Query 044370
Match_columns 554
No_of_seqs 233 out of 905
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 5E-153 1E-157 1263.4 53.3 532 19-551 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 8E-137 2E-141 1155.7 46.1 480 67-554 269-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 8E-109 2E-113 924.4 41.2 443 67-553 309-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 1E-56 2.2E-61 427.8 14.5 173 29-201 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 7.2E-49 1.6E-53 396.3 23.2 269 231-499 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 4.9E-46 1.1E-50 378.4 30.8 282 245-527 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 1.2E-34 2.6E-39 298.8 22.1 252 246-503 11-266 (303)
8 PLN02150 terpene synthase/cycl 100.0 7E-31 1.5E-35 225.2 10.4 95 460-554 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 9.6E-21 2.1E-25 184.5 14.2 229 279-521 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 98.0 0.00018 3.9E-09 75.6 15.2 196 287-501 79-276 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.9 0.00021 4.6E-09 74.0 13.2 194 289-505 81-279 (357)
12 cd00867 Trans_IPPS Trans-Isopr 93.9 6.6 0.00014 38.6 18.7 118 367-500 86-214 (236)
13 PF00494 SQS_PSY: Squalene/phy 91.2 13 0.00028 37.5 17.0 198 290-515 17-233 (267)
14 cd00685 Trans_IPPS_HT Trans-Is 89.3 16 0.00035 36.9 15.7 121 366-500 108-239 (259)
15 TIGR03465 HpnD squalene syntha 88.6 30 0.00065 35.1 18.6 189 291-517 18-224 (266)
16 TIGR02749 prenyl_cyano solanes 83.2 62 0.0014 34.0 16.7 88 366-457 133-220 (322)
17 TIGR03464 HpnC squalene syntha 76.9 89 0.0019 31.7 19.5 119 276-420 7-130 (266)
18 PLN02857 octaprenyl-diphosphat 75.8 1E+02 0.0022 33.7 15.8 89 366-458 227-315 (416)
19 PLN02890 geranyl diphosphate s 75.4 91 0.002 34.2 15.3 90 366-459 227-316 (422)
20 cd00683 Trans_IPPS_HH Trans-Is 72.0 1.1E+02 0.0025 30.7 19.5 198 290-520 23-236 (265)
21 COG0142 IspA Geranylgeranyl py 69.3 1.2E+02 0.0027 31.7 14.3 108 366-478 134-251 (322)
22 TIGR02748 GerC3_HepT heptapren 64.7 1.9E+02 0.004 30.3 16.4 87 367-458 130-217 (319)
23 KOG1719 Dual specificity phosp 59.7 7.6 0.00016 36.5 2.6 30 461-490 119-149 (183)
24 PRK10888 octaprenyl diphosphat 52.3 3E+02 0.0066 28.9 16.8 88 366-458 130-218 (323)
25 PLN02632 phytoene synthase 48.5 3.5E+02 0.0076 28.5 19.3 193 292-513 74-281 (334)
26 COG3707 AmiR Response regulato 46.8 18 0.0004 35.1 3.1 46 446-491 127-173 (194)
27 PF03861 ANTAR: ANTAR domain; 45.6 22 0.00047 27.2 2.8 29 464-492 14-42 (56)
28 CHL00151 preA prenyl transfera 45.0 3.9E+02 0.0084 28.0 16.3 86 367-458 135-222 (323)
29 PF10776 DUF2600: Protein of u 38.2 5.1E+02 0.011 27.5 14.0 100 416-532 197-296 (330)
30 PF00348 polyprenyl_synt: Poly 33.7 5E+02 0.011 26.0 11.7 65 392-459 130-194 (260)
31 COG4738 Predicted transcriptio 31.0 1.6E+02 0.0036 26.2 6.1 81 71-159 14-102 (124)
32 PF12368 DUF3650: Protein of u 28.3 47 0.001 22.1 1.8 18 471-488 9-26 (28)
33 smart00463 SMR Small MutS-rela 25.8 81 0.0018 25.5 3.3 24 476-499 7-30 (80)
34 PRK10581 geranyltranstransfera 24.8 5.3E+02 0.011 26.7 9.9 112 376-500 152-276 (299)
35 smart00400 ZnF_CHCC zinc finge 24.6 83 0.0018 23.8 2.9 25 463-487 30-54 (55)
36 KOG3951 Uncharacterized conser 24.0 1.2E+02 0.0026 30.8 4.6 57 138-202 264-320 (321)
37 cd07604 BAR_ASAPs The Bin/Amph 23.9 85 0.0019 31.1 3.6 85 45-139 12-100 (215)
38 PF01713 Smr: Smr domain; Int 22.9 84 0.0018 25.6 2.9 27 476-502 4-30 (83)
39 COG1308 EGD2 Transcription fac 22.7 85 0.0019 28.3 3.0 21 469-489 88-108 (122)
40 KOG3906 Tryptophan 2,3-dioxyge 22.4 1E+02 0.0022 31.6 3.8 112 46-167 78-209 (399)
41 COG1093 SUI2 Translation initi 20.5 1.9E+02 0.004 29.6 5.2 64 455-521 96-169 (269)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=4.6e-153 Score=1263.44 Aligned_cols=532 Identities=55% Similarity=0.916 Sum_probs=510.2
Q ss_pred ccCCCCCCCCCcc-cccccCchhhhchhHHHHHHHHHHHHHHHHhhc---cCCC-cchhHHHHHHHhCCccccHHHHHHH
Q 044370 19 RRTANFHPSVWGD-RFANYTAEDKMNHARDLKELKALKEEVGRKLLA---TAGP-IQLNLIDAIQRLGVGYHFERELEQA 93 (554)
Q Consensus 19 r~~~~~~ps~w~~-~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~-~~l~liD~lqrLGi~~hF~~EI~~~ 93 (554)
||++|||||+||| +|+++++++.. ...+.+++++||++||+||.. ..|+ ++|+|||+||||||+|||++||+++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 7899999999999 77776554432 226789999999999999986 4588 9999999999999999999999999
Q ss_pred HHHHHhhcCCCC-CCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchHHH
Q 044370 94 LQHLYNEKYSDD-DTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILD 172 (554)
Q Consensus 94 L~~~~~~~~~~~-~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iLd 172 (554)
|++||++|.++. ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 999999986532 2357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhc---CCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHH
Q 044370 173 EAIAFTTTHLKSVATH---LSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKE 249 (554)
Q Consensus 173 ea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E 249 (554)
||++||++||++.++. ++++|+++|++||++|+|+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus 160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E 239 (542)
T cd00684 160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239 (542)
T ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999999886 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhc
Q 044370 250 LCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERW 329 (554)
Q Consensus 250 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rW 329 (554)
|+.+++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+||
T Consensus 240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rw 319 (542)
T cd00684 240 LKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERW 319 (542)
T ss_pred HHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccc
Q 044370 330 DESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSG 409 (554)
Q Consensus 330 d~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g 409 (554)
|+++++.+|+|||+||.++++++++++.++.++|+.+++.|++++|++++++|++||+|+++||+||++|||++|++|+|
T Consensus 320 d~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g 399 (542)
T cd00684 320 DISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIG 399 (542)
T ss_pred cccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhh
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHH
Q 044370 410 YTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYR 489 (554)
Q Consensus 410 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~ 489 (554)
+++++++++++||..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++++
T Consensus 400 ~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~ 479 (542)
T cd00684 400 LGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKK 479 (542)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999777799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccc
Q 044370 490 QVSNAWKDINEECLNP-TAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQ 551 (554)
Q Consensus 490 ~i~~~~k~ln~e~l~~-~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p 551 (554)
+|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.+|++|++||++|
T Consensus 480 ~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 480 MIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999987 7899999999999999999999999999999878999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=8e-137 Score=1155.75 Aligned_cols=480 Identities=28% Similarity=0.458 Sum_probs=456.9
Q ss_pred CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCC-CCCCchHHHHHHHHHhhhcCcccccccccceeccccccc
Q 044370 67 GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDD-DTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFK 144 (554)
