BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044370
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/553 (54%), Positives = 390/553 (70%), Gaps = 7/553 (1%)
Query: 4 QVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLL 63
Q+P S ++ MR A+F PS+WGD F N DK A K + LKEEV + ++
Sbjct: 7 QMPSSSPLSSNKDEMRPKADFQPSIWGDLFLN--CPDKNIDAETEKRHQQLKEEVRKMIV 64
Query: 64 AT-AGPIQ-LNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLL 121
A A Q L ID++QRLGV YHF +E+E L+++Y ++++D E+DLY S+RFRLL
Sbjct: 65 APMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY---HNNNDAENDLYTTSIRFRLL 121
Query: 122 RQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTH 181
R+HGYNVSCD FN FKD++GNFK S+ SD G+L LY+A++L VHGEDILDEAI+FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 182 LKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNL 241
L L +PL +V HAL+Q + RGLPR+E R Y+S+YQD SH KALL AK+DFN+
Sbjct: 182 LSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNM 241
Query: 242 VQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIA 301
+Q LH+KEL EI RWWKDLDF RKLP+ARDR+VE YFWI GVYFEP YSL R++LTKVIA
Sbjct: 242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIA 301
Query: 302 MTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIAN 361
M SI+DD YD Y T EEL +T IERWD +D++PEYM+ + ALLD+Y E+ + +A
Sbjct: 302 MASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAE 361
Query: 362 EGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM 421
G YRV+YAK AM L + Y E+KW +NY P EE+ AL T GY ML SF+GM
Sbjct: 362 HGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM 421
Query: 422 DNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQ 481
+IVT ETF W S PKII+AS II RFMDD+ HKF+ R SA+ECYM+++G++ Q
Sbjct: 422 GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQ 481
Query: 482 EVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMK 541
E + + V +AWKD+N+E L PT +P +L R+LNLARV+DV+Y+EGDGYT+VG K
Sbjct: 482 EAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAK 541
Query: 542 QNVAALLIDQVPI 554
+ +LLI+ + +
Sbjct: 542 GGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/547 (48%), Positives = 376/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 68
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 69 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 124
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 125 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 184
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 185 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 244
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 245 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDD 304
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 305 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 364
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y +L T S+LGM + T++
Sbjct: 365 CHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQ 423
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 424 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 483
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+I+V Y DGYTH +K ++ L
Sbjct: 484 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINL 543
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 544 LVDSIKI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/547 (48%), Positives = 375/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 68
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 69 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 124
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 125 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 184
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 185 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 244
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 245 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 304
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 305 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 364
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 365 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 423
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 424 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 483
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 484 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINL 543
