Query 044370
Match_columns 554
No_of_seqs 233 out of 905
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 2E-168 7E-173 1372.1 51.8 537 13-554 16-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1E-167 5E-172 1364.6 52.1 535 14-554 12-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 5E-166 2E-170 1355.4 48.9 531 17-553 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-160 4E-165 1319.7 52.7 535 18-553 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 8E-161 3E-165 1320.6 45.4 536 17-553 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 8E-160 3E-164 1316.3 44.1 534 15-553 31-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 7E-143 2E-147 1217.5 45.5 487 67-554 297-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 3E-142 9E-147 1205.8 49.2 484 67-554 245-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-142 7E-147 1209.3 48.1 484 67-553 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 1E-107 5E-112 913.8 37.5 449 48-553 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.5E-51 5.3E-56 428.6 20.7 255 239-502 11-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.3E-49 7.8E-54 405.4 20.5 243 244-502 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 4.1E-48 1.4E-52 400.0 20.3 249 238-502 20-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 6E-46 2E-50 393.8 20.6 249 246-502 58-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 2.8E-33 9.7E-38 299.9 20.6 249 246-502 127-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 2.3E-18 8E-23 180.9 17.2 243 252-521 34-293 (374)
17 3sdr_A Alpha-bisabolene syntha 97.1 0.00014 4.9E-09 83.1 2.3 49 14-63 20-68 (817)
18 3lmd_A Geranylgeranyl pyrophos 85.8 7.2 0.00025 40.2 12.7 103 366-476 160-275 (360)
19 3ipi_A Geranyltranstransferase 85.3 4.8 0.00016 40.3 10.8 141 367-522 128-278 (295)
20 3acx_A Dehydrosqualene synthas 82.5 40 0.0014 33.2 19.7 191 291-511 38-242 (293)
21 4hd1_A Squalene synthase HPNC; 82.2 41 0.0014 33.2 19.5 155 293-482 41-199 (294)
22 3rmg_A Octaprenyl-diphosphate 80.0 28 0.00094 35.3 14.2 86 366-457 133-220 (334)
23 3oyr_A Trans-isoprenyl diphosp 77.6 43 0.0015 34.1 14.9 88 366-458 151-239 (345)
24 3mzv_A Decaprenyl diphosphate 76.6 63 0.0021 32.8 15.7 106 366-476 139-255 (341)
25 1rtr_A Geranyltranstransferase 73.1 18 0.00061 36.2 10.4 111 376-500 148-271 (301)
26 1wy0_A Geranylgeranyl pyrophos 71.7 38 0.0013 34.3 12.6 103 367-476 138-253 (342)
27 3ts7_A Geranyltranstransferase 70.6 39 0.0013 34.2 12.3 111 376-499 158-281 (324)
28 3p8r_A Geranyltranstransferase 68.2 26 0.00088 35.0 10.3 112 376-500 158-282 (302)
29 2ftz_A Geranyltranstransferase 68.1 54 0.0018 32.4 12.5 120 367-500 135-264 (284)
30 3pko_A Geranylgeranyl pyrophos 67.2 69 0.0024 32.3 13.4 103 367-475 144-258 (334)
31 3lsn_A Geranyltranstransferase 66.3 45 0.0016 33.3 11.7 110 378-500 154-276 (304)
32 3p8l_A Geranyltranstransferase 65.9 38 0.0013 33.8 11.0 109 377-500 157-279 (302)
33 3m0g_A Farnesyl diphosphate sy 65.6 26 0.00089 34.9 9.7 110 376-500 147-269 (297)
34 2h8o_A Geranyltranstransferase 63.4 46 0.0016 33.8 11.2 111 376-500 192-315 (335)
35 4dhd_A Polyprenyl synthetase; 61.6 50 0.0017 33.7 11.2 87 367-457 133-231 (358)
36 3lom_A Geranyltranstransferase 60.3 55 0.0019 32.8 11.0 113 376-499 158-282 (313)
37 4f62_A Geranyltranstransferase 58.0 45 0.0015 33.6 9.9 111 377-500 152-275 (317)
38 3apz_A Geranyl diphosphate syn 57.6 1.2E+02 0.004 30.7 13.2 87 366-458 153-241 (348)
39 3pde_A Farnesyl-diphosphate sy 53.9 69 0.0024 32.0 10.5 110 377-500 156-278 (309)
40 1wmw_A Geranylgeranyl diphosph 53.6 1.8E+02 0.0063 29.0 14.3 102 367-476 131-246 (330)
41 3nf2_A Putative polyprenyl syn 51.2 90 0.0031 31.7 11.0 86 367-457 144-230 (352)
42 1rqj_A Geranyltranstransferase 51.2 93 0.0032 30.8 10.9 112 376-500 152-276 (299)
43 3uca_A Geranyltranstransferase 50.7 85 0.0029 31.6 10.6 111 376-500 180-304 (324)
44 3npk_A Geranyltranstransferase 49.5 1.4E+02 0.0046 29.6 11.7 113 375-500 144-266 (291)
45 3llw_A Geranyltranstransferase 48.6 60 0.002 32.5 9.0 112 376-500 159-281 (311)
46 2j1p_A Geranylgeranyl pyrophos 41.6 43 0.0015 33.2 6.6 108 377-500 161-272 (293)
47 2qis_A Farnesyl pyrophosphate 37.5 1.6E+02 0.0055 30.1 10.4 105 367-476 177-298 (374)
48 1uby_A FPS, farnesyl diphospha 36.7 1.4E+02 0.0048 30.4 9.8 105 367-476 170-291 (367)
49 2her_A Fragment, farnesyl pyro 35.6 1.8E+02 0.0063 29.7 10.4 86 367-457 169-260 (368)
50 1yhl_A Farnesyl pyrophosphate 34.9 1.4E+02 0.0047 30.3 9.4 105 367-476 152-284 (362)
51 2azj_A Geranylgeranyl pyrophos 33.6 2.1E+02 0.007 28.2 10.1 117 367-500 136-258 (289)
52 1pd3_A Nonstructural protein N 33.2 32 0.0011 25.1 2.9 32 49-80 16-48 (58)
53 3tc1_A Octaprenyl pyrophosphat 33.1 3.7E+02 0.013 26.6 13.0 100 367-476 123-235 (315)
54 3s9v_A Abietadiene synthase, c 29.6 21 0.00072 40.6 2.2 41 23-63 5-45 (785)
55 2e8v_A Geranylgeranyl pyrophos 28.7 1.2E+02 0.0041 30.6 7.6 86 367-458 132-221 (340)
56 1v4e_A Octoprenyl-diphosphate 28.6 2.7E+02 0.0093 27.4 10.0 84 366-459 127-212 (299)
57 2q80_A Geranylgeranyl pyrophos 28.0 2.9E+02 0.01 27.1 10.2 84 366-457 111-195 (301)
58 3aqb_B Component B of hexapren 26.7 1.6E+02 0.0055 29.3 8.1 89 366-458 130-218 (325)
59 3kra_B Geranyl diphosphate syn 25.7 95 0.0032 30.4 6.0 70 377-453 150-221 (274)
60 3fau_A NEDD4-binding protein 2 21.8 71 0.0024 25.0 3.4 23 476-498 6-28 (82)
61 2q58_A Fragment, farnesyl pyro 20.8 93 0.0032 31.8 5.0 88 368-458 170-261 (368)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=2.1e-168 Score=1372.14 Aligned_cols=537 Identities=55% Similarity=0.954 Sum_probs=498.5
Q ss_pred ccccccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhc-cCCC-cchhHHHHHHHhCCccccHHHH
Q 044370 13 AKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLA-TAGP-IQLNLIDAIQRLGVGYHFEREL 90 (554)
Q Consensus 13 ~~~~~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~-~~l~liD~lqrLGi~~hF~~EI 90 (554)
++.++.||+||||||+|||+||++ +.. ...+.+.+|+++||++||+||.+ ..|+ ++|+|||+||||||+|||++||
T Consensus 16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI 93 (554)
T 3g4d_A 16 SNKDEMRPKADFQPSIWGDLFLNC-PDK-NIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEI 93 (554)
T ss_dssp ---------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHH
T ss_pred ccCCCCCCCCCCCccccccccccC-CCc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 345568999999999999999997 422 33567899999999999999975 4688 9999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchH
Q 044370 91 EQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDI 170 (554)
Q Consensus 91 ~~~L~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~i 170 (554)
+++|++||++ + ..+..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|
T Consensus 94 ~~~L~~i~~~--~-~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~i 170 (554)
T 3g4d_A 94 EDELENIYHN--N-NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDI 170 (554)
T ss_dssp HHHHHHHHHS--C-CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHHhc--c-CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHH
Confidence 9999999986 1 223379999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhcCCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHHH
Q 044370 171 LDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKEL 250 (554)
Q Consensus 171 Ldea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 250 (554)
||||+.||++||++.++.++++|+++|+|||++|+|+++||+|||+||++|++++++|++||||||||||+||++||+||
T Consensus 171 LdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El 250 (554)
T 3g4d_A 171 LDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKEL 250 (554)
T ss_dssp HHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999887778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcC
Q 044370 251 CEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWD 330 (554)
Q Consensus 251 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd 330 (554)
++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||
T Consensus 251 ~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD 330 (554)
T 3g4d_A 251 SEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD 330 (554)
T ss_dssp HHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccch
Q 044370 331 ESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGY 410 (554)
Q Consensus 331 ~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~ 410 (554)
++++++||+|||+||.+++++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus 331 ~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~ 410 (554)
T 3g4d_A 331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGY 410 (554)
T ss_dssp GGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHH
Q 044370 411 TMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQ 490 (554)
Q Consensus 411 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~ 490 (554)
++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus 411 ~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~ 490 (554)
T 3g4d_A 411 AMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKH 490 (554)
T ss_dssp HHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccCC
Q 044370 491 VSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554 (554)
Q Consensus 491 i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 554 (554)
|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 491 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 9999999999999988999999999999999999999999999999878999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.4e-167 Score=1364.62 Aligned_cols=535 Identities=49% Similarity=0.873 Sum_probs=508.9
Q ss_pred cccccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhc-cCCC-cchhHHHHHHHhCCccccHHHHH
Q 044370 14 KSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLA-TAGP-IQLNLIDAIQRLGVGYHFERELE 91 (554)
Q Consensus 14 ~~~~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~-~~l~liD~lqrLGi~~hF~~EI~ 91 (554)
+.++.||+||||||+|||+||++.+.. ...+.+.+|+++||++||+||.+ ..++ ++|+|||+||||||+|||++||+
T Consensus 12 ~~~~~R~~~~~~ps~W~d~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~ 90 (550)
T 3m00_A 12 EEEIVRPVADFSPSLWGDQFLSFSIKN-QVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEID 90 (550)
T ss_dssp ----CCCCCCCCCCTTTTTTSCCCCCH-HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHH
T ss_pred ccccCCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 456689999999999999999975432 23567899999999999999975 4688 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchHH
Q 044370 92 QALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDIL 171 (554)
Q Consensus 92 ~~L~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iL 171 (554)
++|++||++|.+ ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+||
T Consensus 91 ~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iL 166 (550)
T 3m00_A 91 DILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 166 (550)