Q Consensus 67 ~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~-~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~ 144 (554)
+. +++|+||+||||||+|||++||+++|+++|++|.++. +...||++|||+|||||||||+||||||++|+|+ + |+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~-F~ 346 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H-FS 346 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-cc
Confidence 56 9999999999999999999999999999999987531 1246999999999999999999999999999965 4 99
Q ss_pred ccc---ccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhhc-------CCCcHHHHHHHHccCccccCcchhhH
Q 044370 145 ESL---ASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH-------LSNPLKAQVRHALRQPLHRGLPRLEH 214 (554)
Q Consensus 145 ~~~---~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~~rle~ 214 (554)
+++ .+||+||||||||||+++|||+|||||+.||++||++.++. ++++|+++|+|||++|||+++|||||
T Consensus 347 ~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEa 426 (784)
T PLN02279 347 DSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLAN 426 (784)
T ss_pred chhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHH
Confidence 988 59999999999999999999999999999999999998763 47889999999999999999999999
Q ss_pred hhhHHhhcCCcc------------ccHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhc
Q 044370 215 RRYISIYQDDAS------------HYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILG 282 (554)
Q Consensus 215 r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~ 282 (554)
|+||++|++++. +|++||||||+|||+||++||+||++++|||+++|| .++||||+|++|||||++|
T Consensus 427 R~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa 505 (784)
T PLN02279 427 RRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAA 505 (784)
T ss_pred HHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHH
Confidence 999999999885 899999999999999999999999999999999999 6999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCc-ccccCchhHHHHHHHHHHHHHHHHHHHH-
Q 044370 283 VYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDES-SMDQLPEYMQTFFGALLDLYNEIEKEIA- 360 (554)
Q Consensus 283 ~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~-~~~~lpe~mk~~~~al~~~~~ei~~~~~- 360 (554)
++|||++|.+|++|||.+++++++||+||+|||+||++.||+||+|||.+ .++.+|+|||+||.+++++++|++.++.
T Consensus 506 ~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~ 585 (784)
T PLN02279 506 TLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFT 585 (784)
T ss_pred hhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 5689999999999999999999998754
Q ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHH
Q 044370 361 NEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKII 440 (554)
Q Consensus 361 ~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~ 440 (554)
++|+ ++.+|++++|++++++|++||+|+.+||+||++|||+|+.+|+|+++++..+++++|..+|+++++| +++|+|+
T Consensus 586 ~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~L~ 663 (784)
T PLN02279 586 WQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELHKLY 663 (784)
T ss_pred HcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhHHH
Confidence 5666 8899999999999999999999999999999999999999999999988889999999999999999 7999999
Q ss_pred HHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCHHHHHHH
Q 044370 441 RASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQH--GLSEQEVCEELYRQVSNAWKDINEECLNP--TAVPMPLLMRA 516 (554)
Q Consensus 441 ~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~--g~S~EeA~~~i~~~i~~~~k~ln~e~l~~--~~~p~~~~~~~ 516 (554)
++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|++|++++
T Consensus 664 ~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ 742 (784)
T PLN02279 664 KLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDLF 742 (784)
T ss_pred HHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 9999999999999999999999998 9999999996 89999999999999999999999999964 57999999999
Q ss_pred HHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccCC
Q 044370 517 LNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554 (554)
Q Consensus 517 ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 554 (554)
||++|++++||+++||||.+ .||++|++||++|||+
T Consensus 743 ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 743 WKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 99999999999999999975 6999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=8.4e-109 Score=924.39 Aligned_cols=443 Identities=22% Similarity=0.345 Sum_probs=403.0
Q ss_pred CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCC------CCCCchHHHHHHHHHhhhcCcccccccccceecc
Q 044370 67 GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDD------DTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDD 139 (554)
Q Consensus 67 ~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 139 (554)
++ ++|++||+||||||+|||++||+++|+++|++|.++. ....|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 67 9999999999999999999999999999999886521 113699999999999999999999999999986
Q ss_pred cccccccc---ccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhh--c------CCCcHHHHHHHHccCccccC
Q 044370 140 KGNFKESL---ASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVAT--H------LSNPLKAQVRHALRQPLHRG 208 (554)
Q Consensus 140 ~g~F~~~~---~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~ 208 (554)
+|+|++.+ .+|++|||+||||||+++|||.|||+|+.||+++|++.+. + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 79998765 7999999999999999999999999999999999999753 1 36789999999999999999
Q ss_pred cchhhHhhhHHhhcCCccc-------------cHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhh
Q 044370 209 LPRLEHRRYISIYQDDASH-------------YKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVE 275 (554)
Q Consensus 209 ~~rle~r~yI~~y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve 275 (554)
+||||||+||++|++++++ |+.||||||+|||+||++||+||++++|||+++|| .++||||+|++|
T Consensus 468 l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve 546 (800)
T PLN02592 468 LPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLL 546 (800)
T ss_pred cchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHH
Confidence 9999999999999987764 99999999999999999999999999999999999 499999999999
Q ss_pred hhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHH--------hcCCcccccCch------hH
Q 044370 276 CYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIE--------RWDESSMDQLPE------YM 341 (554)
Q Consensus 276 ~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~--------rWd~~~~~~lpe------~m 341 (554)
||||++|++|||+||.+|+++||.+++++++||+||+|||+||+++||++|+ |||.+++++||+ ||
T Consensus 547 ~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~m 626 (800)
T PLN02592 547 AYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTG 626 (800)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999997 999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHH-h
Q 044370 342 QTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFL-G 420 (554)
Q Consensus 342 k~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~-~ 420 (554)
|+||.++++++|+++.++.+.+|.++.+|++++|.++|+ +|..+|+ +|+|+..+++++++ .
T Consensus 627 ki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~l~ 688 (800)
T PLN02592 627 EELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTINLT 688 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHHHh
Confidence 999999999999999877776566799999999999998 5666665 44566666777777 5
Q ss_pred cCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Q 044370 421 MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHG-LSEQEVCEELYRQVSNAWKDIN 499 (554)
Q Consensus 421 ~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g-~S~EeA~~~i~~~i~~~~k~ln 499 (554)
+|..+|+|+++ +|++.++++.+.||+||++|+++|... .| +|+ +|.+++.+.|+.+++++.
