-value=5e-17 Score=113.09 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=90.5
Q ss_pred CceEEEEeCCCCcccCCc-hHHHHHhhchHHHH-----HhhcCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHhhCCCC
Q 044369 2 ADIVVVFDFDKTIIDCDS-DNWVVDELHATELF-----NQLLPTMPWNSLMGRMMEELHAQ--GKTIEDIVEVLKRAPIH 73 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~-~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (157)
|+|+|+|||||||+|.++ +.++...++..... ....+.+++.++.......+... ....+++.+.+....++
T Consensus 3 ~~k~viFD~DGTLid~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSSWEYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRSGRLRREEVEEIFKEISLR 82 (201)
T ss_pred cceEEEEeCCCCCcCCccHHHHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcccCCCHHHHHHHHHhCCCC
Confidence 478999999999999654 55555556654211 12334455566544333322221 23456677777889999
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEee
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFP 134 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p 134 (157)
||+.++|+.|+++|++++|+||+....++.+++++|+..+|+..+ ..+..+..+|.|
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~----~~~~~g~~~p~~ 139 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNEL----VFDEKGFIQPDG 139 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEE----EEcCCCeEecce
Confidence 999999999999999999999999999999999999887776655 333345444443
No 11
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.76 E-value=9.1e-19 Score=131.40 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=83.8
Q ss_pred CceEEEEeCCCCcccCCc------hHHHHHhhchHHH----HHhhcCCCChHHHHHHHHHHHHHcCCCHHHH----HHHH
Q 044369 2 ADIVVVFDFDKTIIDCDS------DNWVVDELHATEL----FNQLLPTMPWNSLMGRMMEELHAQGKTIEDI----VEVL 67 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~------~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 67 (157)
..++|||||||||+|+.. +..+++++|.+.. ...+.+ .+..+....+.... ......+++ .+.+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G-~~~~~~l~~ll~~~-~~~~~~e~l~~~~~~~y 207 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEG-MKNEQAISEVLCWS-RDPAELRRMATRKEEIY 207 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC-CCHHHHHHHHhhcc-CCHHHHHHHHHHHHHHH
Confidence 378999999999999853 2345556665421 222332 23333333322110 000011122 1222
Q ss_pred h-----hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 68 K-----RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 ~-----~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
. ...++||+.++|+.|+++|++++|+||++...++..++++|+.++||.|++..+ .+..||+|..+
T Consensus 208 ~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sdd----v~~~KP~Peif 278 (381)
T PLN02575 208 QALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAED----VYRGKPDPEMF 278 (381)
T ss_pred HHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCc----CCCCCCCHHHH
Confidence 1 367899999999999999999999999999999999999999999999996333 23335555443
No 12
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.75 E-value=4.8e-18 Score=120.47 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=55.5
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
....++||+.++|+.|+++|++++|+||++...++..++++|+.++||.+++ .+..+..||+|..+
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~----s~~~~~~KP~p~~~ 155 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLS----THTFGYPKEDQRLW 155 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEE----eeeCCCCCCCHHHH
Confidence 4588999999999999999999999999999999999999999999999985 23334446655443
No 13
>PRK09449 dUMP phosphatase; Provisional
Probab=99.75 E-value=3e-17 Score=116.23 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCceEEEEeCCCCcccCCc---hHHHHHhhchHH---HHHhh--c----------CCCChHHHHHHHHH-HHHHcCCCHH
Q 044369 1 MADIVVVFDFDKTIIDCDS---DNWVVDELHATE---LFNQL--L----------PTMPWNSLMGRMME-ELHAQGKTIE 61 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~---~~~~~~~~g~~~---~~~~~--~----------~~~~~~~~~~~~~~-~~~~~~~~~~ 61 (157)
|++|+|+||+||||+|... +..+++++|.+. ....+ . +.....++.....+ .....+.+.+
T Consensus 1 m~~k~iiFDlDGTLid~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T PRK09449 1 MKYDWILFDADETLFHFDAFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVTPG 80 (224)
T ss_pred CCccEEEEcCCCchhcchhhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 7899999999999998643 234455555431 11111 0 01111111111111 1112233333
Q ss_pred HHHHH----H-hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeecc
Q 044369 62 DIVEV----L-KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 62 ~~~~~----~-~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~ 136 (157)
++.+. + ....++||+.++|+.|+ +|++++|+||++...+...++++|+.++||.++ ..+..+..||+|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~----~~~~~~~~KP~p~~ 155 (224)
T PRK09449 81 ELNSAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLV----ISEQVGVAKPDVAI 155 (224)
T ss_pred HHHHHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEE----EECccCCCCCCHHH
Confidence 33332 2 23679999999999999 579999999999999999999999999999998 44555556777655
Q ss_pred C
Q 044369 137 D 137 (157)
Q Consensus 137 ~ 137 (157)
+
T Consensus 156 ~ 156 (224)
T PRK09449 156 F 156 (224)
T ss_pred H
Confidence 4
No 14
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.75 E-value=5.5e-18 Score=119.73 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=83.7
Q ss_pred ceEEEEeCCCCcccCC-----chHHHHHhhchHHH---HHh-hcCCCChHHHHHHHHHHHHHcCCCH---HHHHH----H
Q 044369 3 DIVVVFDFDKTIIDCD-----SDNWVVDELHATEL---FNQ-LLPTMPWNSLMGRMMEELHAQGKTI---EDIVE----V 66 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~ 66 (157)
+++|+|||||||+|+. ++..+++++|.+.. ..+ +.+ .+..+....+... .+.+. +++.+ .
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 76 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMG-QSKIEAIRALLAL---DGADEAEAQAAFADFEER 76 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcC-CCHHHHHHHHHhc---cCCCHHHHHHHHHHHHHH
Confidence 4799999999999985 33555666666422 222 222 2233323322221 12221 21211 1
Q ss_pred Hh------hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc--cccchheeCCceeccCCcEEEeeccC
Q 044369 67 LK------RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW--ELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 67 ~~------~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~--~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+. ...++||+.++|+.|+++|++++|+||++...++..++++|+. ++|+.+++..+ .+..||.|..+
T Consensus 77 ~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~----~~~~KP~p~~~ 151 (220)
T TIGR03351 77 LAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSD----VAAGRPAPDLI 151 (220)
T ss_pred HHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCc----CCCCCCCHHHH
Confidence 11 2579999999999999999999999999999999999999999 99999986433 23345666543
No 15
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.74 E-value=3.8e-18 Score=120.69 Aligned_cols=131 Identities=22% Similarity=0.317 Sum_probs=84.7
Q ss_pred CCceEEEEeCCCCcccCC-----chHHHHHhhchHH-H---HHhhcCCCChHHHHHHHHHHHHH-cC-CCHH----HHHH
Q 044369 1 MADIVVVFDFDKTIIDCD-----SDNWVVDELHATE-L---FNQLLPTMPWNSLMGRMMEELHA-QG-KTIE----DIVE 65 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~-~---~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~----~~~~ 65 (157)
|++++|+||+||||+|+. +++..++++|.+. . .....+. +.............. .. ...+ .+.+
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGL-GLDELIERLLGEADEEAAAELVERLREEFLT 80 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcC-CHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 568999999999999994 4467777777762 1 2222222 122211111110000 00 0011 1111
Q ss_pred HHhh---CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeecc
Q 044369 66 VLKR---APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 66 ~~~~---~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~ 136 (157)
.+.. ..++||+.++|..|+++|++++|+||.+...++.+++++|+.++|+.+++. +....-||+|..
T Consensus 81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~----~~~~~~KP~P~~ 150 (220)
T COG0546 81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGG----DDVPPPKPDPEP 150 (220)
T ss_pred HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcC----CCCCCCCcCHHH
Confidence 2222 479999999999999999999999999999999999999999999999972 222333556554
No 16
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.74 E-value=2.1e-17 Score=114.97 Aligned_cols=72 Identities=24% Similarity=0.415 Sum_probs=60.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 62 DIVEVLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 62 ~~~~~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
.+.+.+....++||+.++|+.|+++|++++|+||++...++..++++|+.++||.|++ .+..+..||+|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~----s~~~~~~KP~~~~~ 154 (198)
T TIGR01428 83 RLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLS----ADAVRAYKPAPQVY 154 (198)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEe----hhhcCCCCCCHHHH
Confidence 3444556788999999999999999999999999999999999999999999999995 34445556776654
No 17
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.74 E-value=1.5e-17 Score=120.78 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=53.3
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc-chheeCCceeccCCcEEEeeccC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF-SEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f-d~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
...++||+.++|+.|+++|++++|+||++...+...++.+++.++| |.|++. +..+..||+|..+
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~----~~~~~~KP~p~~~ 164 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTT----DDVPAGRPYPWMA 164 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcC----CcCCCCCCChHHH
Confidence 3678999999999999999999999999999999999999988875 778753 2333446666554
No 18
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.74 E-value=1e-16 Score=113.18 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=87.4
Q ss_pred CceEEEEeCCCCcccCCchHHHHHhhchHHHH----Hh-hcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhH
Q 044369 2 ADIVVVFDFDKTIIDCDSDNWVVDELHATELF----NQ-LLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSI 76 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~ 76 (157)
++++++|||||||++++++..+++.+|.+... .. ..+...+.+........+ .+...+.+.+......++||+
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~ 90 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALL--KGLPVELLKEVRENLPLTEGA 90 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh--CCCCHHHHHHHHhcCCcCCCH
Confidence 47899999999999999888888888875322 22 223344555444333333 245566667777788899999
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
.++|+.|+++|++++|+||+....++.+++++|+..+|+.
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~ 130 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFAN 130 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEee
Confidence 9999999999999999999999999999999999887754
No 19
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.74 E-value=4.2e-17 Score=115.46 Aligned_cols=117 Identities=16% Similarity=0.302 Sum_probs=78.3
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHHH----HHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHH----H--
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATEL----FNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVE----V-- 66 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 66 (157)
++++|+||+||||+|+. ++..+++++|.+.. .....+. ........+.......+...+++.+ .
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGL-RIDQVVDLWYARQPWNGPSRQEVVQRIIARVI 84 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999994 33455666665421 2222221 1222222222221111222222211 1
Q ss_pred ---HhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 67 ---LKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 67 ---~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.....++||+.++|+.|+++|++++|+||+....++..++++++..+|+.+++
T Consensus 85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~ 140 (222)
T PRK10826 85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALAS 140 (222)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEE
Confidence 12478999999999999999999999999999999999999999999999885
No 20
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.73 E-value=6e-18 Score=120.37 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=81.9
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHHH-HHhhcCCCChHHHHHHHHHHHHH-cCC-CHHH----HHHHH--
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATEL-FNQLLPTMPWNSLMGRMMEELHA-QGK-TIED----IVEVL-- 67 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~----~~~~~-- 67 (157)
++++|||||||||+|+. +++.+++++|.+.. ........ +.. .....+.... ... ..++ +.+.+
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVV-SKG-ARAMLAVAFPELDAAARDALIPEFLQRYEA 88 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHh-hhH-HHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 45899999999999994 45667777776421 11111111 111 1111111111 010 0112 22222
Q ss_pred ---hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 68 ---KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 ---~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
....++||+.++|+.|+++|++++|+||++...+...++++++..+|+.+++.. ..+..||.|..+
T Consensus 89 ~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~----~~~~~KP~p~~~ 157 (229)
T PRK13226 89 LIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGD----TLAERKPHPLPL 157 (229)
T ss_pred hhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecC----cCCCCCCCHHHH
Confidence 236889999999999999999999999999999999999999999999887532 223345555443
No 21
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.72 E-value=3.7e-17 Score=117.86 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=53.3
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc-chheeCCceeccCCcEEEeeccC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF-SEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f-d~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
...++||+.++|+.|+++|++++|+||++...++.+++++|+..+| |.|++.. ..+.-||.|..+
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~----~~~~~KP~p~~~ 162 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTD----DVPAGRPAPWMA 162 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccc----cCCCCCCCHHHH
Confidence 4689999999999999999999999999999999999999999986 8888532 223335555443
No 22
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.72 E-value=2.8e-16 Score=109.85 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=93.4
Q ss_pred ceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHHH
Q 044369 3 DIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKA 82 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~ 82 (157)
+++|+|||||||++. .+..+.+++|.++......+...+..........+...+.+.+++........++||+.++|+.
T Consensus 1 ~~~v~FD~DGTL~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~pg~~e~L~~ 79 (205)
T PRK13582 1 MEIVCLDLEGVLVPE-IWIAFAEKTGIPELRATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVIATLDPLPGAVEFLDW 79 (205)
T ss_pred CeEEEEeCCCCChhh-HHHHHHHHcCChHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 368999999999964 6677778888876444334445677776666666665577888898888999999999999999
Q ss_pred HHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 83 AHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 83 L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
|+++ ++++|+||+....++..++++|+..+|+..+
T Consensus 80 L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~ 114 (205)
T PRK13582 80 LRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSL 114 (205)
T ss_pred HHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceE
Confidence 9999 9999999999999999999999988776544
No 23
>PLN02954 phosphoserine phosphatase
Probab=99.72 E-value=9.7e-17 Score=113.64 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=84.2
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHH----HHhhc-CCCChHHHHHHHHHHHHHcCCCHHHHHHHHhh--CCCC
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATEL----FNQLL-PTMPWNSLMGRMMEELHAQGKTIEDIVEVLKR--APIH 73 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 73 (157)
|+.|+|+|||||||++.++...+++.+|.+.. ..++. +.+++.+........ .....+++.+.+.. ..++
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 86 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSL---FKPSLSQVEEFLEKRPPRLS 86 (224)
T ss_pred ccCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHH---cCCCHHHHHHHHHHccCCCC
Confidence 56899999999999999999999999988532 22222 234444443332222 23455666665554 5689
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc--cccc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW--ELFS 115 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~--~~fd 115 (157)
||+.++|+.|+++|++++|+|++....++.+++.+|+. .+|+
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 99999999999999999999999999999999999997 3454
No 24
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.71 E-value=6.3e-17 Score=111.64 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=82.7
Q ss_pred ceEEEEeCCCCcccCC-----chHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHH--------
Q 044369 3 DIVVVFDFDKTIIDCD-----SDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEV-------- 66 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 66 (157)
+++|+||+||||+|+. ++..+++++|.+. ......+. ...+....+.... ....+.+++...
T Consensus 5 ~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (188)
T PRK10725 5 YAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGS-PTWRIAQAIIELN-QADLDPHALAREKTEAVKSM 82 (188)
T ss_pred ceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCC-CHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999984 4466666677642 12222222 2222233333222 122333333221
Q ss_pred -HhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 67 -LKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 67 -~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
.....++|| .++|..|++. ++++|+||++...++..++++|+.++||.|++. +..++.+|.|..+
T Consensus 83 ~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~----~~~~~~KP~p~~~ 148 (188)
T PRK10725 83 LLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAA----DDVQHHKPAPDTF 148 (188)
T ss_pred HhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEeh----hhccCCCCChHHH
Confidence 124567886 5899999875 999999999999999999999999999999953 3334446666443
No 25
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.70 E-value=2.7e-16 Score=108.16 Aligned_cols=125 Identities=21% Similarity=0.281 Sum_probs=80.7
Q ss_pred ceEEEEeCCCCcccCC-----chHHHHHhhchH---HHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHH-------HH
Q 044369 3 DIVVVFDFDKTIIDCD-----SDNWVVDELHAT---ELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVE-------VL 67 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-----~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 67 (157)
+++|+||+||||+|+. ++..+++++|.+ .+.....+ .........+.... ..+.+.+++.. .+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGG-LSREDILRAILKLR-KPGLSLETIHQLAERKNELY 78 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCC-CCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999995 335566666654 12222222 23333333333221 11233322211 11
Q ss_pred ------hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeec
Q 044369 68 ------KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPH 135 (157)
Q Consensus 68 ------~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~ 135 (157)
....++||+.++|+.|+++|++++++||+ ..++.+++++|+.++|+.+++. +..+..+|.|.
T Consensus 79 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~----~~~~~~kp~~~ 146 (185)
T TIGR02009 79 RELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDA----DEVKEGKPHPE 146 (185)
T ss_pred HHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeeh----hhCCCCCCChH
Confidence 13679999999999999999999999998 6688999999999999998853 22333455554
No 26
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.70 E-value=3.4e-16 Score=110.60 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=53.5
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeecc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~ 136 (157)
...++||+.++|+.|+++|++++|+||++...+...++++|+.++||.+++ .+..+..||+|..
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~----~~~~~~~KP~~~~ 155 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVIT----SEEEGVEKPHPKI 155 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEE----eccCCCCCCCHHH
Confidence 468999999999999999999999999999999999999999999999885 2333444555443
No 27
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.69 E-value=1.8e-16 Score=110.26 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
.+.+++.++|+.|+++|++++|+||++...++.+++++|+..+|+.+++ .+.... +|.|..+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~----~~~~~~-KP~p~~~ 167 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIW----MEDCPP-KPNPEPL 167 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEe----ecCCCC-CcCHHHH
Confidence 3445669999999999999999999999999999999999999999885 333334 6777643
No 28
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.68 E-value=2.1e-16 Score=110.32 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
..++||+.++|+.|+++|++++|+||++.. +...++++|+..+||.|++ ....+..||.|.-+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~----s~~~~~~KP~~~~~ 166 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVT----SYEVGAEKPDPKIF 166 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEe----ecccCCCCCCHHHH
Confidence 468999999999999999999999999875 5788999999999999984 33345556666443
No 29
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.68 E-value=2.4e-16 Score=110.68 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
..++||+.++|+.|+++|++++|+||++...++..++++|+..+|+.+++.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 134 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGG 134 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEec
Confidence 679999999999999999999999999999999999999999999998863
No 30
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.68 E-value=5.3e-17 Score=118.13 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=76.6
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHH----HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHH----H---
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATE----LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIV----E--- 65 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--- 65 (157)
++++++|||||||+|+. ++..+++++|.+. ...++.+. .... +.+.+.......+++. +
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~-~~~~----i~~~~~~~~~~~~~~~~~~~~~~~ 135 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQW-SSRT----IVRRAGLSPWQQARLLQRVQRQLG 135 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCc-cHHH----HHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999995 4456667777642 12222221 1111 1111110000111111 1
Q ss_pred -HHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 66 -VLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 66 -~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
......++||+.++|+.|+++|++++|+||++...+...++++|+.++|+.+++
T Consensus 136 ~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~ 190 (273)
T PRK13225 136 DCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQA 190 (273)
T ss_pred hhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEe
Confidence 223467899999999999999999999999999999999999999999998875
No 31
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.68 E-value=4.7e-16 Score=106.93 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=79.3
Q ss_pred EEEEeCCCCcccCC-----chHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHH-------HH--
Q 044369 5 VVVFDFDKTIIDCD-----SDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVE-------VL-- 67 (157)
Q Consensus 5 ~viFD~DgTL~d~~-----~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-- 67 (157)
+|+||+||||+|+. ++..+++.+|++. ....+.+ .+..+....+.... +.+.+.+++.+ .+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKG-VSREDSLERILDLG-GKKYSEEEKEELAERKNDYYVE 78 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcC-CChHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999995 4456666777642 1222222 23333333333322 11222222111 11
Q ss_pred --h---hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 68 --K---RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 --~---~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
. ...++||+.++|+.|+++|++++|+||+.. ....++++++..+||.+++. +..+..+|+|..+
T Consensus 79 ~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~----~~~~~~kp~p~~~ 147 (185)
T TIGR01990 79 LLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDP----AEIKKGKPDPEIF 147 (185)
T ss_pred HHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEeh----hhcCCCCCChHHH
Confidence 1 247899999999999999999999999754 46789999999999998842 3334446666543
No 32
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.68 E-value=1.2e-16 Score=111.74 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=54.0
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeecc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~ 136 (157)
...++||+.++|++|+++|++++|+||++...+...++++|+.++|+.+++.. ..+..+|.|..
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~----~~~~~KP~~~~ 136 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSD----EVPRPKPAPDI 136 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecC----cCCCCCCChHH
Confidence 57899999999999999999999999999999999999999999999988532 23334555543
No 33
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.67 E-value=4.4e-16 Score=113.42 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=82.8
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHH----HHHhhcCCCChHHHHHHHHH-HHHHcCCC---HHHHHH---
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATE----LFNQLLPTMPWNSLMGRMME-ELHAQGKT---IEDIVE--- 65 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~--- 65 (157)
++++|+|||||||+|+. ++..+++++|.+. ....+.+. +.......... .+...+.+ .+++.+
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGN-GAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCh-hHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 36899999999999993 4566777777642 12222221 22222222111 01011222 122222
Q ss_pred -HHh----hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeec
Q 044369 66 -VLK----RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPH 135 (157)
Q Consensus 66 -~~~----~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~ 135 (157)
.+. ...++||+.++|+.|+++|++++|+||++...++..++++++..+|+.+++.. ..+..+|.|.
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d----~~~~~Kp~p~ 161 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGD----TLPQKKPDPA 161 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecC----CCCCCCCCcH
Confidence 221 25689999999999999999999999999999999999999999999988532 2333455554
No 34
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.67 E-value=6.8e-16 Score=109.14 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=83.5
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHH----HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHH-----
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATE----LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVL----- 67 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 67 (157)
.+++|+||+||||+|+. ++..++.++|.+. ....+. ..+.......+.... +...+.+++.+.+
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFK-GVKLYEIIDIISKEH-GVTLAKAELEPVYRAEVA 80 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhc-CCCHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 48999999999999984 3355666667531 122222 223334344443332 2233444444322
Q ss_pred ----hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc-hheeCCceeccCCcEEEeeccC
Q 044369 68 ----KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS-EINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 68 ----~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd-~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
....++||+.++|+.| +++++|+||++...+...++++++.++|+ .+++. ...+..||.|..+
T Consensus 81 ~~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~----~~~~~~KP~p~~~ 148 (221)
T PRK10563 81 RLFDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSG----YDIQRWKPDPALM 148 (221)
T ss_pred HHHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeH----HhcCCCCCChHHH
Confidence 2378999999999999 49999999999999999999999999997 45532 2234446665544
No 35
>PLN02940 riboflavin kinase
Probab=99.67 E-value=2.4e-16 Score=119.60 Aligned_cols=129 Identities=18% Similarity=0.134 Sum_probs=85.9
Q ss_pred ceEEEEeCCCCcccCC-----chHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHH--------HH
Q 044369 3 DIVVVFDFDKTIIDCD-----SDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIV--------EV 66 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 66 (157)
+++|+||+||||+|+. ++..+++++|.+. ......+. +.......+..... .....+++. +.
T Consensus 11 ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 11 VSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGK-TPLEAAATVVEDYG-LPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred CCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCC-CHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHH
Confidence 6789999999999994 3455666676532 22223322 23333333333321 122233322 12
Q ss_pred HhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHH-HCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 67 LKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILK-HHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 67 ~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~-~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+....++||+.++|+.|+++|++++|+||++...+...++ +.++..+||.|++. +..+..||+|..+
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~----d~v~~~KP~p~~~ 156 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGG----DEVEKGKPSPDIF 156 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEeh----hhcCCCCCCHHHH
Confidence 3357899999999999999999999999999999998887 78999999999963 2233345555544
No 36
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.66 E-value=3.7e-16 Score=110.67 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCceEEEEeCCCCcccCC-----chHHHHHhhchHH----HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHH-------H
Q 044369 1 MADIVVVFDFDKTIIDCD-----SDNWVVDELHATE----LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDI-------V 64 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 64 (157)
|++++|+||+||||+|+. ++..+++.+|.+. ....+.+. +............ +.....+++ .
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGN-GADVLVERALTWA-GREPDEELLEKLRELFD 81 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCc-cHHHHHHHHHhhc-cCCccHHHHHHHHHHHH
Confidence 358999999999999984 3344555566531 22222222 2223222222211 112222222 2
Q ss_pred HHHh-----hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 65 EVLK-----RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 65 ~~~~-----~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
+.+. ...++||+.++|+.|+++|++++|+||+....++.+++++++..+|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 142 (226)
T PRK13222 82 RHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGG 142 (226)
T ss_pred HHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcC
Confidence 2222 3679999999999999999999999999999999999999999999988853
No 37
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.66 E-value=7.1e-16 Score=119.80 Aligned_cols=117 Identities=14% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCceEEEEeCCCCcccCC-----chHHHHHhhch---------HHHHHhhcCCCChHHHHHHHHHHHHHcCCC-HHHHHH
Q 044369 1 MADIVVVFDFDKTIIDCD-----SDNWVVDELHA---------TELFNQLLPTMPWNSLMGRMMEELHAQGKT-IEDIVE 65 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~-----~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 65 (157)
||+++|||||||||+|+. ++++++++++. ...+....+. +..+....+.... +.. .+++..
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~l~~~~---~~~~~~~~~~ 314 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGV-PLPKVWEALLPDH---SLEIREQTDA 314 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCC-ChHHHHHHHhhhc---chhHHHHHHH
Confidence 356899999999999995 33555555531 1122223222 2333333322211 111 111111
Q ss_pred ----H----H--hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCC
Q 044369 66 ----V----L--KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNS 121 (157)
Q Consensus 66 ----~----~--~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~ 121 (157)
. + ....++||+.++|++|+++|++++|+||++...+...++++++..+|+.+++..
T Consensus 315 ~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d 380 (459)
T PRK06698 315 YFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIE 380 (459)
T ss_pred HHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecC
Confidence 1 1 136789999999999999999999999999999999999999999999998643
No 38
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.65 E-value=1.6e-15 Score=107.21 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeecc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~ 136 (157)
..++||+.++|++|+++ ++++|+||++...++..++.+++..+||.+++ .+..+..||.|..
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~----~~~~~~~KP~~~~ 157 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFV----SEDAGIQKPDKEI 157 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEE----cCccCCCCCCHHH
Confidence 67999999999999999 99999999999999999999999999999995 3334445666543
No 39
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.64 E-value=4.5e-15 Score=103.45 Aligned_cols=129 Identities=12% Similarity=0.187 Sum_probs=82.5
Q ss_pred eEEEEeCCCCcccCCchHH--HHHh-hch--H----------HHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 044369 4 IVVVFDFDKTIIDCDSDNW--VVDE-LHA--T----------ELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLK 68 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~--~~~~-~g~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (157)
.+|+||+||||++.+.... .+.. .+. . .+.....+.++..++...+.+.+. ...+.+++...+.
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMA-LSLSYEQFAHGWQ 79 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 3799999999999853211 1111 111 1 111222233344444444444332 2334455555443
Q ss_pred h--CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC-CcccccchheeCCceeccCCcEEEeeccC
Q 044369 69 R--APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH-GIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~--~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~-~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
. ..++||+.++|+.|+++|++++|+||++.......+... ++..+||.++ .....+..||+|.-+
T Consensus 80 ~~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~----~s~~~~~~KP~p~~~ 147 (199)
T PRK09456 80 AVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIY----LSQDLGMRKPEARIY 147 (199)
T ss_pred HHHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEE----EecccCCCCCCHHHH
Confidence 2 568999999999999999999999999988777766554 7889999998 444555567777655
No 40
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.63 E-value=1.2e-14 Score=102.36 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=83.4
Q ss_pred EEEeCCCCcccCCchHHHHHhhchHHHH---Hhh-cCCCChHHHHHHHHHHHHHcCCC-HHHHHHHH-hhCCCChhHHHH
Q 044369 6 VVFDFDKTIIDCDSDNWVVDELHATELF---NQL-LPTMPWNSLMGRMMEELHAQGKT-IEDIVEVL-KRAPIHPSIISA 79 (157)
Q Consensus 6 viFD~DgTL~d~~~~~~~~~~~g~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~pg~~e~ 79 (157)
|+|||||||++.++...+++.++.+.+. ..+ .+.+++.+.+...+..+ +.+ .+++.+.. ....++||+.++
T Consensus 2 ~~fDFDgTit~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~l~pg~~e~ 78 (214)
T TIGR03333 2 IICDFDGTITNNDNIISIMKQFAPPEWEALKDGVLSKTLSIQEGVGRMFGLL---PSSLKEEITSFVLETAEIREGFREF 78 (214)
T ss_pred EEeccCCCCCcchhHHHHHHHhCcHHHHHHHHHHHcCCccHHHHHHHHHhhC---CCchHHHHHHHHHhcCcccccHHHH
Confidence 7999999999999888888777654432 222 34456777665555444 222 35666643 468999999999
Q ss_pred HHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCce
Q 044369 80 VKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSF 123 (157)
Q Consensus 80 l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~ 123 (157)
|+.|+++|++++|+|++...+++.++++++.. +.|++++..