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 544 LVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/547 (48%), Positives = 375/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 522 bits (1344), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/547 (47%), Positives = 376/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + +E++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAQEIEALKEQTRSMLLATGRKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E+++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDIIERLGISYHFEKEIDEILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/547 (48%), Positives = 375/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/547 (47%), Positives = 376/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + +E++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAQEIEALKEQTRSMLLATGRKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E+++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDIIERLGISYHFEKEIDEILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 519 bits (1336), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/541 (48%), Positives = 371/541 (68%), Gaps = 10/541 (1%)
Query: 18 MRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI--QLNLID 75
+R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT + LNLID
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAE-KYAKEIEALKEQTRNMLLATGMKLADTLNLID 59
Query: 76 AIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNM 135
I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S + F+
Sbjct: 60 TIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNISPEIFSK 115
Query: 136 FKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKA 195
F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL +PL+
Sbjct: 116 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLRE 175
Query: 196 QVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKKELCEIS 254
QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+EL ++S
Sbjct: 176 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVS 235
Query: 255 RWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYG 314
RWWKDLDF LP+ARDR+VECYFW LGVYFEP YS AR +L K I+M SI+DD +D YG
Sbjct: 236 RWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 295
Query: 315 TPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEA 374
T +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V +A E
Sbjct: 296 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIER 355
Query: 375 MKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVF 434
MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++ F+W+
Sbjct: 356 MKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLS 414
Query: 435 SRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNA 494
PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E + A
Sbjct: 415 KNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETA 474
Query: 495 WKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAALLIDQVP 553
WKDINE L PT V L LNLAR+++V Y DGYTH +K ++ LL+D +
Sbjct: 475 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIK 534
Query: 554 I 554
I
Sbjct: 535 I 535
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/547 (47%), Positives = 374/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYF LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/547 (47%), Positives = 374/547 (68%), Gaps = 10/547 (1%)
Query: 12 NAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI-- 69
N + +++R A+F PS+WGD+F +++ ++++ + KE++ALKE+ LLAT +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAE-KYAKEIEALKEQTRNMLLATGMKLAD 66
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVS 129
LNLID I+RLG+ YHFE+E++ L +YN+ + +DL +L+FRLLRQHG+N+S
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ----NSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 130 CDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHL 189
+ F+ F+D+ G FKESLASD LG+L+LYEA+H+ H +DIL++A+AF+T HL+S A HL
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182
Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+PL+ QV HAL Q LH+G+PR+E R +IS IY + S LL AKLDFNL+Q LHK+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDD 308
EL ++SRWWKDLDF LP+ARDR+VECYF LGVYFEP YS AR +L K I+M SI+DD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 309 IYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRV 368
+D YGT +EL+ +T+ I+RWD + +D+LP+YM+ + A+LDLY + EKE+++ G S+ V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 369 QYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKE 428
+A E MK +V Y ES WF E Y P + EY+ AL T+ Y L T S+LGM + T++
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQ 421
Query: 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488
F+W+ PKI+ AS II R +DD +++ E+ RG A+ +EC M+ +G+S +E +
Sbjct: 422 DFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAAL 547
AWKDINE L PT V L LNLAR+++V Y DGYTH +K ++ L
Sbjct: 482 NMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINL 541