T ss_dssp HHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGG
T ss_pred HHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHH
Confidence 999999999843 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhcCCCcHHHHHHHHccCccccCcchhhHhhhHH-hhcCCccccHHHHHHHhhhhhHHhhhhHHHH
Q 044370 172 DEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYIS-IYQDDASHYKALLTLAKLDFNLVQSLHKKEL 250 (554)
Q Consensus 172 dea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~-~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 250 (554)
|||+.||++||++.++.++++|+++|+|||++|+|+++||+|||+||+ +|++++++|++||||||||||+||++||+||
T Consensus 167 deA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL 246 (550)
T 3m00_A 167 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 246 (550)
T ss_dssp TTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999988777888999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcC
Q 044370 251 CEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWD 330 (554)
Q Consensus 251 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd 330 (554)
++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||
T Consensus 247 ~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD 326 (550)
T 3m00_A 247 AQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD 326 (550)
T ss_dssp HHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccch
Q 044370 331 ESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGY 410 (554)
Q Consensus 331 ~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~ 410 (554)
++++++||+|||+||.+++++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus 327 ~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~ 406 (550)
T 3m00_A 327 INEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 406 (550)
T ss_dssp GGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHH
Q 044370 411 TMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQ 490 (554)
Q Consensus 411 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~ 490 (554)
+++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++|
T Consensus 407 ~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~ 485 (550)
T 3m00_A 407 YLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 485 (550)
T ss_dssp HHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999998877 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCCCchHHHHHHhhcccccCC
Q 044370 491 VSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAALLIDQVPI 554 (554)
Q Consensus 491 i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~~ 554 (554)
|+++||+||+++++++++|++|+++++|+||++++||+++ ||||.|+..||++|++||++|||+
T Consensus 486 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999988999999999999999999999998 999999778999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.6e-166 Score=1355.44 Aligned_cols=531 Identities=36% Similarity=0.629 Sum_probs=503.1
Q ss_pred ccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhccC-CC-cchhHHHHHHHhCCccccHHHHHHHH
Q 044370 17 VMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATA-GP-IQLNLIDAIQRLGVGYHFERELEQAL 94 (554)
Q Consensus 17 ~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~-~~-~~l~liD~lqrLGi~~hF~~EI~~~L 94 (554)
..|++||||||+|||+||++.+.. ...+.+.+|+++||++||+||.+.. ++ ++|+|||+||||||+|||++||+++|
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 91 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDTD-ESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRAL 91 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHH
T ss_pred ccCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 369999999999999999975432 3456789999999999999997666 78 99999999999999999999999999
Q ss_pred HHHHhh-----cCCCCCCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCch
Q 044370 95 QHLYNE-----KYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGED 169 (554)
Q Consensus 95 ~~~~~~-----~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~ 169 (554)
++||+. | ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+
T Consensus 92 ~~i~~~~~~~~~-----~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~ 166 (555)
T 3n0f_A 92 DRFVSSGGFDGV-----TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGEN 166 (555)
T ss_dssp HHHHHTCHHHHH-----TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHhhcccccc-----ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcH
Confidence 999973 4 246999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhh-cCCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHH
Q 044370 170 ILDEAIAFTTTHLKSVAT-HLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKK 248 (554)
Q Consensus 170 iLdea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~ 248 (554)
|||||++||++||++.+. .++++|+++|+|||++|+|+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 167 iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~ 246 (555)
T 3n0f_A 167 ILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246 (555)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHH
Confidence 999999999999998765 5678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHh
Q 044370 249 ELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIER 328 (554)
Q Consensus 249 El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~r 328 (554)
||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|
T Consensus 247 EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~R 326 (555)
T 3n0f_A 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVER 326 (555)
T ss_dssp HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhcc
Q 044370 329 WDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTS 408 (554)
Q Consensus 329 Wd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~ 408 (554)
||++++++||+|||+||.+++++++|++.++.++++.++++|++++|+++++||++||+|+++||+||+||||+||++|+
T Consensus 327 WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 406 (555)
T 3n0f_A 327 WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSS 406 (555)
T ss_dssp TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccch
Confidence 99999999999999999999999999998887777778999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHH
Q 044370 409 GYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELY 488 (554)
Q Consensus 409 g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~ 488 (554)
|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++
T Consensus 407 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~ 486 (555)
T 3n0f_A 407 SGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVM 486 (555)
T ss_dssp SHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccC
Q 044370 489 RQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 489 ~~i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 487 ~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 487 NLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999998899999999999999999999999999999977899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.2e-160 Score=1319.68 Aligned_cols=535 Identities=34% Similarity=0.576 Sum_probs=512.9
Q ss_pred cccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhccCCC-cchhHHHHHHHhCCccccHHHHHHHHHH
Q 044370 18 MRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGP-IQLNLIDAIQRLGVGYHFERELEQALQH 96 (554)
Q Consensus 18 ~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~ 96 (554)
.||++|||||+|||+||++.+. +...+.+.+++++||++||+|+.+..|+ ++|+|||+||||||+|||++||+++|++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~ 79 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLS-DYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSS 79 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCC-SSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCc-hhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHH
Confidence 3899999999999999986432 2334578999999999999999877788 9999999999999999999999999999
Q ss_pred HHhhcCCCC---CC-CCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchHHH
Q 044370 97 LYNEKYSDD---DT-EDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILD 172 (554)
Q Consensus 97 ~~~~~~~~~---~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iLd 172 (554)
||++|.++. .. ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||++|||+|||
T Consensus 80 i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ 159 (543)
T 2ong_A 80 IYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLE 159 (543)
T ss_dssp HHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHH
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHH
Confidence 999885432 12 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhc-C-CCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHHH
Q 044370 173 EAIAFTTTHLKSVATH-L-SNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKEL 250 (554)
Q Consensus 173 ea~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 250 (554)
||++||++||++++.. + +++|+++|+|||++|+|+++||||||+||++|++++++|++||||||||||+||++||+||
T Consensus 160 eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El 239 (543)
T 2ong_A 160 SAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239 (543)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999876 5 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcC
Q 044370 251 CEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWD 330 (554)
Q Consensus 251 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd 330 (554)
++++|||+++||.+++||||+|+++||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||
T Consensus 240 ~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD 319 (543)
T 2ong_A 240 KESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWD 319 (543)
T ss_dssp HHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 99999999999987899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccch
Q 044370 331 ESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGY 410 (554)
Q Consensus 331 ~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~ 410 (554)
+++++.+|+|||+||.++++++++++.++.+.++.++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+
T Consensus 320 ~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~ 399 (543)
T 2ong_A 320 INSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISG 399 (543)
T ss_dssp SSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCH
T ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchH
Confidence 99999999999999999999999999988887777899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHH
Q 044370 411 TMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQ 490 (554)
Q Consensus 411 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~ 490 (554)
++++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus 400 ~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ 479 (543)
T 2ong_A 400 PCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWL 479 (543)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccC
Q 044370 491 VSNAWKDINEEC-LNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 491 i~~~~k~ln~e~-l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