T Consensus 79 l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~---~~i~~n~~~ 119 (214)
T TIGR03333 79 VAFINEHGIPFYVISGGMDFFVYPLLEGIVEK---DRIYCNEAD 119 (214)
T ss_pred HHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc---ccEEeceeE
Confidence 99999999999999999999999999987442 467776663
No 41
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.63 E-value=1.2e-14 Score=101.53 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=85.1
Q ss_pred eEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHHHH
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAA 83 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L 83 (157)
..++|||||||++. .|..++.+.|.............+.++.......+...+.+.+++.+......++||+.++|+.|
T Consensus 2 ~la~FDlD~TLi~~-~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~~i~l~pga~ell~~l 80 (203)
T TIGR02137 2 EIACLDLEGVLVPE-IWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWL 80 (203)
T ss_pred eEEEEeCCcccHHH-HHHHHHHHcCCcHHHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHhCCCCccHHHHHHHH
Confidence 46999999999986 57788888886543322333334555544433444334888999988888899999999999999
Q ss_pred HHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 84 HDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 84 ~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
+++ .+++|+|++...+++++++++|+..+|.
T Consensus 81 k~~-~~~~IVS~~~~~~~~~il~~lgi~~~~a 111 (203)
T TIGR02137 81 RER-FQVVILSDTFYEFSQPLMRQLGFPTLLC 111 (203)
T ss_pred HhC-CeEEEEeCChHHHHHHHHHHcCCchhhc
Confidence 997 4999999999999999999999975554
No 42
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.62 E-value=3.9e-15 Score=104.57 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=49.0
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHH--HHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFF--IETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~--~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
...++||+.++|+.|+++|++++|+||++... ....+...++.++||.|++ ....+..||+|..+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~----s~~~~~~KP~p~~~ 158 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVE----SCLEGLRKPDPRIY 158 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEE----eeecCCCCCCHHHH
Confidence 46789999999999999999999999987653 3334455688899999883 33444456666554
No 43
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.62 E-value=6.6e-16 Score=104.63 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=83.3
Q ss_pred EEEeCCCCcccCCc-----hHH-HHHhhchHHHHHhhc--CCCChHHHHHHHHHHHHHcCCC-HHHHHHH--HhhCCCCh
Q 044369 6 VVFDFDKTIIDCDS-----DNW-VVDELHATELFNQLL--PTMPWNSLMGRMMEELHAQGKT-IEDIVEV--LKRAPIHP 74 (157)
Q Consensus 6 viFD~DgTL~d~~~-----~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~p 74 (157)
|+||+||||+|+.. +.. +.+.++.+....... ...+..+....+.......... .+.+.+. .....++|
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGIDPEEIQELFREYNLESKLQPYP 80 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGEEEST
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchhHHHHHHHhhhhhhhhccchhh
Confidence 79999999999854 222 345556552222221 1222333344444333221111 1222222 25688999
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
|+.++|+.|+++|++++++||++...++..++++|+..+|+.+++ .+..+..+|.|.-+
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~----~~~~~~~Kp~~~~~ 139 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIIS----SDDVGSRKPDPDAY 139 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEE----GGGSSSSTTSHHHH
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccccccccccccccccc----cchhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999984 33344445555443
No 44
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.2e-14 Score=100.73 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred CceEEEEeCCCCcccCCchHHHHHhhchHHHHHhh-----cCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhh-CCCChh
Q 044369 2 ADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQL-----LPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKR-APIHPS 75 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pg 75 (157)
+.++++|||||||++.+.+..+....|........ .....+..........+ .+.+.+.+.+...+ ..++||
T Consensus 4 ~~~L~vFD~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l--~g~~~~~v~~~~~~~~~l~~g 81 (212)
T COG0560 4 MKKLAVFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALL--KGLPVEVLEEVREEFLRLTPG 81 (212)
T ss_pred ccceEEEecccchhhHHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHh--CCCCHHHHHHHHHhcCcCCcc
Confidence 56899999999999977777777778876533222 22222333333333333 37778888888888 999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
+.++++.|+++|++++|+|++....++++.+.+|++..+...+
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l 124 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANEL 124 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEE
Confidence 9999999999999999999999999999999999875444333
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=4.2e-15 Score=124.74 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=84.4
Q ss_pred CceEEEEeCCCCcccCC-----chHHHHHhhchHH---HHHhhcCCCChHHHHHHHHHHHHHcCCCHHH----HHHHHh-
Q 044369 2 ADIVVVFDFDKTIIDCD-----SDNWVVDELHATE---LFNQLLPTMPWNSLMGRMMEELHAQGKTIED----IVEVLK- 68 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~- 68 (157)
.+++|+|||||||+|+. ++..+++++|++. ......+. +.......+.......+.+.++ +.+.+.
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGT-GEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE 152 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999985 4466667777642 12222221 2233222222211111222222 222111
Q ss_pred ------hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc-cccchheeCCceeccCCcEEEeeccC
Q 044369 69 ------RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW-ELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ------~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~-~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
...++||+.++|++|+++|++++|+||+....++..++++++. .+||.+++ .+..++.||.|+.+
T Consensus 153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~----~~~~~~~KP~Pe~~ 224 (1057)
T PLN02919 153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVS----ADAFENLKPAPDIF 224 (1057)
T ss_pred HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEE----CcccccCCCCHHHH
Confidence 1247999999999999999999999999999999999999996 78999985 33334445655544
No 46
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.59 E-value=7.9e-15 Score=100.95 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHh------hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcE
Q 044369 57 GKTIEDIVEVLK------RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRL 130 (157)
Q Consensus 57 ~~~~~~~~~~~~------~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~ 130 (157)
+...+++...+. ...++||+.++|+.|+ ++++|+||++...+...++++|+..+||.|++..+........
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~ 140 (184)
T TIGR01993 64 EIDADEYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLP 140 (184)
T ss_pred CCCHHHHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCC
Confidence 344455444443 3668999999999997 5799999999999999999999999999999643311111113
Q ss_pred EEeeccC
Q 044369 131 KIFPHHD 137 (157)
Q Consensus 131 ~~~p~~~ 137 (157)
||+|..+
T Consensus 141 KP~p~~~ 147 (184)
T TIGR01993 141 KPSPQAY 147 (184)
T ss_pred CCCHHHH
Confidence 6666544
No 47
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=101.96 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
.+++|++.+.|+.++.+ ++++|+||+....+...++.+|+.++||.|+ ..+..|..||+|..+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~----~s~~~g~~KP~~~~f 160 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVF----ISEDVGVAKPDPEIF 160 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEE----EecccccCCCCcHHH
Confidence 89999999999999999 9999999999999999999999999999999 777778888888776
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.57 E-value=1.2e-14 Score=97.18 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=75.9
Q ss_pred EEEEeCCCCcccCC-----chHHHHHhhchHHH-HHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHH
Q 044369 5 VVVFDFDKTIIDCD-----SDNWVVDELHATEL-FNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIIS 78 (157)
Q Consensus 5 ~viFD~DgTL~d~~-----~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e 78 (157)
+|+||+||||+|+. ++++++++++.... +....+ .....+ ..... ..+++..+......+||+.+
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~g~~e 71 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRG-LAEELL-YRIAT-------SFEELLGYDAEEAYIRGAAD 71 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHc-cChHHH-HHHHH-------HHHHHhCcchhheeccCHHH
Confidence 48999999999984 34555555554211 111111 111111 11111 12222222234567799999
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+|+.|+++|++++|+||++...+...++++ +..+|+.+++..+ .+ .||.|..+
T Consensus 72 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~----~~-~Kp~~~~~ 124 (154)
T TIGR01549 72 LLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDE----FG-AKPEPEIF 124 (154)
T ss_pred HHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCC----CC-CCcCHHHH
Confidence 999999999999999999999999999998 8889998885332 33 46666544
No 49
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.56 E-value=9.3e-15 Score=100.14 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=51.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
..++||+.++|+.|+++|++++|+||++... .....++|+.++||.+++ .+..+.-||+|..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~----~~~~~~~KP~~~~~ 146 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIF----SGDVGRGKPDPDIY 146 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEE----cCCCCCCCCCHHHH
Confidence 5889999999999999999999999999988 777777999999999884 33344445555443
No 50
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.55 E-value=4.8e-14 Score=100.88 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
...++||+.++|+.|++. ++++|+||++.. +++.|+.++||.|++ .+..+..||.|..+
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~----~~~~~~~KP~p~~~ 169 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLR----AGPHGRSKPFSDMY 169 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEe----cccCCcCCCcHHHH
Confidence 478999999999999975 999999998876 478999999999985 33334456666554
No 51
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.54 E-value=2.6e-14 Score=97.56 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 63 IVEVLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 63 ~~~~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+.+.+....++||+.++|+ +++|+||++...+...++++|+..+||.|++ .+..+..||.|..+
T Consensus 82 ~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~----~~~~~~~KP~p~~f 145 (175)
T TIGR01493 82 LRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFS----VDTVRAYKPDPVVY 145 (175)
T ss_pred HHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhcc----HhhcCCCCCCHHHH
Confidence 3344567889999999998 3899999999999999999999999999884 33445567777654
No 52
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.53 E-value=1.4e-13 Score=93.97 Aligned_cols=109 Identities=24% Similarity=0.380 Sum_probs=74.2
Q ss_pred EEEEeCCCCcccCCchHHHHHh-hch-HH---HHHhhc-CCCChHHHHHHHHHHHHHcCCCHHHHHH-H-HhhCCCChhH
Q 044369 5 VVVFDFDKTIIDCDSDNWVVDE-LHA-TE---LFNQLL-PTMPWNSLMGRMMEELHAQGKTIEDIVE-V-LKRAPIHPSI 76 (157)
Q Consensus 5 ~viFD~DgTL~d~~~~~~~~~~-~g~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~pg~ 76 (157)
+++|||||||++.++...++.. .+. +. ....+. +.+.+.+........+ .+...+++.+ . .....++||+
T Consensus 1 l~~fD~DgTl~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~ 78 (177)
T TIGR01488 1 LAIFDFDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALL--HRSRSEEVAKEFLARQVALRPGA 78 (177)
T ss_pred CEEecCccccccchhhHHHHHHHhCChHHHHHHHHHHHCCCCCHHHHHHHHHHHh--CCCCHHHHHHHHHHhcCCcCcCH
Confidence 3799999999999885544443 443 21 122222 2333444333333332 2333356555 4 3467789999
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
.++++.++++|++++|+|++...+++.+++++|+..+|.
T Consensus 79 ~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~ 117 (177)
T TIGR01488 79 RELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFA 117 (177)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchhee
Confidence 999999999999999999999999999999999874443
No 53
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.52 E-value=3e-13 Score=100.40 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=81.5
Q ss_pred ceEEEEeCCCCcccCCchHHHHHhhchHHHHH-----hhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHH
Q 044369 3 DIVVVFDFDKTIIDCDSDNWVVDELHATELFN-----QLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSII 77 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 77 (157)
.++++|||||||+..+++.++++..|...... ...+.+.+.+........+ .+...+.+.+.....+++||+.
T Consensus 110 ~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l--~g~~~~il~~v~~~l~l~pGa~ 187 (322)
T PRK11133 110 PGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATL--KGADANILQQVRENLPLMPGLT 187 (322)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHh--CCCCHHHHHHHHHhCCCChhHH
Confidence 57999999999998888888888888753321 2233444555433322222 2444444455556789999999
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
++|+.|+++|++++|+|++...+++.+.+++++...+
T Consensus 188 elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~ 224 (322)
T PRK11133 188 ELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAV 224 (322)
T ss_pred HHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999986543
No 54
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=95.81 Aligned_cols=109 Identities=7% Similarity=0.122 Sum_probs=67.0
Q ss_pred CceEEEEeCCCCcccCC-chHHHHHhhchHH-HHHhhcCCCChHHHHHHHHHHHHHcCC-CHHHHHH------HHhhCCC
Q 044369 2 ADIVVVFDFDKTIIDCD-SDNWVVDELHATE-LFNQLLPTMPWNSLMGRMMEELHAQGK-TIEDIVE------VLKRAPI 72 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~-~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~ 72 (157)
|+|+|+||+||||+|+. ++..+++++|++. ......+...... . ...+. ... ..+++.+ ......+
T Consensus 1 m~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRD-P---GELFG-CDQELAKKLIEKYNNSDFIRYLSA 75 (197)
T ss_pred CCcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcC-H---HHHhc-ccHHHHHHHhhhhhHHHHHHhccC
Confidence 47899999999999973 4466777777752 2222211100000 0 01110 000 0111111 2234779
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
+||+.++|+.|++. ++++++||++........+.+++..+|+.
T Consensus 76 ~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~ 118 (197)
T PHA02597 76 YDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPG 118 (197)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCC
Confidence 99999999999987 67899999888777778888888876643
No 55
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=2.1e-13 Score=100.00 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
..++||+.++|+.|+++|++++|+||++...+..++++++...+|+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~ 188 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQ 188 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccC
Confidence 4799999999999999999999999999999999988875444444
No 56
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.49 E-value=5.9e-14 Score=98.48 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=83.7
Q ss_pred ceEEEEeCCCCcccCC-----chHHHHHhhchHH--HHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHH--------HH
Q 044369 3 DIVVVFDFDKTIIDCD-----SDNWVVDELHATE--LFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVE--------VL 67 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-----~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 67 (157)
..+++||+||||+|++ .++.++.++|... .......+..-.+....+... ...+.+.+++.. .+
T Consensus 10 ~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~-~~dp~s~ee~~~e~~~~~~~~~ 88 (222)
T KOG2914|consen 10 VSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKK-LPDPVSREEFNKEEEEILDRLF 88 (222)
T ss_pred eeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhc
Confidence 5789999999999996 3466777777532 222223333344544554422 223555555544 33
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC-cccccchhee
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG-IWELFSEINT 119 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~-l~~~fd~i~~ 119 (157)
....+.||+.+++..|+..|++++++|+++....+...++++ +.+.|+.++.
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~ 141 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVL 141 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCee
Confidence 358899999999999999999999999999999999999887 8888888775
No 57
>PRK11590 hypothetical protein; Provisional
Probab=99.46 E-value=2e-12 Score=90.94 Aligned_cols=117 Identities=10% Similarity=0.044 Sum_probs=71.4
Q ss_pred ceEEEEeCCCCcccCCch---HHHH-HhhchHHH----HHhhcCCCChHHHHH-------HHHHHHHHcCCCHHHHH---
Q 044369 3 DIVVVFDFDKTIIDCDSD---NWVV-DELHATEL----FNQLLPTMPWNSLMG-------RMMEELHAQGKTIEDIV--- 64 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~---~~~~-~~~g~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--- 64 (157)
.++++|||||||++.++. ...+ +++|+... .....+. +...... .+..... .+.+.+++.
T Consensus 6 ~k~~iFD~DGTL~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~-~l~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 83 (211)
T PRK11590 6 RRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNLLLVLPLLPVIGL-GLLVKGRAARWPMSLLLWGCT-FGHSEARLQALE 83 (211)
T ss_pred ceEEEEecCCCCcccchHHHHHHHHHHhcchhhHHHhHHHHHhcc-CcccchhhhhhhHHHHHHHHH-cCCCHHHHHHHH
Confidence 579999999999977644 3333 55664421 1112221 1111111 1111111 133443332
Q ss_pred HH----Hhh-CCCChhHHHHH-HHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 65 EV----LKR-APIHPSIISAV-KAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 65 ~~----~~~-~~~~pg~~e~l-~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
+. +.. ..++||+.+.| +.++++|++++|+||++...++.+++++|+.. .+.+++++.
T Consensus 84 ~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l 146 (211)
T PRK11590 84 ADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQM 146 (211)
T ss_pred HHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEE
Confidence 22 222 56799999999 57888999999999999999999999999643 456676543
No 58
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.45 E-value=2e-13 Score=97.15 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=67.0
Q ss_pred eEEEEeCCCCcccCCchHHHHHhhchHHH-HHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHHH
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDELHATEL-FNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKA 82 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~ 82 (157)
.+|+||+||||+|+.... .+|.+.. ..++.. .....+++.+.+.. -....+.+++.++|++
T Consensus 64 ~aViFDlDgTLlDSs~~~----~~G~~~~s~~~~~~-l~g~~~w~~~~~~~-------------~~~s~p~~~a~elL~~ 125 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGF----WRGKKTFSPGSEDY-LKNQVFWEKVNNGW-------------DEFSIPKEVARQLIDM 125 (237)
T ss_pred eEEEEeCCCccccCcHHH----hCCcccCCHHHhhh-hcChHHHHHHHHhc-------------ccCCcchhHHHHHHHH
Confidence 389999999999996543 2444321 111110 01122222221111 1235677789999999
Q ss_pred HHHcCCcEEEEeCC----ChHHHHHHHHHCCcccccchheeC
Q 044369 83 AHDLGCDLKIVSDA----NLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 83 L~~~g~~~~ivSn~----~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
|+++|++++++||. ....++.+++++|+..+|+.+++.
T Consensus 126 l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~ 167 (237)
T TIGR01672 126 HQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAG 167 (237)
T ss_pred HHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECC
Confidence 99999999999998 667899999999999999888863
No 59
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.44 E-value=2.2e-12 Score=87.29 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=93.4
Q ss_pred ceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhc-CCC-ChHHHHHHHHHHHHHcCCCHHHHHHHHh--hCCCChhHHH
Q 044369 3 DIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLL-PTM-PWNSLMGRMMEELHAQGKTIEDIVEVLK--RAPIHPSIIS 78 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pg~~e 78 (157)
.++|.||+|.|++..+....+....|......++. ..| +-..|.+.+.+++.-......++.+... .+.+.||+++
T Consensus 16 ~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~e 95 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIRE 95 (227)
T ss_pred cCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHHH
Confidence 47999999999999999988888888865433322 112 1223344444444444666777776554 5778999999
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcE
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRL 130 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~ 130 (157)
+++.|+++|.+++++|++-+..+.++...+||. +..++.|...++..|++
T Consensus 96 Lv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~--~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 96 LVSRLHARGTQVYLISGGFRQLIEPVAEQLGIP--KSNIYANELLFDKDGKY 145 (227)
T ss_pred HHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc--HhhhhhheeeeccCCcc
Confidence 999999999999999999999999999999998 33577766655555544
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2e-11 Score=82.04 Aligned_cols=127 Identities=25% Similarity=0.328 Sum_probs=95.8
Q ss_pred eEEEE-eCCCCcccCCchHHHHHhhchHHHHH---h-hcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHh-hCCCChhHH
Q 044369 4 IVVVF-DFDKTIIDCDSDNWVVDELHATELFN---Q-LLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLK-RAPIHPSII 77 (157)
Q Consensus 4 k~viF-D~DgTL~d~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pg~~ 77 (157)
++++| ||||||.-.++...+...+|..+|.. . +.+..+..+...+++. ..+.+.+++.+... .+.+.||.+
T Consensus 3 k~vi~sDFDGTITl~Ds~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~---~i~~s~~Eile~llk~i~Idp~fK 79 (220)
T COG4359 3 KPVIFSDFDGTITLNDSNDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFG---SIHSSLEEILEFLLKDIKIDPGFK 79 (220)
T ss_pred ceEEEecCCCceEecchhHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHH---hcCCCHHHHHHHHHhhcccCccHH
Confidence 45555 99999999988888889899887642 2 2233455555555544 44677777777554 599999999
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc--hheeCCceeccCCcEEEe
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS--EINTNSSFVDEEGRLKIF 133 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd--~i~~~~~~~~~~~~~~~~ 133 (157)
++++++++++++++|+|++...++..+++..+=.+..+ .|+++..+.+..+..++.
T Consensus 80 ef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~ 137 (220)
T COG4359 80 EFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIK 137 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeee
Confidence 99999999999999999999999999999986332222 466677777777877764
No 61
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.40 E-value=1.1e-11 Score=86.32 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=71.9
Q ss_pred EEEEeCCCCcccCCchHHHHHhh-c---h------HH---HHHhhc-CCCChHHHHHHHHHHHHHcCCCHHHHHHHHh--
Q 044369 5 VVVFDFDKTIIDCDSDNWVVDEL-H---A------TE---LFNQLL-PTMPWNSLMGRMMEELHAQGKTIEDIVEVLK-- 68 (157)
Q Consensus 5 ~viFD~DgTL~d~~~~~~~~~~~-g---~------~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 68 (157)
+++||+||||++.++...++..+ + . .. .+.... +.....+....+.... -.+.+.+++.+...
T Consensus 1 ~a~FD~DgTL~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~l~~~~~~~ 79 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTLFIFLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDA-LAGLLEEDVRAIVEEF 79 (202)
T ss_pred CeEEccCCCCCCCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH-HcCCCHHHHHHHHHHH
Confidence 47999999999998754333221 0 0 00 011111 1111222222222211 23777777655333
Q ss_pred -----hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 69 -----RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 69 -----~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
...++||+.++|+.++++|++++|+|+++...++.+++++|+..+|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 80 VNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred HHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 256899999999999999999999999999999999999999876654
No 62
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.37 E-value=2.2e-11 Score=85.56 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=71.3
Q ss_pred CceEEEEeCCCCcccCCchHHHHHhhc-hH--------HH-HHhhcC-----CCChHHHHHHHHHHHHHcCCCHHHHHH-
Q 044369 2 ADIVVVFDFDKTIIDCDSDNWVVDELH-AT--------EL-FNQLLP-----TMPWNSLMGRMMEELHAQGKTIEDIVE- 65 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~~~~~~~~~~g-~~--------~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~- 65 (157)
+.+.++|||||||++.++...++...- .. +. .....+ ...... ...+.... -.+.+.+++.+
T Consensus 4 ~~~la~FDfDgTLt~~ds~~~fl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~g~~~~~l~~~ 81 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFGSFLRFLLRHLPLNALLVIPLLPIIAIALLIGGRAARWP-MSLLLWAC-TFGHREAHLQDL 81 (210)
T ss_pred cCcEEEEcCCCCCccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccccchh-hHHHHHHH-HcCCCHHHHHHH
Confidence 357899999999999988754443321 11 00 000111 000111 11111111 12555544433
Q ss_pred ------HHhh-CCCChhHHHHHH-HHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 66 ------VLKR-APIHPSIISAVK-AAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 66 ------~~~~-~~~~pg~~e~l~-~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
.+.. ..++||+.+.|+ .++++|++++|+||++..+++.+.+..++..- +.+++++.
T Consensus 82 ~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~l 145 (210)
T TIGR01545 82 EADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQI 145 (210)
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEEe
Confidence 2222 368999999996 78889999999999999999999998776442 45666544
No 63
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.35 E-value=6.9e-13 Score=86.24 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCC-ChHHHHHHHHHCC-------cccccchheeC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDA-NLFFIETILKHHG-------IWELFSEINTN 120 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~-~~~~~~~~~~~~~-------l~~~fd~i~~~ 120 (157)
.++||+.++|++|+++|++++|+||+ ....+...+++.+ +.++|+.+++.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~ 86 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIG 86 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhc
Confidence 78999999999999999999999999 8888888899988 88999988853
No 64
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.33 E-value=1.7e-12 Score=91.67 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCceEEEEeCCCCcccC-C----chHHHHHhhchH-H----------HHH----------hhcCCCChHHHHHHHHHHHH
Q 044369 1 MADIVVVFDFDKTIIDC-D----SDNWVVDELHAT-E----------LFN----------QLLPTMPWNSLMGRMMEELH 54 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~-~----~~~~~~~~~g~~-~----------~~~----------~~~~~~~~~~~~~~~~~~~~ 54 (157)
|.+++|+||++|||+.. . .+..+.+.+|++ . .+. ...+.+.+.++...+.....
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~f 84 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVESTF 84 (237)
T ss_pred cceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHHh
Confidence 35899999999999984 2 234455666664 0 111 01112345555554443333
Q ss_pred H-cCCC-HHHHHH-----HH-----hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 55 A-QGKT-IEDIVE-----VL-----KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 55 ~-~~~~-~~~~~~-----~~-----~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
. .+.. .++... .+ ..+.+.+++.++++.|++.|..++++||.... .+..+..+++..+||.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~~l~~~fD~vv---- 159 (237)
T KOG3085|consen 85 GKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPLGLSAYFDFVV---- 159 (237)
T ss_pred ccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhccCHHHhhhhhh----
Confidence 2 2222 222221 11 14667889999999999999999999999887 558889999999999988
Q ss_pred eeccCCcEEEeeccC
Q 044369 123 FVDEEGRLKIFPHHD 137 (157)
Q Consensus 123 ~~~~~~~~~~~p~~~ 137 (157)
.....|..||+|.-+
T Consensus 160 ~S~e~g~~KPDp~If 174 (237)
T KOG3085|consen 160 ESCEVGLEKPDPRIF 174 (237)
T ss_pred hhhhhccCCCChHHH
Confidence 444555556666554
No 65
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.28 E-value=1.8e-11 Score=88.71 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=46.8
Q ss_pred CC-hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 72 IH-PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 72 ~~-pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
+. ||+.++|++|+++|++++|+||+.+..+...++++|+..+|+.|+++.+
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCc
Confidence 44 8999999999999999999999999999999999999999999996444
No 66
>PLN02811 hydrolase
Probab=99.25 E-value=2.6e-11 Score=85.76 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCCcccCC-----chHHHHHhhchHHH---HHhhcCCCChHHHHHHHHHHHHHc-CCCHHHHHH--------HHhhCCC
Q 044369 10 FDKTIIDCD-----SDNWVVDELHATEL---FNQLLPTMPWNSLMGRMMEELHAQ-GKTIEDIVE--------VLKRAPI 72 (157)
Q Consensus 10 ~DgTL~d~~-----~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~ 72 (157)
|||||+|+. ++..+++++|++.. ...+.+. ........+....... ....+++.+ ......+
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGK-KAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDL 79 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCC-CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 799999994 44566677776421 1222222 2222223332322110 112222221 2235778
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHH-HHHHCCcccccchheeCCceeccCCcEEEeeccC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIET-ILKHHGIWELFSEINTNSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~-~~~~~~l~~~fd~i~~~~~~~~~~~~~~~~p~~~ 137 (157)
+||+.++|+.|+++|++++|+||+....... ..++.++.++|+.+++..+. ..+..||.|..+
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~--~~~~~KP~p~~~ 143 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDP--EVKQGKPAPDIF 143 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChh--hccCCCCCcHHH
Confidence 9999999999999999999999998865544 44445788999998854310 334456766554
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.22 E-value=2.7e-11 Score=78.50 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=63.9
Q ss_pred EEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHHHHH
Q 044369 5 VVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAAH 84 (157)
Q Consensus 5 ~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~ 84 (157)
+++||+||||+..+..... .....++|++.++|+.|+
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~l~~l~ 37 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-------------------------------------------IEELELYPGVKEALKELK 37 (139)
T ss_pred CeEEccCCceEccCccccc-------------------------------------------cccCCcCcCHHHHHHHHH
Confidence 4799999999998653332 456889999999999999
Q ss_pred HcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 85 DLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 85 ~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
++|++++++||+....++..++.+++..+|+.+++.