Query: 548 LIDQVPI 554
L+D + I
Sbjct: 542 LVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/538 (35%), Positives = 298/538 (55%), Gaps = 6/538 (1%)
Query: 19 RRTANFHPSVWG-DRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQ--LNLID 75
RR+A++ P+ W D + ++ + +D + K L+ EV R++ L LID
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKD--KAKKLEAEVRREINNEKAEFLTLLELID 72
Query: 76 AIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNM 135
+QRLG+GY FE ++ +AL + D T+ L+ +L FRLLRQHG+ VS + F+
Sbjct: 73 NVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSG 132
Query: 136 FKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH-LSNPLK 194
FKD GNF E+L D +LSLYEA+ L + GE+ILDEA F +HLK ++ + L
Sbjct: 133 FKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELA 192
Query: 195 AQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEIS 254
QV HAL PLHR RLE I Y+ + LL LA LD+N++QS+++++L E S
Sbjct: 193 EQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETS 252
Query: 255 RWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYG 314
RWW+ + A KL FARDR++E ++W +GV FEP YS R + K+ + +IIDDIYDVYG
Sbjct: 253 RWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG 312
Query: 315 TPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEA 374
T +EL+LFT+ +ERWD ++++ LP+YM+ F AL + NEI + + + Y +A
Sbjct: 313 TLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKA 372
Query: 375 MKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVF 434
L + E+KW + P ++Y A +S + ++ + + KE + +
Sbjct: 373 WADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQ 432
Query: 435 SRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNA 494
II I R +D+ S E RG A++V CYM+ G+SE+ E + +
Sbjct: 433 KYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDET 492
Query: 495 WKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQV 552
WK +N+E L + P + A+NLAR Y GD +T ++ V +++ + +
Sbjct: 493 WKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/544 (34%), Positives = 301/544 (55%), Gaps = 13/544 (2%)
Query: 18 MRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQ-LNLIDA 76
+RR+ N+ P++W + + R L L +V L P+Q L LI
Sbjct: 5 IRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHD 63
Query: 77 IQRLGVGYHFERELEQALQHLYNEK--YSDDDTED-DLYRISLRFRLLRQHGYNVSCDKF 133
++ LG+ F+ E+++ L +YNE + +++ E DLY +L FRLLRQHG+N+S D F
Sbjct: 64 LKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVF 123
Query: 134 NMFKDDKG-NFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNP 192
N FK++KG +FK SLA D GML LYEA+ L GED L+ A F T L+ N
Sbjct: 124 NCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNE 183
Query: 193 LKAQ----VRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKK 248
+ +RH+L PLH + +E R +I Y + LAKL+FN++Q+ H++
Sbjct: 184 IDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQ 243
Query: 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPN-YSLARRILTKVIAMTSIID 307
EL ++SRWW L F KLPF RDR+VE +FW +G+ FEP+ + R++ +I + ++ID
Sbjct: 244 ELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FEPHQHGYQRKMAATIIVLATVID 302
Query: 308 DIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYR 367
DIYDVYGT +EL+LFT+ +RWD S+ +LP YMQ + + + ++ +I E +
Sbjct: 303 DIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFC 362
Query: 368 VQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIV-T 426
+QY ++++ LVE Y+ E+KW+H Y P ++EY+ +A ++ + + ++ N
Sbjct: 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHD 422
Query: 427 KETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEE 486
D ++ I+ + II R DD+ + FE RG ++CYMK+ SE+E E
Sbjct: 423 TAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482
Query: 487 LYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAA 546
+ + AWKD+N P ++ A N+ RV +Y GDG+ ++ +++A
Sbjct: 483 VKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAG 542
Query: 547 LLID 550
LL +
Sbjct: 543 LLFE 546
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 188/529 (35%), Positives = 297/529 (56%), Gaps = 19/529 (3%)
Query: 18 MRRTANFHPSVWGDRF-----ANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLN 72
MRR+ N++PS W F ++Y + + A +L L +K E+ ++ T QL
Sbjct: 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTL--VKMELEKE---TDQIRQLE 55
Query: 73 LIDAIQRLGVGYHFERELEQALQHLYNE----KYSDDDTEDDLYRISLRFRLLRQHGYNV 128
LID +QR+G+ HF+ E ++ L +Y + K E DLY SL FRLLR+HG+ V
Sbjct: 56 LIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQV 115
Query: 129 SCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH 188
+ + F+ FK+++G FKESL+ D G+L LYEA+ L GE L+ A F T L+
Sbjct: 116 AQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNE 175
Query: 189 --LSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLH 246