|+++||+||+++ ++++++|++|+++++|+||+++++|+++||||.|++.+|++|++||++|||
T Consensus 480 ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 480 IAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999 988889999999999999999999999999999987899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=7.7e-161 Score=1320.63 Aligned_cols=536 Identities=35% Similarity=0.638 Sum_probs=488.7
Q ss_pred ccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhccCCC-cchhHHHHHHHhCCccccHHHHHHHHH
Q 044370 17 VMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGP-IQLNLIDAIQRLGVGYHFERELEQALQ 95 (554)
Q Consensus 17 ~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~-~~l~liD~lqrLGi~~hF~~EI~~~L~ 95 (554)
+.||++|||||+|||+||+ +++.+...+.+.+++++||++||+|+.+..|+ ++|+|||+||||||+|||++||+++|+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 4699999999999999995 44333345578999999999999999877788 999999999999999999999999999
Q ss_pred HHHhhcCCC---CCCCCchHHHHHHHHHhhhcCcccccccccceecccc-ccccccccchHHHHHHHhhhccCCCCchHH
Q 044370 96 HLYNEKYSD---DDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKG-NFKESLASDALGMLSLYEAAHLGVHGEDIL 171 (554)
Q Consensus 96 ~~~~~~~~~---~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~glL~LyeAs~l~~~gE~iL 171 (554)
+||++|... .....|||+|||+|||||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 999875321 1124699999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhc---C-CCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhH
Q 044370 172 DEAIAFTTTHLKSVATH---L-SNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHK 247 (554)
Q Consensus 172 dea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 247 (554)
|||++||++||++++.. + +++|+++|+|||++|+|+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998875 5 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHH
Q 044370 248 KELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIE 327 (554)
Q Consensus 248 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~ 327 (554)
+||++++|||+++||.+++||||||+++||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~ 322 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999987899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhc
Q 044370 328 RWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVT 407 (554)
Q Consensus 328 rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS 407 (554)
|||+++++.+|+|||+||.++++++++++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||++|.+|
T Consensus 323 rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 402 (549)
T 1n1b_A 323 RWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 402 (549)
T ss_dssp HTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccc
Confidence 99999999999999999999999999999988887777889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCCchhH-HhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHH
Q 044370 408 SGYTMLTTVSFLGMDNIVTKET-FDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEE 486 (554)
Q Consensus 408 ~g~~~~~~~~~~~~g~~l~~ev-~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~ 486 (554)
+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++
T Consensus 403 ~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~ 482 (549)
T 1n1b_A 403 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482 (549)
T ss_dssp TCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccC
Q 044370 487 LYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 487 i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
++++|+++||+||+++++++++|++|+++++|+||++++||+++||||.|++.||++|++||++|||
T Consensus 483 i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 483 VKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999998899999999999999999999999999999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=8e-160 Score=1316.28 Aligned_cols=534 Identities=34% Similarity=0.571 Sum_probs=468.6
Q ss_pred ccccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhccCCC-cchhHHHHHHHhCCccccHHHHHHH
Q 044370 15 SQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGP-IQLNLIDAIQRLGVGYHFERELEQA 93 (554)
Q Consensus 15 ~~~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~-~~l~liD~lqrLGi~~hF~~EI~~~ 93 (554)
.+..||++|||||+|||+||++.+. ....+.+.+++++||++||+||.+..|+ ++|+|||+||||||+|||++||+++
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~ 109 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSFDS-EYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEI 109 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred ccccCCCCCCCCCcCCcccccCCCc-hhhhHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 4558999999999999999986432 3334578899999999999999877788 9999999999999999999999999
Q ss_pred HHHHH-hhcCCCCCCCCchHHHHHHHHHhhhcCcccccccccceecccc-ccccccccchHHHHHHHhhhccCCCCchHH
Q 044370 94 LQHLY-NEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKG-NFKESLASDALGMLSLYEAAHLGVHGEDIL 171 (554)
Q Consensus 94 L~~~~-~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~glL~LyeAs~l~~~gE~iL 171 (554)
|++|| +++.+ ...||++|||+|||||||||+||||||++|||++| +|++++.+||+|||||||||||++|||+||
T Consensus 110 L~~i~~~~~~~---~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iL 186 (569)
T 2j5c_A 110 LNSKYYTNNEI---DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETL 186 (569)
T ss_dssp HHHHTTSSCCS---CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhccCc---ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHH
Confidence 99999 76521 34699999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhcC-CCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHHH
Q 044370 172 DEAIAFTTTHLKSVATHL-SNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKEL 250 (554)
Q Consensus 172 dea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 250 (554)
|||++||++||+++++++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||
T Consensus 187 deA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL 266 (569)
T 2j5c_A 187 RLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQEL 266 (569)
T ss_dssp HHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999987766 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcC
Q 044370 251 CEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWD 330 (554)
Q Consensus 251 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd 330 (554)
++++|||+++||.+++||||+|+++||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||
T Consensus 267 ~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD 346 (569)
T 2j5c_A 267 KEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWD 346 (569)
T ss_dssp HHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcC
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccch
Q 044370 331 ESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGY 410 (554)
Q Consensus 331 ~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~ 410 (554)
+++++.+|+|||+||.++++++++++.++.+.++.++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+
T Consensus 347 ~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~ 426 (569)
T 2j5c_A 347 IESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGG 426 (569)
T ss_dssp SGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSC
T ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchH
Confidence 99999999999999999999999999988887777889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHH
Q 044370 411 TMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQ 490 (554)
Q Consensus 411 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~ 490 (554)
++++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus 427 ~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ 506 (569)
T 2j5c_A 427 IPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSL 506 (569)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCCCchHHHHHHhhcccccC
Q 044370 491 VSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 491 i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|++.||++|++||++|||
T Consensus 507 ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 507 IDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999 8899999999999999999999999 99999987899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=7.2e-143 Score=1217.49 Aligned_cols=487 Identities=34% Similarity=0.627 Sum_probs=455.9
Q ss_pred CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCC---CC---CCCchHHHHHHHHHhhhcCcccccccccceecc
Q 044370 67 GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSD---DD---TEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDD 139 (554)
Q Consensus 67 ~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~---~~---~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 139 (554)
|+ ++|++||+||||||+|||++||+++|+++|++|.++ +. ...||++|||+|||||||||+||||||++|+|+
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 56 999999999999999999999999999999988652 11 136999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhhc--------CCCcHHHHHHHHccCccccC
Q 044370 140 KGNFKESL---ASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH--------LSNPLKAQVRHALRQPLHRG 208 (554)
Q Consensus 140 ~g~F~~~~---~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 208 (554)
+|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.. ++++|+++|+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 99999865 69999999999999999999999999999999999997652 24779999999999999999
Q ss_pred cchhhHhhhHHhhcCCcc------------ccHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhh
Q 044370 209 LPRLEHRRYISIYQDDAS------------HYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVEC 276 (554)
Q Consensus 209 ~~rle~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~ 276 (554)
+||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||++||
T Consensus 457 l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 535 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEF 535 (817)
T ss_dssp CHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHH
T ss_pred ChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHH
Confidence 999999999999998875 499999999999999999999999999999999999 6999999999999
Q ss_pred hhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHH
Q 044370 277 YFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIE 356 (554)
Q Consensus 277 yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~ 356 (554)
|||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++
T Consensus 536 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~ 615 (817)
T 3sdr_A 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615 (817)
T ss_dssp HHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhH-HHHHHHHhcCCCCchhHHhhcc-
Q 044370 357 KEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTM-LTTVSFLGMDNIVTKETFDWVF- 434 (554)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~-~~~~~~~~~g~~l~~ev~e~~~- 434 (554)
.++.++++.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+.+|+|+++|+.