T Consensus 38 ~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~ 73 (139)
T cd01427 38 EKGIKLALATNKSRREVLELLEELGLDDYFDPVITS 73 (139)
T ss_pred HCCCeEEEEeCchHHHHHHHHHHcCCchhhhheecc
Confidence 999999999999999999999999998888888863
No 68
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.16 E-value=7e-11 Score=83.44 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=42.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC---Ccccccchhe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH---GIWELFSEIN 118 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~---~l~~~fd~i~ 118 (157)
..++||+.++|++|+++|++++|+||++...+...+++. ++..+|+.++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f 145 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF 145 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE
Confidence 569999999999999999999999999999888888886 5666665544
No 69
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.16 E-value=8.7e-10 Score=79.94 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=66.2
Q ss_pred HcCCCHHHHHHHHh--hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCceeccCCcEE
Q 044369 55 AQGKTIEDIVEVLK--RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSSFVDEEGRLK 131 (157)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~~~~~~ 131 (157)
+.+.+.+++.+... ...+.||+.++++.|+++|++++|+|++....++.++++.|+...+..|++|...++..|.+.
T Consensus 103 ~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvlt 181 (277)
T TIGR01544 103 QQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLK 181 (277)
T ss_pred cCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEe
Confidence 45778999998886 799999999999999999999999999999999999999999877888988877444445443
No 70
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.15 E-value=2.3e-10 Score=83.10 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
||+.++|++|+++|++++|+||+++..+...++++|+..+|+.|+++..
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCC
Confidence 8889999999999999999999999999999999999999999998666
No 71
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.15 E-value=8.3e-12 Score=84.95 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=48.3
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCC-ChHHHHHHHHHCCcc---------cccchhee
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDA-NLFFIETILKHHGIW---------ELFSEINT 119 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~-~~~~~~~~~~~~~l~---------~~fd~i~~ 119 (157)
....++||+.++|+.|+++|++++|+||+ ....++..++.+++. ++|+.+++
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~ 103 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIE 103 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeee
Confidence 35789999999999999999999999998 888999999999998 99999886
No 72
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.10 E-value=3.6e-10 Score=73.70 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCC--------hHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDAN--------LFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~--------~~~~~~~~~~~~l~ 111 (157)
..++||+.++|+.|+++|++++|+||++ ...+...++++++.
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4589999999999999999999999999 88899999999986
No 73
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.09 E-value=1.4e-10 Score=79.69 Aligned_cols=66 Identities=15% Similarity=-0.001 Sum_probs=47.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh---------------HHHHHHHHHCCcccccchheeCCc-eeccCCcEEEe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL---------------FFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIF 133 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~---------------~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~ 133 (157)
+.++||+.++|++|+++|++++|+||++. ..+...++++|+ +|+.++.... ..+..+..||.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCC
Confidence 67899999999999999999999999873 344556677776 3777664332 12234556777
Q ss_pred eccC
Q 044369 134 PHHD 137 (157)
Q Consensus 134 p~~~ 137 (157)
|..+
T Consensus 106 p~~~ 109 (181)
T PRK08942 106 PGML 109 (181)
T ss_pred HHHH
Confidence 7654
No 74
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.08 E-value=4.4e-10 Score=76.19 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH------------HHHHHHHHCCcccccchhe
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF------------FIETILKHHGIWELFSEIN 118 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~------------~~~~~~~~~~l~~~fd~i~ 118 (157)
++||+.++|+.|+++|++++|+||.+.. .+...++++|+.. +.++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii 99 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLA 99 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEE
Confidence 6899999999999999999999998863 4678889999853 4444
No 75
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.04 E-value=3.1e-10 Score=76.55 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=49.1
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCC---------------hHHHHHHHHHCCcccccchheeCCc-eeccCCcEEE
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDAN---------------LFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKI 132 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~---------------~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~ 132 (157)
...++||+.++|+.|+++|++++|+||.+ ...+...++++|+. ||.++..+. ..+..+..+|
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 36899999999999999999999999973 55788889999997 776652221 1233344466
Q ss_pred eeccC
Q 044369 133 FPHHD 137 (157)
Q Consensus 133 ~p~~~ 137 (157)
.|...
T Consensus 105 ~~~~~ 109 (161)
T TIGR01261 105 KIKLL 109 (161)
T ss_pred CHHHH
Confidence 66443
No 76
>PRK08238 hypothetical protein; Validated
Probab=99.04 E-value=1.7e-09 Score=84.34 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=69.8
Q ss_pred eEEEEeCCCCcccCCchHHHHHh-hchHHHHH-----hhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHH
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDE-LHATELFN-----QLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSII 77 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~-~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 77 (157)
..++||+||||++++...+.+-. +...++.. .... +...+.+.+.+. .+.+. ...++.||+.
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~--g~a~lK~~~a~~---~~~d~-------~~lp~~pga~ 78 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLR--GKAALKRRLARR---VDLDV-------ATLPYNEEVL 78 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHh--cHHHHHHHHHhh---cCCCh-------hhCCCChhHH
Confidence 46899999999999876554433 22222111 1111 122222222221 12222 2356889999
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
+++++++++|++++++||+++..++.+++++|+ ||.+++...
T Consensus 79 e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~ 120 (479)
T PRK08238 79 DYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDG 120 (479)
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCC
Confidence 999999999999999999999999999999998 788887544
No 77
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.00 E-value=9.9e-10 Score=78.30 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=44.3
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCC----hHHHHHHHHHCCc--ccccchheeC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDAN----LFFIETILKHHGI--WELFSEINTN 120 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~----~~~~~~~~~~~~l--~~~fd~i~~~ 120 (157)
...++||+.++|+.|+++|++++++||.+ ...+..+++.+|+ .++|+.+++.
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~g 169 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAG 169 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcC
Confidence 37789999999999999999999999964 5577777888999 8888877753
No 78
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.99 E-value=8.9e-10 Score=75.41 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=38.9
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCCh---------------HHHHHHHHHCCcccccchhee
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANL---------------FFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~---------------~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.+.++||+.++|++|+++|++++|+||.+. ..+...+.++++. |+.++.
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~ 87 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYY 87 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEE
Confidence 477999999999999999999999999985 3445566666665 666553
No 79
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=70.81 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=74.4
Q ss_pred ceEEEEeCCCCcccCCch----------HHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHH-HcCCCHHHHHHHHh---
Q 044369 3 DIVVVFDFDKTIIDCDSD----------NWVVDELHATELFNQLLPTMPWNSLMGRMMEELH-AQGKTIEDIVEVLK--- 68 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 68 (157)
++.++||+|+||.....- ..+.+++|+++.-..-+...-+.++.-.+..... +...+.++..+...
T Consensus 15 ~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~~~L 94 (244)
T KOG3109|consen 15 YKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVHGRL 94 (244)
T ss_pred ceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhhccC
Confidence 688999999999987533 2233444443211111100011221111111111 12344666666443
Q ss_pred ---hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 69 ---RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 69 ---~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.+.|.+-.+++|-.|+.++ .++.||+....+...++.+||.++|+.|++
T Consensus 95 Plq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~ 146 (244)
T KOG3109|consen 95 PLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIIC 146 (244)
T ss_pred cHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeE
Confidence 4889999999999998764 899999999999999999999999999995
No 80
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.96 E-value=9.6e-10 Score=73.12 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=36.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh---------------HHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL---------------FFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~---------------~~~~~~~~~~~l~ 111 (157)
+.++||+.++|+.|+++|++++|+||.+. ..+...++++++.
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 46899999999999999999999999884 4567778888886
No 81
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.88 E-value=4.6e-09 Score=72.37 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS 122 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~ 122 (157)
|++.++|+.++++|++++|+|+++...++.+++.+|+... .++++..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~--~v~~~~~ 138 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDD--NVIGNEL 138 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEG--GEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCce--EEEEEee
Confidence 5555999999999999999999999999999999998742 3555433
No 82
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.86 E-value=7e-09 Score=74.45 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH--HHHHHCCccc-ccchheeCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE--TILKHHGIWE-LFSEINTNS 121 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~--~~~~~~~l~~-~fd~i~~~~ 121 (157)
..++||+.++|++|+++|++++++||+++.... ..++++|+.. +|+.|+++.
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG 77 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH
Confidence 457999999999999999999999999887665 7889999997 999998843
No 83
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.84 E-value=1.3e-07 Score=70.75 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC-C-------cccccchhee---CCceec
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH-G-------IWELFSEINT---NSSFVD 125 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~-~-------l~~~fd~i~~---~~~~~~ 125 (157)
....||+.++|+.|+++|++++|+||++..++...++.+ | +.++||.|++ -|.|+.
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~ 249 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFT 249 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccC
Confidence 778999999999999999999999999999999999996 7 8999999988 355443
No 84
>PRK06769 hypothetical protein; Validated
Probab=98.81 E-value=4.7e-09 Score=71.66 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=36.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChH--------HHHHHHHHCCcccccch
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLF--------FIETILKHHGIWELFSE 116 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~--------~~~~~~~~~~l~~~fd~ 116 (157)
..++||+.++|++|+++|++++|+||++.. .....++.+|+..+|..
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 81 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLC 81 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEEC
Confidence 568999999999999999999999998742 23344677787765543
No 85
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.76 E-value=3.1e-09 Score=79.28 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH----CCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH----HGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~----~~l~~~fd~i~~ 119 (157)
++||+.++|+.|+++|++++|+||++...+...+++ +++.++|+.+.+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 589999999999999999999999999999999999 899999998765
No 86
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.75 E-value=7.1e-08 Score=69.91 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=41.6
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHHCCcccc-cchhee
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKHHGIWEL-FSEINT 119 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~~~l~~~-fd~i~~ 119 (157)
....++||+.++|+.|+++|++++++||++.. .+...++.+|+... ++.++.
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lll 170 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLL 170 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEe
Confidence 35778999999999999999999999998754 44577888898754 455554
No 87
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.71 E-value=6.5e-08 Score=68.70 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=50.0
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHH
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAV 80 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l 80 (157)
|++|.++||+||||++.+ ..+.|.+.+.|
T Consensus 1 m~~kli~~DlDGTLl~~~---------------------------------------------------~~i~~~~~~al 29 (230)
T PRK01158 1 MKIKAIAIDIDGTITDKD---------------------------------------------------RRLSLKAVEAI 29 (230)
T ss_pred CceeEEEEecCCCcCCCC---------------------------------------------------CccCHHHHHHH
Confidence 778999999999999852 11334555788
Q ss_pred HHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 81 KAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 81 ~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
++|+++|++++++|+.+...+...++.+++..
T Consensus 30 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 30 RKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 88889999999999999999988888888764
No 88
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.71 E-value=6.4e-08 Score=70.67 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHH
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAV 80 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l 80 (157)
||+|.+++|+||||++.+ ..+.|++.++|
T Consensus 2 ~~~kli~~DlDGTLl~~~---------------------------------------------------~~~~~~~~~ai 30 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHH---------------------------------------------------TYSYEPAKPAL 30 (273)
T ss_pred CcceEEEEcCcccCcCCC---------------------------------------------------CcCcHHHHHHH
Confidence 789999999999999851 01234556889
Q ss_pred HHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 81 KAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 81 ~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
+.|+++|++++++|+.+...+...++.+++..+
T Consensus 31 ~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~ 63 (273)
T PRK00192 31 KALKEKGIPVIPCTSKTAAEVEVLRKELGLEDP 63 (273)
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999998654
No 89
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.68 E-value=4.3e-09 Score=70.56 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=45.6
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc-eeccCCcEEEeeccC
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIFPHHD 137 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~p~~~ 137 (157)
+|++|+++|++++|+||.+...+...++++|+..+|+..-..|. +.....+++..|.++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 95 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQSNKLIAFSDILEKLALAPENV 95 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecccchHHHHHHHHHHcCCCHHHE
Confidence 79999999999999999999999999999999988876544444 444444555444443
No 90
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.66 E-value=4e-08 Score=66.90 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCC-hHHHHHHHHHCCcccccchheeCCc-eeccCCcEEEeeccC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDAN-LFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIFPHHD 137 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~-~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~p~~~ 137 (157)
..++||+.++|+.|+++|++++|+||++ ...+..+++++++..++...-.+|. +.....+++..|.++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~ 111 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQV 111 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHHE
Confidence 4678999999999999999999999999 6777778788887644322222444 444445555555443
No 91
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.59 E-value=1.4e-08 Score=68.79 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=32.0
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCC-ChHHHHHHHHHCCcc
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDA-NLFFIETILKHHGIW 111 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~-~~~~~~~~~~~~~l~ 111 (157)
....++|++.++|+.|+++|++++++|-+ ....++.+++.+++.
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 56889999999999999999999999955 455899999999999
No 92
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.57 E-value=4.9e-08 Score=65.00 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=58.7
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc-ccchheeC-------CceeccCCcEEEeeccCC--
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE-LFSEINTN-------SSFVDEEGRLKIFPHHDF-- 138 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~-~fd~i~~~-------~~~~~~~~~~~~~p~~~~-- 138 (157)
...++||+.++|++|+ ++++++|+||++..+++.+++++++.. +|+.|++. |.+..++.+++..|.++.
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i 121 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIII 121 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEE
Confidence 4678999999999998 579999999999999999999999865 56888863 234445566666666653
Q ss_pred CCCCCCCC
Q 044369 139 TKSSHACS 146 (157)
Q Consensus 139 ~~~~~~c~ 146 (157)
+.++.++.
T Consensus 122 ~Ds~~~~~ 129 (148)
T smart00577 122 DDSPDSWP 129 (148)
T ss_pred ECCHHHhh
Confidence 44545554
No 93
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.57 E-value=1e-07 Score=71.71 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCC---------------ChHHHHHHHHHCCcccccchheeCCc-eeccCCcEEEe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDA---------------NLFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIF 133 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~---------------~~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~ 133 (157)
..++||+.++|+.|+++|++++|+||. +...+..+++.+++. |+.++..+. ..+..+.-+|.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCC
Confidence 789999999999999999999999995 344566778888884 666653222 12233333555
Q ss_pred ecc
Q 044369 134 PHH 136 (157)
Q Consensus 134 p~~ 136 (157)
|..
T Consensus 107 p~~ 109 (354)
T PRK05446 107 TGL 109 (354)
T ss_pred HHH
Confidence 544
No 94
>PLN02645 phosphoglycolate phosphatase
Probab=98.57 E-value=2.3e-07 Score=68.99 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHHCCcccccchhee
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~~~l~~~fd~i~~ 119 (157)
.++||+.++|+.|+++|++++++||++.. .+...++.+|+...++.|++
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~t 95 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFS 95 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEee
Confidence 46799999999999999999999999844 34445578899877888877
No 95
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.53 E-value=3.3e-07 Score=72.24 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCCh------------HHHHHHHHHCCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANL------------FFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~------------~~~~~~~~~~~l~~~fd~i~~ 119 (157)
++||+.+.|+.|++.||+++|+||.+. ..+..+++++|+. |+.+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia 255 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIA 255 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEe
Confidence 689999999999999999999999877 3578888999985 786664
No 96
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.51 E-value=2.4e-07 Score=64.74 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
.+++|++.++|+.|+++|++++++|+.+...+..+.+.+|+.+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD 168 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc
Confidence 5689999999999999999999999999999999999999964
No 97
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.45 E-value=2.2e-07 Score=59.38 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=48.9
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
....++|.++++++++++.|+-++.+|=+....+-..++.+++..||+.++..
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vie 90 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIE 90 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEec
Confidence 35789999999999999999999999999999899999999999999998863
No 98
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.44 E-value=3e-07 Score=61.26 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
....-|.+.+++..+++.|+++.|+||+++.-+..+.+++|+.
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc
Confidence 4667788889999999999999999999999999999999986
No 99
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.42 E-value=1.5e-06 Score=58.85 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=50.4
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC---Cccc----ccchhee----CCceeccCCcEEEeeccC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH---GIWE----LFSEINT----NSSFVDEEGRLKIFPHHD 137 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~---~l~~----~fd~i~~----~~~~~~~~~~~~~~p~~~ 137 (157)
..+++|++.+.|++-++.|.+++|-|+++...+.-++.+. .+.+ |||..++ ..+|...++..+..|.+.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 3789999999999999999999999999999888777664 3334 5555444 122555556665555554
No 100
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.42 E-value=1e-06 Score=64.11 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
++|++|+++|++++++|+.+...+...++.+++..
T Consensus 27 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 27 QAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 66788888899999999999998888888888754
No 101
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.40 E-value=1.2e-06 Score=61.71 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
+.|...+.|++|++.|++++++|+.+...+...++.+++..
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 34556688999999999999999999999999999888763
No 102
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.38 E-value=4.2e-06 Score=59.32 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=41.0
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHH---HHHHHHHCCcccccchhe
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFF---IETILKHHGIWELFSEIN 118 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~---~~~~~~~~~l~~~fd~i~ 118 (157)
...++.|++.++++.|+++|++++++|+.+... +...+...|+..+ +.++
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~Li 169 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLI 169 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-Ceee
Confidence 357899999999999999999999999999765 6677777887754 4433
No 103
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.36 E-value=1.6e-06 Score=63.63 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCCh---HHHHHHHHHCCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANL---FFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~---~~~~~~~~~~~l~~~fd~i~~ 119 (157)
++||+.++|++|+++|++++++||++. ......++.+|+....+.|++
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~t 69 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFS 69 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEec
Confidence 577888999999999999999999753 344456788888765666766
No 104
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.35 E-value=1.8e-06 Score=62.77 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.|++++++|++++++|+.+...+...++.+++.
T Consensus 27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 27 EALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5566677777888888888777777777777664
No 105
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.35 E-value=1.3e-06 Score=63.32 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHHCCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~~~l~~~fd~i~~ 119 (157)
+.||+.++|+.|+++|++++++||++.. .+...++.+|+.--.+.|++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~t 72 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFT 72 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEc
Confidence 6789999999999999999999998666 36677788888754566776
No 106
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.33 E-value=2.2e-06 Score=61.90 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCC---ChHHHHHHHHHCCcccccchhee
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDA---NLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~---~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.|++.++|++|+++|++++++||+ +...+...++.+|+....|.|++
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit 68 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFT 68 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEee
Confidence 457789999999999999999984 46677788888998876677776
No 107
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.28 E-value=1.8e-06 Score=58.07 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHH---HHHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIE---TILKH 107 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~---~~~~~ 107 (157)
.|++.+++++++++|+++.++|+++..... .+++.
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 599999999999999999999999988664 56666
No 108
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.28 E-value=3.6e-06 Score=61.09 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=49.3
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHH
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAV 80 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l 80 (157)
|++|+++||+||||++.+.. +.|.+.++|
T Consensus 1 ~~~kli~~DlDGTLl~~~~~---------------------------------------------------i~~~~~~al 29 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKT---------------------------------------------------ISPETKEAL 29 (264)
T ss_pred CCeeEEEEcCCCCccCCCCc---------------------------------------------------cCHHHHHHH
Confidence 78999999999999987331 112234677
Q ss_pred HHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 81 KAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 81 ~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
+.++++|++++++|+++...+...++.+++..
T Consensus 30 ~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 30 ARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 78888899999999999999999999998875
No 109
>PRK10444 UMP phosphatase; Provisional
Probab=98.27 E-value=3.5e-06 Score=60.77 Aligned_cols=48 Identities=15% Similarity=0.006 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHH---HHHHHHCCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFI---ETILKHHGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~---~~~~~~~~l~~~fd~i~~ 119 (157)
+.||+.++|++|+++|.+++++||++.... ...++.+|+.---+.|++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~t 68 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT 68 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEec
Confidence 468999999999999999999999987644 444455677533445555
No 110
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.22 E-value=5.8e-06 Score=53.38 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChH---------------HHHHHHHHCCcccccchhee
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLF---------------FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---------------~~~~~~~~~~l~~~fd~i~~ 119 (157)
.+.+++.+.|+.++++|+.++++|+.+.. .+..++++.++. +|.++.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--Yd~l~~ 85 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--YDEIYV 85 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--CceEEe
Confidence 56778889999999999999999999765 445667777776 566554
No 111
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.22 E-value=2e-06 Score=59.56 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=45.4
Q ss_pred eE-EEEeCCCCcccCC-chHHH-HHhhchH--HHHHhhcCCCChHHHHHHHHHHHHH-cCCCHHHHHH------HHhhCC
Q 044369 4 IV-VVFDFDKTIIDCD-SDNWV-VDELHAT--ELFNQLLPTMPWNSLMGRMMEELHA-QGKTIEDIVE------VLKRAP 71 (157)
Q Consensus 4 k~-viFD~DgTL~d~~-~~~~~-~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~ 71 (157)
+. |.+||||||.|.. .+... -+.++.. .........-.+.. +.. .....+.+.+ .+...+
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~e~~~~~~~~~~~~~~f~~l~ 73 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEK--------WGITEPEFYEKLWRFYEEPGFFSNLP 73 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHH--------HHHHSTTHHHHHHHHHTSTTTTTT--
T ss_pred CcEEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHH--------hCCCCHHHHHHHHHHHhChhhhcCCC
Confidence 45 8999999999984 23332 2334443 11222221110111 111 1111233333 344688
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.|||.|+|+.|.+.|+.++++|+.+..
T Consensus 74 p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 74 PIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 9999999999999999888888777654
No 112
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.20 E-value=6.2e-06 Score=60.12 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
+.|++|+++|++++++|+.+...+...++.+++..
T Consensus 26 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 26 STLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 56777777888888888888888888888887753
No 113
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.20 E-value=2.8e-07 Score=63.49 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=33.4
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
.++.|+++|++++|+||.+...+...++.+|+..+|+.
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g 93 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG 93 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 56677788999999999999999999999999877763
No 114
>PRK10976 putative hydrolase; Provisional
Probab=98.18 E-value=7.7e-06 Score=59.40 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.|++++++|++++++|+.+...+...++.+++.
T Consensus 26 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 26 ETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5566666777777777777777777777776654
No 115
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.08 E-value=0.00013 Score=57.67 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred ceEEEEeCCCCcccCC-chHHHHH-hhc---hH---------HHHH-hhcCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 044369 3 DIVVVFDFDKTIIDCD-SDNWVVD-ELH---AT---------ELFN-QLLPTMPWNSLMGRMMEELHAQGKTIEDIVEVL 67 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~-~~~~~~~-~~g---~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (157)
.+.++||+||||+..+ ++.+++. ..+ .. ++.. .... .+.......+.... -.|...+++.+..
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~~Fll~A~~~~~~~r~lllll~~P~~~l~~~~-~~~~~~~~~l~~~~-f~G~~~~el~~~~ 99 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFPYYLLVALEAGSLLRALILLLSVPFVYFTYLF-ISESLAIKTFVFIA-FAGLKIRDIELVS 99 (497)
T ss_pred ccEEEEecCCcccCCCCccHHHHHHHcccchHHHHHHHHHHhHHHHHHHhc-CCchhHHHHHHHHH-HcCCCHHHHHHHH
Confidence 3579999999999865 3332221 111 11 1111 1111 12222233332222 2366666654432
Q ss_pred -------hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH-CCcccccchheeCCc
Q 044369 68 -------KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH-HGIWELFSEINTNSS 122 (157)
Q Consensus 68 -------~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~-~~l~~~fd~i~~~~~ 122 (157)
....+.|.+.+.+ +++|.. +|+|++++.+++++++. +|++ .+++.+.
T Consensus 100 r~~l~~f~~~~l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid----~VIgTeL 154 (497)
T PLN02177 100 RSVLPKFYAEDVHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGAD----KVLGTEL 154 (497)
T ss_pred HHHHHHHHHHhcCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCC----EEEeccc
Confidence 1234677766654 456654 99999999999999976 7876 5665443
No 116
>PLN02887 hydrolase family protein
Probab=98.08 E-value=1.5e-05 Score=63.84 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+.|++++++|++++++|+.+...+...++.+++.
T Consensus 330 t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 330 NAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 447788899999999999999999999999888764
No 117
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.04 E-value=1.7e-06 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCC-hhHHHHHHHHHHcCCcEEEEeCC
Q 044369 70 APIH-PSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 70 ~~~~-pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
+.++ |++.+.|+.|.+.||.++|+||=
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 4444 57999999999999999999996
No 118
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.04 E-value=2.2e-05 Score=55.87 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.|...++|+.|+++|++++++|+.+...+..++..+++.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 3355668889999999999999999999999999999987
No 119
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.03 E-value=2.3e-05 Score=57.38 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
.+.|++|+++|++++++|+.+...+..+.+.+++..
T Consensus 24 ~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 24 RQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 367889999999999999999999999999999864
No 120
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.03 E-value=6.8e-06 Score=55.17 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=41.6
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCc-ccccchheeCC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGI-WELFSEINTNS 121 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l-~~~fd~i~~~~ 121 (157)
...++||+.++|+++.+. +.++|.|+++..+++.+++.+.. ..+|+.++...
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~ 86 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRD 86 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccccccccc
Confidence 366799999999999776 99999999999999999999886 46788877533
No 121
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.02 E-value=4.2e-05 Score=55.43 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=35.9
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHH---HHHHHHHCCccc
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFF---IETILKHHGIWE 112 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~---~~~~~~~~~l~~ 112 (157)
...++.||+.++++.+++.|++++++||.+... ...-|+..|+..
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 357889999999999999999999999998653 444455567643
No 122
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.01 E-value=3.9e-06 Score=59.80 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHH---HHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFF---IETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~---~~~~~~~~~l~ 111 (157)
..+.||+.+++..++++|+.++++||.+... ...-|+..|+.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~ 158 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP 158 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC
Confidence 4789999999999999999999999997763 34445566754
No 123
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.94 E-value=1.2e-05 Score=59.46 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc-ccchheeCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE-LFSEINTNS 121 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~-~fd~i~~~~ 121 (157)
..++||+.++|+.|+++|++++++||.+....+..++++++.+ +|+.+++.+
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~ 238 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRP 238 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCc
Confidence 4689999999999999999999999999999999999999997 999988754
No 124
>PTZ00174 phosphomannomutase; Provisional
Probab=97.93 E-value=4.3e-05 Score=55.09 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=16.1
Q ss_pred CCceEEEEeCCCCcccCC
Q 044369 1 MADIVVVFDFDKTIIDCD 18 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~ 18 (157)
|.+|.|+||+||||++.+
T Consensus 3 ~~~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPR 20 (247)
T ss_pred CCCeEEEEECcCCCcCCC
Confidence 679999999999999873
No 125
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.92 E-value=2.6e-05 Score=48.48 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~~~l~~~fd~i~~ 119 (157)
..+.||+.++|++|+++|.++.++||++.. .....++.+|+.--.+.|++
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t 65 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT 65 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC
Confidence 468999999999999999999999999744 44555588898866677776
No 126
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.90 E-value=3.8e-05 Score=57.50 Aligned_cols=46 Identities=9% Similarity=-0.069 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHc----CCcEEEEeCCC---hH-HHHHHHHHCCcccccchhe
Q 044369 73 HPSIISAVKAAHDL----GCDLKIVSDAN---LF-FIETILKHHGIWELFSEIN 118 (157)
Q Consensus 73 ~pg~~e~l~~L~~~----g~~~~ivSn~~---~~-~~~~~~~~~~l~~~fd~i~ 118 (157)
.||+.++++.|+.+ |+++.++||+. .. ..+.+.+.+|+.--.+.|+
T Consensus 18 i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~ 71 (321)
T TIGR01456 18 IAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVI 71 (321)
T ss_pred cHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHH
Confidence 56666677777666 77777777775 23 2333346666543333333
No 127
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.87 E-value=6e-05 Score=60.99 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+.|+.|+++|++++++|+.+...+..+++.+++.