+ L ++ ++L PLH + R +I Y+ +L LA LD N+VQ+
Sbjct: 176 GGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQF 235
Query: 247 KKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSII 306
++EL E RWW++ F KLPFARDR+VECYFW G+ ++ AR ++ KV A+ ++I
Sbjct: 236 QEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVI 295
Query: 307 DDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSY 366
DDIYDVYGT EEL+ FT++I RWD +S+DQLP+YMQ F AL + ++ ++ E
Sbjct: 296 DDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN 355
Query: 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVT-SGYTMLTTVSFLGMDNIV 425
+ Y +++ L + Y E++WF+ + P +EEY+ + + SG MLT + F D+
Sbjct: 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSF- 414
Query: 426 TKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCE 485
TKET D ++ ++R S + R DD+ + E RG +++CYM + SE E +
Sbjct: 415 TKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARK 474
Query: 486 ELYRQVSNAWKDINEECLNP-TAVPMPLLMRALNLARVIDVVYKEGDGY 533
+ ++ WK +N E ++ + + A++L R+ ++Y GDG+
Sbjct: 475 HVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGH 523
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 305 bits (781), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 283/519 (54%), Gaps = 10/519 (1%)
Query: 20 RTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQ-LNLIDAIQ 78
RT + P++W D + + + + L + ++V L I+ L LID ++
Sbjct: 36 RTGGYQPTLW-DFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLR 94
Query: 79 RLGVGYHFERELEQALQHLYNEKYSDDDT-EDDLYRISLRFRLLRQHGYNVSCDKFNMFK 137
RLG+ HFERE+ + L Y Y++++ E DLY +LRFRLLRQ+ ++VS + F+ FK
Sbjct: 95 RLGISCHFEREIVEILNSKY---YTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFK 151
Query: 138 DDKG-NFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHL-KSVATHLSNPLKA 195
+ KG +FK SL D G+L LYEA+ L GE+ L A F T L K V L +
Sbjct: 152 NAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLS 211
Query: 196 QVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISR 255
+ AL P H + R +I Y+ +L LAKLDFN+VQ+ ++EL E SR
Sbjct: 212 SIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR 271
Query: 256 WWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGT 315
WW +LPF RDR+VECY+W GV + R +LTK+ A+ + IDD++D+YGT
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331
Query: 316 PEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAM 375
EEL+LFT I+RWD SM QLP YMQ + AL + NE+ + + Y ++
Sbjct: 332 LEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVW 391
Query: 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFS 435
L+E Y E+KW+++ + P +EEYM+ + ++ G + + F + + + +E + +
Sbjct: 392 VGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHK 451
Query: 436 RPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAW 495
I+RAS I R DD+ + E ERG +V+CYM + SE+E E + + W
Sbjct: 452 YHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTW 511
Query: 496 KDINEECLNPTAVPMPLLMRALNLARVIDVVYK-EGDGY 533
K +N+E + + + + A NLAR+ +Y+ E DG+
Sbjct: 512 KMMNKEMMTSSFSKYFVEVSA-NLARMAQWIYQHESDGF 549
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 298 bits (763), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 177/518 (34%), Positives = 286/518 (55%), Gaps = 34/518 (6%)
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLY---NEK---YSDDDTEDDLYRISLRFRLLRQ 123
+L ++D I RLG+ HFE+E+++AL ++Y NE+ + + DL +L FRLLR
Sbjct: 301 RLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRL 360
Query: 124 HGYNVSCDKFNMFKDDKGNFKESLAS---DALGMLSLYEAAHLGVHGEDILDEAIAFTTT 180
H YNVS F+ FKD G F S D ML+LY A+ L GE+ILDEA +F T
Sbjct: 361 HRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATK 420
Query: 181 HLK--------SVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASH----- 227
+L+ S A + L ++++AL+ H +PR+E +RY +Y+ D +
Sbjct: 421 YLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCV 480
Query: 228 YK-------ALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWI 280
YK L L KLDFN++QS+H++E+ ++ W++D FAR+R +E YF +
Sbjct: 481 YKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEFYFLV 539
Query: 281 LGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEY 340
+EP Y+ R + TKV + +++DD+YD YGT +ELKLFTE + RWD S + LP+Y
Sbjct: 540 AAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDY 599
Query: 341 MQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEY 400
M+ + D+ +E+ E E V + ++ + + GYY+E++W Y+P ++EY
Sbjct: 600 MKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEY 659
Query: 401 MRVALVTSGYTMLTTVSFLGMDN-IVTKETFDWV--FSRPKIIRASEIIGRFMDDIKSHK 457
++ + + G +L L MD ++++E + V R + + +I R DD K++K
Sbjct: 660 IKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYK 719