T Consensus 616 ~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~ 695 (817)
T 3sdr_A 616 WEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDY 695 (817)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCC
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccc
Confidence 88877656688999999999999999999999999999999999999999999999 8888889999999999999965
Q ss_pred -cchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH
Q 044370 435 -SRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQH-GLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPL 512 (554)
Q Consensus 435 -~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~-g~S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~ 512 (554)
+.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++++|++|
T Consensus 696 ~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~ 775 (817)
T 3sdr_A 696 PGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFAC 775 (817)
T ss_dssp TTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHH
T ss_pred cchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 455999999999999999999999999999999999999999 799999999999999999999999999988999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccCC
Q 044370 513 LMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554 (554)
Q Consensus 513 ~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 554 (554)
+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 776 ~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 776 KKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.5e-142 Score=1205.82 Aligned_cols=484 Identities=32% Similarity=0.568 Sum_probs=455.3
Q ss_pred CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCC---CC-C--CCchHHHHHHHHHhhhcCcccccccccceecc
Q 044370 67 GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSD---DD-T--EDDLYRISLRFRLLRQHGYNVSCDKFNMFKDD 139 (554)
Q Consensus 67 ~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~---~~-~--~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 139 (554)
|+ ++|++||+||||||+|||++||+++|+++|++|.++ +. . ..||++|||+|||||||||+||||||++|+|+
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 56 999999999999999999999999999999988652 11 1 36999999999999999999999999999999
Q ss_pred ccccccc---cccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhh---cCCCcHHHHHHHHccCccccCcchhh
Q 044370 140 KGNFKES---LASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVAT---HLSNPLKAQVRHALRQPLHRGLPRLE 213 (554)
Q Consensus 140 ~g~F~~~---~~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rle 213 (554)
+|+|+++ +.+|++||||||||||+++|||+|||||++||++||++.++ .++++|+++|+|||++|||+++||||
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 9999975 58999999999999999999999999999999999999875 25788999999999999999999999
Q ss_pred HhhhHHhhcCCcc------------ccHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhh
Q 044370 214 HRRYISIYQDDAS------------HYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWIL 281 (554)
Q Consensus 214 ~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~ 281 (554)
||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||++|||||++
T Consensus 405 ar~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~ 483 (764)
T 3p5p_A 405 ARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSA 483 (764)
T ss_dssp HHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHH
Confidence 9999999998876 499999999999999999999999999999999999 599999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHh
Q 044370 282 GVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIAN 361 (554)
Q Consensus 282 ~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~ 361 (554)
| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+
T Consensus 484 ~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~ 561 (764)
T 3p5p_A 484 T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVK 561 (764)
T ss_dssp C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred -cCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHH
Q 044370 362 -EGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKII 440 (554)
Q Consensus 362 -~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~ 440 (554)
+|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.+++++|+.+|+++++|+..+|+|+
T Consensus 562 ~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~ 640 (764)
T 3p5p_A 562 VQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMF 640 (764)
T ss_dssp HHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHH
T ss_pred hcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHH
Confidence 555 789999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred HHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHH
Q 044370 441 RASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQH-GLSEQEVCEELYRQVSNAWKDINEECLN-PTAVPMPLLMRALN 518 (554)
Q Consensus 441 ~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~-g~S~EeA~~~i~~~i~~~~k~ln~e~l~-~~~~p~~~~~~~ln 518 (554)
++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||+++++ ++++|++|+++++|
T Consensus 641 ~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n 720 (764)
T 3p5p_A 641 ELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFN 720 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999999997 77899999999999
Q ss_pred HHhhhhhhcccCCCCCCCCchHHHHHHhhcccccCC
Q 044370 519 LARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI 554 (554)
Q Consensus 519 ~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 554 (554)
+||++++||+++||||.|+..||++|++||++||++
T Consensus 721 ~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 721 LRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp THHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999777999999999999974
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=2.1e-142 Score=1209.33 Aligned_cols=484 Identities=34% Similarity=0.606 Sum_probs=458.6
Q ss_pred CC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCC------CCCCchHHHHHHHHHhhhcCcccccccccceecc
Q 044370 67 GP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDD------DTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDD 139 (554)
Q Consensus 67 ~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~ 139 (554)
|+ ++|++||+||||||+|||++||+++|+++|++|.++. ....||++|||+|||||||||+||||||++|+|+
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 56 9999999999999999999999999999999886521 1136999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhhc--------CCCcHHHHHHHHccCccccC
Q 044370 140 KGNFKESL---ASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH--------LSNPLKAQVRHALRQPLHRG 208 (554)
Q Consensus 140 ~g~F~~~~---~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 208 (554)
+|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.. ++++|+++|+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 99999866 69999999999999999999999999999999999998642 46789999999999999999
Q ss_pred cchhhHhhhHHhhcCCccc------------cHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhh
Q 044370 209 LPRLEHRRYISIYQDDASH------------YKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVEC 276 (554)
Q Consensus 209 ~~rle~r~yI~~y~~~~~~------------n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~ 276 (554)
+||||||+||++|++++.+ |++||||||||||+||++||+||++++|||+++|+ .++||||||++||
T Consensus 429 l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 507 (785)
T 3s9v_A 429 MPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507 (785)
T ss_dssp CHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHH
T ss_pred chHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHH
Confidence 9999999999999988753 99999999999999999999999999999999999 6999999999999
Q ss_pred hhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHH
Q 044370 277 YFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIE 356 (554)
Q Consensus 277 yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~ 356 (554)
|||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++
T Consensus 508 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~ 587 (785)
T 3s9v_A 508 YFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIA 587 (785)
T ss_dssp HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhccc
Q 044370 357 KEIAN-EGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFS 435 (554)
Q Consensus 357 ~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~ 435 (554)
.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+|+++|+..
T Consensus 588 ~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~ 666 (785)
T 3s9v_A 588 KEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDR 666 (785)
T ss_dssp HHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTST
T ss_pred HHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccc
Confidence 88877 555 7899999999999999999999999999999999999999999999999999999999999999999656
Q ss_pred chHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHH
Q 044370 436 RPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQH-GLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLM 514 (554)
Q Consensus 436 ~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~-g~S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~ 514 (554)
+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||+++++++ +|++|++
T Consensus 667 ~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~ 745 (785)
T 3s9v_A 667 ESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKR 745 (785)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHH
T ss_pred cHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 69999999999999999999999999999999999999999 999999999999999999999999999877 9999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCc-hHHHHHHhhcccccC
Q 044370 515 RALNLARVIDVVYKEGDGYTHVGN-EMKQNVAALLIDQVP 553 (554)
Q Consensus 515 ~~ln~aR~~~~~Y~~~Dg~t~~~~-~~k~~i~~ll~~pi~ 553 (554)
+++|+||++++||+++||||.|+. .||++|++||++||.