T Consensus 439 ~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 439 LDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 36788899999999999999999999999999875
No 128
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.86 E-value=5.9e-05 Score=54.55 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.++++.|+++|++++++|+.+...+..+++.+++.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 347788888899999999999999999999999875
No 129
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.83 E-value=8.2e-05 Score=51.85 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
|.+.+.|+.|+++|++++++|+++...+..+++.+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 66778899999999999999999999999988874
No 130
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.82 E-value=8.5e-05 Score=54.23 Aligned_cols=34 Identities=6% Similarity=0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.|++|+++|++++++|+.+...+...++.+++.
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 6678888899999999999999999999999874
No 131
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.80 E-value=3.7e-05 Score=51.97 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=45.4
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc-ccchhee
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE-LFSEINT 119 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~-~fd~i~~ 119 (157)
....+||+.++|+.|.+. +.++|.|++++.+++.++++++... +|+.+++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~ 90 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLY 90 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEE
Confidence 367899999999999987 9999999999999999999999876 8888776
No 132
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.73 E-value=0.00092 Score=52.41 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=58.8
Q ss_pred ceEEEEeCCCCccc-CCchHHHHH---h-hchHHHH--------HhhcC--CCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 044369 3 DIVVVFDFDKTIID-CDSDNWVVD---E-LHATELF--------NQLLP--TMPWNSLMGRMMEELHAQGKTIEDIVEVL 67 (157)
Q Consensus 3 ~k~viFD~DgTL~d-~~~~~~~~~---~-~g~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (157)
.+.++||+||||+. .+++.+++. + -|..... ..... ...... ... .-...-.|...+++.+..
T Consensus 8 ~~~~~fD~DGTLlrs~ssFpyFmlva~eagG~~R~~~LL~l~P~l~ll~~~~~~~~~-lK~-mi~v~f~Gl~~~die~va 85 (498)
T PLN02499 8 SYSVVSELEGTLLKDADPFSYFMLVAFEASGLIRFALLLFLWPIIRLLDMLGMGDAA-LKL-MIFVATAGVHESEIESVA 85 (498)
T ss_pred cceEEEecccceecCCCccHHHHHHHHHhccHHHHHHHHHHhHHHHHHHhcCCchHH-HHH-HHHHHhCCCCHHHHHHHH
Confidence 56899999999998 455554443 2 2322111 01110 011111 222 222222366666665422
Q ss_pred hh-------CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH-CCcc
Q 044369 68 KR-------APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH-HGIW 111 (157)
Q Consensus 68 ~~-------~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~-~~l~ 111 (157)
+. -.+.+. .++.+++.| +.+|+|.+++.+++.+++. +|.+
T Consensus 86 Ravlpkf~~~dv~~e---~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 86 RAVLPKFYMDDVDME---AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred HHHhhHHHHhhCCHH---HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 21 223343 556667777 9999999999999999998 7765
No 133
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.64 E-value=9.5e-05 Score=49.65 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=44.5
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc-ccc-chhee
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW-ELF-SEINT 119 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~-~~f-d~i~~ 119 (157)
...++||+.++|+.|++. +.++|+|++++.++..+++.++.. .+| +.+++
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~ 107 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIIS 107 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEE
Confidence 477899999999999965 999999999999999999999988 488 55665
No 134
>PTZ00445 p36-lilke protein; Provisional
Probab=97.64 E-value=0.00012 Score=51.16 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChH---------------HHHHHHHHCCcccccchhee-CCce------eccCC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLF---------------FIETILKHHGIWELFSEINT-NSSF------VDEEG 128 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---------------~~~~~~~~~~l~~~fd~i~~-~~~~------~~~~~ 128 (157)
.+.|....++..|++.|++++|||=+... .++..+++.+...-...+++ +|.+ ....+
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 45677788999999999999999998874 46777776665544445554 3333 33458
Q ss_pred cEEEeecc
Q 044369 129 RLKIFPHH 136 (157)
Q Consensus 129 ~~~~~p~~ 136 (157)
..+|+|..
T Consensus 155 l~KPdp~i 162 (219)
T PTZ00445 155 LDAPMPLD 162 (219)
T ss_pred ccCCCccc
Confidence 88888877
No 135
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.57 E-value=0.00016 Score=50.27 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=36.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
...+|++.++|+.+.+. +.++|-|+++..++..+++.+++.
T Consensus 44 ~~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVL 84 (195)
T ss_pred EEeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhccc
Confidence 35789999999999985 999999999999999999988753
No 136
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.54 E-value=0.00038 Score=49.41 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=36.6
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHH----HHHHHHHCCcccc
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFF----IETILKHHGIWEL 113 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~----~~~~~~~~~l~~~ 113 (157)
....+.||+.|++.+.-+.|..+..+||..+.. ...-+...|+...
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~ 168 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQV 168 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccc
Confidence 457899999999999999999999999998875 3344455566643
No 137
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=97.51 E-value=0.00068 Score=45.95 Aligned_cols=36 Identities=19% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCC--cEEEEeCCC-------hHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGC--DLKIVSDAN-------LFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~--~~~ivSn~~-------~~~~~~~~~~~~l~ 111 (157)
..+.++++++.+. ++.|+||+. ...++.+.+.+|+.
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP 108 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc
Confidence 3344555555544 488888873 55667777777764
No 138
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.51 E-value=0.00029 Score=51.37 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHH-cCCcEEEEeCCChHHHHHHHHHCC
Q 044369 72 IHPSIISAVKAAHD-LGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 72 ~~pg~~e~l~~L~~-~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
+.|.+.+.|+.|++ .|++++|+|+.+...+..+++.++
T Consensus 37 i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 37 VPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 34677788888887 689999999999988887776554
No 139
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.50 E-value=4.4e-05 Score=51.90 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=46.8
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc-eeccCCcEEEeeccC
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIFPHHD 137 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~p~~~ 137 (157)
.+..|+++|++++|+||.+...++..++++|+..+|+.+-..|. +.....+++..|.++
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev 101 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEV 101 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHE
Confidence 46677788999999999999999999999999999987654455 555556666666554
No 140
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.40 E-value=0.00067 Score=48.62 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=52.0
Q ss_pred HcCCCHHHHHHHHh--hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc--hheeCCceeccCCcE
Q 044369 55 AQGKTIEDIVEVLK--RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS--EINTNSSFVDEEGRL 130 (157)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd--~i~~~~~~~~~~~~~ 130 (157)
+.+.+.+++.+..+ .+.+++|+.++++.|+++++|+.|.|++-...++.++++.+.. ++ .|++|-..++..|.+
T Consensus 72 ~~~l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~--~~Nv~VvSN~M~Fd~~g~l 149 (246)
T PF05822_consen 72 EQGLTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVF--HPNVKVVSNFMDFDEDGVL 149 (246)
T ss_dssp HHT-BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT----BTTEEEEEE-EEE-TTSBE
T ss_pred hcCcCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCC--CCCeEEEeeeEEECCcceE
Confidence 44777777777766 4778999999999999999999999999999999999998544 34 377776655555544
Q ss_pred E
Q 044369 131 K 131 (157)
Q Consensus 131 ~ 131 (157)
.
T Consensus 150 ~ 150 (246)
T PF05822_consen 150 V 150 (246)
T ss_dssp E
T ss_pred e
Confidence 4
No 141
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.40 E-value=0.00031 Score=56.47 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=45.9
Q ss_pred CCCChhHHHHHHHHHHcC-CcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 70 APIHPSIISAVKAAHDLG-CDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g-~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
..++||+.++|++|+++| ++++++||.+...++..++++|+.++|..+.
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~ 432 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL 432 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC
Confidence 679999999999999999 9999999999999999999999998887654
No 142
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.32 E-value=0.0004 Score=55.54 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCCChhHHHHHHHHHHcCC-cEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGC-DLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~-~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.+++||+.++|++|+++|+ +++++||.+...++..++++|+.++|..+..
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p 411 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLP 411 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCc
Confidence 6789999999999999999 9999999999999999999999988776553
No 143
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.21 E-value=0.0015 Score=43.69 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHHC
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKHH 108 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~~ 108 (157)
..||+.++++.+++.||++..+|+.+.- ..+.++...
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 4578889999999999999999999754 444555544
No 144
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.0009 Score=48.77 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHH---HHHHHHH-CCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFF---IETILKH-HGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~---~~~~~~~-~~l~~~fd~i~~ 119 (157)
..++||+.++|+.|+++|.+++++||++... ....++. .+++...+.|++
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~T 76 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVT 76 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeec
Confidence 5689999999999999999999999997763 3344455 566666777776
No 145
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.05 E-value=0.0089 Score=42.39 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHh-hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 47 GRMMEELHAQGKTIEDIVEVLK-RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+.-.+...|.+.+++.+.-. ...+.||+.+.++.|.++ ++-+|+|.+..++++......|+.
T Consensus 58 kLivPFL~ahGVt~~dlrr~sE~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~P 122 (315)
T COG4030 58 KLIVPFLAAHGVTNRDLRRISELSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVP 122 (315)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHhhcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCC
Confidence 3444555566888888887655 488999999999999887 888999999999999999999884
No 146
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.99 E-value=0.002 Score=53.47 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHH-cCCcEEEEeCCChHHHHHHHHHCCc
Q 044369 71 PIHPSIISAVKAAHD-LGCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~-~g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
.+.+.+.+.|+.|.+ .|..++|+|+.+...++..+...++
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l 554 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPI 554 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCe
Confidence 345778899999998 4999999999999988887766543
No 147
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00033 Score=45.67 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCceEEEEeCCCCcccCCchHHHHHhhchHHHHHhhcCCCChHHHHHHHHHHHHH--cCCCHHHHHH--HHhhCCCChhH
Q 044369 1 MADIVVVFDFDKTIIDCDSDNWVVDELHATELFNQLLPTMPWNSLMGRMMEELHA--QGKTIEDIVE--VLKRAPIHPSI 76 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~pg~ 76 (157)
|+.+.+..|||.||.|.. .+...++.+- .. ..+........-.+.+.. .+.-.+-+.+ .+++....|++
T Consensus 1 m~kk~iaIDmD~vLadll--~ewv~~~N~y---~D--~~lk~~di~gwdik~yv~~~~g~i~~il~ep~fFRnL~V~p~a 73 (180)
T COG4502 1 MNKKTIAIDMDTVLADLL--REWVKRYNIY---KD--KLLKMSDIKGWDIKNYVKPECGKIYDILKEPHFFRNLGVQPFA 73 (180)
T ss_pred CCCceEEeeHHHHHHHHH--HHHHHHhhhc---cc--cCcChHhhcccchhhccCccCCeeeeeccCcchhhhcCccccH
Confidence 889999999999998872 2222222210 00 001111111111111110 1211222223 67789999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCChH------HHHHHHHHCCcccccchhee
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLF------FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~------~~~~~~~~~~l~~~fd~i~~ 119 (157)
.++++.|.+. |.++|+|..... -.+.+.+.+++-++-..|+|
T Consensus 74 q~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfC 121 (180)
T COG4502 74 QTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFC 121 (180)
T ss_pred HHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEe
Confidence 9999999997 999999998332 34455666777666555666
No 148
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0068 Score=43.52 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=51.6
Q ss_pred cCCCHHHHHHHHh--hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 56 QGKTIEDIVEVLK--RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 56 ~~~~~~~~~~~~~--~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.+.+..++.+..+ ++.+++|..+++..|.++++|+.|.|.+....++.+.+......-+-.+++
T Consensus 121 ~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vS 186 (298)
T KOG3128|consen 121 GGFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVS 186 (298)
T ss_pred CCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhh
Confidence 3677888888776 466889999999999999999999999999999998887654443444554
No 149
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.65 E-value=0.0052 Score=44.82 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNS 121 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~ 121 (157)
...|.+.+.|..|+++|..+++=|-|+++++...++.+++.++||.|++..
T Consensus 142 Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 142 IRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGG 192 (297)
T ss_pred cCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCC
Confidence 367999999999999999999999999999999999999999999999843
No 150
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0046 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
+.+.||+.+.+..|++.||+++|+||
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEEC
Confidence 67889999999999999999999999
No 151
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.62 E-value=0.0042 Score=50.09 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..++||+.++|++|+++|++++++||.+...++..++++|+.
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 668999999999999999999999999999999999999995
No 152
>PLN02580 trehalose-phosphatase
Probab=96.55 E-value=0.0092 Score=45.74 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
..+.|++.++|+.|.+. .+++|+|+.+...+..++.-.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~ 177 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLT 177 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCC
Confidence 45667889999999887 689999999999888877543
No 153
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.53 E-value=0.0089 Score=50.45 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=30.2
Q ss_pred CChhHHHHHHHH-HHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 72 IHPSIISAVKAA-HDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 72 ~~pg~~e~l~~L-~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
+.|++.++|+.| ++.|..++|+|+.+...++.++...
T Consensus 617 p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~ 654 (854)
T PLN02205 617 PSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPC 654 (854)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCC
Confidence 446788899998 6678999999999999888887553
No 154
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.44 E-value=0.027 Score=40.85 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH---CCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH---HGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~---~~l~ 111 (157)
-..-+.+.++++.|+++|+++..+|..+..+....++. +|++
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 44568999999999999999999999987766655554 4554
No 155
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=96.25 E-value=0.0093 Score=46.68 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=39.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC---------Ccccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH---------GIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~---------~l~~~fd~i~~ 119 (157)
+...|....+|+.|++.|.++.++||++-.++...++.+ ...++||.|++
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 456789999999999999999999999999999999875 35689999887
No 156
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.10 E-value=0.011 Score=49.81 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=44.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
-.++||+.+.|+.|+++|++++++|+.+....+.+++++|+..+|..+.
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~ 697 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL 697 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 5689999999999999999999999999999999999999987766554
No 157
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.03 E-value=0.019 Score=40.81 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
++.++|++|+++|++++++|+.+...+..+++.+|+..
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 45588999999999999999999999999999999864
No 158
>PLN02151 trehalose-phosphatase
Probab=95.97 E-value=0.018 Score=43.70 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=29.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILK 106 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~ 106 (157)
..+.|++.++|+.|.+ +.+++|+|+.+...+..++.
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 3466788899999985 57999999999998887764
No 159
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.88 E-value=0.024 Score=39.96 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.++|+.|+++|++++++||.+...+..+++.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 347888899999999999999999999999999975
No 160
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.79 E-value=0.021 Score=47.68 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
-+++||+.+.|+.|+++|++++++|+.+....+.+.+.+|+..+
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~ 610 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFR 610 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCee
Confidence 57999999999999999999999999999999999999999643
No 161
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.021 Score=47.29 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
-+++|++.+.+++|+++|+++.++|+-++...+.+.+.+|+++++..+.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell 584 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL 584 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC
Confidence 6799999999999999999999999999999999999999986655544
No 162
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.78 E-value=0.02 Score=48.70 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
-+++||+.+.++.|++.|+++.++|+.+...+..+.+..|+...++.+++
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~ 576 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVS 576 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeE
Confidence 37899999999999999999999999999999999999999876655543
No 163
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=95.70 E-value=0.022 Score=46.93 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
-+++||+.+.+++|++.|+++.++|+.+........+.+|+.++|.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a 490 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIA 490 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEc
Confidence 5799999999999999999999999999999999999999976543
No 164
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.65 E-value=0.026 Score=46.44 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=43.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchh
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEI 117 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i 117 (157)
-+++|++.+.+++|++.|+++.++|+-+......+.+..|+.++|..+
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~ 487 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC 487 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC
Confidence 579999999999999999999999999999999999999998655443
No 165
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=95.62 E-value=0.027 Score=46.43 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=42.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
-++.||+.+.+++|++.|+++.++|+-+....+.+.+..|++++|.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A 489 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLA 489 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEc
Confidence 5689999999999999999999999999999999999999976543
No 166
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.59 E-value=0.033 Score=34.51 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.4
Q ss_pred EEEeCCCCcccCC
Q 044369 6 VVFDFDKTIIDCD 18 (157)
Q Consensus 6 viFD~DgTL~d~~ 18 (157)
++||+||||++..
T Consensus 1 ~l~D~dGvl~~g~ 13 (101)
T PF13344_consen 1 FLFDLDGVLYNGN 13 (101)
T ss_dssp EEEESTTTSEETT
T ss_pred CEEeCccEeEeCC
Confidence 6899999999864
No 167
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.46 E-value=0.043 Score=39.56 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+.++|++|+++|++++++|+.+...+...++.+++.
T Consensus 20 ~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 20 STKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 4457888999999999999999999999999988875
No 168
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=95.13 E-value=0.056 Score=38.03 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..++|++|++.|++++++|+.+...+..+++.+++.
T Consensus 20 ~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 20 ALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred HHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 346778888899999999999999999888888854
No 169
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.88 E-value=0.099 Score=37.76 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=20.8
Q ss_pred HcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 85 DLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 85 ~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
+.++.++++|+.+...+..+++..++. ..|.+++
T Consensus 33 ~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd~~I~ 66 (247)
T PF05116_consen 33 RPEILFVYVTGRSLESVLRLLREYNLP-QPDYIIT 66 (247)
T ss_dssp CCGEEEEEE-SS-HHHHHHHHHHCT-E-E-SEEEE
T ss_pred CCCceEEEECCCCHHHHHHHHHhCCCC-CCCEEEe
Confidence 445777777777777777777777763 3566666
No 170
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.85 E-value=0.015 Score=39.58 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=14.2
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
+|+++||+||||.|.
T Consensus 7 i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 7 IKLVILDVDGVMTDG 21 (169)
T ss_pred CeEEEEeCceeeECC
Confidence 689999999999998
No 171
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.61 E-value=0.1 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChH---HHHHHHHH-CCcccccchhee
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLF---FIETILKH-HGIWELFSEINT 119 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~---~~~~~~~~-~~l~~~fd~i~~ 119 (157)
.++|++.++|+.++++|+++.++||++.. .....+.. +|+.-..+.+++
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iit 66 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIIT 66 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeee
Confidence 45789999999999999999999987633 33344444 777655666665
No 172
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.56 E-value=0.094 Score=44.23 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCChhHHHHHHHHHHc-CCcEEEEeCCChHHHHHHHHHCC
Q 044369 70 APIHPSIISAVKAAHDL-GCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
..+.|++.++|+.|.+. +-.++|+|+.+...++.++...+
T Consensus 531 a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 531 LGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 45667888999999775 67899999999999988886543
No 173
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=94.32 E-value=0.096 Score=43.93 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
-+++|++.+.++.|++.|+++.++|+-+......+.+..|+.+
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999999999999964
No 174
>PLN02423 phosphomannomutase
Probab=94.24 E-value=0.033 Score=40.18 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.3
Q ss_pred ceEEE-EeCCCCcccCC
Q 044369 3 DIVVV-FDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~vi-FD~DgTL~d~~ 18 (157)
.++++ ||+||||++.+
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 34455 99999999874
No 175
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.092 Score=38.77 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=35.4
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH---HHCCcc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL---KHHGIW 111 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~---~~~~l~ 111 (157)
.-.+.||+.+++..|++.|-++.++||++....+..+ +++|+.
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 4678999999999999999999999999877655544 455665
No 176
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.03 E-value=0.023 Score=39.99 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=11.4
Q ss_pred EEEeCCCCcccCC
Q 044369 6 VVFDFDKTIIDCD 18 (157)
Q Consensus 6 viFD~DgTL~d~~ 18 (157)
|+||+||||++.+
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999874
No 177
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.79 E-value=0.17 Score=43.33 Aligned_cols=41 Identities=10% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHc-CCcEEEEeCCChHHHHHHHHHCCc
Q 044369 70 APIHPSIISAVKAAHDL-GCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
..+.|++.++|+.|.+. +..++|+|+.+...++.++...++
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L 662 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM 662 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc
Confidence 45778899999999875 678999999999999988876543
No 178
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.065 Score=40.47 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=42.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC---Ccccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH---GIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~---~l~~~fd~i~~ 119 (157)
+.-.|....+|+.|++.|.++.++||++..++..-++.+ ...++||.|+.
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIv 291 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIV 291 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEE
Confidence 556788999999999999999999999999888776665 35578998775
No 179
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=93.34 E-value=0.18 Score=43.00 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-+++|++.+.++.|++.|+++.++|+-+......+.+..|+.
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 468999999999999999999999999999999999999996
No 180
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=93.22 E-value=0.2 Score=43.05 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
-+++|++.+.++.|++.|+++.++|+.+...+....+..|+..
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 5689999999999999999999999999999999999999863
No 181
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=93.17 E-value=0.21 Score=33.46 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=40.6
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc-eeccCCcEEEeecc
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS-FVDEEGRLKIFPHH 136 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~-~~~~~~~~~~~p~~ 136 (157)
-++.|.+.|++++|+|+.....++..++.+|+..+|..+---.. +.+-..+++..|++
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK~~a~~~L~~~~~l~~e~ 101 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISDKLAAFEELLKKLNLDPEE 101 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechHhHHHHHHHHHHHhCCCHHH
Confidence 35666777999999999999999999999999876655442111 33334444554444
No 182
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=93.08 E-value=0.19 Score=43.06 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.|++.+.++.|++.|+++.++|+-+......+.+..|+.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 568999999999999999999999999999999999999995
No 183
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=93.03 E-value=0.19 Score=43.01 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=39.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-+++|++.+.++.|+++|+++.++|+-+...+..+.+..|+.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 468999999999999999999999999999999999999996
No 184
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=92.99 E-value=0.06 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=14.6
Q ss_pred CceEEEEeCCCCcccC
Q 044369 2 ADIVVVFDFDKTIIDC 17 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~ 17 (157)
++|.+|||.||||+|.
T Consensus 7 ~IkLli~DVDGvLTDG 22 (170)
T COG1778 7 NIKLLILDVDGVLTDG 22 (170)
T ss_pred hceEEEEeccceeecC
Confidence 3789999999999997
No 185
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.96 E-value=0.0078 Score=43.71 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
.++++.+.++.|++.+++++++||.+...........|+..+|+.+.+
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~ 168 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEY 168 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHH
Confidence 468899999999998999999999988877666677788888887664
No 186
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.94 E-value=0.048 Score=38.81 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=11.4
Q ss_pred EEEEeCCCCcccC
Q 044369 5 VVVFDFDKTIIDC 17 (157)
Q Consensus 5 ~viFD~DgTL~d~ 17 (157)
.|+||+||||++.
T Consensus 1 li~~DlDGTLl~~ 13 (225)
T TIGR02461 1 VIFTDLDGTLLPP 13 (225)
T ss_pred CEEEeCCCCCcCC
Confidence 3789999999985
No 187
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.90 E-value=0.051 Score=39.21 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.0
Q ss_pred EEEEeCCCCcccCC
Q 044369 5 VVVFDFDKTIIDCD 18 (157)
Q Consensus 5 ~viFD~DgTL~d~~ 18 (157)
+++||+||||++.+
T Consensus 1 li~~DlDGTLl~~~ 14 (256)
T TIGR00099 1 LIFIDLDGTLLNDD 14 (256)
T ss_pred CEEEeCCCCCCCCC
Confidence 37899999999874
No 188
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.49 Score=32.13 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=33.9
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc-cccchh
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW-ELFSEI 117 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~-~~fd~i 117 (157)
+++.+..++...|..+++. .+++.+|+.-....+..-..+.+. -++|.+
T Consensus 69 ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l 118 (194)
T COG5663 69 KEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHL 118 (194)
T ss_pred HHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhh
Confidence 4566778899999999886 889999998887665544443333 234543
No 189
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=92.55 E-value=0.27 Score=31.68 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=37.2
Q ss_pred hhCCCChhHHHHHHHHHHcCCcEEEEeCCChH-HHHHHHHHCCcc
Q 044369 68 KRAPIHPSIISAVKAAHDLGCDLKIVSDANLF-FIETILKHHGIW 111 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~-~~~~~~~~~~l~ 111 (157)
..+..++++.-.|..|+++|+.+.++|++... .+...++.+.+.
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVK 85 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccC
Confidence 34778999999999999999999999999776 667778877654
No 190
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.51 E-value=0.074 Score=37.43 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=11.6
Q ss_pred EEEeCCCCcccCC
Q 044369 6 VVFDFDKTIIDCD 18 (157)
Q Consensus 6 viFD~DgTL~d~~ 18 (157)
|++|+||||++.+
T Consensus 2 i~~DlDGTLL~~~ 14 (221)
T TIGR02463 2 VFSDLDGTLLDSH 14 (221)
T ss_pred EEEeCCCCCcCCC
Confidence 7899999999874
No 191
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=92.46 E-value=0.096 Score=40.70 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCcccCCchHHHHHhhch
Q 044369 3 DIVVVFDFDKTIIDCDSDNWVVDELHA 29 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~~~~~~~~g~ 29 (157)
.+.||+|+||||+.++.+-.+...+|.
T Consensus 375 ~kiVVsDiDGTITkSD~~Ghv~~miGk 401 (580)
T COG5083 375 KKIVVSDIDGTITKSDALGHVKQMIGK 401 (580)
T ss_pred CcEEEEecCCcEEehhhHHHHHHHhcc
Confidence 478999999999999877666555554
No 192
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=92.43 E-value=0.29 Score=42.20 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.|++.+.++.|+++|+++.++|+-+...+..+.+..|+.
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~ 619 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL 619 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 478999999999999999999999999999999999999986
No 193
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=92.31 E-value=0.31 Score=42.53 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=40.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.|++.+.++.|++.|+++.++|+.+...+..+.+..|+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999995
No 194
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=92.16 E-value=0.034 Score=39.92 Aligned_cols=44 Identities=7% Similarity=-0.168 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchh
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEI 117 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i 117 (157)
+|++.++++.|+++|+++ |+||.+..+........+...+|..+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i 183 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELI 183 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHH
Confidence 689999999998899997 88999988777677777877777765
No 195
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=92.03 E-value=0.32 Score=42.15 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=39.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.|++.+.++.++++|+++.++|+.+...+..+.+..|+.
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 568999999999999999999999999999999999999985
No 196
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.02 E-value=0.49 Score=38.66 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCcccCCchHHHHHhhchH
Q 044369 3 DIVVVFDFDKTIIDCDSDNWVVDELHAT 30 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~~~~~~~~~g~~ 30 (157)
-+.||=|+||||+.++.+-+++-.+|..
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp~iGkD 557 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLPMIGKD 557 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhhhhcCc
Confidence 4678999999999998877776666653
No 197
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.34 Score=40.95 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.|++...++.||+.|++++++|+-+...++...+..|++
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~ 763 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID 763 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc
Confidence 678999999999999999999999999999999999999955
No 198
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=91.78 E-value=0.11 Score=37.32 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=13.0
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
..+++||+||||+..
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 568999999999975
No 199
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.53 E-value=0.54 Score=33.19 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=38.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH---HHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE---TILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~---~~~~~~~l~~~fd~i~~ 119 (157)
..+.||+.|.|+.|+.++.++-.+||.+..+-+ ..+.++|++--=+.|++
T Consensus 22 ~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~t 74 (262)
T KOG3040|consen 22 DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFT 74 (262)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcC
Confidence 347899999999999999999999999777544 44556677644445665
No 200
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=91.44 E-value=0.42 Score=41.73 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=40.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
-++.|++.+.++.|+++|+++.++|+.+...+..+.+..|+..
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~ 697 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVN 697 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 6799999999999999999999999999999999999999853
No 201
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=91.02 E-value=0.44 Score=34.27 Aligned_cols=36 Identities=6% Similarity=0.005 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..++++.++++|++++++|+.+...++.+.+.+++.