T Consensus 689 ~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~eL~ 750 (800)
T PLN02592 689 AGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQELV 750 (800)
T ss_pred cCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHHHH
Confidence 69999999987 488999999999999999999998841 23 455 899999999999999999
Q ss_pred hhhcC-C-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccC
Q 044370 500 EECLN-P-TAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 500 ~e~l~-~-~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
+.+++ . +.+|++|++.|||++| +||.. ||+.| ..|+.+|..+|+|||+
T Consensus 751 ~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 751 QLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHHHhCCCCC
Confidence 99996 3 5699999999999999 55665 99998 4799999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1e-56 Score=427.79 Aligned_cols=173 Identities=54% Similarity=0.845 Sum_probs=148.3
Q ss_pred Cccccccc-Cchh----hhchhHHHHHHHHHHHHHHHHhhccC-CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhc
Q 044370 29 WGDRFANY-TAED----KMNHARDLKELKALKEEVGRKLLATA-GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEK 101 (554)
Q Consensus 29 w~~~~~~~-~~~~----~~~~~~~~~~~~~lk~~v~~~l~~~~-~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~ 101 (554)
|||+||++ +|.+ ....+.+.+++++||++||.||.... |+ ++|+|||+||||||+|||++||+++|+++|+.|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999943 2222 23356889999999999999998765 68 999999999999999999999999999999998
Q ss_pred CCCCCCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchHHHHHHHHHHHH
Q 044370 102 YSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTH 181 (554)
Q Consensus 102 ~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~ 181 (554)
........||++|||+|||||||||+||||||++|+|++|+|+.++.+||+||||||||||++++||+|||||+.||++|
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 65432345999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhcCC---CcHHHHHHHHc
Q 044370 182 LKSVATHLS---NPLKAQVRHAL 201 (554)
Q Consensus 182 L~~~~~~~~---~~l~~~V~~aL 201 (554)
|++.+++.. ++|+++|+|||
T Consensus 161 L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHhC
Confidence 999988553 34999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=7.2e-49 Score=396.34 Aligned_cols=269 Identities=29% Similarity=0.446 Sum_probs=246.9
Q ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhh
Q 044370 231 LLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIY 310 (554)
Q Consensus 231 lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~ 310 (554)
+|+|||+|||+||+.||+|++++++||+++|+..+.+.+|+|++.++|+.++.+++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999767787899999999999999999997777779999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHhHh
Q 044370 311 DVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANE-GWSYRVQYAKEAMKILVEGYYDESKWF 389 (554)
Q Consensus 311 D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~-~~~~~~~~~~~~w~~~~~a~l~EAkW~ 389 (554)
|.+|+.++++.|+++++||++.....+|+..++++.++.++++++...+.+. ++.....+|+++|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888788899999999999999999998777664 222356789999999999999999999
Q ss_pred hcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhH
Q 044370 390 HENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAV 469 (554)
Q Consensus 390 ~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V 469 (554)
..|++||++||+++|+.|+|+++++.++.+++|..++++..+++...+.+.++++.+++|+|||+||+||+++|+.+|.|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999999998776666666655566779999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 044370 470 ECYMKQHGLSEQEVCEELYRQVSNAWKDIN 499 (554)
Q Consensus 470 ~cyMke~g~S~EeA~~~i~~~i~~~~k~ln 499 (554)
.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=4.9e-46 Score=378.37 Aligned_cols=282 Identities=54% Similarity=0.884 Sum_probs=265.1
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHH
Q 044370 245 LHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTE 324 (554)
Q Consensus 245 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~ 324 (554)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999975555999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhh
Q 044370 325 VIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVA 404 (554)
Q Consensus 325 av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r 404 (554)
+++||+....+.+|+++++++.++.++++++...+.+.++.....++++.|.+|+.++.+|++|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999988888999999999999999999999888876666789999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHhcCCCCch-hHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHH
Q 044370 405 LVTSGYTMLTTVSFLGMDNIVTK-ETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEV 483 (554)
Q Consensus 405 ~iS~g~~~~~~~~~~~~g~~l~~-ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA 483 (554)
+.|+|++++++++++++|..+|+ ++.+. +..+++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++|
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~l~~~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA 239 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDILPEEAFEWL-PSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEA 239 (284)
T ss_pred eehhhHHHHHHHHHHHcCCCCCHHHHHHh-hhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHH
Confidence 99999999999999999999999 55554 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHhhhhhhc
Q 044370 484 CEELYRQVSNAWKDINEECLNP-TAVPMPLLMRALNLARVIDVVY 527 (554)
Q Consensus 484 ~~~i~~~i~~~~k~ln~e~l~~-~~~p~~~~~~~ln~aR~~~~~Y 527 (554)
++++.++++++|+++++.+.+. ++.|+.+++.+.|.+|.....|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 240 LEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999864 3678999999999999877654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=1.2e-34 Score=298.79 Aligned_cols=252 Identities=16% Similarity=0.092 Sum_probs=220.4
Q ss_pred hHHHHHH-HHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccC-CCHHHHHHH
Q 044370 246 HKKELCE-ISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDVY-GTPEELKLF 322 (554)
Q Consensus 246 hq~El~~-lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~~-gt~eEl~~f 322 (554)
|-.+++. ...|.++.|+. .-+.+|+++..++|+.++.++.|+++..|+ +.++++.|+|++||+||.. +++++++.+
T Consensus 11 ~~~~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~ 89 (303)
T cd00687 11 YVKEAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAG 89 (303)
T ss_pred ChHHHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHH
Confidence 4445555 44699999775 334699999999999888888999999999 7789999999999999987 499999999
Q ss_pred HHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHh
Q 044370 323 TEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMR 402 (554)
Q Consensus 323 t~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~ 402 (554)
++.+.++.......-|....++..++.+++.++...+. .....++++.|.+|+.++++|++|+..|++||++||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~----~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~ 165 (303)
T cd00687 90 VTRLLDILRGDGLDSPDDATPLEFGLADLWRRTLARMS----AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLE 165 (303)
T ss_pred HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 99888874432111146677889999999999865432 23478999999999999999999999999999999999
Q ss_pred hhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHh-hhCCCchhHHHHHHhCCCCHH
Q 044370 403 VALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQ-ERGHAASAVECYMKQHGLSEQ 481 (554)
Q Consensus 403 ~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~-~rG~v~n~V~cyMke~g~S~E 481 (554)
+|+.|+|+.+++.++++++|..+|+++.++ +.+.+++++++.+++|+|||+||+||. +.|+.+|+|.|+|+++|+|.|
T Consensus 166 ~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~ 244 (303)
T cd00687 166 MRRFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLE 244 (303)
T ss_pred HhhhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHH
Confidence 999999999999999999999999999988 778889999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 044370 482 EVCEELYRQVSNAWKDINEECL 503 (554)
Q Consensus 482 eA~~~i~~~i~~~~k~ln~e~l 503 (554)
+|++++.++++++++++.+..-
T Consensus 245 eA~~~~~~~~~~~~~~f~~~~~ 266 (303)
T cd00687 245 EAISVVRDMHNERITQFEELEA 266 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877553