Query: 458 FEQERGHAASAVECYMKQHG-LSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRA 516
E+ RG AS++ECYMK H +E+E + +Y + A K++ E L P VP
Sbjct: 720 AEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKML 779
Query: 517 LNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554
RV V++K+GDG+ E+K ++ LI+ +P+
Sbjct: 780 FEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 8 ISSQNAKSQVMRRTANFHPSVWG 30
+ ++ S ++RRTAN HP+VWG
Sbjct: 14 VCDLSSTSGLIRRTANPHPNVWG 36
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 277 bits (709), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 165/511 (32%), Positives = 270/511 (52%), Gaps = 41/511 (8%)
Query: 74 IDAIQRLGVGYHFERELEQALQHLYNE------KYSDDDTEDDLYRISLRFRLLRQHGYN 127
+D ++RLG+ HF+ E+++AL ++Y+ ++ ++ D+ ++ R+LR HGYN
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYN 336
Query: 128 VSCDKFNMFKDDKGNFKESLASDALG---MLSLYEAAHLGVHGEDILDEAIAFTTTHLKS 184
VS D F+D+ G F L G ML++ +H+ GE I++EA T +L++
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396
Query: 185 VATHL--------SNPLKAQVRHALRQPLHRGLPRLEHRRYISIY-QDDASHYKAL---- 231
++ ++ +V +AL+ P H+ +PRLE R YI Y DD K +
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456
Query: 232 -------LTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVY 284
L LAKLDFN VQS+H+ EL ++ RWWK F L F R+R+ E YF
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVTEIYFSPASFI 515
Query: 285 FEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTF 344
FEP +S R + TK T I+DD+YD +G+ ++LKLFTE ++RWD S +DQ+P+ M+
Sbjct: 516 FEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKIC 575
Query: 345 FGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVA 404
F + +N+I KE + Y + K+ +E Y E++W Y+P EY+ A
Sbjct: 576 FVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENA 635
Query: 405 LVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGH 464
V+ + +S L ++T E + + ++ + GR ++D K+++ E+ +G
Sbjct: 636 SVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGE 695
Query: 465 AASAVECYMKQH-GLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVI 523
ASA++CYMK H +SE+E + +Y + NA +++N E +N +P AR++
Sbjct: 696 VASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIM 754
Query: 524 DVVYKEGDGYT---------HVGNEMKQNVA 545
+ Y +GDG T HV N + Q VA
Sbjct: 755 QLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 261 bits (668), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 257/511 (50%), Gaps = 29/511 (5%)
Query: 70 QLNLIDAIQRLGVGYHFERELEQALQHLYNE------KYSDDDTEDDLYRISLRFRLLRQ 123
+L+L+D I+ LG+G HF++E++ AL ++Y + D DL +L R LR
Sbjct: 249 RLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRM 308
Query: 124 HGYNVSCDKFNMFKDDKGNFKESLASDAL---GMLSLYEAAHLGVHGEDILDEAIAFTTT 180
HGYNVS D N FKD+ G F S + +++L+ A+ L E +D+A F
Sbjct: 309 HGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEP 368
Query: 181 HLK-SVATHLSNPLK--AQVRHALRQPLHRGLPRLEHRRYISIYQDD------------A 225
+L+ ++AT +S K ++ + + P H +PRLE R YI Y D+ +
Sbjct: 369 YLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPS 428
Query: 226 SHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYF 285
L LAKLDFN+VQSLH++EL ++RWWK+ A + F R R+ E YF F
Sbjct: 429 LSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF--SSATF 485
Query: 286 EPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFF 345
EP YS R TK+ + + DD+ D++ T +ELK FTE ++RWD S + ++PE MQT F
Sbjct: 486 EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCF 545
Query: 346 GALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVAL 405
L E+ ++ + + ++ ++ Y E +W YIP EEY++
Sbjct: 546 KVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYA 605
Query: 406 VTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHA 465
++ G T L M +V + + V + + R +D K+++ E+ RG
Sbjct: 606 ISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQ 665
Query: 466 ASAVECYMKQH-GLSEQEVCEELYRQVSNAWKDINEECLNPTA-VPMPLLMRALNLARVI 523
AS + CYMK + G +E++ + + R V A K+ + E P+ +PM NL +
Sbjct: 666 ASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCV 725
Query: 524 DVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554
+ YK DGY E+K + + ID + +
Sbjct: 726 QIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 120/265 (45%), Gaps = 34/265 (12%)
Query: 73 LIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDT--------EDDLYRISLRFRLLRQH 124
++D +QRLG+ +FE E+++ L +++ +Y D+ D+ ++ FRLLRQH
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVH--RYWTDNGICWARCSHVQDIDDTAMAFRLLRQH 308
Query: 125 GYNVSCDKFNMFKDDKGNFKESLASD--ALGMLSLYEAAHLGVHGEDILDEAIAFTTTHL 182
GY VS D F F+ + F S+ GM +LY A+ L E+IL A F+ +L
Sbjct: 309 GYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYL 368