T Consensus 26 ~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 26 LNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 346777788888889999999988888888877764
No 202
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=90.74 E-value=0.65 Score=37.04 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=38.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
-++.|++.+.+++|++.|+++.++|+.+........+.+|+
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 57999999999999999999999999999999999999986
No 203
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.49 E-value=0.62 Score=40.13 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=41.6
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
.-+|.|++.+.++.|+++|+++.++|+-...-+..+.+..|+..-
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~ 589 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAE 589 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999999999999999999997643
No 204
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=90.30 E-value=0.13 Score=36.86 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.7
Q ss_pred EEEeCCCCcccCC
Q 044369 6 VVFDFDKTIIDCD 18 (157)
Q Consensus 6 viFD~DgTL~d~~ 18 (157)
++||+||||++.+
T Consensus 1 ~lfD~DGvL~~~~ 13 (236)
T TIGR01460 1 FLFDIDGVLWLGH 13 (236)
T ss_pred CEEeCcCccCcCC
Confidence 5899999999985
No 205
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=90.17 E-value=0.026 Score=41.43 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHH-HHHHHHCCcccccchhe
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFI-ETILKHHGIWELFSEIN 118 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~-~~~~~~~~l~~~fd~i~ 118 (157)
-++++.++++.|+++|+ ++|+||.+.... ...+...++..+|+.+.
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~ 190 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIE 190 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHH
Confidence 47899999999998887 899999887533 22233456666777654
No 206
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=89.88 E-value=0.36 Score=35.03 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEeCCCCcccCCchHHHHHhhchHHH
Q 044369 5 VVVFDFDKTIIDCDSDNWVVDELHATEL 32 (157)
Q Consensus 5 ~viFD~DgTL~d~~~~~~~~~~~g~~~~ 32 (157)
-|.||.|+||.+.++ ..+.++-|+..+
T Consensus 123 RIAFDgDaVLfsDes-E~vy~~~GL~~F 149 (264)
T PF06189_consen 123 RIAFDGDAVLFSDES-ERVYQEQGLEAF 149 (264)
T ss_pred EEEEcCCeEeecCcc-hHhHHhccHHHH
Confidence 489999999999887 455555576543
No 207
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=89.65 E-value=0.73 Score=34.22 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.1
Q ss_pred hCCCChhHHHHHHHHHHcC-CcEEEEeCCChHHHHHHH
Q 044369 69 RAPIHPSIISAVKAAHDLG-CDLKIVSDANLFFIETIL 105 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g-~~~~ivSn~~~~~~~~~~ 105 (157)
+..++|..-++++.+|+.| .+++|+||++...+...+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 4778999999999999999 799999999994444433
No 208
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=89.61 E-value=0.17 Score=37.09 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCcccCC
Q 044369 3 DIVVVFDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~ 18 (157)
+++++||+||||++..
T Consensus 8 y~~~l~DlDGvl~~G~ 23 (269)
T COG0647 8 YDGFLFDLDGVLYRGN 23 (269)
T ss_pred cCEEEEcCcCceEeCC
Confidence 7899999999999874
No 209
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.37 E-value=1.7 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
+.+++.+|++.|++++.+|+.+...+..+-+.+|+..
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 3478889999999999999999999999999999874
No 210
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=89.20 E-value=0.17 Score=36.04 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.8
Q ss_pred EEEEeCCCCcccCC
Q 044369 5 VVVFDFDKTIIDCD 18 (157)
Q Consensus 5 ~viFD~DgTL~d~~ 18 (157)
+|++|+||||++.+
T Consensus 1 li~~DlDgTLl~~~ 14 (236)
T TIGR02471 1 LIITDLDNTLLGDD 14 (236)
T ss_pred CeEEeccccccCCH
Confidence 47889999999863
No 211
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=88.99 E-value=0.64 Score=40.63 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=39.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
-++.||+.+.++.|++.|+++.++|+-....+..+.+..|+-.
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~ 672 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLS 672 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCC
Confidence 6799999999999999999999999999998888888888753
No 212
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=88.97 E-value=0.93 Score=31.21 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHH----HHHHHCCccc
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIE----TILKHHGIWE 112 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~----~~~~~~~l~~ 112 (157)
.|-+-+.+++....++|-.++.+|+.++-.++ .+.+.+.+..
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~ 159 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITN 159 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCC
Confidence 34455678899999999999999998776443 3344455543
No 213
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=88.94 E-value=0.89 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+|+.+.+.++.|++. ++++|+|+-..-++...++-.|+.
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~ 69 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP 69 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc
Confidence 67899999999999999 999999999999999999998876
No 214
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=88.33 E-value=1.2 Score=37.64 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
-+|+|++.+.++.+++.|+++.++|+-+..-+..+.++.|+.+.-+
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e 628 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE 628 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc
Confidence 6799999999999999999999999999999999999999775544
No 215
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=87.96 E-value=1.2 Score=35.75 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
-..-||.+|.+.+|++.|++.+.+|+-+.--...+.+..|++++.
T Consensus 446 DivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfi 490 (681)
T COG2216 446 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFI 490 (681)
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhh
Confidence 447899999999999999999999999999999999999998653
No 216
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=87.65 E-value=0.36 Score=34.70 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.2
Q ss_pred eEEEEeCCCCccc
Q 044369 4 IVVVFDFDKTIID 16 (157)
Q Consensus 4 k~viFD~DgTL~d 16 (157)
.+|+.|+||||++
T Consensus 2 ~li~tDlDGTLl~ 14 (249)
T TIGR01485 2 LLLVSDLDNTLVD 14 (249)
T ss_pred eEEEEcCCCcCcC
Confidence 3678899999997
No 217
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=87.33 E-value=1.8 Score=27.13 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeCCc--eeccCC
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTNSS--FVDEEG 128 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~~~--~~~~~~ 128 (157)
+....|++.|+++++|+-++...++.+.+..++. ++ |+++|+ +..+.+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p--~~-ly~D~~~~lY~~lg 53 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFP--FP-LYVDPERKLYKALG 53 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCC--Cc-EEEeCcHHHHHHhC
Confidence 4567888899999999999997688888776654 44 777666 444444
No 218
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=86.71 E-value=0.44 Score=34.88 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=13.5
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
..+++||+||||.+.
T Consensus 18 ~~~~~lDyDGTl~~i 32 (266)
T COG1877 18 KRLLFLDYDGTLTEI 32 (266)
T ss_pred ceEEEEecccccccc
Confidence 578999999999987
No 219
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=86.70 E-value=1.4 Score=31.28 Aligned_cols=40 Identities=3% Similarity=-0.066 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
++++ ++++|++++++|+.+...+..++..+++. ..+.+++
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~-~~~~~I~ 61 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP-SPDVLIA 61 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC-CCCEEEE
Confidence 6666 57889999999999999999999999875 3344554
No 220
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=86.66 E-value=1.4 Score=31.48 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC-------cccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG-------IWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~-------l~~~fd~i~~ 119 (157)
.+.++++.+.++..++.|++++|-|+++...+..++.+.+ +..|||.-++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~iG 178 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTTIG 178 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcccc
Confidence 6789999999999999999999999999998888877653 4457777666
No 221
>PLN03017 trehalose-phosphatase
Probab=85.81 E-value=0.46 Score=36.40 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=11.0
Q ss_pred ceEEEEeCCCCcc
Q 044369 3 DIVVVFDFDKTII 15 (157)
Q Consensus 3 ~k~viFD~DgTL~ 15 (157)
..++++|+||||+
T Consensus 111 ~~llflD~DGTL~ 123 (366)
T PLN03017 111 QIVMFLDYDGTLS 123 (366)
T ss_pred CeEEEEecCCcCc
Confidence 3567889999999
No 222
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=85.43 E-value=0.59 Score=30.86 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=13.7
Q ss_pred ceEEEEeCCCCcccCC
Q 044369 3 DIVVVFDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~ 18 (157)
.+.+++|+||||+++.
T Consensus 2 k~~lvldld~tl~~~~ 17 (148)
T smart00577 2 KKTLVLDLDETLVHST 17 (148)
T ss_pred CcEEEEeCCCCeECCC
Confidence 4679999999999973
No 223
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=85.10 E-value=0.58 Score=31.50 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=13.3
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999884
No 224
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=84.96 E-value=0.65 Score=34.21 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=13.9
Q ss_pred ceEEEEeCCCCcccCCc
Q 044369 3 DIVVVFDFDKTIIDCDS 19 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~ 19 (157)
...|+||+|.||+..+.
T Consensus 122 phVIVfDlD~TLItd~~ 138 (297)
T PF05152_consen 122 PHVIVFDLDSTLITDEG 138 (297)
T ss_pred CcEEEEECCCcccccCC
Confidence 45799999999997743
No 225
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=84.86 E-value=1.7 Score=35.68 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc-cccc-hhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW-ELFS-EINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~-~~fd-~i~~ 119 (157)
..++|++.++|+++.+. +.+.|.|-+++.++..+.+-+.-. .||. .|++
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIis 250 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIIS 250 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEE
Confidence 67899999999999987 999999999999999998877544 4554 3766
No 226
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=84.86 E-value=0.71 Score=30.95 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCcccCCc
Q 044369 3 DIVVVFDFDKTIIDCDS 19 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~ 19 (157)
...+++|+|.||+.+..
T Consensus 6 kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTK 22 (156)
T ss_pred ceEEEEeCCCCcccccc
Confidence 56899999999999843
No 227
>PLN03190 aminophospholipid translocase; Provisional
Probab=84.75 E-value=2.1 Score=38.04 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=37.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.+|+.+.++.|+++|+++.++|+-....+..+....++-
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll 766 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLL 766 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCC
Confidence 679999999999999999999999999988777777766664
No 228
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=84.71 E-value=1.4 Score=31.21 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
+.++|+.|++. +.++|||++.-.-+..=+....+...||++++
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~ 43 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFP 43 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEE
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeec
Confidence 46899999986 99999999987744433322345567888886
No 229
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=84.18 E-value=3 Score=31.49 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred eEEEEeCCCCcccCCc----hHHHHHhhchH----H-HHHhhcCCCChHH-HHHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 044369 4 IVVVFDFDKTIIDCDS----DNWVVDELHAT----E-LFNQLLPTMPWNS-LMGRMMEELHAQGKTIEDIVEVLKRAPIH 73 (157)
Q Consensus 4 k~viFD~DgTL~d~~~----~~~~~~~~g~~----~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (157)
.+++||+||+|+.... ....++.+.-. . .+--+....+..+ ..........+...+.+++.+....
T Consensus 36 fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP---- 111 (389)
T KOG1618|consen 36 FGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSP---- 111 (389)
T ss_pred eeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcCh----
Confidence 5799999999998742 12333322111 0 0111111112222 2333333334445666666554321
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
++.|.+..++.+++.+ +...+..++.+|+.+
T Consensus 112 ------~r~l~~~~~k~vLv~G--~~~vr~vAegyGFk~ 142 (389)
T KOG1618|consen 112 ------FRLLVEYHYKRVLVVG--QGSVREVAEGYGFKN 142 (389)
T ss_pred ------HHHHhhhhhceEEEec--CCcHHHHhhccCccc
Confidence 2333333466667766 334677777777664
No 230
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=84.09 E-value=1.2 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
.|+.+.|++.|++.+-+|.+++......+..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 47888999999999999999999887777653
No 231
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=83.86 E-value=0.68 Score=35.56 Aligned_cols=17 Identities=41% Similarity=0.839 Sum_probs=14.5
Q ss_pred ceEEEEeCCCCcccCCc
Q 044369 3 DIVVVFDFDKTIIDCDS 19 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~ 19 (157)
-|.+.||+|||||++.+
T Consensus 75 ~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 75 SKIIMFDYDGTLIDTKS 91 (422)
T ss_pred cceEEEecCCceeecCC
Confidence 46799999999999953
No 232
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=83.21 E-value=2.9 Score=31.58 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.-+.|...++++.++++|+.+.|.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4557899999999999999999999999764
No 233
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=80.00 E-value=6.3 Score=26.96 Aligned_cols=31 Identities=10% Similarity=0.293 Sum_probs=26.3
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.-+.|...++++.+++.|+.+.+.||+...
T Consensus 72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 3455678999999999999999999999754
No 234
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=79.88 E-value=2.3 Score=30.59 Aligned_cols=30 Identities=3% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
.-+.++..++++.+++.|+++.|-||++..
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 334578999999999999999999999874
No 235
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=79.44 E-value=5.5 Score=29.72 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=13.6
Q ss_pred ceEEEEeCCCCcccCC
Q 044369 3 DIVVVFDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~ 18 (157)
...++||.||+|...+
T Consensus 22 ~DtfifDcDGVlW~g~ 37 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGE 37 (306)
T ss_pred cCEEEEcCCcceeecC
Confidence 5689999999998763
No 236
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=79.00 E-value=22 Score=25.97 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
..++|+.|++.|..+.++|-.... +..+||.|++
T Consensus 178 i~~lL~~l~~eg~tIl~vtHDL~~----------v~~~~D~vi~ 211 (254)
T COG1121 178 IYDLLKELRQEGKTVLMVTHDLGL----------VMAYFDRVIC 211 (254)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcHH----------hHhhCCEEEE
Confidence 447899999999999999987664 4556677664
No 237
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=78.50 E-value=1.1 Score=31.99 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=7.4
Q ss_pred EEeCCCCcccCC
Q 044369 7 VFDFDKTIIDCD 18 (157)
Q Consensus 7 iFD~DgTL~d~~ 18 (157)
+||+||||.+..
T Consensus 1 ~lDyDGTL~p~~ 12 (235)
T PF02358_consen 1 FLDYDGTLAPIV 12 (235)
T ss_dssp EEE-TTTSS---
T ss_pred CcccCCccCCCC
Confidence 689999999873
No 238
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=77.81 E-value=1.6 Score=31.15 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
...|+-|+||||++.
T Consensus 7 ~~lIFtDlD~TLl~~ 21 (274)
T COG3769 7 PLLIFTDLDGTLLPH 21 (274)
T ss_pred ceEEEEcccCcccCC
Confidence 466777999999993
No 239
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=77.37 E-value=4.9 Score=25.31 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
--.+.+.+.++.++++|.+++.+|+.+...+..
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 345678899999999999999999987754443
No 240
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=77.23 E-value=1.7 Score=30.02 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCcccCCc
Q 044369 3 DIVVVFDFDKTIIDCDS 19 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~~ 19 (157)
.+++++|-||||.....
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 68999999999987644
No 241
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=76.05 E-value=8.8 Score=27.17 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=27.6
Q ss_pred CCCChh-HHHHHHHHHHcCCcEEEEeCCChH--HHHHHHH
Q 044369 70 APIHPS-IISAVKAAHDLGCDLKIVSDANLF--FIETILK 106 (157)
Q Consensus 70 ~~~~pg-~~e~l~~L~~~g~~~~ivSn~~~~--~~~~~~~ 106 (157)
.-+.++ +.++++.+++.|+.+++.||+... .+..++.
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~ 88 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK 88 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 445666 689999999999999999999543 4444443
No 242
>PLN02382 probable sucrose-phosphatase
Probab=75.89 E-value=2.1 Score=33.49 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
.-.|+-||||||++.
T Consensus 9 ~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 9 RLMIVSDLDHTMVDH 23 (413)
T ss_pred CEEEEEcCCCcCcCC
Confidence 345677999999986
No 243
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.66 E-value=11 Score=23.93 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHcCC-cE-EEEeCCChHHHHHHHHHCCcccccch
Q 044369 72 IHPSIISAVKAAHDLGC-DL-KIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~-~~-~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
..+.+.++++.|+++|. .+ .++-++........+...|++.+|+.
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 45677888999988855 32 34443333334556677888766553
No 244
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.15 E-value=5.2 Score=25.29 Aligned_cols=34 Identities=3% Similarity=0.035 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
..-.+.+.++++.++++|.+++.+|+.+...+..
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 4456789999999999999999999987764444
No 245
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=73.21 E-value=13 Score=24.72 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
..+.+.++++.+++.|+++.+-||....
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~ 100 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPK 100 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCH
Confidence 3467889999999999999999997653
No 246
>PLN03017 trehalose-phosphatase
Probab=73.05 E-value=7.6 Score=29.93 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
.+.|++.+.|++|. +|++++|+|+.+...+..+.
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 57789999999999 67999999999999888774
No 247
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=72.30 E-value=8.1 Score=27.49 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=15.1
Q ss_pred CceEEEEeCCCCcccCC
Q 044369 2 ADIVVVFDFDKTIIDCD 18 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~~ 18 (157)
+++.++.|+-|||.+.+
T Consensus 6 ~v~gvLlDlSGtLh~e~ 22 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIED 22 (262)
T ss_pred ccceEEEeccceEeccc
Confidence 47899999999999875
No 248
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=71.79 E-value=8 Score=28.43 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=34.3
Q ss_pred hCCCChhHHHHHHHHHHc-CCcEEEEeCCChHHHHHHHHHCCc
Q 044369 69 RAPIHPSIISAVKAAHDL-GCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
...+.+++.++|+.|.++ +..++|+|+.+...++.++.-.++
T Consensus 38 ~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 38 AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 467889999999999987 234999999999988888774444
No 249
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=71.52 E-value=9.1 Score=32.88 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
-+.+||+.+.++.++..|+.+=.+|+.+-.-++.+....||...
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~ 689 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTP 689 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccC
Confidence 67899999999999999999999999999999999999998744
No 250
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=71.18 E-value=27 Score=31.25 Aligned_cols=42 Identities=5% Similarity=0.025 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-++.+|+.|.++.|+++|+|++++|+--.+-+-...-..++.
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll 691 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLL 691 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCC
Confidence 678999999999999999999999998777555554444443
No 251
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=70.72 E-value=12 Score=28.71 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.9
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
+.-+.|+..++++.+++.|+.+.+.||+..
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~l 101 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVG 101 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCcc
Confidence 455679999999999999999999999963
No 252
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=70.62 E-value=8.4 Score=24.33 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
.--.+.+.+.++.++++|.+++.+|+.....+.
T Consensus 57 SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 57 SGNTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CCCChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 334578889999999999999999998776443
No 253
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=70.02 E-value=15 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
.--.+.+.+.++.++++|.+++.+|+... +....++.+
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~ 90 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHG 90 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcC
Confidence 33456788999999999999999997542 555555444
No 254
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=69.52 E-value=13 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.5
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCC
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~ 97 (157)
+.-+.|+..++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 45567899999999999999999999996
No 255
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=69.51 E-value=6.4 Score=26.32 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..++.++=+.|++.|+++.+..+.+...+..+++.+++.
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC
Confidence 445556667777778888888888888888888877765
No 256
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=69.42 E-value=11 Score=23.61 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
..-.....+.++.++++|.+++.+|+.....+...
T Consensus 63 sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred cccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 44567888999999999999999998777655444
No 257
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=69.29 E-value=12 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
+...++...+++.|+.++.+|..+...+..+.+..++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 3445677777888899999999988888888887763
No 258
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=67.58 E-value=9.8 Score=25.77 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
..-.+.+.++++.++++|.+++.+|+.+...+...
T Consensus 82 sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 82 SGETESLVTVAKKAKEIGATVAAITTNPESTLGKL 116 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 33567888999999999999999999877655443
No 259
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=67.20 E-value=6.7 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=27.0
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.-+.|...++++.++++|..+.++||+..-
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 4557799999999999999999999999753
No 260
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=66.13 E-value=22 Score=21.28 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHc--CCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 74 PSIISAVKAAHDL--GCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 74 pg~~e~l~~L~~~--g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
-...++++.|++. +.++.++|+..........-+.|...|
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDY 97 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEE
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEE
Confidence 3566888888875 488899998777655555557787654
No 261
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=64.66 E-value=18 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEE-eCCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIV-SDAN 97 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~iv-Sn~~ 97 (157)
.-.+|.+.++|+.+++.|++++|. ||+.
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 446799999999999999999995 9965
No 262
>PLN02423 phosphomannomutase
Probab=64.59 E-value=15 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
..+.|...++|++|+++ ++++++|+.....+...+..
T Consensus 23 ~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~~ 59 (245)
T PLN02423 23 KEATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLGK 59 (245)
T ss_pred CcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhcc
Confidence 35678899999999976 99999999966655544443
No 263
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=64.38 E-value=4.6 Score=29.60 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
..-+|++.++|....+. +.+.+.|++...+...+++.+.
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD 168 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILD 168 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHcc
Confidence 44566777777766664 6667777777777766666654
No 264
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=63.78 E-value=11 Score=25.49 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFF 100 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~ 100 (157)
..-.+.+.++++.++++|.+++.+|+.+...
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4456899999999999999999999986653
No 265
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=63.70 E-value=12 Score=26.59 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=23.3
Q ss_pred hCCCChhHHHHHHHHHHc-CCcEEEEeCCChHHHHHHH
Q 044369 69 RAPIHPSIISAVKAAHDL-GCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~~~~~~~ 105 (157)
...+.|++.++|+.|.+. +..++|+|+.+....+.+.
T Consensus 17 ~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~ 54 (235)
T PF02358_consen 17 AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFG 54 (235)
T ss_dssp G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-
T ss_pred ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhc
Confidence 356789999999999886 3359999999998754443
No 266
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=63.04 E-value=14 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
.+.+.++++.++++|.+++++|+.....+.
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 466888899999999999999998765333
No 267
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.55 E-value=29 Score=22.54 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHcCC-cE-EEEeCCChHHHHHHHHHCCcccccc
Q 044369 73 HPSIISAVKAAHDLGC-DL-KIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~-~~-~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
.+.+.++++.|+++|. .+ +++-+.....-...++..|++.+|.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC
Confidence 4566778888888765 33 3443333333455578888876654
No 268
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=62.08 E-value=21 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCChhH-HHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSI-ISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~-~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
.-+.++. .++++.+++.|+++.+.||+..
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 4456775 6999999999999999999954
No 269
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=61.99 E-value=0.91 Score=23.45 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
|+.+.|++.|...+-+|.+++......+..
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~k 39 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAK 39 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHH
Confidence 456778888999999999999977766654
No 270
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=61.97 E-value=4.2 Score=29.55 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.7
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
.+..|||||.|||=.
T Consensus 2 e~VfvWDlDETlIif 16 (274)
T TIGR01658 2 ENVYVWDMDETLILL 16 (274)
T ss_pred ceeEEEeccchHHHH
Confidence 367899999999865
No 271
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=61.89 E-value=27 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCCChh-HHHHHHHHHHcCCcEEEEeCCC----hHHHHHHHHH
Q 044369 70 APIHPS-IISAVKAAHDLGCDLKIVSDAN----LFFIETILKH 107 (157)
Q Consensus 70 ~~~~pg-~~e~l~~L~~~g~~~~ivSn~~----~~~~~~~~~~ 107 (157)
.-+.|+ ..++++.+++.|+++.+.||+. ...+..+++.
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 445677 4599999999999999999994 3344555543
No 272
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=60.72 E-value=14 Score=26.49 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.1
Q ss_pred CCCChhH-HHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSI-ISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~-~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
.-+.++. .++++.+++.|+++.+.||+..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4456774 5999999999999999999974
No 273
>PRK13937 phosphoheptose isomerase; Provisional
Probab=60.26 E-value=16 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=27.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
.--.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 116 sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 116 SGNSPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 3456889999999999999999999976654443
No 274
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=59.94 E-value=14 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
.--.+.+.+.++.++++|.+++.+|+.+...+.
T Consensus 89 sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 89 SGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 335678899999999999999999997665443
No 275
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=59.80 E-value=29 Score=30.09 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=39.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
.++.|++++.++.|.+.+++++.+|+-+.--+.++.+..|+-+
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~ 716 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVE 716 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeec
Confidence 7789999999999999999999999999988888888888764
No 276
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=58.26 E-value=17 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
++=+.|++.|+++.+..+.+...+..+++.+++
T Consensus 65 ~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~ 97 (429)
T TIGR02765 65 DLRTSLRKLGSDLLVRSGKPEDVLPELIKELGV 97 (429)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCC
Confidence 333344444444444444444444444444443
No 277
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=57.97 E-value=18 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=26.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
..-.+.+.++++.++++|.+++.+|+.....+.
T Consensus 85 sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 85 SGETSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 345678889999999999999999998776443
No 278
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=57.65 E-value=36 Score=21.91 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=7.4
Q ss_pred HHHHcCCcEEEEeCC
Q 044369 82 AAHDLGCDLKIVSDA 96 (157)
Q Consensus 82 ~L~~~g~~~~ivSn~ 96 (157)
++++.+++.-+++..
T Consensus 79 ~~~~~~~~~~~~~D~ 93 (149)
T cd03018 79 WAEENGLTFPLLSDF 93 (149)
T ss_pred HHHhcCCCceEecCC
Confidence 334445555555543
No 279
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=57.11 E-value=31 Score=20.92 Aligned_cols=35 Identities=9% Similarity=0.313 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
++.+.++++|.++.++.-.+ .+...++..|+.+.|
T Consensus 62 ~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCNVSP--AVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHcCCEEEEEeCCH--HHHHHHHHhCCceEE
Confidence 56677788898888665433 378888999988766
No 280
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=57.07 E-value=9.4 Score=29.58 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=12.9
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
+++|||+|.|||-..
T Consensus 198 RVFiWDlDEtiIifh 212 (468)
T KOG3107|consen 198 RVFIWDLDETIIIFH 212 (468)
T ss_pred eEEEeeccchHHHHH
Confidence 689999999998763
No 281
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=35 Score=23.12 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEE-EeCCChHHHHHHHHHCCcccc
Q 044369 71 PIHPSIISAVKAAHDLGCDLKI-VSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~i-vSn~~~~~~~~~~~~~~l~~~ 113 (157)
.=.||-.+-..+|+++|+..+| +|-+....+..+.+.+|...+
T Consensus 62 ~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~ 105 (171)
T KOG0541|consen 62 SHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDH 105 (171)
T ss_pred ccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccce
Confidence 3468999999999999998655 566666677888888876644
No 282
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=55.95 E-value=21 Score=24.68 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
-.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 46788899999999999999999986654333
No 283
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=55.51 E-value=19 Score=18.72 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCcc-cCCchHHHHHhhchH
Q 044369 3 DIVVVFDFDKTII-DCDSDNWVVDELHAT 30 (157)
Q Consensus 3 ~k~viFD~DgTL~-d~~~~~~~~~~~g~~ 30 (157)
....++|.+|+++ ...+..++.+.+|..
T Consensus 2 k~V~~~d~~~~~i~~f~S~~eAa~~lg~~ 30 (53)
T smart00497 2 KPVYVYDLDGNLIGEFSSIREAAKYLGIS 30 (53)
T ss_pred ccEEEEeCCCCEEEEecCHHHHHHHhCCC
Confidence 3467899999998 567888888888875
No 284
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=54.79 E-value=29 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred hCCCChhHHHHHHHHHHcC-CcEEEEeCCChHHHH
Q 044369 69 RAPIHPSIISAVKAAHDLG-CDLKIVSDANLFFIE 102 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g-~~~~ivSn~~~~~~~ 102 (157)
+..++||+-.+.+.|.+.| .++..+||++-....
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~ 228 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP 228 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH
Confidence 4779999999999999987 899999999877443
No 285
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=54.57 E-value=43 Score=21.18 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=9.6
Q ss_pred HHHHHHHHcCCcEEEEeCCC
Q 044369 78 SAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~ 97 (157)
++-+++++.+++.-+++...