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=7e-31 Score=225.23 Aligned_cols=95 Identities=42% Similarity=0.769 Sum_probs=92.3
Q ss_pred hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhh-cccCCCCCCCCc
Q 044370 460 QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVV-YKEGDGYTHVGN 538 (554)
Q Consensus 460 ~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~-Y~~~Dg~t~~~~ 538 (554)
++|||++|+|+|||||||+|+|||+++++++|+++||+||+++++++++|.+++++++|+||+++++ |++|||||.+++
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 4789999999999999999999999999999999999999999999899999999999999999999 999999999888
Q ss_pred hHHHHHHhhcccccCC
Q 044370 539 EMKQNVAALLIDQVPI 554 (554)
Q Consensus 539 ~~k~~i~~ll~~pi~~ 554 (554)
.+|++|++||++||||
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=9.6e-21 Score=184.46 Aligned_cols=229 Identities=29% Similarity=0.345 Sum_probs=183.2
Q ss_pred hhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHH
Q 044370 279 WILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKE 358 (554)
Q Consensus 279 ~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~ 358 (554)
+.++.++.|+.+..|..++++.+|++++||++|..++..........+ .....|..+...+..+...+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 456667789888999999999999999999999887665554444332 12345667777788888888888643
Q ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchH
Q 044370 359 IANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPK 438 (554)
Q Consensus 359 ~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~ 438 (554)
.. .....++.+.|.+++.|+..|+.|+.. ++||++||+.++..++ +.++..+...+++...|+ ..+.+...+
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 345888999999999999999999876 8899999999999998 455555666666666665 333366788
Q ss_pred HHHHHHHHhHHccCccchhhHhhhC-CCchhHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044370 439 IIRASEIIGRFMDDIKSHKFEQERG-HAASAVECYMKQHGL------------SEQEVCEELYRQVSNAWKDINEECLNP 505 (554)
Q Consensus 439 l~~~~~~i~RL~NDI~S~~kE~~rG-~v~n~V~cyMke~g~------------S~EeA~~~i~~~i~~~~k~ln~e~l~~ 505 (554)
+...++.+.+|.||+.|+.+|.+.| ...|++.++|+++|+ +.++|++++..+++++++.+++.....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999999986 678999999999998 889999999999999999999876643
Q ss_pred CCCCHHHHHHHHHHHh
Q 044370 506 TAVPMPLLMRALNLAR 521 (554)
Q Consensus 506 ~~~p~~~~~~~ln~aR 521 (554)
...+..+++.+.+++|
T Consensus 228 ~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 228 PDVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3356677777777653
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.97 E-value=0.00018 Score=75.60 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=115.4
Q ss_pred CCch-hHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044370 287 PNYS-LARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWS 365 (554)
Q Consensus 287 P~~s-~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~ 365 (554)
|..+ +.++.++=+.++++++||.++.. .+++..|-+-+-. ...- |. ++...+.+.+.++- +.=++
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~Q---~~---p~L~~~~~~L~~~~----~~fgp 144 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQPQ---KH---PLLDGFASLLREMW----RHFGP 144 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------SS---HHHHHHHHHHHHHH----TTS-H
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCCC---CC---HHHHHHHHHHHHHH----HHcch
Confidence 6554 45568899999999999998765 4666666654443 1111 11 34444444444442 22233
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.+-.-+.++.-+++.+..-|++.. +-.|.-..|-..-|.=+|+..+.+...+- ...-|+... ...+-..+--...
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFP-k~~fpe~~~--~~~y~~AIpdl~~ 219 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFP-KALFPEVEY--FIQYTPAIPDLMR 219 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT---TTTS-TTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeecc-cccCChHHH--HHHHHHHHHHHHH
Confidence 556677888999999999998753 33455555666656666666665543321 122222111 1112223344455
Q ss_pred HhHHccCccchhhHhh-hCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 044370 446 IGRFMDDIKSHKFEQE-RGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEE 501 (554)
Q Consensus 446 i~RL~NDI~S~~kE~~-rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e 501 (554)
.+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-++.+++.+-
T Consensus 220 fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~v 276 (376)
T PF06330_consen 220 FINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRV 276 (376)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999987 7888999988887789999999999866666666665554
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.86 E-value=0.00021 Score=73.97 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=119.0
Q ss_pred chhHHH-HHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccH
Q 044370 289 YSLARR-ILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYR 367 (554)
Q Consensus 289 ~s~~Rl-~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 367 (554)
.|..=+ .++-..+.++++||.-|... +.++.|.+-+.. +.+- .- ++...+.+.+..+-... |+.+
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~~--~~m~~f~~dL~~--G~~q-kh-----P~l~~v~~~l~~~lr~f----GpF~ 146 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GREQ-AH-----PWWALVNEHFPNVLRHF----GPFC 146 (357)
T ss_pred CCHHHHHHHHHHHheeeEecccccccc--hHHHHHHHHHhc--CCCC-CC-----cHHHHHHHHHHHHHHHh----hhhh
Confidence 555544 66777788899999977543 355666554443 2111 11 23333333333332211 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHH---
Q 044370 368 VQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASE--- 444 (554)
Q Consensus 368 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~--- 444 (554)
-.-+.++--+++.+.+-|... .+.-|.-.+|-...|.=+|.+-+.++.. -|++.+.-..-+..+.-+..
T Consensus 147 s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi------FPk~~FpE~~~~~qi~~AIp~~~ 218 (357)
T cd00686 147 SLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL------WPKEQFNERSLFLEITSAIAQME 218 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe------cchhhCchHhhHHHhhHHHHHHH
Confidence 555678888999999999763 3447777778888777777665544332 24433322112233222333
Q ss_pred HHhHHccCccchhhHhhh-CCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 044370 445 IIGRFMDDIKSHKFEQER-GHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNP 505 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE~~r-G~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e~l~~ 505 (554)
..+-++|||.||=||--. ++-.|.|.-|.+.+|+|..+|.+.+..-.-.+-+++.+ .|.+
T Consensus 219 ~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~-VLse 279 (357)
T cd00686 219 NWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-VFSD 279 (357)
T ss_pred HHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 345589999999999854 45678888888889999999999887666666666654 3443
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=93.88 E-value=6.6 Score=38.62 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhh-ccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALV-TSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~i-S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
....+.+....++.|...+..|... ..||.++|++.... |+++....+..-...+. -+++..+. ..++-+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQAEA---LKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHHH
Confidence 3556778889999999999988654 57899999999887 66654443332222222 23333332 3567788888
Q ss_pred HhHHccCccchhhHh----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 446 IGRFMDDIKSHKFEQ----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 446 i~RL~NDI~S~~kE~----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..-+.||+..+.... ++|.. +...+++ .+.+.+.++++++.+..
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 899999999876644 45554 5555555 55566666666655544
No 13
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=91.18 E-value=13 Score=37.47 Aligned_cols=198 Identities=19% Similarity=0.226 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCCHHH----HHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044370 290 SLARRILTKVIAMTSIIDDIYDVYGTPEE----LKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWS 365 (554)
Q Consensus 290 s~~Rl~~aK~~~l~~iiDD~~D~~gt~eE----l~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~ 365 (554)
...|-.+.-+-.|.-.+||+-|......+ ++-+-+++...-....+..+....++..++..+.....