T Consensus 746 ~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 746 LVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999999999999975 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.3e-107 Score=913.84 Aligned_cols=449 Identities=21% Similarity=0.300 Sum_probs=390.1
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCC-cchhHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCC---C---CCCchHHHH
Q 044370 48 LKELKALKEEVGRKLLAT-----AGP-IQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDD---D---TEDDLYRIS 115 (554)
Q Consensus 48 ~~~~~~lk~~v~~~l~~~-----~~~-~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~---~---~~~dl~~~a 115 (554)
.+..+-|+..|+++.... .|+ ++|++||+||||||+|||++||+++|+++|++|.++. . ...||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 456677889998876543 266 9999999999999999999999999999999886421 1 235999999
Q ss_pred HHHHHhhhcCcccccccccceeccccccccc---cccchHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHhHhhc----
Q 044370 116 LRFRLLRQHGYNVSCDKFNMFKDDKGNFKES---LASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATH---- 188 (554)
Q Consensus 116 l~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~---~~~d~~glL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---- 188 (554)
|+|||||||||+||||||++|+ ++|+|++. +.+|++|||+||||||+++|||+|||||+.||++||++.+..
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999954 368999999999999999999999999999999999997642
Q ss_pred ----CCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCcc-------------ccHHHHHHHhhhhhHHhhhhHHHHH
Q 044370 189 ----LSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDAS-------------HYKALLTLAKLDFNLVQSLHKKELC 251 (554)
Q Consensus 189 ----~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~ 251 (554)
++++|+++|+|||++|+|+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 25789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred HHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcCC
Q 044370 252 EISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDE 331 (554)
Q Consensus 252 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd~ 331 (554)
+++||||++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| ||++.||+||+|||.
T Consensus 459 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~ 535 (727)
T 3pya_A 459 IFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIA 535 (727)
T ss_dssp HHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-
T ss_pred hhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccc
Confidence 99999999999 579999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred c---------cccc---Cchh--HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCh
Q 044370 332 S---------SMDQ---LPEY--MQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKM 397 (554)
Q Consensus 332 ~---------~~~~---lpe~--mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtl 397 (554)
+ +.+. +|+| ||+||.+|++++||++.++.+++|.++.+|++++|.++++++++||+ +
T Consensus 536 ~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~-------- 606 (727)
T 3pya_A 536 NARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E-------- 606 (727)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------
T ss_pred ccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------
Confidence 4 3333 2777 99999999999999998777765667899999999999999999998 2
Q ss_pred HHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCC
Q 044370 398 EEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHG 477 (554)
Q Consensus 398 eEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g 477 (554)
+| +. .++.++ .+..|..+++ ++.+ +.|..|.++++.|+||+||+.+|++|+
T Consensus 607 ~E----Ae--llv~~I----~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~----------------- 657 (727)
T 3pya_A 607 GE----GE--LMVKMI----ILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE----------------- 657 (727)
T ss_dssp CH----HH--HHHHHH----HHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------
T ss_pred cc----ee--eeeeee----ecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------
Confidence 33 11 333333 3333888998 8887 888999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccC
Q 044370 478 LSEQEVCEELYRQVSNAWKDINEECLNPT--AVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVP 553 (554)
Q Consensus 478 ~S~EeA~~~i~~~i~~~~k~ln~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 553 (554)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|. |..+|.+||++|+-
T Consensus 658 ------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 ------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLFQKVG 720 (727)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHHSCCC
T ss_pred ------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHcCccc
Confidence 55788999999999999999854 699999 899999999986 999985 99999999999974
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.5e-51 Score=428.60 Aligned_cols=255 Identities=17% Similarity=0.173 Sum_probs=231.7
Q ss_pred hhHHhhhhHHHHHHHH-HHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccC--C
Q 044370 239 FNLVQSLHKKELCEIS-RWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDVY--G 314 (554)
Q Consensus 239 Fn~~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~~--g 314 (554)
|..-+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ |
T Consensus 11 ~p~~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~ 89 (337)
T 1ps1_A 11 LPGRQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGE 89 (337)
T ss_dssp SCCCCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCC
Confidence 3444677888998777 6999999964 59999999999999999999999999999 9999999999999999998 6
Q ss_pred CHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCC
Q 044370 315 TPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYI 394 (554)
Q Consensus 315 t~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~i 394 (554)
|++|++.|++++.+|+.+ .+|+++++++.++.+++++++..+ +.....++++.|++|++++++||+|+.+|++
T Consensus 90 ~~ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~ 162 (337)
T 1ps1_A 90 NPEDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAP 162 (337)
T ss_dssp CHHHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred CHHHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999764 478999999999999999997543 2345789999999999999999999999999
Q ss_pred C-ChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHH
Q 044370 395 P-KMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYM 473 (554)
Q Consensus 395 P-tleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyM 473 (554)
| |++||+++|++|+|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||
T Consensus 163 P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m 241 (337)
T 1ps1_A 163 CDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILR 241 (337)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHH
T ss_pred CCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHH
Confidence 9 9999999999999999999999999999999999998 6778999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044370 474 KQHGLSEQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 474 ke~g~S~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
+++|+|+|+|++++.++|+++||++|++.
T Consensus 242 ~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 242 REHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.3e-49 Score=405.36 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=224.2
Q ss_pred hhhHHHHHHHH-HHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccCCCHHHHHH
Q 044370 244 SLHKKELCEIS-RWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDVYGTPEELKL 321 (554)
Q Consensus 244 ~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~~gt~eEl~~ 321 (554)
..|.+|++..+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 57889999887 477999996 579999999999999999999999999999 999999999999999999 78999999
Q ss_pred HHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHH
Q 044370 322 FTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYM 401 (554)
Q Consensus 322 ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl 401 (554)
|++++.+|+.+ +.+|+++++++.++++++++++..+. .+.++.|+.++++++ ||+|+..|++||++|||
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999764 46899999999999999999987652 245677999999997 89999999999999999
Q ss_pred hhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCC--------CchhHHHHH
Q 044370 402 RVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGH--------AASAVECYM 473 (554)
Q Consensus 402 ~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~--------v~n~V~cyM 473 (554)
++|++|+|++++++++++++|..+|+++++. .++|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999999999983 69999999999999999999999999999 789999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044370 474 KQHGLSEQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 474 ke~g~S~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
+++|+|+|+|++++.++|+++|+++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=4.1e-48 Score=400.03 Aligned_cols=249 Identities=13% Similarity=0.092 Sum_probs=224.1
Q ss_pred hhhHHhhhhHHHHHHHHH-HHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccCCC
Q 044370 238 DFNLVQSLHKKELCEISR-WWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDVYGT 315 (554)
Q Consensus 238 dFn~~Q~~hq~El~~lsr-Wwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~~gt 315 (554)
.|..-...|.+|++..+. ||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+
T Consensus 20 p~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~ 97 (320)
T 3bny_A 20 TFQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MS 97 (320)
T ss_dssp SCCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CC
Confidence 345556788899998885 7799999755 9999999999999999999999999999 999999999999999999 88
Q ss_pred HHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCC
Q 044370 316 PEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIP 395 (554)
Q Consensus 316 ~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iP 395 (554)
++|++.|++++.+|+.+ +.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++|
T Consensus 98 ~~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~P 166 (320)
T 3bny_A 98 FEEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPM 166 (320)
T ss_dssp HHHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCC
T ss_pred hhhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCC
Confidence 99999999999999764 4679999999999999999998654 2 23455566777 599999999999999
Q ss_pred ChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCC--------Cch
Q 044370 396 KMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGH--------AAS 467 (554)
Q Consensus 396 tleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~--------v~n 467 (554)
|++||+++|++|+|++++++++++++|..+|+++++. +++|+++++.++||+|||+||+||+++|+ ++|
T Consensus 167 s~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N 243 (320)
T 3bny_A 167 GLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCT 243 (320)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCS
T ss_pred CHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999984 69999999999999999999999999998 789
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044370 468 AVECYMKQHGLSEQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 468 ~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
+|.|||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 244 ~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 244 SVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=6e-46 Score=393.78 Aligned_cols=249 Identities=12% Similarity=0.042 Sum_probs=226.4
Q ss_pred hHHHHHH-HHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhcc--CC-CHHHHH
Q 044370 246 HKKELCE-ISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDV--YG-TPEELK 320 (554)
Q Consensus 246 hq~El~~-lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~--~g-t~eEl~ 320 (554)
|-++++. +.+||+++|+. .-+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++
T Consensus 58 ~~~~v~~~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~ 136 (382)
T 3kb9_A 58 YWPKLQETTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWR 136 (382)
T ss_dssp THHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHH
Confidence 3345443 44799999996 347899999999999999999999999999 999999999999999996 56 999999
Q ss_pred HHHHHHHhc-CCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHH
Q 044370 321 LFTEVIERW-DESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEE 399 (554)
Q Consensus 321 ~ft~av~rW-d~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleE 399 (554)
.|++++.++ +. ...+|+++++++.++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|
T Consensus 137 ~~~~~l~~~l~~--~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eE 210 (382)
T 3kb9_A 137 RLRGLLHTALDS--PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEE 210 (382)
T ss_dssp HHHHHHHHHHHS--CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhcC--CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 999999987 32 2235888999999999999999754333 3488999999999999999999999999999999
Q ss_pred HHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCC
Q 044370 400 YMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLS 479 (554)
Q Consensus 400 Yl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S 479 (554)
||++|++|+|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|
T Consensus 211 Yl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s 289 (382)
T 3kb9_A 211 YLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLT 289 (382)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCC
T ss_pred HHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCC
Confidence 999999999999999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044370 480 EQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 480 ~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
+|+|++++.++|+++||++|+..