T Consensus 70 ~~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd03017 70 SHAKFAEKYGLPFPLLSDPD 89 (140)
T ss_pred HHHHHHHHhCCCceEEECCc
Confidence 33344444455555555443
No 286
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=53.93 E-value=29 Score=24.61 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
....|.+.++|+.|++. +.++++-++.-..+..-+ -..+.+.||++++
T Consensus 27 ~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eql-G~~Vl~~fDY~F~ 74 (252)
T KOG3189|consen 27 QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQL-GDNVLEEFDYVFS 74 (252)
T ss_pred ccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHh-chhHHhhhccccc
Confidence 44566777888888776 778888776544333222 1235566787775
No 287
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=53.88 E-value=23 Score=28.24 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..++.++=+.|++.|+++.+..+.+...+..+++..++.
T Consensus 54 ~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred HHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC
Confidence 445555555666666666666666666666666665554
No 288
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=53.77 E-value=42 Score=26.38 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=38.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC---Ccccccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH---GIWELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~---~l~~~fd~i~~ 119 (157)
..+-...+|..+++.|-++.++||+...+....+.+. +...+||.++.
T Consensus 199 ~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~ 249 (424)
T KOG2469|consen 199 YDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVET 249 (424)
T ss_pred ecCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEE
Confidence 4445556899999999999999999988888777664 56688998775
No 289
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=53.36 E-value=22 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEe
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVS 94 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivS 94 (157)
.-.+.+.++++.++++|.+++.+|
T Consensus 58 g~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 58 GRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEe
Confidence 345789999999999999999998
No 290
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=53.27 E-value=20 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
.+..++.++++..+.+.+++||+...
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~~ 93 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKEF 93 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-E
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCeE
Confidence 47788888888889999999999764
No 291
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=52.92 E-value=39 Score=19.60 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+.++++.|+++ .+.. +|+++......++..+|+.
T Consensus 27 sa~~If~~L~k~-~~~~-l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 27 SAAEIFERLQKK-SPAA-LRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred cHHHHHHHHHHh-Cccc-cccCCHHHHHHHHHHcCCC
Confidence 467899999886 5554 7777888888899998986
No 292
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=52.80 E-value=22 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
...+|...++++..++.|+++++|+-+..
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s~~ 86 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQSLK 86 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcchhh
Confidence 36679999999999999999999988765
No 293
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.65 E-value=25 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=27.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
.--.+.+.+.++..+++|.+++.+|+.+...+..
T Consensus 123 SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 123 SGNSMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 3456788899999999999999999977654433
No 294
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=52.60 E-value=19 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
.+.+.++++.+++.|+++++.||+...
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 578889999999999999999999654
No 295
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=52.20 E-value=21 Score=25.75 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHH
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFI 101 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~ 101 (157)
.++|++..||+. |.++|||.+.+...
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQAa 212 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQAA 212 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHHH
Confidence 678999999975 99999999877633
No 296
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=51.59 E-value=46 Score=19.71 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 044369 74 PSIISAVKAA 83 (157)
Q Consensus 74 pg~~e~l~~L 83 (157)
+|+.++|+.+
T Consensus 31 D~t~~~l~~~ 40 (97)
T PF13704_consen 31 DGTREILRAL 40 (97)
T ss_pred ccHHHHHHhC
Confidence 3444444444
No 297
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.39 E-value=28 Score=27.60 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+..++=+.|++.|.++.|..+.+...+..+++..++.
T Consensus 77 ~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~ 115 (454)
T TIGR00591 77 LGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAA 115 (454)
T ss_pred HHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCC
Confidence 344445555666666666666666666666666665554
No 298
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=51.34 E-value=39 Score=20.39 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
.++.+.++++|.++.++.-.+ .+...++..|+...|+
T Consensus 65 ~~~~~~~~~~~~~~~l~~~~~--~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 65 LGRYKQVRRVGGQLVLVSVSP--RVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHHhcCCEEEEEeCCH--HHHHHHHHhChhheec
Confidence 355666777888776665433 3778888888886554
No 299
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=51.17 E-value=23 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEe
Q 044369 74 PSIISAVKAAHDLGCDLKIVS 94 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivS 94 (157)
+.+.++.++|.++|++++++|
T Consensus 95 ~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 95 EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 478899999999999999999
No 300
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=51.04 E-value=19 Score=25.41 Aligned_cols=28 Identities=11% Similarity=0.412 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
..|+..++++.|+++|+++.+=||++-.
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 3569999999999999999999999775
No 301
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=50.60 E-value=42 Score=19.62 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
.++.+.++++|..+.++.- +. .+...++..|+.++|.
T Consensus 60 ~~l~~~~~~~g~~v~i~~~-~~-~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 60 LGAYKRARAAGGRLVLVNV-SP-AVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHcCCeEEEEcC-CH-HHHHHHHHhCcceeee
Confidence 3566677777876555443 33 5888888888876543
No 302
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=50.30 E-value=6.5 Score=22.85 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=8.9
Q ss_pred EEEeCCCCcc
Q 044369 6 VVFDFDKTII 15 (157)
Q Consensus 6 viFD~DgTL~ 15 (157)
+=|||+|.|+
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 4599999999
No 303
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=49.88 E-value=33 Score=24.98 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
....|-+..|+..|..+.++|++--.+-...++.
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~ 68 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQ 68 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhhhHHHhhh
Confidence 3456889999999999999999977665555543
No 304
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=49.66 E-value=38 Score=23.15 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHhhCCCChhHHHHHHHHHHcCCcE
Q 044369 64 VEVLKRAPIHPSIISAVKAAHDLGCDL 90 (157)
Q Consensus 64 ~~~~~~~~~~pg~~e~l~~L~~~g~~~ 90 (157)
.+.+....-.|.+..++..|++.|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~L~~~Gvdv 172 (179)
T PF06757_consen 146 QQLYNALWASPEFQRLLNELRENGVDV 172 (179)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHcCCCH
Confidence 334445556777778888888777643
No 305
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=49.50 E-value=29 Score=26.37 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILK 106 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~ 106 (157)
--+++.+.++.++++|.+++.+||.....+....+
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad 138 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRADSPITSAAE 138 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCC
Confidence 45788999999999999999999987765554443
No 306
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=48.78 E-value=9.3 Score=30.35 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=11.3
Q ss_pred ceEEEEeCCCCcccCC
Q 044369 3 DIVVVFDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~ 18 (157)
+++|-||||-||+...
T Consensus 12 i~~iGFDmDyTLa~Y~ 27 (448)
T PF05761_consen 12 IDVIGFDMDYTLARYK 27 (448)
T ss_dssp --EEEE-TBTTTBEE-
T ss_pred CCEEEECcccchhhcC
Confidence 7899999999999874
No 307
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=48.63 E-value=84 Score=24.41 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHcCCcEEEE-eCCChHHHHHHHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIV-SDANLFFIETILKH 107 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~iv-Sn~~~~~~~~~~~~ 107 (157)
.||+.+++++|+++|+.+.+- ||.+.+.+...++.
T Consensus 176 ~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 176 EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 689999999999999988766 77666656555443
No 308
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.25 E-value=25 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
....++++.|++.|+++.+.|.+..
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHH
Confidence 4478899999999999988777654
No 309
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=48.11 E-value=23 Score=25.80 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
..-+|+..+++++|+++|+++.+..+...
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 34689999999999999999988877654
No 310
>PRK13936 phosphoheptose isomerase; Provisional
Probab=47.89 E-value=31 Score=23.96 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 45778899999999999999999976654444
No 311
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=47.26 E-value=37 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
+.+.+.+..+.+.|.+++|++++.. .+...++.+++...
T Consensus 20 ~~~~~~i~~l~~~g~~vvvV~g~g~-~~~~~~~~~~~~~~ 58 (242)
T PF00696_consen 20 RELADDIALLSQLGIKVVVVHGGGS-FTDELLEKYGIEPK 58 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH-HHHHHHHHCTHTTS
T ss_pred HHHHHHHHHHHhCCCeEEEEECChh-hcCchHHhccCCcc
Confidence 3455666677788999999988664 68888888876543
No 312
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=47.19 E-value=51 Score=22.74 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhhCCCChhHHH-----HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 58 KTIEDIVEVLKRAPIHPSIIS-----AVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 58 ~~~~~~~~~~~~~~~~pg~~e-----~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
...+.+.+...-....||+.. +...|..+|++.+++|.... ++..+.++|+.
T Consensus 82 v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~--lr~~~~rlgl~ 138 (179)
T PF12261_consen 82 VSRSQIVEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFTATRQ--LRNLFRRLGLP 138 (179)
T ss_pred cchhheeEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEeCCHH--HHHHHHHcCCC
Confidence 444444443332333444433 34466788999999999766 88999999987
No 313
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=46.99 E-value=8.1 Score=22.55 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=35.8
Q ss_pred HHHHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 64 VEVLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 64 ~~~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
+.......+-+.+.+-++.|-.. |+-+|++++....-+.++..+ ...||.|+
T Consensus 19 kkeveaGkLP~~va~gmeelY~N-Yk~AVl~Sg~p~A~eivlsnm--~~~~Drvl 70 (77)
T PF14829_consen 19 KKEVEAGKLPANVAAGMEELYQN-YKNAVLQSGDPNADEIVLSNM--AVALDRVL 70 (77)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHHH-HHHHHHHTT-TTHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHcCCCChhHHHHHHHHHHH-HHHHHHhCCCCCccHHHHHHH--HHHHHHHH
Confidence 33445567777777777777764 888889888888778887775 55677665
No 314
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=46.97 E-value=66 Score=21.29 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHcCC-cEEEEeCCChHHHHHHHHHCCc
Q 044369 75 SIISAVKAAHDLGC-DLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 75 g~~e~l~~L~~~g~-~~~ivSn~~~~~~~~~~~~~~l 110 (157)
+..+....+++.|. .++.+|..+......+.+..++
T Consensus 52 ~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 52 GYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 33455566666677 3777777776666666666665
No 315
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.74 E-value=51 Score=21.38 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCChhHHHHHHHHHHcCC-cE-EEEeCCCh------HHHHHHHHHCCcccccc
Q 044369 71 PIHPSIISAVKAAHDLGC-DL-KIVSDANL------FFIETILKHHGIWELFS 115 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~-~~-~ivSn~~~------~~~~~~~~~~~l~~~fd 115 (157)
.-.+.+.++++.|+++|. .+ +++-+... ...+..++.+|++..|.
T Consensus 62 ~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 62 HGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred CCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 345777888888888875 33 44444421 23457788889864443
No 316
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.68 E-value=12 Score=30.03 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.1
Q ss_pred ceEEEEeCCCCcccC
Q 044369 3 DIVVVFDFDKTIIDC 17 (157)
Q Consensus 3 ~k~viFD~DgTL~d~ 17 (157)
.|+++.|+||||.-.
T Consensus 222 kK~LVLDLDNTLWGG 236 (574)
T COG3882 222 KKALVLDLDNTLWGG 236 (574)
T ss_pred cceEEEecCCccccc
Confidence 689999999999754
No 317
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.53 E-value=34 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEE-----eCCChHHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIV-----SDANLFFIETIL 105 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~iv-----Sn~~~~~~~~~~ 105 (157)
..+||..+.|+.||++|++++.+ |++++.+....+
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSv 76 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSV 76 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhh
Confidence 35677889999999999999655 888887555443
No 318
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=46.21 E-value=29 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChH
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.++++.|.+.|++++ +|.++..
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~gTa~ 24 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGGTAK 24 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccHHHH
Confidence 3566777777777774 4444433
No 319
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=45.68 E-value=33 Score=25.00 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
.-.+.+.++++.++++|.+++++|+.+...+...
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ 219 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNALQQR 219 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHh
Confidence 3456777888888999999999999876654443
No 320
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=68 Score=21.64 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHcCCc-EEEEeCCChHHHHHHHHHCCccc
Q 044369 72 IHPSIISAVKAAHDLGCD-LKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~-~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
=.||-.++...+++.|+. ++++|=+.......+.+..|...
T Consensus 57 hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~ 98 (165)
T COG0678 57 HLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEG 98 (165)
T ss_pred cCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCc
Confidence 468999999999999987 67778888888888988888774
No 321
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=45.08 E-value=9.9 Score=24.55 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.4
Q ss_pred CceEEEEeCCCCccc
Q 044369 2 ADIVVVFDFDKTIID 16 (157)
Q Consensus 2 ~~k~viFD~DgTL~d 16 (157)
....|+||+.+||-.
T Consensus 44 ~P~iV~FDmK~Tld~ 58 (128)
T PRK13717 44 APVTAAFNMKQTVDA 58 (128)
T ss_pred CCeEEEEehHHHHHH
Confidence 356789999988754
No 322
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=45.07 E-value=27 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
...+.+..|+++|++++|||++-.
T Consensus 32 ~l~~~ia~L~~~G~eVilVSSGAi 55 (369)
T COG0263 32 ELVRQVAALHKAGHEVVLVSSGAI 55 (369)
T ss_pred HHHHHHHHHHhCCCEEEEEccchh
Confidence 345778899999999999999844
No 323
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=44.94 E-value=45 Score=29.64 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=35.0
Q ss_pred hHHHHHHHHHH----cCCcEEEEeCCChHHHHHHHHHCCcc-cccchheeC
Q 044369 75 SIISAVKAAHD----LGCDLKIVSDANLFFIETILKHHGIW-ELFSEINTN 120 (157)
Q Consensus 75 g~~e~l~~L~~----~g~~~~ivSn~~~~~~~~~~~~~~l~-~~fd~i~~~ 120 (157)
...++++.+++ ..+.++++|+.+...+..+++..++. ..||.++|+
T Consensus 788 ~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 788 IIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 34445556652 23678999999999999999999986 478998873
No 324
>PRK15482 transcriptional regulator MurR; Provisional
Probab=44.62 E-value=36 Score=24.98 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
..-.+.+.++++..+++|.+++.+|+.....+..
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~ 225 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPLRR 225 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH
Confidence 3456778888888899999999999887764433
No 325
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.52 E-value=29 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
...+|+..+++++|+++|.++.+...-
T Consensus 70 ~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 70 RKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999999999886643
No 326
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=44.11 E-value=28 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCh
Q 044369 76 IISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
+++++..|+++|++++++=...+
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEecCC
Confidence 35678888888888888755444
No 327
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.05 E-value=89 Score=20.36 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=28.8
Q ss_pred CCCChhHHHHHHHHHHcCC--cEEEEeCCC------hHHHHHHHHHCCcccccc
Q 044369 70 APIHPSIISAVKAAHDLGC--DLKIVSDAN------LFFIETILKHHGIWELFS 115 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~--~~~ivSn~~------~~~~~~~~~~~~l~~~fd 115 (157)
..-.+.+.++++.|++.|. ..+++-++. .......++.+|++..|+
T Consensus 65 ~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 65 GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 3456788888999988744 123344433 345667788888664443
No 328
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=43.76 E-value=36 Score=23.77 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
-.+.+.+.++..|++|.+++.+|+.+...+...
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhc
Confidence 467788899999999999999999876544443
No 329
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=43.66 E-value=66 Score=22.85 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+++--.+..|.+++..+++||.++...+..+.++.|..
T Consensus 92 ~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~ 130 (211)
T PF05988_consen 92 ADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWT 130 (211)
T ss_pred HhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCC
Confidence 455557788999999999999999999999999999976
No 330
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=43.41 E-value=31 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=25.2
Q ss_pred hCCCChhHHHHHHHHHHcCC-cEEEEeCCCh
Q 044369 69 RAPIHPSIISAVKAAHDLGC-DLKIVSDANL 98 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~-~~~ivSn~~~ 98 (157)
+.-+.++..++++.+++.|+ .+.+.||+..
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 35567889999999999888 8999999964
No 331
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=43.15 E-value=38 Score=18.50 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEeC
Q 044369 74 PSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn 95 (157)
|+-.+-|..|.+.|.++.|.|-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 5567889999999999988763
No 332
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.82 E-value=80 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGI 110 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l 110 (157)
.++.+.+++.|+.++.+|...........+..++
T Consensus 47 ~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 47 SKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred HHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 3444455556677766666655544444555444
No 333
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=42.81 E-value=45 Score=24.29 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
--.|.+.+.++..+++|.+++.+|+.+...+..
T Consensus 129 G~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~ 161 (257)
T cd05007 129 GRTPYVLGALRYARARGALTIGIACNPGSPLLQ 161 (257)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 346889999999999999999999887765544
No 334
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=42.64 E-value=42 Score=25.02 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
.--.+.+.+.++.++++|.+++.+|+.....+...
T Consensus 99 sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 99 SGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLA 133 (321)
T ss_pred CCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHh
Confidence 33567888999999999999999999877655544
No 335
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=42.46 E-value=16 Score=25.61 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=11.9
Q ss_pred eEEEEeCCCCcccC
Q 044369 4 IVVVFDFDKTIIDC 17 (157)
Q Consensus 4 k~viFD~DgTL~d~ 17 (157)
..|-||+|||++-.
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 57899999999765
No 336
>PLN02382 probable sucrose-phosphatase
Probab=42.39 E-value=52 Score=25.84 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.++++.+.++|+.++++|+.+...+..+.+.+++.
T Consensus 35 ~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~ 69 (413)
T PLN02382 35 NALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL 69 (413)
T ss_pred HHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC
Confidence 34457788889999999999988888888888754
No 337
>PHA02416 hypothetical protein
Probab=42.27 E-value=33 Score=21.76 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
+.-+++|.+++..+|.-+.+||+...+...+
T Consensus 12 eankdlldyfknknytrvaltnstdffwsqi 42 (167)
T PHA02416 12 EANKDLLDYFKNKNYTRVALTNSTDFFWSQI 42 (167)
T ss_pred hhhhHHHHHhhcCCceEEEeecCcchhhhhc
Confidence 3456889999999999999999988766554
No 338
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=42.24 E-value=47 Score=22.48 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
.++++.+++.||++..+|+....-+..+.+.+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 45667777778888888777666666655543
No 339
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=42.16 E-value=71 Score=19.33 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
...+.|.+.|++++.=...........+..+|..
T Consensus 43 ~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 43 HLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 5677888889999888888888888888887753
No 340
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=41.93 E-value=83 Score=19.80 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=4.7
Q ss_pred CCcEEEEeCC
Q 044369 87 GCDLKIVSDA 96 (157)
Q Consensus 87 g~~~~ivSn~ 96 (157)
+.+.-+++..
T Consensus 79 ~~~~~~l~D~ 88 (140)
T cd02971 79 GLNFPLLSDP 88 (140)
T ss_pred CCCceEEECC
Confidence 4444555543
No 341
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=41.69 E-value=45 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 45678888888888888888888877664443
No 342
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=41.29 E-value=71 Score=19.35 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
++.+.++.+|.++.++.-.+ .+...++..|+..
T Consensus 64 ~~~~~~~~~g~~l~l~g~~~--~v~~~l~~~gl~~ 96 (109)
T cd07041 64 RLARALRLLGARTILTGIRP--EVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHcCCeEEEEeCCH--HHHHHHHHhCCCh
Confidence 56677778888887776543 3677888888765
No 343
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.08 E-value=34 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVS 94 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivS 94 (157)
...+|+..+++++|+++|+++.+..
T Consensus 62 ~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 62 PERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 4578999999999999999987754
No 344
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.90 E-value=19 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=12.6
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
-.++.+-|||.+|++
T Consensus 41 ~~lvL~eDGT~Vd~E 55 (78)
T cd06539 41 VTLVLEEDGTVVDTE 55 (78)
T ss_pred cEEEEeCCCCEEccH
Confidence 358889999999884
No 345
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=40.86 E-value=28 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
.|...|+++..++.|++++.|+-+
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 457889999999999999999864
No 346
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=40.61 E-value=70 Score=20.28 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
..+.+.+.++.+.++|.++++-|.+........++.
T Consensus 76 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 346777888888899999999998887655555554
No 347
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=40.51 E-value=37 Score=24.29 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHHHHc-CCcEEEEeCCChHHH
Q 044369 70 APIHPSIISAVKAAHDL-GCDLKIVSDANLFFI 101 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~~~ 101 (157)
..+.|++.++|+.|.+. +..++|+|+.+...+
T Consensus 24 ~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~ 56 (244)
T TIGR00685 24 AVVSDRLLTILQKLAARPHNAIWIISGRKFLEK 56 (244)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEECCChhhc
Confidence 45679999999999876 466789999965443
No 348
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=40.44 E-value=59 Score=20.68 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCCCChhHHHHHHHHHHcCC
Q 044369 46 MGRMMEELHAQGKTIEDIVEVLKRAPIHPSIISAVKAAHDLGC 88 (157)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~g~ 88 (157)
.+.+.+...+..++.+.+.++.....+.+++++-|..|....|
T Consensus 72 YE~LK~lTRg~~it~~~l~~fI~~L~ip~~~k~~L~~ltP~~Y 114 (115)
T PF08328_consen 72 YEKLKELTRGKKITKEDLREFIESLDIPEEAKARLLALTPATY 114 (115)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHTSSS-HHHHHHHHH--CCC-
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHhcCcccc
Confidence 3333333334566777788888888888888888887765443
No 349
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.31 E-value=19 Score=21.30 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.6
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
-.++.+-|||.+|++
T Consensus 40 ~~lvLeeDGT~Vd~E 54 (81)
T cd06537 40 LTLVLEEDGTAVDSE 54 (81)
T ss_pred eEEEEecCCCEEccH
Confidence 358889999999884
No 350
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=40.28 E-value=75 Score=19.75 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
.+++.++..|.++.+++..+. +...+...|+...|
T Consensus 67 ~~~~~~~~~g~~~~l~~i~p~--v~~~~~~~gl~~~~ 101 (117)
T COG1366 67 ALLKSARLRGVELVLVGIQPE--VARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHhcCCeEEEEeCCHH--HHHHHHHhCchhhc
Confidence 455667788887777776555 78888999998776
No 351
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=40.09 E-value=29 Score=23.35 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+-++++..++.|++++|+|+++- ++..++.....
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~--ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTL--ARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHH--HHHHHHHhCCC
Confidence 566788888888999999999876 45555554443
No 352
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=40.07 E-value=40 Score=20.13 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHcCCcEEEE
Q 044369 72 IHPSIISAVKAAHDLGCDLKIV 93 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~iv 93 (157)
..|.+.++++.|+++|++-+++
T Consensus 43 ~~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE
Confidence 3799999999999999764433
No 353
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=40.06 E-value=53 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
....||-...=+.|++.|++..|+|.++..-.+..++..|+.
T Consensus 69 N~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 69 NAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp -TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 445688777778888899999999999988778888888865
No 354
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=40.05 E-value=88 Score=19.12 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.0
Q ss_pred HHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 66 VLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 66 ~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
..+.-.+.-|..+.++.+++...+++++++.....+...+
T Consensus 11 a~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i 50 (99)
T PRK01018 11 AVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDI 50 (99)
T ss_pred HHHcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHH
Confidence 4456778899999999999876777776665544444333
No 355
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=39.99 E-value=12 Score=23.20 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHcC--CcEEEEeCCChHHHHH
Q 044369 74 PSIISAVKAAHDLG--CDLKIVSDANLFFIET 103 (157)
Q Consensus 74 pg~~e~l~~L~~~g--~~~~ivSn~~~~~~~~ 103 (157)
+...++++.+++.+ ..+.+.||+....-..
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~~~~~ 96 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLPTEEK 96 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTHHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeeccccc
Confidence 56788889999988 9999999998874443
No 356
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=39.93 E-value=21 Score=24.16 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=13.8
Q ss_pred CceEEEEeCCCCcccC
Q 044369 2 ADIVVVFDFDKTIIDC 17 (157)
Q Consensus 2 ~~k~viFD~DgTL~d~ 17 (157)
.+|+|+||-|++|.-.
T Consensus 42 ~ikavVlDKDNcit~P 57 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP 57 (190)
T ss_pred CceEEEEcCCCeeeCC
Confidence 4799999999999755
No 357
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=39.67 E-value=34 Score=25.79 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=21.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
..-+|+..++++.|+++|+++.+.-.
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 44689999999999999999876543
No 358
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=39.61 E-value=41 Score=24.80 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
-.+.+.+.++..+++|.+++.+|+.....+....
T Consensus 189 ~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~A 222 (281)
T COG1737 189 YTREIVEAAELAKERGAKVIAITDSADSPLAKLA 222 (281)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhh
Confidence 4467778888888999999999998666444443
No 359
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=39.49 E-value=17 Score=23.70 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=15.0
Q ss_pred CCceEEEEeCCCCcccCC
Q 044369 1 MADIVVVFDFDKTIIDCD 18 (157)
Q Consensus 1 M~~k~viFD~DgTL~d~~ 18 (157)
|-+..|-.||||.|.|-+
T Consensus 68 MCR~~iSV~wdG~lYDCD 85 (134)
T PF12345_consen 68 MCRSQISVDWDGYLYDCD 85 (134)
T ss_pred ccccceeECCCCeEeCCh
Confidence 556788999999999974
No 360
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.43 E-value=62 Score=23.60 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
...||=...=+.|++.|++..|+|.++..-....++..|+.
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 34577666777778889999999999998888888888865
No 361
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=39.33 E-value=51 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
..+-|..|+++|+++++||++....-...+..
T Consensus 36 l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~ 67 (284)
T cd04256 36 IVEQVSELQSQGREVILVTSGAVAFGKQRLRH 67 (284)
T ss_pred HHHHHHHHHHCCCEEEEEeeCcHHhChHHhhh
Confidence 44667788889999999998877665555543
No 362
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=39.18 E-value=38 Score=25.21 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
...+|+..+++++|+++|+++++..+
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 55789999999999999999988654
No 363
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.00 E-value=1.1e+02 Score=20.64 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+.+..+++.|..+.-+|-.+....+.+.+..++.
T Consensus 55 d~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 55 DLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred HHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3444555555656556665555555555555544
No 364
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=38.58 E-value=53 Score=25.11 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=35.3
Q ss_pred hhCCCChhHHHHHHHHHHc----CCcEEEEeCCChH----HHHHHHHHCCcccccchhe
Q 044369 68 KRAPIHPSIISAVKAAHDL----GCDLKIVSDANLF----FIETILKHHGIWELFSEIN 118 (157)
Q Consensus 68 ~~~~~~pg~~e~l~~L~~~----g~~~~ivSn~~~~----~~~~~~~~~~l~~~fd~i~ 118 (157)
+...+.||+.++|+.|.+. .++.+.+||+-.. -++.+-+.+|+.---|.|+
T Consensus 48 RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqvi 106 (389)
T KOG1618|consen 48 RGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVI 106 (389)
T ss_pred ecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHH
Confidence 3477999999999999887 7999999999544 2334444455553333333
No 365
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=38.26 E-value=20 Score=20.92 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.5
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
-.++++-|||.++++
T Consensus 39 ~~l~L~eDGT~VddE 53 (74)
T smart00266 39 VTLVLEEDGTIVDDE 53 (74)
T ss_pred cEEEEecCCcEEccH
Confidence 358899999999884
No 366
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.21 E-value=39 Score=20.83 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
.++.+.++.+|.++.++.- ...+...++..|+.+.+
T Consensus 70 ~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 70 VDIIKELRRRGVQLVLVGL--NPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHTTCEEEEESH--HHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCCChhc
Confidence 4677788888998887765 44577779999988765
No 367
>PRK02947 hypothetical protein; Provisional
Probab=37.96 E-value=46 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
..-.+.+.++++.++++|.+++.+|+...
T Consensus 116 sG~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 116 SGRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 33567899999999999999999999763
No 368
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.96 E-value=41 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
..-+|+..+++++|+++|.++++..+-
T Consensus 66 ~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 66 PTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 446899999999999999998876543
No 369
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=37.93 E-value=85 Score=18.45 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=21.9
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEe-CCChH
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVS-DANLF 99 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivS-n~~~~ 99 (157)
...+.-|..+.++.+++...+++++. |.+..