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~~--------- 87 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRYG--------- 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCSH---------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHHh---------
Confidence 45566666778888899999997664332 34444444443111111233344466666654433221
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCch-hHHhhcccchHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTK-ETFDWVFSRPKIIRASE 444 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~-ev~e~~~~~~~l~~~~~ 444 (554)
--.+.+.+++.++..... ...++|++|+......+.|....+++-.++... ++ +..+ .....+
T Consensus 88 ----l~~~~l~~li~~~~~dl~---~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~--~~~~~~~-------~a~~lG 151 (267)
T PF00494_consen 88 ----LPREPLLELIDGMEMDLE---FTPYETFADLERYCYYVAGSVGLLLLQLLGAHD--PDEAARD-------AARALG 151 (267)
T ss_dssp ----HHHHHHHHHHHHHHHCTT----S--SSHHHHHHHHHHHTHHHHHHHHHHHHSST--SHHHHHH-------HHHHHH
T ss_pred ----hhHHHHHHHHHHhccccc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc--chhhHHH-------HHHHHH
Confidence 234556777888754433 345789999999998888877766665555421 22 2232 233344
Q ss_pred HHhHHccCccchhhH-hhhCCC--chhHHHHHHhCCCCHHHHHHH----------HHHHHHHHHHHHHhhhcCCCCC-CH
Q 044370 445 IIGRFMDDIKSHKFE-QERGHA--ASAVECYMKQHGLSEQEVCEE----------LYRQVSNAWKDINEECLNPTAV-PM 510 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE-~~rG~v--~n~V~cyMke~g~S~EeA~~~----------i~~~i~~~~k~ln~e~l~~~~~-p~ 510 (554)
...-+.|=+...... ..+|.+ +.- .|.++|+|.++-... +..++..+...+.+..--...+ |.
T Consensus 152 ~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 152 RALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp HHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred HHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 444444444444555 455653 422 467889988765432 3455555554444433222346 44
Q ss_pred HHHHH
Q 044370 511 PLLMR 515 (554)
Q Consensus 511 ~~~~~ 515 (554)
.+.-.
T Consensus 229 ~~~~~ 233 (267)
T PF00494_consen 229 RARPA 233 (267)
T ss_dssp THHHH
T ss_pred hhhHH
Confidence 34433
No 14
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=89.28 E-value=16 Score=36.88 Aligned_cols=121 Identities=15% Similarity=0.035 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.+.....+.+-..+..|... ..||.++|++...--+|.....+....++--..+++..+- ..++-+..+.
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~---l~~~g~~lG~ 183 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEA---LKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 35666777888888888888888654 5799999999987766666443332222111123443332 3667778888
Q ss_pred HhHHccCccchhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 446 IGRFMDDIKSHKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 446 i~RL~NDI~S~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..-+.||+..+.... ..|.. |.+.+|.. .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 888899987765432 23333 45444443 45566666767666554
No 15
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=88.60 E-value=30 Score=35.08 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCHHHHH----HHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 044370 291 LARRILTKVIAMTSIIDDIYDVYGTPEELK----LFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSY 366 (554)
Q Consensus 291 ~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~----~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~ 366 (554)
..|-.+.-+-.+.-.+||+-|..+++++-+ -+-+++..-. ..-|. .++..++..++... +.
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~----~g~~~--~pv~~al~~~~~~~--------~l- 82 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLY----AGAPS--HPVARALADPARRF--------DL- 82 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHh----CCCCC--ChHHHHHHHHHHHc--------CC-
Confidence 455555667777888999999855443322 2222222211 11121 24555555444332 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH-
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI- 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~- 445 (554)
-++.+.+++.++-.... ...++|++|+..+...+.|.-..+++-.+ |.. ++..... ....+.
T Consensus 83 ----~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll--g~~-~~~~~~~-------a~~lG~A 145 (266)
T TIGR03465 83 ----PQEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGAVGRLSARIF--GAT-DARTLEY-------AHHLGRA 145 (266)
T ss_pred ----CHHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCC-ChhHHHH-------HHHHHHH
Confidence 13446777777754433 34578999988888877766655554444 321 1222222 222233
Q ss_pred --HhHHccCccchhhHhhhCCC--chhHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH
Q 044370 446 --IGRFMDDIKSHKFEQERGHA--ASAVECYMKQHGLSEQ---------EVCEELYRQVSNAWKDINEECLNPTAVPMPL 512 (554)
Q Consensus 446 --i~RL~NDI~S~~kE~~rG~v--~n~V~cyMke~g~S~E---------eA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~ 512 (554)
++.++-|+. ...++|.+ +- =-|.++|+|.+ ...+-+..+++.+..-+.+..--...+|...
T Consensus 146 lqltnilRdv~---eD~~~gR~ylP~---~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~ 219 (266)
T TIGR03465 146 LQLTNILRDVG---EDARRGRIYLPA---EELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRA 219 (266)
T ss_pred HHHHHHHHHhH---HHHhCCCeecCH---HHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhh
Confidence 333334543 34456754 22 23577898876 3344455666666655444332224577544
Q ss_pred HHHHH
Q 044370 513 LMRAL 517 (554)
Q Consensus 513 ~~~~l 517 (554)
...++
T Consensus 220 ~~~~~ 224 (266)
T TIGR03465 220 QRAAR 224 (266)
T ss_pred hHHHH
Confidence 43333
No 16
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=83.18 E-value=62 Score=33.96 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.+.....+.+-+.+..|... .-+|+++|++.-..=+|..+..++..-++--..+++..+. ..++-+..++
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 34666777788888888877776533 3479999999766555544433221111111245555544 3666778888
Q ss_pred HhHHccCccchh
Q 044370 446 IGRFMDDIKSHK 457 (554)
Q Consensus 446 i~RL~NDI~S~~ 457 (554)
..-+.||+..+.
T Consensus 209 aFQi~DDild~~ 220 (322)
T TIGR02749 209 AFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHhccCC
Confidence 899999998875
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=76.94 E-value=89 Score=31.68 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=64.3
Q ss_pred hhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccC-CCHHH----HHHHHHHHHhcCCcccccCchhHHHHHHHHHH
Q 044370 276 CYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVY-GTPEE----LKLFTEVIERWDESSMDQLPEYMQTFFGALLD 350 (554)
Q Consensus 276 ~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~-gt~eE----l~~ft~av~rWd~~~~~~lpe~mk~~~~al~~ 350 (554)
+|+|+.-.. | ...|..+.-+-.|.=.+||+-|.. ++.++ ++.+-+.++.- ...-|. .++..++..