T Consensus 290 ~eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 290 LEEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=2.8e-33 Score=299.88 Aligned_cols=249 Identities=13% Similarity=0.120 Sum_probs=191.0
Q ss_pred hHHHHHHHH-HHHHHhCCCccchhhhhhhhhhhhhhhccccCCCc-hhHHH-HHHHHHHHHHhhhhh-hccCC-CHHHH-
Q 044370 246 HKKELCEIS-RWWKDLDFARKLPFARDRMVECYFWILGVYFEPNY-SLARR-ILTKVIAMTSIIDDI-YDVYG-TPEEL- 319 (554)
Q Consensus 246 hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~-s~~Rl-~~aK~~~l~~iiDD~-~D~~g-t~eEl- 319 (554)
|-+|++.-. .|..++++... +-.|+++..+-|..++.+..|.. +..|+ +.+|+++|+|++||. +|..| +.+.+
T Consensus 127 ~~~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~ 205 (433)
T 3v1v_A 127 RVEEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLG 205 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhH
Confidence 344666444 69999876433 33578888885555444445999 79998 999999999999999 59755 33221
Q ss_pred HHHHH---HHHhcCCcccccCch-----hHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhc
Q 044370 320 KLFTE---VIERWDESSMDQLPE-----YMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHE 391 (554)
Q Consensus 320 ~~ft~---av~rWd~~~~~~lpe-----~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~ 391 (554)
..+.. ++.... ...+.-|. .-.++..+++++++++...+.+ ....+++++|++|+++|++||+|+..
T Consensus 206 ~~l~~a~~~~d~l~-~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~ 280 (433)
T 3v1v_A 206 GRLLLAHTAIDHFH-STAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQT 280 (433)
T ss_dssp HHHHHHHTTTSCCC-CCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-cccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12222 111110 00110010 0124578999999999765433 35889999999999999999999999
Q ss_pred CCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhC-CCchhHH
Q 044370 392 NYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERG-HAASAVE 470 (554)
Q Consensus 392 g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG-~v~n~V~ 470 (554)
|++||++|||++|++| |+.++++++.+++|..+|++++++ +.+++|+++++.++||+|||+||+||+++| +++|+|.
T Consensus 281 g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~ 358 (433)
T 3v1v_A 281 GHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPV 358 (433)
T ss_dssp TCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHH
T ss_pred CCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHH
Confidence 9999999999999999 777777778888999999999998 778889999999999999999999999995 7889999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 044370 471 CYMKQHGLSEQEVCEELYRQVSNAWKDINEEC 502 (554)
Q Consensus 471 cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e~ 502 (554)
|||+++|+|+|+|++++.++|+++++++.+..
T Consensus 359 ~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 359 VIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.78 E-value=2.3e-18 Score=180.90 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=177.8
Q ss_pred HHHHHHHHhC------------CCccchhhhhhhhhhhhhhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccCCCHHH
Q 044370 252 EISRWWKDLD------------FARKLPFARDRMVECYFWILGVYFEPNYSLARR-ILTKVIAMTSIIDDIYDVYGTPEE 318 (554)
Q Consensus 252 ~lsrWwk~~~------------l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~~D~~gt~eE 318 (554)
+..+|..+.| +. .-+-..++++.+=.|.++..| |..+...+ .++++.+|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4448998888 52 223355666777667666665 99999888 99999999999999999654 66
Q ss_pred HHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChH
Q 044370 319 LKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKME 398 (554)
Q Consensus 319 l~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtle 398 (554)
+..|.+.+-+ +.. |+ .++..++.+.+.++... .+..+..++.++|.+|+.+++.|+.. .+..|+.+
T Consensus 110 l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~ 175 (374)
T 1yyq_A 110 MVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSH 175 (374)
T ss_dssp HTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCT
T ss_pred HHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHH
Confidence 7777776654 221 11 15667777777777433 34456889999999999999999874 67789999
Q ss_pred HHHhhhhhccchhHHHHHHHHhcCCCCchhHH-hh--cccchHHHHHHHHHhHHccCccchhhHhh-hCCCchhHHHHHH
Q 044370 399 EYMRVALVTSGYTMLTTVSFLGMDNIVTKETF-DW--VFSRPKIIRASEIIGRFMDDIKSHKFEQE-RGHAASAVECYMK 474 (554)
Q Consensus 399 EYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~-e~--~~~~~~l~~~~~~i~RL~NDI~S~~kE~~-rG~v~n~V~cyMk 474 (554)
+|...++.++|+.-.... -.+|..++ +. ++.+...+.....++.|+|||.||.||.. .|+.+|+|.+++.
T Consensus 176 ~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~ 249 (374)
T 1yyq_A 176 DYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVV 249 (374)
T ss_dssp THHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehh
Confidence 999998888887543322 22444433 11 13345667777779999999999999998 4999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHh
Q 044370 475 QHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLAR 521 (554)
Q Consensus 475 e~g~S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR 521 (554)
++|+|.++|++++..++..+..++... +. ...|. +++.+-+..|
T Consensus 250 ~~g~S~~eAl~~v~~~~~~~~~r~~~~-L~-~~~~~-~l~al~~~ir 293 (374)
T 1yyq_A 250 SDEISLHEALEKLTQDTLHSSKQMVAV-FS-DKDPQ-VMDTIECFMH 293 (374)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHH-HS-SSCHH-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH-hc-cCCHH-HHHHHHHHHh
Confidence 999999999999999999998888553 32 22332 4444444444
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.10 E-value=0.00014 Score=83.14 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=27.7
Q ss_pred cccccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhh
Q 044370 14 KSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLL 63 (554)
Q Consensus 14 ~~~~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 63 (554)
...+.||+|||+||+|+++|+++.... ..++.+.+++++|+++||+||.
T Consensus 20 ~~~~~Rrsany~Ps~W~~~~i~sl~~~-~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 20 TSGLIRRTANPHPNVWGYDLVHSLKSP-YIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ---------------CHHHHHHTCCCG-GGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCCCCCCCCCCeeeccCCc-ccchhHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999863322 3457889999999999999997
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=85.84 E-value=7.2 Score=40.17 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRAS 443 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 443 (554)
..+..+.+++...+.+-..+..|.... ||.++|++.-..-+|..+..++.. ...| .+++..+.+ ..+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 356778888999999999999997655 999999998665555554333211 1122 455555443 5667788
Q ss_pred HHHhHHccCccchhhH-----------hhhCCCchhHHHHHHhC
Q 044370 444 EIIGRFMDDIKSHKFE-----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 444 ~~i~RL~NDI~S~~kE-----------~~rG~v~n~V~cyMke~ 476 (554)
+...-+.||+..+.-. ...|.. +...+|.-++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888889999877532 233444 6666665544
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=85.31 E-value=4.8 Score=40.32 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
.+..+.++....+.+-..+..|... .||.++|+..-..-+|..+..++ ..| ++ ..+++..+.+ ..+-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~la-g~~~~~~~~l---~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTG-GAEEELAERF---SHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 4556677777888888888888643 48999999886655555433222 222 11 2455555443 66777888
Q ss_pred HHhHHccCccchhhHh-----hhCCCchhHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCH-HHHHHH
Q 044370 445 IIGRFMDDIKSHKFEQ-----ERGHAASAVECYMKQHGL--SEQEVCEELYRQVSNAWKDINEECLNPTAVPM-PLLMRA 516 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE~-----~rG~v~n~V~cyMke~g~--S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~-~~~~~~ 516 (554)
...-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHH
Confidence 8889999998875433 23333 666677655421 145555555555555555443 2553 455555
Q ss_pred HHHHhh
Q 044370 517 LNLARV 522 (554)
Q Consensus 517 ln~aR~ 522 (554)
.++++.