T Consensus 9 agkl~~G~~~v~kai~~gkaklViiA~D~~~~ 40 (82)
T PRK13602 9 AKSIVIGTKQTVKALKRGSVKEVVVAEDADPR 40 (82)
T ss_pred cCCEEEcHHHHHHHHHcCCeeEEEEECCCCHH
Confidence 35678899999999987656665554 44554
No 370
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.91 E-value=42 Score=25.23 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
...+|+..+++++|+++|+++.+..+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 56889999999999999999987664
No 371
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=37.26 E-value=48 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChH
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.++++.|+++|+.+.++++....
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 346777888999999999887655
No 372
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=37.22 E-value=60 Score=24.21 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
-.|.+.+.++.++++|.+++.+|+.+...+.
T Consensus 138 ~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La 168 (291)
T TIGR00274 138 RTPYVIAGLQYARSLGALTISIACNPKSAAS 168 (291)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCChhH
Confidence 3577999999999999999999987775443
No 373
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=37.07 E-value=90 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
+..+.+-+..|++.|.+++|++++.. .+...++.+++.
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~-~~~~~~~~~~~~ 52 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGP-EINELLEALGIP 52 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcH-HHHHHHHHcCCC
Confidence 34455666777788888888877654 466677777754
No 374
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.98 E-value=59 Score=24.33 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=25.5
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
-.|.+.+.++..+++|.+++.+|+.+...+.
T Consensus 143 ~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La 173 (299)
T PRK05441 143 RTPYVIGALEYARERGALTIGISCNPGSPLS 173 (299)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCChhh
Confidence 4678999999999999999999988765443
No 375
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.76 E-value=44 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
...+|+..++++.|+++|+++.+..+
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 46889999999999999999987433
No 376
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=36.49 E-value=45 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
.|=+..+.+.|+++|++++|+|-+...
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 466778899999999999999988653
No 377
>PF14682 SPOB_ab: Sporulation initiation phospho-transferase B, C-terminal; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.16 E-value=22 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=15.5
Q ss_pred eEEEEeCCCCcccCCchHHHHHh
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDE 26 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~ 26 (157)
..+.||+-|+|.+.+..+. +.+
T Consensus 74 ~~~fFDf~G~l~~~~~l~~-~~~ 95 (115)
T PF14682_consen 74 VRFFFDFSGILTDLEALQQ-FRE 95 (115)
T ss_dssp EEEEEEEES-BS-GGGHHH-HHH
T ss_pred EEEEEEccEEEcCHHHHHH-HHh
Confidence 4588999999999887777 443
No 378
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=36.09 E-value=52 Score=24.64 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
--.+.+.++++.++++|.+++.+|+.+...+.
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la 136 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPESSMA 136 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCccc
Confidence 34678899999999999999999998766444
No 379
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=36.06 E-value=46 Score=25.98 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC-Cccccc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH-GIWELF 114 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~-~l~~~f 114 (157)
......+...|-.|-++|++++|||..-.......-+++ |+.+.|
T Consensus 165 l~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GLL~a~ 210 (408)
T PF06437_consen 165 LEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGLLDAF 210 (408)
T ss_pred CCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 444556666666777789999999998666555554443 444433
No 380
>PF11181 YflT: Heat induced stress protein YflT
Probab=36.03 E-value=71 Score=19.56 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHcCCc---EEEEeCCCh
Q 044369 74 PSIISAVKAAHDLGCD---LKIVSDANL 98 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~---~~ivSn~~~ 98 (157)
..+.+.++.|+.+||. ++|+|....
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d~~ 37 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKDKD 37 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcCch
Confidence 3567888999999987 899996544
No 381
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.81 E-value=46 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
.-+|+..++++.|+++|+++.+..+
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3578999999999999999976433
No 382
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=35.71 E-value=47 Score=21.50 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=19.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
.--.|-+.+++.+.|++|.+++.+|+
T Consensus 113 SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 113 SGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 33568888999999999999988875
No 383
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.18 E-value=91 Score=22.31 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
....||-...=+-|++.+++..|++.++...++.-++.-|+. +|+-
T Consensus 70 NpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlG----YIiv 115 (277)
T COG1927 70 NPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLG----YIIV 115 (277)
T ss_pred CCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCe----EEEe
Confidence 445677777778888889999999999999999999998875 5554
No 384
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=35.08 E-value=61 Score=20.54 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHHcCC-cEEEEeCCChH
Q 044369 73 HPSIISAVKAAHDLGC-DLKIVSDANLF 99 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~-~~~ivSn~~~~ 99 (157)
.|.+.++++.+++.+. +..+.||+...
T Consensus 69 ~~~l~~i~~~~k~~~~~~~~~~tng~~~ 96 (139)
T PF13353_consen 69 YDELLEILKYIKEKFPKKIIILTNGYTL 96 (139)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEETT--H
T ss_pred HhHHHHHHHHHHHhCCCCeEEEECCCch
Confidence 5889999999999988 78999999775
No 385
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=35.01 E-value=44 Score=24.08 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
.--.+.+.+.++.++++|.+++.+|+.....+.
T Consensus 57 sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 89 (268)
T TIGR00393 57 SGESLELLNLIPHLKRLSHKIIAFTGSPNSSLA 89 (268)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECCCCCccc
Confidence 345688899999999999999999997665433
No 386
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=34.91 E-value=48 Score=25.18 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
...+|+..++++.|+++|+++.+..+
T Consensus 60 ~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 60 KKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEec
Confidence 55789999999999999999877654
No 387
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=34.69 E-value=1.1e+02 Score=18.83 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=33.6
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 63 IVEVLKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 63 ~~~~~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
+.-..+.....=|..+.++.++.-.-+++|+.++.....+..++.+
T Consensus 11 L~~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 11 LKLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred HHHHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 3445667778889999999999877777666665555566666665
No 388
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.67 E-value=1.1e+02 Score=23.13 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.2
Q ss_pred hCCCChhHHHHHHHHHHcCC--cEEEEeCCCh
Q 044369 69 RAPIHPSIISAVKAAHDLGC--DLKIVSDANL 98 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~--~~~ivSn~~~ 98 (157)
+.-+.++..++++.+++.+. .+.+.||+..
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~l 102 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGSR 102 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChhH
Confidence 45567899999999998754 6899999864
No 389
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=34.62 E-value=94 Score=19.44 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=25.8
Q ss_pred HhhCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 67 LKRAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 67 ~~~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
.+...+.-|..+.++.++....+++|+++.....+.
T Consensus 21 ~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~k 56 (108)
T PTZ00106 21 MKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRR 56 (108)
T ss_pred HHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHH
Confidence 356788899999999999766666666555444333
No 390
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.57 E-value=68 Score=17.58 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~ 97 (157)
...++++.++++|++.+.+|.-.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36689999999999999999876
No 391
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=34.16 E-value=35 Score=29.58 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=37.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
-+|++.+.+.+...++.|+++..+|+..........+..|+.
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi 630 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGII 630 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeee
Confidence 568889999999999999999999999888888888888754
No 392
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.77 E-value=1.3e+02 Score=19.78 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHc--CCcEEEEeCCCh
Q 044369 72 IHPSIISAVKAAHDL--GCDLKIVSDANL 98 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~--g~~~~ivSn~~~ 98 (157)
..+...++++.+++. ++++.+.||+..
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 57 LYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred ccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 445788888888887 888999999865
No 393
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=33.55 E-value=1.4e+02 Score=19.39 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCcEEEEeCC
Q 044369 77 ISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~ 96 (157)
.++-+++++.|++.-+++..
T Consensus 76 ~~~~~~~~~~~~~~~~l~D~ 95 (154)
T PRK09437 76 EKLSRFAEKELLNFTLLSDE 95 (154)
T ss_pred HHHHHHHHHhCCCCeEEECC
Confidence 34444455556666666543
No 394
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=33.54 E-value=60 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
+.-++.+++++.-..|.+++++||+..
T Consensus 82 ~akd~qq~~~Yav~~Gv~~~iVtnGrv 108 (284)
T COG2810 82 PAKDVQQLAKYAVDKGVEVGIVTNGRV 108 (284)
T ss_pred chHHHHHHHHHHHhcCcEEEEEeCCeE
Confidence 445777888999999999999999854
No 395
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=33.43 E-value=27 Score=20.57 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.5
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
-.++.+-|||.++++
T Consensus 41 ~~lvL~eDGTeVddE 55 (78)
T cd01615 41 VTLVLEEDGTEVDDE 55 (78)
T ss_pred eEEEEeCCCcEEccH
Confidence 358899999999884
No 396
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=33.39 E-value=26 Score=20.74 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.5
Q ss_pred eEEEEeCCCCcccCC
Q 044369 4 IVVVFDFDKTIIDCD 18 (157)
Q Consensus 4 k~viFD~DgTL~d~~ 18 (157)
-.++++-|||.+|++
T Consensus 43 ~~lvL~eDGT~VddE 57 (80)
T cd06536 43 ITLVLAEDGTIVEDE 57 (80)
T ss_pred eEEEEecCCcEEccH
Confidence 457899999999883
No 397
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=33.34 E-value=26 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=18.8
Q ss_pred HHHHcCCcEEEEeCCChHHHHHHHHHC-Cc
Q 044369 82 AAHDLGCDLKIVSDANLFFIETILKHH-GI 110 (157)
Q Consensus 82 ~L~~~g~~~~ivSn~~~~~~~~~~~~~-~l 110 (157)
-++..| +.+++|..++-+++.+++.+ |.
T Consensus 141 v~~~~~-~~~vv~~~PrvMve~Flkeyl~~ 169 (525)
T PLN02588 141 VLKRGG-KRVGVSDLPQVMIDVFLRDYLEI 169 (525)
T ss_pred HHhhcC-cEEEEecCCHHHHHHHHHHhcCc
Confidence 334434 46666669999999888764 44
No 398
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=33.18 E-value=57 Score=20.30 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHcCCcEE
Q 044369 75 SIISAVKAAHDLGCDLK 91 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ 91 (157)
+..++.+.|.+.|++++
T Consensus 14 ~~~~~a~~l~~~G~~i~ 30 (116)
T cd01423 14 ELLPTAQKLSKLGYKLY 30 (116)
T ss_pred hHHHHHHHHHHCCCEEE
Confidence 44455555555555553
No 399
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.11 E-value=1.3e+02 Score=22.66 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=24.1
Q ss_pred hCCCChhHHHHHHHHHH-cCC-cEEEEeCCCh
Q 044369 69 RAPIHPSIISAVKAAHD-LGC-DLKIVSDANL 98 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~-~g~-~~~ivSn~~~ 98 (157)
+.-+.++..++++.+++ .|+ .+.+.||+..
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~l 100 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGLL 100 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCchh
Confidence 35567899999999987 578 7899999864
No 400
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=33.03 E-value=77 Score=25.36 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeC----CChHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSD----ANLFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn----~~~~~~~~~~~~~~l~ 111 (157)
++.++=+.|++.|.++.|.++ .+...+..+++..++.
T Consensus 58 sL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~ 98 (472)
T PRK10674 58 QLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVT 98 (472)
T ss_pred HHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCC
Confidence 333444444555555555543 2344444444444443
No 401
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=33.01 E-value=31 Score=21.14 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCCChhHHHHHHHHHHcC-CcEEEEeCC
Q 044369 70 APIHPSIISAVKAAHDLG-CDLKIVSDA 96 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g-~~~~ivSn~ 96 (157)
..-.+...+.++.|++.| .++.+|..+
T Consensus 57 ~~~~~~~~~~l~~l~~~g~v~i~~C~~~ 84 (122)
T PF02635_consen 57 PEGDPPLQELLKELKEAGGVKIYVCETC 84 (122)
T ss_dssp GCTSHCHHHHHHHHHHTTT-EEEEEHHH
T ss_pred ccccccHHHHHHHHHhcCCcEEEEcHHH
Confidence 334678899999999997 999999765
No 402
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=32.91 E-value=48 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
.|-+.-+...|++.|+++.|.+|...
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA 38 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAA 38 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 36677888999999999999988544
No 403
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=32.79 E-value=1.3e+02 Score=21.51 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=38.0
Q ss_pred CCCChhHH-HHHHHHHHcCCcEEEEeCCChH-----HHHHHHHHCCcccccchhee
Q 044369 70 APIHPSII-SAVKAAHDLGCDLKIVSDANLF-----FIETILKHHGIWELFSEINT 119 (157)
Q Consensus 70 ~~~~pg~~-e~l~~L~~~g~~~~ivSn~~~~-----~~~~~~~~~~l~~~fd~i~~ 119 (157)
..+.|+.. ++...+++.|.+-+|+...... .++..++.+|+.-.|..++|
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~C 113 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFC 113 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCcccc
Confidence 45667766 6666677789999988877666 88888889887766666666
No 404
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=32.76 E-value=96 Score=18.50 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
++.++.+.|.+.|++++. |.++.. +++..|+.
T Consensus 1 e~~~~a~~l~~lG~~i~A-T~gTa~----~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYA-TEGTAK----FLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEEE-EHHHHH----HHHHTT--
T ss_pred CHHHHHHHHHHCCCEEEE-ChHHHH----HHHHcCCC
Confidence 456777777777775543 333333 34455554
No 405
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=32.57 E-value=56 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.--+.+.+.++.|++.|++.+|+|+..-.
T Consensus 163 I~t~eda~~a~~~lhq~~v~~vVITS~~~~ 192 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKGVKTVVITSFDLG 192 (308)
T ss_pred eccHHHHHHHHHHHHHhCCCEEEEEeeeeC
Confidence 556688999999999999999999987543
No 406
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=32.16 E-value=32 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=18.8
Q ss_pred eEEEEeCCCCcccCCchHHHHHhhchH
Q 044369 4 IVVVFDFDKTIIDCDSDNWVVDELHAT 30 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~~~~~~~~g~~ 30 (157)
.-+.||||+|-+......++++++|..
T Consensus 79 ~~~~F~Fn~~pFeIhDD~eVLK~m~~~ 105 (142)
T PF08781_consen 79 SEYHFDFNSTPFEIHDDIEVLKRMGLA 105 (142)
T ss_dssp SEEEEEESS--EEEEEHHHHHHHTTTT
T ss_pred cEEEEEcCCCceeeechHHHHHHHHhh
Confidence 468999999955554458888888764
No 407
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=31.98 E-value=1.4e+02 Score=19.76 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCCh--HHHHHHHHHCC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANL--FFIETILKHHG 109 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~--~~~~~~~~~~~ 109 (157)
+..++++++.+.|.++.|+|.-.. ..++.+...++
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~ 100 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFN 100 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhC
Confidence 455788888899999999987643 35666655554
No 408
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=31.96 E-value=61 Score=26.72 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILK 106 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~ 106 (157)
---+.+.++++.++++|.+++.+||.....+....+
T Consensus 347 G~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD 382 (604)
T PRK00331 347 GETADTLAALRLAKELGAKTLAICNVPGSTIARESD 382 (604)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcC
Confidence 356788899999999999999999987776555543
No 409
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=31.83 E-value=1.1e+02 Score=17.89 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
..+.+.+.++|....+...........+.+++|+..
T Consensus 44 ~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~~ 79 (86)
T PF08445_consen 44 AALARELLERGKTPFLYVDADNEASIRLYEKLGFRE 79 (86)
T ss_dssp HHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-EE
T ss_pred HHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCEE
Confidence 355677777888887777777777888889998764
No 410
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=31.72 E-value=57 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVS 94 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivS 94 (157)
...+|+..++++.|+++|+++.+..
T Consensus 60 ~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 60 PYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 5578999999999999999987654
No 411
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=31.67 E-value=72 Score=20.15 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=22.8
Q ss_pred hCCCChhHHHHHHHHHHcCCc-EEEEeC
Q 044369 69 RAPIHPSIISAVKAAHDLGCD-LKIVSD 95 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~-~~ivSn 95 (157)
.-.++..+.++++.+++.|+. +.++|+
T Consensus 94 ~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 94 KTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 355788899999999999985 888886
No 412
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=31.45 E-value=1.6e+02 Score=19.73 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc-cccchhee
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW-ELFSEINT 119 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~-~~fd~i~~ 119 (157)
......++|..++++|-++++--.+.. ...++..+|+. +.++.++-
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~k--g~tlln~~g~~~~~I~~vvD 99 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAK--GNTLLNYFGLDNDLIDYVVD 99 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SH--HHHHHHHHT--TTTS--EEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchH--HHHHHHHhCCCcceeEEEEe
Confidence 445667899999999988988887766 44567788884 55777763
No 413
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=31.42 E-value=1.4e+02 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=23.9
Q ss_pred hCCCChhHHHHHHHHHHc-CCc-EEEEeCCCh
Q 044369 69 RAPIHPSIISAVKAAHDL-GCD-LKIVSDANL 98 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~-g~~-~~ivSn~~~ 98 (157)
+.-+.++..++++.+++. |+. +.+.||+..
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 355678899999999986 875 888999964
No 414
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.15 E-value=97 Score=23.80 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 80 VKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 80 l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
++.-|+.|+++.++|.++.. -+..++++|-+.|
T Consensus 198 Vq~AKAMG~rV~vis~~~~k-keea~~~LGAd~f 230 (360)
T KOG0023|consen 198 VQYAKAMGMRVTVISTSSKK-KEEAIKSLGADVF 230 (360)
T ss_pred HHHHHHhCcEEEEEeCCchh-HHHHHHhcCccee
Confidence 44555667777777666543 3444555665443
No 415
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=31.09 E-value=38 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.1
Q ss_pred ceEEEEeCCCCcc-cCC
Q 044369 3 DIVVVFDFDKTII-DCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~-d~~ 18 (157)
.++-+||=||+|+ |+.
T Consensus 19 ~RARlyd~dG~Ll~DSr 35 (112)
T PF13756_consen 19 TRARLYDPDGNLLADSR 35 (112)
T ss_pred ceEEEECCCCCEEeecc
Confidence 4789999999997 453
No 416
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.07 E-value=83 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
+++-...+.+..|+++|+-++|+|-++...+..+++..+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp 293 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP 293 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC
Confidence 455667788999999999999999999998888888764
No 417
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.03 E-value=86 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIE 102 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~ 102 (157)
-.|.+.+.++..+++|.+++.+|+.+...+.
T Consensus 139 ~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La 169 (296)
T PRK12570 139 RTPYVIGALEYAKQIGATTIALSCNPDSPIA 169 (296)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCChhH
Confidence 4578899999999999999999988776443
No 418
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=30.94 E-value=70 Score=15.30 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEeCCCCcccC-CchHHHHHhhchHH
Q 044369 4 IVVVFDFDKTIIDC-DSDNWVVDELHATE 31 (157)
Q Consensus 4 k~viFD~DgTL~d~-~~~~~~~~~~g~~~ 31 (157)
+..++|+++..+.. .+..++.+.++...
T Consensus 2 ~V~~yd~~~~~i~~F~Si~eAa~~l~i~~ 30 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDSIREAARYLGISH 30 (37)
T ss_pred eEEEEECCCCeEEEEcCHHHHHHHhCCCH
Confidence 46789999998654 67788888877653
No 419
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=30.92 E-value=64 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFI 101 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~ 101 (157)
.+++.++.+.|.+.|+++. .|.++..++
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GTAk~L 37 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGTAKFL 37 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHHHHHH
Confidence 4788899999999999885 666655543
No 420
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=30.85 E-value=70 Score=19.85 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
+.+.+.++.+.+.++-+.++|..-...+...++.+. .+.+..|+
T Consensus 32 ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~~-~~~~P~Il 75 (104)
T PRK01395 32 QEAINTLRKLAMEDYGIIYITEQIAADIPETIERYD-NQVLPAII 75 (104)
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHhc-CCCCCEEE
Confidence 455677777776678888888888877777777664 33444444
No 421
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.40 E-value=82 Score=20.24 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
+.+.++++.+++.|.++.++|+...
T Consensus 76 ~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 76 EKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCc
Confidence 3467788999999999999998764
No 422
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.31 E-value=1.1e+02 Score=19.38 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCcE----EEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 76 IISAVKAAHDLGCDL----KIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~----~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
...++++|+++|+.. +.-+.-++..+..+++..|.. ++.++.
T Consensus 14 ~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~--~~~li~ 59 (117)
T COG1393 14 CRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDG--VEELIN 59 (117)
T ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCcc--HHHHHH
Confidence 456777777777665 444555666777777777743 334443
No 423
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=30.26 E-value=1.4e+02 Score=22.27 Aligned_cols=40 Identities=13% Similarity=-0.065 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
..++++.++++|+++.+=|=+....++.+++ +|++ .|+++
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GVd----gIiTD 289 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGAD----GVMTD 289 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCCC----EEEeC
Confidence 3578899999999999999877776776655 6875 66663
No 424
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=30.25 E-value=86 Score=25.03 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 044369 76 IISAVKAAH 84 (157)
Q Consensus 76 ~~e~l~~L~ 84 (157)
..+.|..|.
T Consensus 75 ~~~~l~~l~ 83 (475)
T TIGR02766 75 TVAALLDCV 83 (475)
T ss_pred HHHHHHHHH
Confidence 555555554
No 425
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.12 E-value=73 Score=19.75 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.7
Q ss_pred HHHHHHHHHcCCcE
Q 044369 77 ISAVKAAHDLGCDL 90 (157)
Q Consensus 77 ~e~l~~L~~~g~~~ 90 (157)
.++.+.|.+.|+++
T Consensus 15 ~~~a~~l~~~G~~i 28 (112)
T cd00532 15 VDLAPKLSSDGFPL 28 (112)
T ss_pred HHHHHHHHHCCCEE
Confidence 33344444444443
No 426
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.07 E-value=1.4e+02 Score=18.46 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHHcCC-cE-EEEeCCChHHHHHHHHHCCccc
Q 044369 72 IHPSIISAVKAAHDLGC-DL-KIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~-~~-~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
-.+.+.++++.+++.+. .+ .++.+.........++..|++.
T Consensus 63 ~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~ 105 (119)
T cd02067 63 HMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDA 105 (119)
T ss_pred cHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeE
Confidence 44667777788877754 33 3344333322234566677653
No 427
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=30.02 E-value=1.2e+02 Score=17.87 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=21.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEE-eCCChHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIV-SDANLFFIETI 104 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~iv-Sn~~~~~~~~~ 104 (157)
.+.-|..+.++.+++...+++++ ++.+......+
T Consensus 8 Klv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i 42 (82)
T PRK13601 8 KRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKI 42 (82)
T ss_pred cEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHH
Confidence 34568889999998765665555 55554433333
No 428
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=29.93 E-value=1.3e+02 Score=17.97 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWE 112 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~ 112 (157)
.++.+.++++|.++.++.-+ ..+...++..|+..
T Consensus 61 ~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~ 94 (100)
T cd06844 61 LERSRLAEAVGGQFVLTGIS--PAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHcCCEEEEECCC--HHHHHHHHHhCchh
Confidence 46667778888877777554 34777778888764
No 429
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.63 E-value=63 Score=24.52 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEe
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVS 94 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivS 94 (157)
...+|+..++++.|+++|+++.+..
T Consensus 60 ~~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 60 KERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEE
Confidence 4578999999999999999997643
No 430
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=29.54 E-value=1.5e+02 Score=21.66 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+.++.+.+.|..+++++.+-......++...|+.
T Consensus 119 l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~ 154 (261)
T cd03334 119 LKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGIT 154 (261)
T ss_pred HHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCE
Confidence 345556666667777776666666666666666554
No 431
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=29.33 E-value=25 Score=22.30 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=9.9
Q ss_pred ceEEEEeCCCCccc
Q 044369 3 DIVVVFDFDKTIID 16 (157)
Q Consensus 3 ~k~viFD~DgTL~d 16 (157)
...|.||+.+|+-.
T Consensus 32 P~iV~fdmk~tld~ 45 (112)
T TIGR02744 32 PVTVAFDMKQTLDA 45 (112)
T ss_pred CeEEEEecHHHHHH
Confidence 45677888888744
No 432
>PLN00094 aconitate hydratase 2; Provisional
Probab=29.32 E-value=99 Score=27.08 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=28.9
Q ss_pred CChh---HHHHHHHHHHcCCcEEEE-----eCCChHHHHHHH
Q 044369 72 IHPS---IISAVKAAHDLGCDLKIV-----SDANLFFIETIL 105 (157)
Q Consensus 72 ~~pg---~~e~l~~L~~~g~~~~iv-----Sn~~~~~~~~~~ 105 (157)
.+|| ..+.++.||++|++++++ +++++...-..+
T Consensus 274 ~~~~~~~~~~~i~~lk~~g~~iivvG~nfG~GSSResA~nsl 315 (938)
T PLN00094 274 PREGIQGPIAQIEELKKKGHPLAYVGDVVGTGSSRKSATNSV 315 (938)
T ss_pred CCCCcccHHHHHHHHHHcCCceEEECCceecCCchHHHHHHH
Confidence 5666 888999999999999887 778888877777
No 433
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=29.28 E-value=83 Score=22.62 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeC-CChHHHHHHHHHCCcccccc
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSD-ANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn-~~~~~~~~~~~~~~l~~~fd 115 (157)
-.++.+++++.|++.|+|-=++.. +.....+.+.+..|.+.|..
T Consensus 168 tm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 168 TMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAE 212 (227)
T ss_pred HHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccCc
Confidence 456788888888888888655544 55555667777777765543
No 434
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=29.28 E-value=99 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILK 106 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~ 106 (157)
..+.+.+..+++.|++++||+++--..+...++
T Consensus 18 ~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~ 50 (239)
T cd04246 18 KRVAERIKKAVKKGYQVVVVVSAMGGTTDELIG 50 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCchHHHHHH
Confidence 344566677777788888877753333444433
No 435
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=29.05 E-value=64 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~ 97 (157)
.+.+.+..|+++|++++|||++-
T Consensus 31 ~la~~I~~l~~~G~~vvlVsSGa 53 (368)
T PRK13402 31 GLVQQIVYLKDQGHQVVLVSSGA 53 (368)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCh
Confidence 34467888889999999999874
No 436
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.97 E-value=1.6e+02 Score=19.21 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHcCC--cEEEEeCCC----hHH--HHHHHHHCCcccccc
Q 044369 71 PIHPSIISAVKAAHDLGC--DLKIVSDAN----LFF--IETILKHHGIWELFS 115 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~--~~~ivSn~~----~~~--~~~~~~~~~l~~~fd 115 (157)
.-.+...++++.|+++|. ..+++-++. ... .+..++++|++..|+
T Consensus 64 ~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 64 HGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred cCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEEC
Confidence 345667788888888875 344455542 121 345688888764443
No 437
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=28.97 E-value=1.5e+02 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFS 115 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd 115 (157)
.=.+++|+.+++.|+++++++-.-....+...+..++...+-
T Consensus 252 ~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~~~~w~ 293 (345)
T PF07611_consen 252 FFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKVYESWW 293 (345)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhchhhHHH
Confidence 345677888899999999999999988999999888854433
No 438
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.87 E-value=1.3e+02 Score=17.62 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHHHHHcC---CcEEEEeCCChHHHHHHHHHCCcc
Q 044369 78 SAVKAAHDLG---CDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 78 e~l~~L~~~g---~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.+++.|.+.| .++.++++.+.+..+.+.++++..