T Consensus 7 sf~~a~~~l--p--~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~----~~g~~~--~pv~~aL~~ 76 (266)
T TIGR03464 7 NFPVASLLL--P--ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAI----YSGEPA--APVFVALAR 76 (266)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH----hCCCCC--ChHHHHHHH
Confidence 455454433 3 344555556666778899999975 44443 22232333221 111121 245666665
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh
Q 044370 351 LYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG 420 (554)
Q Consensus 351 ~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~ 420 (554)
++.+. +.. ++.+.+++.++.... .....+|++|+..+...++|+-..+++-.++
T Consensus 77 ~~~~~--------~l~-----~~~~~~li~~~~~Dl---~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g 130 (266)
T TIGR03464 77 TVQRH--------GLP-----IEPFLDLLDAFRQDV---VVTRYATWAELLDYCRYSANPVGRLVLDLYG 130 (266)
T ss_pred HHHHc--------CCC-----hHHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 55432 111 234556666664332 2345679999999988887776665555444
No 18
>PLN02857 octaprenyl-diphosphate synthase
Probab=75.76 E-value=1e+02 Score=33.68 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.+...+++.+-+.+..+.. +.-+|.++|++.-..=+|..+..++..-++--..+++..+. ..++-+..++
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~---l~~fG~~LGi 302 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ---MYEYGKNLGL 302 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 3466677778888888777777754 44579999999866555544433221111111245555544 3666777888
Q ss_pred HhHHccCccchhh
Q 044370 446 IGRFMDDIKSHKF 458 (554)
Q Consensus 446 i~RL~NDI~S~~k 458 (554)
..-+.||+..+..
T Consensus 303 AFQI~DDiLD~~~ 315 (416)
T PLN02857 303 AFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHhhcC
Confidence 8889999998763
No 19
>PLN02890 geranyl diphosphate synthase
Probab=75.36 E-value=91 Score=34.18 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.++..+.++....+.+-+.+..|.. ...+|+++|++.-..-+|..+..++..-++--..+++..+.+ .++-+..++
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 4567788889999999998998864 346899999987655555444333221111112456655543 566777888
Q ss_pred HhHHccCccchhhH
Q 044370 446 IGRFMDDIKSHKFE 459 (554)
Q Consensus 446 i~RL~NDI~S~~kE 459 (554)
..-+.||+..+.-.
T Consensus 303 AFQI~DDiLD~~g~ 316 (422)
T PLN02890 303 AFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHhhcCC
Confidence 88899999987543
No 20
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=72.03 E-value=1.1e+02 Score=30.69 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCCH-----HHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 044370 290 SLARRILTKVIAMTSIIDDIYDVYGTP-----EELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGW 364 (554)
Q Consensus 290 s~~Rl~~aK~~~l~~iiDD~~D~~gt~-----eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~ 364 (554)
...|-.+.-+-.|.-.+||+-|..... ..|+-+-+++..-... ..|. .++..++..+..+. +
T Consensus 23 ~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~~~--~pv~~al~~~~~~~--------~ 89 (265)
T cd00683 23 PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GAPT--HPVLRALADLARRY--------G 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CCCC--ChHHHHHHHHHHHc--------C
Confidence 345555556677777899999975532 2233333443332110 1122 25566666554421 1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHH
Q 044370 365 SYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 365 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
. -++.+.+++.++..... ....||++|...+...+.|.-..+++-.++.+ -+++... .....+
T Consensus 90 l-----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~--~~~~~~~-------~A~~lG 152 (265)
T cd00683 90 I-----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS--SDEAALE-------RARALG 152 (265)
T ss_pred C-----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC--CChHHHH-------HHHHHH
Confidence 1 13556777888765544 35678998888887777766655554444321 1222222 222333
Q ss_pred HHhHHccCccchhhHhhhCCC--chhHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 044370 445 IIGRFMDDIKSHKFEQERGHA--ASAVECYMKQHGLSEQEV---------CEELYRQVSNAWKDINEECLNPTAVPMPLL 513 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE~~rG~v--~n~V~cyMke~g~S~EeA---------~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~ 513 (554)
...-|.|=+.......++|-+ +.- -|.++|+|.++- ..-+..+++.+.+-+....-....+|....
T Consensus 153 ~AlqltnilRdv~eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 229 (265)
T cd00683 153 LALQLTNILRDVGEDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229 (265)
T ss_pred HHHHHHHHHHHHHHHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhH
Confidence 323333322222333455643 322 367788887553 233455555555444443322345775444
Q ss_pred HHHHHHH
Q 044370 514 MRALNLA 520 (554)
Q Consensus 514 ~~~ln~a 520 (554)
-.++-++
T Consensus 230 ~~~~~~~ 236 (265)
T cd00683 230 FCVRAAA 236 (265)
T ss_pred HHHHHHH
Confidence 4444343
No 21
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=69.30 E-value=1.2e+02 Score=31.73 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.+.....+.+-..+-.+.... +|.++|+.+-..=+|.....+...-++--..+++..+.+ ...-+..++
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhhH
Confidence 356677888899999988888876555 999999999666555554433222111112235555553 667788888
Q ss_pred HhHHccCccchhhHh-hhCCC---------chhHHHHHHhCCC
Q 044370 446 IGRFMDDIKSHKFEQ-ERGHA---------ASAVECYMKQHGL 478 (554)
Q Consensus 446 i~RL~NDI~S~~kE~-~rG~v---------~n~V~cyMke~g~ 478 (554)
..-+.|||..+.-+. .-|+. .+...++.-+.+.
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~ 251 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKAN 251 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCc
Confidence 999999999887642 23332 3666677666543
No 22
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=64.66 E-value=1.9e+02 Score=30.31 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcC-CCCchhHHhhcccchHHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMD-NIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g-~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
....+.++....+.+-..+..|.. +.-+|.++|++.-..-+|..+..++ ..|.- -..+++..+. ..++-+..++
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~-~~ga~~ag~~~~~~~~---l~~~g~~lG~ 204 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASC-QLGAIASGANEAIVKK---LYWFGYYVGM 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 456677888888888888887743 3457999999887666655543332 22210 0234444443 2556677888
Q ss_pred HhHHccCccchhh
Q 044370 446 IGRFMDDIKSHKF 458 (554)
Q Consensus 446 i~RL~NDI~S~~k 458 (554)
..-+.||+..+..
T Consensus 205 aFQI~DDilD~~~ 217 (319)
T TIGR02748 205 SYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHccC
Confidence 8889999987653
No 23
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=59.71 E-value=7.6 Score=36.46 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=25.9
Q ss_pred hhCCCchhHHHHHHhC-CCCHHHHHHHHHHH
Q 044370 461 ERGHAASAVECYMKQH-GLSEQEVCEELYRQ 490 (554)
Q Consensus 461 ~rG~v~n~V~cyMke~-g~S~EeA~~~i~~~ 490 (554)
.||..+..|.||+-++ +.|.++|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4667789999998887 99999999999873
No 24
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=52.34 E-value=3e+02 Score=28.86 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhc-CCCCchhHHhhcccchHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM-DNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
.....+.++....+.+-..+..|.. +.-+|.++|+.....-+|..+..++ ..|. --..+++..+. ...+-+..+
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG 204 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAAA-QCSGILAGCTPEQEKG---LQDYGRYLG 204 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 3466677788888888888887753 3357999999987765555543332 2221 01234444433 356677788
Q ss_pred HHhHHccCccchhh
Q 044370 445 IIGRFMDDIKSHKF 458 (554)
Q Consensus 445 ~i~RL~NDI~S~~k 458 (554)
...-+.||+..+..