Query: 183 KSVATH--------LSNPLKAQVRHALRQPLHRGLPRLEHRRYISIY--QDDASHYKAL- 231
+ L ++ AL P + LPR+E R YI Y ++D K L
Sbjct: 369 LEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLY 428
Query: 232 ----------LTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWIL 281
L LAK D+N Q+ H+ E +W+++ + + R ++ECY+
Sbjct: 429 RMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSELLECYYLAA 487
Query: 282 GVYFEPNYSLARRILTKVIAMTSII 306
FE S R + K + I
Sbjct: 488 ATIFESERSHERMVWAKSSVLVKAI 512
>pdb|2W48|A Chain A, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|B Chain B, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|C Chain C, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
pdb|2W48|D Chain D, Crystal Structure Of The Full-Length Sorbitol Operon
Regulator Sorc From Klebsiella Pneumoniae
Length = 315
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 140 KGNFKESLASDALGMLSLYEAAHLGVHGEDILD------EAIAFT-TTHLKSVATHLSNP 192
K KE++ + + G+L + + +G HG ++D + I F+ ++S+ +L P
Sbjct: 72 KFGLKEAVVASSDGLLEEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENL--P 129
Query: 193 LKAQVRHALRQPLHRGLP-RLEHRRYISIYQDDA-------SH---YKALLTLAKLDFNL 241
++Q R + P+ G +LE R +++ A SH + ALL + +
Sbjct: 130 QRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGI 189
Query: 242 VQSLHKKELCEISRWWKDLDFA 263
+QS H K IS +W LD A
Sbjct: 190 MQSQHFK---TISSYWDSLDVA 208
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 216 RYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARD---- 271
RYIS Y+D+ +L+ LDF S KKE+ E R K L F++ + +A+
Sbjct: 291 RYISTYKDERVKASKVLSGPALDF----SGDKKEVIEKIR--KALYFSKIMSYAQGFAQL 344
Query: 272 -RMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELK------LFTE 324
+ E + W L P ++A+ I + +I D + EL+ F +
Sbjct: 345 RKASEEFDWDL-----PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVD 399
Query: 325 VIERWDESSMD 335
+ +R+ E+ D
Sbjct: 400 ITKRYQEAVRD 410
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 216 RYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARD---- 271
RYIS Y+D+ +L+ LDF S KKE+ E R K L F++ + +A+
Sbjct: 290 RYISTYKDERVKASKVLSGPALDF----SGDKKEVIEKIR--KALYFSKIMSYAQGFAQL 343
Query: 272 -RMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELK------LFTE 324
+ E + W L P ++A+ I + +I D + EL+ F +
Sbjct: 344 RKASEEFDWDL-----PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVD 398
Query: 325 VIERWDESSMD 335
+ +R+ E+ D
Sbjct: 399 ITKRYQEAVRD 409
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 216 RYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARD---- 271
RYIS Y+D+ +L+ LDF S KKE+ E R K L F++ + +A+
Sbjct: 289 RYISTYKDERVKASKVLSGPALDF----SGDKKEVIEKIR--KALYFSKIMSYAQGFAQL 342
Query: 272 -RMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELK------LFTE 324
+ E + W L P ++A+ I + +I D + EL+ F +
Sbjct: 343 RKASEEFDWDL-----PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVD 397
Query: 325 VIERWDESSMD 335
+ +R+ E+ D
Sbjct: 398 ITKRYQEAVRD 408
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 324 EVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSY--RVQYAKEAMKILVEG 381
++ E E + + + M+TFFG L + +I + + ++ +Y V YA+ M + G
Sbjct: 785 KLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESG 844
Query: 382 YYDESKWFHENYIPKMEEY---MRVALVTSGYTMLTTVSFLG 420
S F +++ + + V L T T+ T + +G
Sbjct: 845 AIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVG 886
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 354 EIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEY--MRVALVTSGYT 411
+IE E G +Y Y +AMK LV +D S + E Y R +L GY
Sbjct: 62 DIETEEGVPGRAYLEPYVPKAMKYLVPALHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYA 121
Query: 412 MLTTVSFLGMDNIV 425
L+ ++ G+D V
Sbjct: 122 GLSMIAASGVDMAV 135
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 165 VHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHR 215
+HG + + + +A T+ L + T L+ + Q+ + L+RGLP HR
Sbjct: 343 LHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHR 393
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O7B|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7D|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
Length = 521
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 165 VHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHR 215
+HG + + + +A T+ L + T L+ + Q+ + L+RGLP HR
Sbjct: 343 LHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHR 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,769,302
Number of Sequences: 62578
Number of extensions: 712263
Number of successful extensions: 1968
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 30
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)