T Consensus 13 al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~ 49 (96)
T PF03807_consen 13 ALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQ 49 (96)
T ss_dssp HHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTE
T ss_pred HHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccc
Confidence 4667777888 889989888888899998998853
No 439
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=28.86 E-value=1.5e+02 Score=18.52 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
+.+++...++.|.++.++|..+.. -..+.+.+
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~-G~~L~~~~ 102 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEE-GEQLLKGF 102 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHH-HHHHHHCT
T ss_pred HHHHHHHHHHcCCEEEEEcCCCcc-HHHHHhcC
Confidence 688888889999999999998764 33343444
No 440
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=28.83 E-value=82 Score=19.64 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
.+.++++.|.+.++.+.++|......++...++..-.+-+..++
T Consensus 34 ~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv 77 (104)
T COG1436 34 ELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIV 77 (104)
T ss_pred HHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEE
Confidence 47789999999999999999999998888888875443333344
No 441
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=28.69 E-value=1.1e+02 Score=19.17 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEeC------CChHHHHHHHHHCCc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSD------ANLFFIETILKHHGI 110 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn------~~~~~~~~~~~~~~l 110 (157)
|...++.++++++|+.++.++. .+...++..++..++
T Consensus 43 p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (126)
T cd03012 43 PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGI 85 (126)
T ss_pred HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCC
Confidence 3344444444444555544432 223344455555544
No 442
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=28.54 E-value=63 Score=24.58 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCChhH--HHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSI--ISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~--~e~l~~L~~~g~~~~ivSn 95 (157)
...+|+. .+++++|+++|+++.+..+
T Consensus 60 ~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 60 PVRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred cccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 4467888 9999999999999877654
No 443
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=28.40 E-value=1.4e+02 Score=22.04 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCccccc
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELF 114 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~f 114 (157)
.+...+-+..|+..|.+++++-++... +...++.+|+...|
T Consensus 41 ~~~~~~di~~l~~~g~~~VlVHGgg~~-i~~~~~~~g~~~~~ 81 (284)
T CHL00202 41 KADIIKDILFLSCIGLKIVVVHGGGPE-INFWLKQLNISPKF 81 (284)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHHHHCCCCCEe
Confidence 445556677778889988888877664 77777888876543
No 444
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=28.37 E-value=76 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
--.+.+.+.++.++++|.+++.+||.....+....
T Consensus 349 G~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~a 383 (607)
T TIGR01135 349 GETADTLAALRLAKELGAKTLGICNVPGSTLVRES 383 (607)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhc
Confidence 35678888999999999999999998776555443
No 445
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=28.32 E-value=32 Score=25.57 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=10.6
Q ss_pred eEEEEeCCCCcccC
Q 044369 4 IVVVFDFDKTIIDC 17 (157)
Q Consensus 4 k~viFD~DgTL~d~ 17 (157)
.+|++|+.||-+|.
T Consensus 78 ~~i~vDmGGTTtDi 91 (290)
T PF01968_consen 78 NAIVVDMGGTTTDI 91 (290)
T ss_dssp SEEEEEE-SS-EEE
T ss_pred CEEEEeCCCCEEEE
Confidence 58999999999887
No 446
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=28.23 E-value=1.7e+02 Score=20.26 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCcEEEEeCC--ChHHHHHHHHHCCccc
Q 044369 77 ISAVKAAHDLGCDLKIVSDA--NLFFIETILKHHGIWE 112 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~--~~~~~~~~~~~~~l~~ 112 (157)
.+..+.|++. ++.|++.+ ....+...++..|+..
T Consensus 97 ~~a~~~l~~~--~V~V~~~G~~~~~~l~~aLaa~Gv~~ 132 (193)
T TIGR03882 97 AAALERLRQL--TVTVLSFGEGGAAALAAALAAAGIRI 132 (193)
T ss_pred HHHHHHHhcC--cEEEEecCCCcHHHHHHHHHHcCCCc
Confidence 3455666654 44444444 4333566678877764
No 447
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=28.13 E-value=52 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.7
Q ss_pred EEEEeCCCCcccCC
Q 044369 5 VVVFDFDKTIIDCD 18 (157)
Q Consensus 5 ~viFD~DgTL~d~~ 18 (157)
.++.+=|||+++.+
T Consensus 42 ~lvL~eDGT~VddE 55 (78)
T PF02017_consen 42 RLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEETTTTCBESSC
T ss_pred EEEEeCCCcEEccH
Confidence 47788999999974
No 448
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=28.12 E-value=1.4e+02 Score=20.56 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCc-EEEEeCCCh--HHHHHHHHHCCcccccc
Q 044369 76 IISAVKAAHDLGCD-LKIVSDANL--FFIETILKHHGIWELFS 115 (157)
Q Consensus 76 ~~e~l~~L~~~g~~-~~ivSn~~~--~~~~~~~~~~~l~~~fd 115 (157)
++.+++.|+++|.. +.|..+... ......++..|+....+
T Consensus 25 v~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 25 VRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred HHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 34567778888887 666665544 36777888888775533
No 449
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=28.10 E-value=77 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.155 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
=.|=+..+.+.|+++|++.+++|-+..-
T Consensus 62 KTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 62 KTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred cCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4577889999999999999999987554
No 450
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=27.85 E-value=76 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~ 97 (157)
.|=+..+++.|+++|++++|+|-+.
T Consensus 65 TP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 65 TPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4557778888999999999999664
No 451
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.82 E-value=76 Score=23.94 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
.|=+..+.+.|+++|++.+|+|-+
T Consensus 44 TP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 44 TPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
Confidence 355677888899999999999955
No 452
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=27.60 E-value=77 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=22.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
..-+|+..+++++|++.|+++.+...
T Consensus 60 ~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 60 GGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 56789999999999999999877543
No 453
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=27.59 E-value=39 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=20.4
Q ss_pred HcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 85 DLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 85 ~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
++|+.-++..+.-......+.+.+|+.
T Consensus 275 ~~G~Dpv~~gGaG~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 275 RYGLKTVVAAGAGEFLAKEAAARLGRE 301 (318)
T ss_pred HcCCCCeEEecchHHHHHHHHHHcCCC
Confidence 467777666666677888888988876
No 454
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.56 E-value=1.6e+02 Score=18.91 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHC
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLFFIETILKHH 108 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~ 108 (157)
+...+..|.+.|.+-..+.|.+....+.+.+.+
T Consensus 24 ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 24 ARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 456778889999997777888888788877776
No 455
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=27.50 E-value=1.2e+02 Score=27.10 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=50.8
Q ss_pred hCCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee---CCceeccCCcEEEeecc
Q 044369 69 RAPIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT---NSSFVDEEGRLKIFPHH 136 (157)
Q Consensus 69 ~~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~---~~~~~~~~~~~~~~p~~ 136 (157)
+..+.+.....+++|.+.+++.+++|+-+-.-.-.+.++.|+-.-...++. ++.-.+..+++...+-+
T Consensus 703 eNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve 773 (1140)
T KOG0208|consen 703 ENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVE 773 (1140)
T ss_pred ecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEcc
Confidence 377889999999999999999999999988877778888898877666553 22233444555554444
No 456
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=27.49 E-value=1.1e+02 Score=19.96 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
.+.+.+.++|+...++....+|+.++++.+-..+.
T Consensus 57 ~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~g~~f~ 91 (134)
T PRK03600 57 AVPKQVIRFLNDEHNRKLLRGVIASGNRNFGDAFA 91 (134)
T ss_pred cccHHHHHHHhccccCCcEEEEEEecCchHHHHHH
Confidence 57778888998887777889999999988745433
No 457
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.37 E-value=1.4e+02 Score=21.60 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
+.++..-.+..|..++..+++||-++...+..+-+++|.. |+.+.
T Consensus 97 laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~--f~w~S 141 (247)
T COG4312 97 LADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQ--FPWVS 141 (247)
T ss_pred HHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCc--ceeEe
Confidence 4456667788888889999999999999999999999876 44443
No 458
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=27.30 E-value=95 Score=19.44 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChH
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+..+++.|+++|+.+.++|.....
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 457788899989999999886664
No 459
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=27.18 E-value=40 Score=19.91 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=11.9
Q ss_pred EEEEeCCCCcccCC
Q 044369 5 VVVFDFDKTIIDCD 18 (157)
Q Consensus 5 ~viFD~DgTL~d~~ 18 (157)
.++.+-|||.++++
T Consensus 41 ~lvL~eDGT~Vd~E 54 (79)
T cd06538 41 SLVLDEDGTGVDTE 54 (79)
T ss_pred EEEEecCCcEEccH
Confidence 47889999999884
No 460
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=27.04 E-value=99 Score=22.50 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeC
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIVSD 95 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~ivSn 95 (157)
.-.+.+.++++..+++|.+++.+|+
T Consensus 186 G~t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 186 GRTKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECC
Confidence 3467788888899999999999997
No 461
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=26.91 E-value=46 Score=21.06 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 79 AVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 79 ~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
-+..|.++|....+|.|+-+. .....++++|.+-.
T Consensus 57 ~~~~L~~~GV~~~aC~nSl~a------~~i~~d~L~~gv~v 91 (112)
T COG1416 57 RVAELAQQGVEFVACGNSLRA------HDIDEDDLLDGVTV 91 (112)
T ss_pred HHHHHHHCCCEEEEecchHHH------cCCCHHHhcCCcEE
Confidence 678899999999999997552 33344566776553
No 462
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=26.77 E-value=1.8e+02 Score=18.54 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=9.6
Q ss_pred HHcCCcEEEEeCCChHHHHHHHHH
Q 044369 84 HDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 84 ~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
+..|+.++.++..+...+..+++.
T Consensus 59 ~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 59 KDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp HTTTCEEEEEEESSSHHHHHHHHH
T ss_pred ccCceEEEEecccCCHHHHHHHHh
Confidence 333444433333333334444444
No 463
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=26.67 E-value=87 Score=23.97 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~ 97 (157)
.|=+..+.+.|+++|++.+|+|-+.
T Consensus 72 TP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 72 TPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC
Confidence 4557788888999999999999653
No 464
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=26.66 E-value=88 Score=19.90 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=33.1
Q ss_pred hhHHHHHHH-HHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhe
Q 044369 74 PSIISAVKA-AHDLGCDLKIVSDANLFFIETILKHHGIWELFSEIN 118 (157)
Q Consensus 74 pg~~e~l~~-L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~ 118 (157)
+.+++.++. +.+.++-+.++|......+...++++. +.+..|+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIi 89 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVL 89 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEE
Confidence 567788888 777789999999998888888888865 4444454
No 465
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=26.64 E-value=1.7e+02 Score=21.16 Aligned_cols=35 Identities=9% Similarity=-0.146 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.++++.++++|+++.+=|=.....++.+++.+|++
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC
Confidence 47788899999999999988777777776547864
No 466
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=26.53 E-value=30 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
..+.++|+......++++|+|++.+.
T Consensus 53 g~i~~~l~n~~~~~v~v~VVTDG~rI 78 (182)
T PF00390_consen 53 GHIEEILRNWPERDVRVIVVTDGERI 78 (182)
T ss_dssp TCHHHHHTTSS-SS--EEEEE-SSSB
T ss_pred HHHHHHHHhhhccCceEEEEeCchhh
Confidence 46778888888889999999999873
No 467
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.51 E-value=1.7e+02 Score=21.25 Aligned_cols=40 Identities=23% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCcEEEEe----CCChHHHHHHHHHCCcccccchheeC
Q 044369 76 IISAVKAAHDLGCDLKIVS----DANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivS----n~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
..++++.++++|.++.+=| +.+...++.+ ..+|++ .|+++
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l-~~~Gvd----giiTD 255 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVY-LELGVD----CICPN 255 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHH-HHcCCC----EEEcC
Confidence 4577889999999999888 4444545444 455764 56653
No 468
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=26.05 E-value=90 Score=21.13 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCC-------hHHHHHHHHHCCcc
Q 044369 75 SIISAVKAAHDLGCDLKIVSDAN-------LFFIETILKHHGIW 111 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~-------~~~~~~~~~~~~l~ 111 (157)
.+.+++..|++.+..++++||-- ....+.+.+.+|..
T Consensus 104 ~i~~l~~~l~~~~~~~viVsnEvG~g~vp~~~~~r~f~d~lG~l 147 (169)
T cd00544 104 EIDALLAAVRNKPGTLILVSNEVGLGVVPENALGRRFRDELGRL 147 (169)
T ss_pred HHHHHHHHHHcCCCcEEEEECCcCCCCCCCCHHHHHHHHHHHHH
Confidence 34558888898999999999852 34556666665543
No 469
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.00 E-value=98 Score=19.47 Aligned_cols=32 Identities=9% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
..+-+.|+++|+++.++|+..- +...+..|+.
T Consensus 16 lala~~L~~rGh~V~~~~~~~~---~~~v~~~Gl~ 47 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPDF---RERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGGG---HHHHHHTT-E
T ss_pred HHHHHHHhccCCeEEEeecccc---eecccccCce
Confidence 3677899999999999888543 3334777765
No 470
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=25.56 E-value=85 Score=21.26 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=18.0
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
..+.+.+++..+++...+++||||-
T Consensus 99 ~~~~i~~~l~~l~~~~~~lViVsnE 123 (167)
T PF02283_consen 99 ILEEIERLLEALRERNADLVIVSNE 123 (167)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEEE-
T ss_pred HHHHHHHHHHHHHccCCCEEEEEcC
Confidence 3456678888898888999999995
No 471
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.47 E-value=1.7e+02 Score=19.21 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchhee
Q 044369 78 SAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINT 119 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~ 119 (157)
++.+.....+.-+.+-|+.....+..+++++++.-..+.+++
T Consensus 51 ~l~~~~~~~~~~~li~~~~~~~QL~ev~~~~~l~~~~~~~~s 92 (147)
T PF01927_consen 51 DLLKRRRVSGGVILIRSDDPEEQLREVLERFGLKLRLDPIFS 92 (147)
T ss_pred HHHHHhhccCCEEEEcCCCHHHHHHHHHHHcCCccccCCCCC
Confidence 455555544333455666777788899999998754454443
No 472
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.24 E-value=1e+02 Score=19.71 Aligned_cols=23 Identities=17% Similarity=-0.077 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEE
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIV 93 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~iv 93 (157)
.-.|...+.|+.|.++|++-+++
T Consensus 53 ~~~p~~~eaL~~l~~~G~~~V~V 75 (127)
T cd03412 53 IEVDTPEEALAKLAADGYTEVIV 75 (127)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEE
Confidence 45688999999999999886554
No 473
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=25.18 E-value=1e+02 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCCh
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANL 98 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~ 98 (157)
....+...+.|+++.++|++++++|....
T Consensus 236 Gn~~~~~~~~l~~a~~~gipVV~~sr~~~ 264 (313)
T PF00710_consen 236 GNVPPALLEALARAVERGIPVVVTSRCPS 264 (313)
T ss_dssp TBSSHHHHHHHHHHHHTTSEEEEEESSSC
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeccccc
Confidence 34778999999999999999999998765
No 474
>PRK04531 acetylglutamate kinase; Provisional
Probab=25.17 E-value=2.1e+02 Score=22.52 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccc
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWEL 113 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~ 113 (157)
+...+-|..|+..|.+++||-++.. .+...++..|+...
T Consensus 53 ~~l~~dla~L~~~G~~~VlVHGggp-qI~~~l~~~gie~~ 91 (398)
T PRK04531 53 EALASSLSFLQEVGLTPIVVHGAGP-QLDAELDAAGIEKE 91 (398)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCH-HHHHHHHHcCCCcE
Confidence 5666778888888999999988865 47888899998753
No 475
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.07 E-value=89 Score=22.61 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHH
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKH 107 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~ 107 (157)
+...+.+++..|.+.|..+.++|.--. +++.+.++
T Consensus 171 lv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~Vadr 205 (240)
T COG1126 171 LVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADR 205 (240)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhhe
Confidence 344678899999999999999998554 35554443
No 476
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.06 E-value=1.8e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHcCCcEEEE-eCCChHHHHHHHHHCCcc
Q 044369 72 IHPSIISAVKAAHDLGCDLKIV-SDANLFFIETILKHHGIW 111 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~iv-Sn~~~~~~~~~~~~~~l~ 111 (157)
+-+-+.++++++.+.|.+-+++ ++.....+...++..|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 4456778899998888886555 444555677777777764
No 477
>PHA01735 hypothetical protein
Probab=24.80 E-value=94 Score=17.83 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=25.3
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
-.+.....++||..++.=+.+.|++-..+...+
T Consensus 32 taDL~AA~d~Lk~NdItgv~~~gspl~~La~~~ 64 (76)
T PHA01735 32 TADLRAACDWLKSNDITGVAVDGSPLAKLAGLM 64 (76)
T ss_pred HHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcC
Confidence 356678899999999998888888876554443
No 478
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=24.78 E-value=96 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCC
Q 044369 76 IISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~ 96 (157)
+.+.+..++++|++++|||++
T Consensus 36 ~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 36 LVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred HHHHHHHHHHCCCeEEEEeeC
Confidence 446677778899999998665
No 479
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=24.67 E-value=1.1e+02 Score=15.59 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHhhCCCChhHHHHHHHHHHcCC
Q 044369 57 GKTIEDIVEVLKRAPIHPSIISAVKAAHDLGC 88 (157)
Q Consensus 57 ~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~g~ 88 (157)
+.+.+++.+..+.....+.+.+.|+.|.++.|
T Consensus 7 Pa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~Y 38 (44)
T PF11387_consen 7 PADKDELVRHARRNGAPDDVLDALERLPDREY 38 (44)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHCCccCC
Confidence 44566666666666666677777777765433
No 480
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.66 E-value=1e+02 Score=21.34 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
++.++.+.|++.|+++-+++=+....-..+
T Consensus 124 ~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~ 153 (187)
T cd01452 124 DLVKLAKRLKKNNVSVDIINFGEIDDNTEK 153 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCCCHHH
Confidence 344777888888888888877655433333
No 481
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=24.64 E-value=1.7e+02 Score=20.95 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
++..+-+.|++.|+.+.+.+|-+...+...++.+.
T Consensus 33 D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~ 67 (243)
T cd00032 33 DAENLTKLFESLGYEVEVKNNLTAEEILEELKEFA 67 (243)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 45555666677788888888888777776666553
No 482
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=24.49 E-value=1.8e+02 Score=20.91 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCC
Q 044369 75 SIISAVKAAHDLGCDLKIVSDANLFFIETILKHHG 109 (157)
Q Consensus 75 g~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~ 109 (157)
++..+-+.|++.|+++.+.+|-+...+...++.+.
T Consensus 31 D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~ 65 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFA 65 (241)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 45566666677788888888888777777776654
No 483
>PRK14129 heat shock protein HspQ; Provisional
Probab=24.44 E-value=47 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=9.9
Q ss_pred ceEEEEeCCCCcccCC
Q 044369 3 DIVVVFDFDKTIIDCD 18 (157)
Q Consensus 3 ~k~viFD~DgTL~d~~ 18 (157)
++.||||+|=+--.++
T Consensus 19 yrGVV~DVDP~fs~~e 34 (105)
T PRK14129 19 YLGVVVDIDPEYSLEE 34 (105)
T ss_pred CCeEEEeeCCCcCCCc
Confidence 4567777776655443
No 484
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=24.43 E-value=2e+02 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 72 IHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 72 ~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
+++...+-+..|+..|.+.+|+=++-. .+...++++|+...|-.
T Consensus 19 l~~~~~~di~lL~~~G~~~VvVHGggp-~I~~~l~~~gie~~f~~ 62 (265)
T COG0548 19 LLEAFASDIALLKSVGIRPVVVHGGGP-QIDEMLAKLGIEPEFVK 62 (265)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCch-HHHHHHHHcCCCCeeeC
Confidence 455556667788899999977666554 58889999999866543
No 485
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=24.31 E-value=2.1e+02 Score=19.97 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcc
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIW 111 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~ 111 (157)
.++++.++++|+++.+=|-.+...+..++ ..|++
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~~~~~~~~~-~~Gvd 213 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVNDPDDMQRYL-AMGVD 213 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HcCCC
Confidence 47788999999999888887766555444 55765
No 486
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.20 E-value=94 Score=20.02 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
.-+..++++.|+++|.++.+++..
T Consensus 109 D~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 109 DSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CccHHHHHHHHHHcCCEEEEEccC
Confidence 468889999999999999999886
No 487
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=24.16 E-value=59 Score=18.26 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.4
Q ss_pred eEEEEeCCCCcccCCch
Q 044369 4 IVVVFDFDKTIIDCDSD 20 (157)
Q Consensus 4 k~viFD~DgTL~d~~~~ 20 (157)
.-++||=|+.-+|+...
T Consensus 25 s~iiFDNded~tdSa~l 41 (65)
T PF06117_consen 25 SDIIFDNDEDKTDSAAL 41 (65)
T ss_pred CCeeecCCCcccchHHH
Confidence 35899999999998543
No 488
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=24.14 E-value=1e+02 Score=23.27 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCChH
Q 044369 76 IISAVKAAHDLGCDLKIVSDANLF 99 (157)
Q Consensus 76 ~~e~l~~L~~~g~~~~ivSn~~~~ 99 (157)
+.+.|..|.++|+.++|++++-..
T Consensus 31 ~a~~ia~l~~~g~~vviv~gngpq 54 (310)
T TIGR00746 31 TAPQIAKLIKRGYELVITHGNGPQ 54 (310)
T ss_pred HHHHHHHHHHCCCEEEEEECChHH
Confidence 446788888899999999887554
No 489
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=24.05 E-value=1.6e+02 Score=21.03 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHHH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIETI 104 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~ 104 (157)
..+.+.+..+++.|.+++||+++.......+
T Consensus 18 ~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l 48 (239)
T cd04261 18 KRVAERIKKRKKKGNQVVVVVSAMGGTTDEL 48 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCchhHHH
Confidence 3445667777777888888777633333333
No 490
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=24.04 E-value=1.2e+02 Score=25.29 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHH
Q 044369 73 HPSIISAVKAAHDLGCDLKIVSDANLFFIETIL 105 (157)
Q Consensus 73 ~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~ 105 (157)
-+++.+.++.++++|.+++.+||.....+....
T Consensus 382 T~d~i~al~~ak~~Ga~~IaITn~~~S~La~~a 414 (640)
T PTZ00295 382 TLDVVRALNLADELNLPKISVVNTVGSLIARST 414 (640)
T ss_pred cHHHHHHHHHHHHCCCCEEEEECCCCChhHHhc
Confidence 457778888888888888888888776555443
No 491
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.02 E-value=1.5e+02 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCChHHHHH
Q 044369 74 PSIISAVKAAHDLGCDLKIVSDANLFFIET 103 (157)
Q Consensus 74 pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~ 103 (157)
..+..++..+|+.|.+++.+|.++...+..
T Consensus 100 ~el~~~~~~aK~~g~~liaiT~~~~SsLak 129 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAITSNPDSSLAK 129 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCChHHH
Confidence 345667778888899998888887764433
No 492
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=24.02 E-value=98 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCC
Q 044369 77 ISAVKAAHDLGCDLKIVSDAN 97 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~ 97 (157)
+.+++.|+++ |+++|++|--
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di 50 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDI 50 (202)
T ss_pred HHHHHHHHhh-CCeEEEecee
Confidence 3456666665 7777777653
No 493
>PRK14558 pyrH uridylate kinase; Provisional
Probab=23.91 E-value=1.1e+02 Score=21.74 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCcEEEEeCC
Q 044369 78 SAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 78 e~l~~L~~~g~~~~ivSn~ 96 (157)
+.|++++++|++++|++++
T Consensus 30 ~~i~~~~~~g~~viiV~Gg 48 (231)
T PRK14558 30 NEIKSVVEYGFKIGIVIGA 48 (231)
T ss_pred HHHHHHHHCCCeEEEEECc
Confidence 5566677789999999744
No 494
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=23.82 E-value=1.2e+02 Score=21.19 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=23.3
Q ss_pred CCCChhHHHHHHHHHHc-CCcEEEEeCCChH-HHHHHHHHCCcc
Q 044369 70 APIHPSIISAVKAAHDL-GCDLKIVSDANLF-FIETILKHHGIW 111 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~-g~~~~ivSn~~~~-~~~~~~~~~~l~ 111 (157)
+-+.|=..+..++|.+. |+..+|+||++.. ....+.++++..
T Consensus 37 IDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~ 80 (199)
T PF14597_consen 37 IDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAK 80 (199)
T ss_dssp ES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--E
T ss_pred ecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCe
Confidence 34556667888888884 7889999999776 566666777653
No 495
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=23.52 E-value=1.1e+02 Score=23.77 Aligned_cols=46 Identities=9% Similarity=-0.038 Sum_probs=37.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccch
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSE 116 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~ 116 (157)
..-+||+.-+|..+.. .|.+++.|+...-...++++.+.-..++.+
T Consensus 213 f~kRPgvD~FL~~~a~-~yEIVi~sse~gmt~~pl~d~lDP~g~IsY 258 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLAK-YYEIVVYSSEQGMTVFPLLDALDPKGYISY 258 (393)
T ss_pred eccCchHHHHHHhhcc-cceEEEEecCCccchhhhHhhcCCcceEEE
Confidence 3368999999999985 599999999998888888888765554443
No 496
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.44 E-value=1.6e+02 Score=17.67 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEEeCC
Q 044369 70 APIHPSIISAVKAAHDLGCDLKIVSDA 96 (157)
Q Consensus 70 ~~~~pg~~e~l~~L~~~g~~~~ivSn~ 96 (157)
..+.+.=.+.++.|++.|+.+.|+.+.
T Consensus 73 ~~ls~~Q~~~~~~l~~~G~~v~V~~~~ 99 (100)
T PF08774_consen 73 DRLSPNQKEWIDKLREAGFRVAVCRSV 99 (100)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 668888889999999999999998653
No 497
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.35 E-value=1.1e+02 Score=19.90 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEE
Q 044369 71 PIHPSIISAVKAAHDLGCDLKIV 93 (157)
Q Consensus 71 ~~~pg~~e~l~~L~~~g~~~~iv 93 (157)
.+-|.+.+.|+.|.+.|++-+++
T Consensus 74 Wl~P~~~~~l~~l~~~G~~~i~v 96 (135)
T cd00419 74 WLEPSTDDALEELAKEGVKNVVV 96 (135)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEE
Confidence 45789999999999999764444
No 498
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=23.32 E-value=2e+02 Score=20.89 Aligned_cols=39 Identities=10% Similarity=-0.075 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCChHHHHHHHHHCCcccccchheeC
Q 044369 77 ISAVKAAHDLGCDLKIVSDANLFFIETILKHHGIWELFSEINTN 120 (157)
Q Consensus 77 ~e~l~~L~~~g~~~~ivSn~~~~~~~~~~~~~~l~~~fd~i~~~ 120 (157)
.++++.++++|+++.+=|-+....++.+ ..+|++ .|+++
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l-~~~GVd----gIiTD 259 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDEEDFEEA-FDLGAD----GVMTD 259 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCHHHHHHH-HhcCCC----EEEeC
Confidence 5788999999999999998887766655 446765 66653
No 499
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=23.22 E-value=1.6e+02 Score=17.91 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcC---CcEEEEeCCChHHHHHHHH
Q 044369 74 PSIISAVKAAHDLG---CDLKIVSDANLFFIETILK 106 (157)
Q Consensus 74 pg~~e~l~~L~~~g---~~~~ivSn~~~~~~~~~~~ 106 (157)
+...+.++.+.+++ +.+.|+.|++.......+.
T Consensus 10 ~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~ 45 (156)
T cd00761 10 PYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILE 45 (156)
T ss_pred HHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHH
Confidence 34455566665553 5677777776554444443
No 500
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=23.15 E-value=39 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=21.1
Q ss_pred ccchheeCCceeccCCcEEEeeccCCCCCCCCC
Q 044369 113 LFSEINTNSSFVDEEGRLKIFPHHDFTKSSHAC 145 (157)
Q Consensus 113 ~fd~i~~~~~~~~~~~~~~~~p~~~~~~~~~~c 145 (157)
.||.|++||-|.......++.|....++....|
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITL 147 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcC
Confidence 578899999876665555666655544444443
Done!