T Consensus 205 ~aFQi~DD~ld~~~ 218 (323)
T PRK10888 205 TAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHhhcccC
Confidence 88888999988753
No 25
>PLN02632 phytoene synthase
Probab=48.49 E-value=3.5e+02 Score=28.51 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCH----HHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccH
Q 044370 292 ARRILTKVIAMTSIIDDIYDVYGTP----EELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYR 367 (554)
Q Consensus 292 ~Rl~~aK~~~l~~iiDD~~D~~gt~----eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 367 (554)
.|..+.-+-.|.-.+||+-|..... ..++..-+.+..- .+.-|. .++..++.++..+.. .
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~----~~g~~~--~pv~~aL~~~~~~~~--------L-- 137 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDL----FDGRPY--DMLDAALADTVSKFP--------L-- 137 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHH----hCCCCC--ChHHHHHHHHHHHCC--------C--
Confidence 4444456667777899999965432 2233333333221 111122 145566665554331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHh
Q 044370 368 VQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIG 447 (554)
Q Consensus 368 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~ 447 (554)
-++.+.+++.++..... ....+|++|+..+...+.|.--.+++..++.....+. ..++ ..+.-...+.-.
T Consensus 138 ---~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~-~~~~---~~~~A~~lG~Al 207 (334)
T PLN02632 138 ---DIQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKA-STES---VYNAALALGIAN 207 (334)
T ss_pred ---ChHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCcccc-chHH---HHHHHHHHHHHH
Confidence 12445677777754332 3457799999888777776665555544443221110 0011 011122223322
Q ss_pred HHccCccchhhHhhhCCC--chhHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 044370 448 RFMDDIKSHKFEQERGHA--ASAVECYMKQHGLSEQEV---------CEELYRQVSNAWKDINEECLNPTAVPMPLL 513 (554)
Q Consensus 448 RL~NDI~S~~kE~~rG~v--~n~V~cyMke~g~S~EeA---------~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~ 513 (554)
-|.|=+........+|.+ +- =.|.++|+|.++- ..-+..++..+..-+.+..--...+|..+.
T Consensus 208 QltNILRDv~eD~~~GRvYLP~---e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 208 QLTNILRDVGEDARRGRVYLPQ---DELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred HHHHHHHHHHHHHhCCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 333322222344566754 21 2367889998772 233444555444433332211234776544
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=46.77 E-value=18 Score=35.09 Aligned_cols=46 Identities=26% Similarity=0.249 Sum_probs=31.7
Q ss_pred HhHHccCccchhhHhhhCC-CchhHHHHHHhCCCCHHHHHHHHHHHH
Q 044370 446 IGRFMDDIKSHKFEQERGH-AASAVECYMKQHGLSEQEVCEELYRQV 491 (554)
Q Consensus 446 i~RL~NDI~S~~kE~~rG~-v~n~V~cyMke~g~S~EeA~~~i~~~i 491 (554)
.-.|--++..+++..+.-+ +.-+=.+.|+++|+|++||.++++++-
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344455666666554332 344455799999999999999999863
No 27
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=45.57 E-value=22 Score=27.21 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCchhHHHHHHhCCCCHHHHHHHHHHHHH
Q 044370 464 HAASAVECYMKQHGLSEQEVCEELYRQVS 492 (554)
Q Consensus 464 ~v~n~V~cyMke~g~S~EeA~~~i~~~i~ 492 (554)
-+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 14 ~I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 14 VIEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34567889999999999999999988544
No 28
>CHL00151 preA prenyl transferase; Reviewed
Probab=45.03 E-value=3.9e+02 Score=27.99 Aligned_cols=86 Identities=9% Similarity=0.042 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHHhhcccchHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
....+.+....++.+-+.+..|.. ..-+|.++|+..-..=+|.....++. -...| .+++..+. ..++-+..+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456677788888888777766643 33479999999744444433332221 12223 34444443 356777888
Q ss_pred HHhHHccCccchhh
Q 044370 445 IIGRFMDDIKSHKF 458 (554)
Q Consensus 445 ~i~RL~NDI~S~~k 458 (554)
...-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 88889999988754
No 29
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=38.24 E-value=5.1e+02 Score=27.46 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 044370 416 VSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAW 495 (554)
Q Consensus 416 ~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~ 495 (554)
+.-++..+.++++..+.+. ..-.-+.+-+-.|++=....+.+...|+. |.|..| -+.+++.+.+.-.++++-
T Consensus 197 L~a~A~~p~~t~~~a~~i~--~aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY-----~~~~~~~~Rl~~f~~~A~ 268 (330)
T PF10776_consen 197 LFAYAADPDLTPEDAEKIK--DAYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYY-----PDEEEMEERLKYFVEKAL 268 (330)
T ss_pred HHHHHcCCCCCHHHHHHHH--HcccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeC-----CCHHHHHHHHHHHHHHHH
Confidence 3334556778887776542 22233455666677777776767777776 898754 367899999999999888
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCC
Q 044370 496 KDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDG 532 (554)
Q Consensus 496 k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg 532 (554)
+...+ +|.+--.+.++-+ +--||-.++.
T Consensus 269 ~~~~~-------Lp~~~fHr~iv~G--Lla~YLSD~K 296 (330)
T PF10776_consen 269 EQASR-------LPYPKFHRMIVRG--LLAMYLSDPK 296 (330)
T ss_pred HHHHh-------CCCchHHHHHHHH--HHHHHhCCHh
Confidence 77655 6654444443333 4446866554
No 30
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=33.75 E-value=5e+02 Score=26.01 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=42.4
Q ss_pred CCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhH
Q 044370 392 NYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFE 459 (554)
Q Consensus 392 g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE 459 (554)
+..+|.++|++.-..-+|..+..++..-++=-..+++..+. ..++-+..+...-+.||+..+...
T Consensus 130 ~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~afQi~DD~~d~~~~ 194 (260)
T PF00348_consen 130 DKDPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEA---LREFGRHLGIAFQIRDDLLDLFGD 194 (260)
T ss_dssp TSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred cccccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHhhhhhhhhccCc
Confidence 34789999999977766665443332221111234445544 367788888899999999888753
No 31
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=30.97 E-value=1.6e+02 Score=26.22 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=44.8
Q ss_pred hhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCCCC----CCch--HHHHHHHHHhhhcCcccccccccceeccccc-c
Q 044370 71 LNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDT----EDDL--YRISLRFRLLRQHGYNVSCDKFNMFKDDKGN-F 143 (554)
Q Consensus 71 l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~----~~dl--~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~-F 143 (554)
-.+|+.|++|||++.- ...|-++-+. .+-.+. ...| -.+|++-|.||.+| +|.----++ +++ |. .