T Consensus 273 ~~l~~~ 278 (295)
T 3ipi_A 273 FQITDY 278 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566543
No 20
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=82.52 E-value=40 Score=33.24 Aligned_cols=191 Identities=17% Similarity=0.111 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhc-CCccc--ccCchhHHHHHHHHHHHHHHHHHHHHhcCCccH
Q 044370 291 LARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERW-DESSM--DQLPEYMQTFFGALLDLYNEIEKEIANEGWSYR 367 (554)
Q Consensus 291 ~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rW-d~~~~--~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 367 (554)
..|-.+.-+-.|.-.+||+-|....+.+|+.+-+.+++- +.... ...|+ .++..++..++.+. +.
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l-- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NI-- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CC--
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CC--
Confidence 456666677788888999999766544466665555542 11110 00022 35667777665443 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHh
Q 044370 368 VQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIG 447 (554)
Q Consensus 368 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~ 447 (554)
-++.+.+++.++-.. ......+|++|+..+...+.|.--.+++-.++... .++..+. ....+...
T Consensus 106 ---~~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~-------A~~lG~Al 170 (293)
T 3acx_A 106 ---AFQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDV-------ARRLGESL 170 (293)
T ss_dssp ---CHHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHH-------HHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHH-------HHHHHHHH
Confidence 134456677777433 33456789999988888777765555544444321 1222222 22223323
Q ss_pred HHccCccchhhHhhhCCC--chhHHHHHHhCCCCHHH---------HHHHHHHHHHHHHHHHHhhhcCCCCCCHH
Q 044370 448 RFMDDIKSHKFEQERGHA--ASAVECYMKQHGLSEQE---------VCEELYRQVSNAWKDINEECLNPTAVPMP 511 (554)
Q Consensus 448 RL~NDI~S~~kE~~rG~v--~n~V~cyMke~g~S~Ee---------A~~~i~~~i~~~~k~ln~e~l~~~~~p~~ 511 (554)
-|.|=+........+|.+ +. =-|.++|+|.++ ..+-+..++..+..-+.+..--...+|..
T Consensus 171 QltNilRDv~eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~ 242 (293)
T 3acx_A 171 QLINILRDVGEDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp HHHHHHHCHHHHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred HHHHHHHHHHHHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHH
Confidence 333322233344456654 43 246778999876 22345556666665554432212346643
No 21
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=82.16 E-value=41 Score=33.21 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhhhhhccCC-C-HHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHH
Q 044370 293 RRILTKVIAMTSIIDDIYDVYG-T-PEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQY 370 (554)
Q Consensus 293 Rl~~aK~~~l~~iiDD~~D~~g-t-~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~ 370 (554)
|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+.+-- ..-|. .+++.++..++.+.. ..
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~----~g~~~--~pv~~al~~~~~~~~--------l~---- 102 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF----AGEAT--TPAFRALQFTIATCN--------LP---- 102 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH----HTCCC--SHHHHHHHHHHHHHT--------CC----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh----cCCCC--CHHHHHHHHHHHHcC--------CC----
Confidence 4444456667778999999644 2 334444444444320 11122 256777776666541 10
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHc
Q 044370 371 AKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFM 450 (554)
Q Consensus 371 ~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ 450 (554)
++.+.+++.++..... ....+|++|+..+...+.|.--.+++-.+ |.. +++.... -...+.-.-|.
T Consensus 103 -~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~-------A~~lG~AlQlt 168 (294)
T 4hd1_A 103 -MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERARL-------SDATCTALQVA 168 (294)
T ss_dssp -SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHH-------HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHHH-------HHHHHHHHHHH
Confidence 2345566777754433 34568998888887777765544444444 322 2233322 12222323333
Q ss_pred cCccchhhHhhhCCC--chhHHHHHHhCCCCHHH
Q 044370 451 DDIKSHKFEQERGHA--ASAVECYMKQHGLSEQE 482 (554)
Q Consensus 451 NDI~S~~kE~~rG~v--~n~V~cyMke~g~S~Ee 482 (554)
|=+.......++|.+ +. -.|.++|+|.++
T Consensus 169 NilRDv~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 169 NHMQDIDRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred HHHHhchhhhccCceeCCH---HHHHHcCCCHHH
Confidence 333333344556654 43 357788998875
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=80.00 E-value=28 Score=35.33 Aligned_cols=86 Identities=16% Similarity=0.043 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRAS 443 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 443 (554)
.....+.+.....+.|-..+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+. ...+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4567788888999999998888864 345899999998776666554333221 1122 35555544 36677788
Q ss_pred HHHhHHccCccchh
Q 044370 444 EIIGRFMDDIKSHK 457 (554)
Q Consensus 444 ~~i~RL~NDI~S~~ 457 (554)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 88888999998875
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=77.64 E-value=43 Score=34.08 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhc-CCCCchhHHhhcccchHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM-DNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
..+..+.++....+.+-+.+..|.. +..||.++|+..-..-+|..+..++ ..|+ --..+++..+.+ ..+-+..+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAGVDVAKSEAL---RDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHH
Confidence 4566778888889999988888853 3458999999986665555543332 2221 012455555443 66778888
Q ss_pred HHhHHccCccchhh
Q 044370 445 IIGRFMDDIKSHKF 458 (554)
Q Consensus 445 ~i~RL~NDI~S~~k 458 (554)
...-+.||+..+.-
T Consensus 226 ~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 226 LAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhccC
Confidence 88889999988754
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=76.60 E-value=63 Score=32.75 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.++....+.+-+.+..|.. +..||.++|+..-..-+|..+..++..-++--..+++..+. ...+-+..+.
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 214 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQA---LFDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4566777888889999988888864 44689999998866555554433221111101245555544 3567778888
Q ss_pred HhHHccCccchhhH-----------hhhCCCchhHHHHHHhC
Q 044370 446 IGRFMDDIKSHKFE-----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 446 i~RL~NDI~S~~kE-----------~~rG~v~n~V~cyMke~ 476 (554)
..-+.||+..+.-+ ...|.. +...+|.-+.
T Consensus 215 aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 215 AFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 88889998877432 234444 5655665443
No 25
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=73.10 E-value=18 Score=36.21 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999998666555544332211 1123 456655543 66778888899999999
Q ss_pred cchhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-.. ..|.. +.+.+|- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22332 5555543 578888888888888877654
No 26
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=71.71 E-value=38 Score=34.32 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
.+..+.++....+.+-..+..|.... ..|.++|++.-..-+|.....++.. ...| .+++..+.+ .++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45667777888899999999997543 4599999998666555554332221 1123 455555543 66778888
Q ss_pred HHhHHccCccchhhH-----------hhhCCCchhHHHHHHhC
Q 044370 445 IIGRFMDDIKSHKFE-----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE-----------~~rG~v~n~V~cyMke~ 476 (554)
...-+.||+..+.-+ ...|.. +...+|.-++
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 889999999887532 223443 5666665543
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=70.64 E-value=39 Score=34.17 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.|-..+..|.. ..||.++|+..-..-+|.....++ ..| ++...+++..+.+ .++-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRASV-RLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777754 378999999985444444333222 222 2221455555443 56677788888899999
Q ss_pred cchhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 044370 454 KSHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDIN 499 (554)
Q Consensus 454 ~S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln 499 (554)
..+.-+ ...|.. +.+.+| ..|.|.+...+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877432 223333 566554 368888888888888876554
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=68.22 E-value=26 Score=35.04 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|. +..||.++|+..-..-+|..+..++ ..| ++...+++..+. ..++-+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777777876 4578999999985444443333222 222 111123333333 356677788888899999
Q ss_pred cchhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-+ ...|.. +.+.+|- .+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~~------l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALLG------LEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 877532 222332 5555552 688888888988888877654
No 29
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=68.14 E-value=54 Score=32.38 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHHhhcccchHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
.+..+.++....+.+-..+..|......||.++|+..-..-+|..+..++. -...| .+++ . ..++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHHH
Confidence 466677777888999988889876544789999999866555544332221 11123 2333 1 256677888
Q ss_pred HHhHHccCccchhhHh-hhCC-----C--chhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 445 IIGRFMDDIKSHKFEQ-ERGH-----A--ASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE~-~rG~-----v--~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
...-+.||+..+.-.. .-|+ . .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999886543 2232 1 2444343 2678899999999999888765
No 30
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=67.24 E-value=69 Score=32.31 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhc-CCCCchhHHhhcccchHHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM-DNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
....+.+.....+.+-+.+..|.. +..||.++|++.-..-+|..+..++ ..|+ --..+++..+.+ ..+-+..+.