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~-~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-kGK-GRPi 85 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKG-DEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-KGK-GRPI 85 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcC-cchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-cCC-CCCc
Confidence 4689999999999953 2333222221 000000 1122 36899999999999 665444455 433 43 2
Q ss_pred cc-ccccchHHHHHHHh
Q 044370 144 KE-SLASDALGMLSLYE 159 (554)
Q Consensus 144 ~~-~~~~d~~glL~Lye 159 (554)
|. .|+.+...+++-++
T Consensus 86 k~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 86 KLYRLTVPFDEIVSEIE 102 (124)
T ss_pred eEEEecCcHHHHHHHHH
Confidence 32 33555555555443
No 32
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=28.26 E-value=47 Score=22.12 Aligned_cols=18 Identities=61% Similarity=0.916 Sum_probs=14.1
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 044370 471 CYMKQHGLSEQEVCEELY 488 (554)
Q Consensus 471 cyMke~g~S~EeA~~~i~ 488 (554)
-|.++||+|.||-.+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 588999999998665543
No 33
>smart00463 SMR Small MutS-related domain.
Probab=25.76 E-value=81 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 044370 476 HGLSEQEVCEELYRQVSNAWKDIN 499 (554)
Q Consensus 476 ~g~S~EeA~~~i~~~i~~~~k~ln 499 (554)
||++.++|+..+...++++++.-.
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~~ 30 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKGL 30 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999887643
No 34
>PRK10581 geranyltranstransferase; Provisional
Probab=24.81 E-value=5.3e+02 Score=26.74 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHH--HHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTV--SFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|.. ..+|.++|++.-..=+|.....++ .-+..|. -+++..+. ..++-+..++..-+.||+
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAVRLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346677666777743 468999999876543333333222 1122232 12233443 356777788888889999
Q ss_pred cchhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+... ...|.. +.+.++- .|.|.+.+.+.++++.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~~------~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCC-CHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 987432 222332 4554442 478888888888888776654
No 35
>smart00400 ZnF_CHCC zinc finger.
Probab=24.64 E-value=83 Score=23.78 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCchhHHHHHHhCCCCHHHHHHHH
Q 044370 463 GHAASAVECYMKQHGLSEQEVCEEL 487 (554)
Q Consensus 463 G~v~n~V~cyMke~g~S~EeA~~~i 487 (554)
|.-.+.|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 3345789999998899999998875
No 36
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=1.2e+02 Score=30.79 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=40.5
Q ss_pred ccccccccccccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhhcCCCcHHHHHHHHcc
Q 044370 138 DDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALR 202 (554)
Q Consensus 138 d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~ 202 (554)
+.+|-|....+-|+||-..|-++-- .... +-|=.|..||++||.. .+-++.|++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlNd------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLND------ESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcCC------CCChHHHHHHhc
Confidence 6789998888899999999988743 2222 3566799999999843 234556666553
No 37
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=23.92 E-value=85 Score=31.10 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCC--cchhHHHHHHHhCCccc--cHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 044370 45 ARDLKELKALKEEVGRKLLATAGP--IQLNLIDAIQRLGVGYH--FERELEQALQHLYNEKYSDDDTEDDLYRISLRFRL 120 (554)
Q Consensus 45 ~~~~~~~~~lk~~v~~~l~~~~~~--~~l~liD~lqrLGi~~h--F~~EI~~~L~~~~~~~~~~~~~~~dl~~~al~FRl 120 (554)
+..+.+.++++.-+|.|..+..+. ....++++|+.||=..- .+.+|..+|...-. -+..++=.+-.
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~----------~l~El~~~~~~ 81 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV----------FTKELAALFKN 81 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 456778899999999998654443 78999999999993221 23357777644321 14445555667
Q ss_pred hhhcCcccccccccceecc
Q 044370 121 LRQHGYNVSCDKFNMFKDD 139 (554)
Q Consensus 121 LR~~Gy~vS~dvf~~F~d~ 139 (554)
|++|=-++-...+.+|..+
T Consensus 82 L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 82 LMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666666677777644
No 38
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=22.90 E-value=84 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044370 476 HGLSEQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 476 ~g~S~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
||++.++|+..+...++++++.-...+
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~~ 30 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIREL 30 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEE
Confidence 799999999999999999986644433
No 39
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=22.73 E-value=85 Score=28.27 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 044370 469 VECYMKQHGLSEQEVCEELYR 489 (554)
Q Consensus 469 V~cyMke~g~S~EeA~~~i~~ 489 (554)
|.+.|.|.|+|.++|++.+..
T Consensus 88 IkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 88 IKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 788999999999999987753
No 40
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=22.39 E-value=1e+02 Score=31.55 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC-CC-cchhHHHHHHHhCCccccHHHHHHHHHHH-------HhhcCCCCCCCCchHHHHH
Q 044370 46 RDLKELKALKEEVGRKLLATA-GP-IQLNLIDAIQRLGVGYHFERELEQALQHL-------YNEKYSDDDTEDDLYRISL 116 (554)
Q Consensus 46 ~~~~~~~~lk~~v~~~l~~~~-~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~-------~~~~~~~~~~~~dl~~~al 116 (554)
|.+.-+=+| ..||+||.++. |- ..|.+|-.|.|.-+=--.--|=-.+|+.+ |+.+.. .--..-||
T Consensus 78 WFKQIifel-DsvR~~l~~~v~DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL~-----PASGFQSL 151 (399)
T KOG3906|consen 78 WFKQIIFEL-DSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYLT-----PASGFQSL 151 (399)
T ss_pred HHHHHHHhh-HHHHHHhcchhhcchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHhcC-----ccccchhh
Confidence 544333333 57999998653 65 77888877777542111111111222222 222211 00123489
Q ss_pred HHHHhhh---------cCccc--ccccccceeccccccccccccchHHHHHHHhhhccCCCC
Q 044370 117 RFRLLRQ---------HGYNV--SCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHG 167 (554)
Q Consensus 117 ~FRlLR~---------~Gy~v--S~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~g 167 (554)
.||||-- -.|+- =.|||+ |++-+-- ..+..-+.||+|-|+=--++||
T Consensus 152 QFRllENKlGVlqe~Rv~YN~qhY~dvF~---dee~~~l-~~sE~eksLLeLve~WLERTPG 209 (399)
T KOG3906|consen 152 QFRLLENKLGVLQERRVKYNAQHYKDVFN---DEELKTL-NVSEEEKSLLELVESWLERTPG 209 (399)
T ss_pred hHHHHhhhhhhhhhhhccccHHHhhhccC---chhhHhh-hcccccchHHHHHHHHHhcCCC
Confidence 9999842 12221 135544 4432211 1256778999999988777776
No 41
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=1.9e+02 Score=29.64 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=47.8
Q ss_pred chhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HhhhcCCCCCCHHHHHHHHHHHh
Q 044370 455 SHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDI----------NEECLNPTAVPMPLLMRALNLAR 521 (554)
Q Consensus 455 S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~l----------n~e~l~~~~~p~~~~~~~ln~aR 521 (554)
.|++|++ .++.++..+...|.+.++|.+.+.--+.+.+=.+ +.+.|.+.++|...+..+.++||
T Consensus 96 ~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~ 169 (269)
T COG1093 96 EWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIAR 169 (269)
T ss_pred HHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHH
Confidence 4566664 4678888898899999999999987777665433 23334445688899999999998
Done!