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSC-YQGAQLAGAPQSVIDRT---RDIGIAIGC 218 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 456677778888888887777753 3568999999875554454433222 2221 012355555443 556677777
Q ss_pred HhHHccCccchhh-----------HhhhCCCchhHHHHHHh
Q 044370 446 IGRFMDDIKSHKF-----------EQERGHAASAVECYMKQ 475 (554)
Q Consensus 446 i~RL~NDI~S~~k-----------E~~rG~v~n~V~cyMke 475 (554)
..-+.||+..+.- ....|.. +...+|.-+
T Consensus 219 aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 219 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 8888888876642 3445554 566566554
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=66.26 E-value=45 Score=33.27 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=67.4
Q ss_pred HHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCccc
Q 044370 378 LVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKS 455 (554)
Q Consensus 378 ~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 455 (554)
.+.+-..+..|... .||.++|+..-..-+|..+..++ ..| ++...+++..+.+ .++-...+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~-~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASV-ILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 56677777777543 48999999985443343333222 122 1221155555443 6677788888899999988
Q ss_pred hhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 456 HKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 456 ~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
+.-+. ..|.. +.+.+| ..+.|.+...+.++++.+.++.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 276 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALRP 276 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 75432 22222 555554 4688899999988888876543
No 32
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=65.86 E-value=38 Score=33.83 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhHhhcCCCCChHHHHhhh-hhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 377 ILVEGYYDESKWFHENYIPKMEEYMRVA-LVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 377 ~~~~a~l~EAkW~~~g~iPtleEYl~~r-~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
..+.+-..+..|.. ..||.++|...- ..|++. +..++ ..| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L-~~~~~-~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGAL-IEFAL-IAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHH-HHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHH-HHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45666666667643 468999999974 445443 32222 121 11 2355555443 66777788888899999
Q ss_pred cchhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.+..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877432 223333 455444 4688999999999999887765
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=65.57 E-value=26 Score=34.95 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHH--HHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTV--SFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|...+..||.++|+..-..-+|..+..++ .-...| .+++ . ..++-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG---P---LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH---H---HHHHHHHHHHHHHHHHHH
Confidence 45677777788887556789999999975544444332221 111123 2333 1 255677788888899999
Q ss_pred cchhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-+. ..|.. +.+.++ | .+.|.+...+.++++.+.+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~----~--l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL----G--LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------C-CHHHHH----C--SSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH----H--HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22322 555444 2 477888888988888877654
No 34
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=63.38 E-value=46 Score=33.75 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777654 6899999998766555543322211 1123 455555543 66777888888999999
Q ss_pred cchhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-.. ..|.. +.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875321 22332 555444 2688899999999988877654
No 35
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=61.60 E-value=50 Score=33.72 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh----------cCC-CCChHHHHhhhhhccchhHHHHHHHHhc-CCCCchhHHhhcc
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFH----------ENY-IPKMEEYMRVALVTSGYTMLTTVSFLGM-DNIVTKETFDWVF 434 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~----------~g~-iPtleEYl~~r~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~ 434 (554)
....+.++....+.|-..+..|.. .+. .||.++|+..-..-+|..+..++ ..|. --..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH-
Confidence 466778888899999998989862 233 67999999986655555543322 1221 012455555443
Q ss_pred cchHHHHHHHHHhHHccCccchh
Q 044370 435 SRPKIIRASEIIGRFMDDIKSHK 457 (554)
Q Consensus 435 ~~~~l~~~~~~i~RL~NDI~S~~ 457 (554)
.++-...+...-+.||+..+.
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888889988774
No 36
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=60.32 E-value=55 Score=32.79 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCC-CchhHHhhcccchHHHHHHHHHhHHccCcc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNI-VTKETFDWVFSRPKIIRASEIIGRFMDDIK 454 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~-l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 454 (554)
...+.+-..+..|... ..||.++|...-..-+|..+..++....++.. .+++..+.+ .++-...+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566777777777532 37899999988654444333322222222322 566655543 667778888888999998
Q ss_pred chhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 044370 455 SHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDIN 499 (554)
Q Consensus 455 S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln 499 (554)
.+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 87532 122332 455443 468899999998888886654
No 37
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=57.97 E-value=45 Score=33.56 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCcc
Q 044370 377 ILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIK 454 (554)
Q Consensus 377 ~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 454 (554)
..+.|-..+..|. +..||.++|+..-..-+|..+..++ ..| ++...+++..+.+ .++-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASV-RMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566767677775 3458999999985444443333222 222 2222455555443 566778888888999998
Q ss_pred chhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 455 SHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 455 S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
.+.-+ ...|.. +.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77432 222332 566555 3688899999999988877764
No 38
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=57.59 E-value=1.2e+02 Score=30.66 Aligned_cols=87 Identities=18% Similarity=0.046 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHHhhcccchHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETFDWVFSRPKIIRAS 443 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~ 443 (554)
..+..+.++....+.+-..+..|... ..+|.++|+..-..-+|..+..++. -...| .+++..+.+ .++-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 35666777888888888878776532 3579999999855544444433221 11122 355555443 5667778
Q ss_pred HHHhHHccCccchhh
Q 044370 444 EIIGRFMDDIKSHKF 458 (554)
Q Consensus 444 ~~i~RL~NDI~S~~k 458 (554)
+...-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888888999988754
No 39
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=53.95 E-value=69 Score=32.03 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCcc
Q 044370 377 ILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIK 454 (554)
Q Consensus 377 ~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 454 (554)
..+.+-..+..|. +..||.++|...-..-+|..+..++ ..| ++ ..+++..+. ..++-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4556666666664 3468999999985443443333222 121 12 234544443 3566777888888899998
Q ss_pred chhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 455 SHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 455 S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
.+.-. ...|.. +.+.+| ..+.|.+...++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 77432 223332 555554 3578888889999988877654
No 40
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=53.61 E-value=1.8e+02 Score=28.99 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-hhcCCCCChHHHHhhhhhccchh-HHHHH--HHHhcCCCCchhHHhhcccchHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKW-FHENYIPKMEEYMRVALVTSGYT-MLTTV--SFLGMDNIVTKETFDWVFSRPKIIRA 442 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW-~~~g~iPtleEYl~~r~iS~g~~-~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~ 442 (554)
....+.++....+.+-+.+..| ...+..||.++|++.-..-+|.. +..++ .-...| .+++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH-----HHHHHHH
Confidence 4666778888999999999999 65435689999999866544444 32222 222223 223222 2566777
Q ss_pred HHHHhHHccCccchhh----------HhhhCCCchhHHHHHHhC
Q 044370 443 SEIIGRFMDDIKSHKF----------EQERGHAASAVECYMKQH 476 (554)
Q Consensus 443 ~~~i~RL~NDI~S~~k----------E~~rG~v~n~V~cyMke~ 476 (554)
.+...-+.||+..+.- ....|.. +...+|.-++
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 7888888888887742 2344554 5555665443
No 41
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=51.22 E-value=90 Score=31.75 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhc-CCCCchhHHhhcccchHHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM-DNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.+..+.++....+.+-+.+..|... .-||.++|+..-..-+|..+..++ ..|+ --..+++..+.+ ..+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 4566778888899998888888653 368999999986655555543332 2221 012455555543 667788888
Q ss_pred HhHHccCccchh
Q 044370 446 IGRFMDDIKSHK 457 (554)
Q Consensus 446 i~RL~NDI~S~~ 457 (554)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888999998774
No 42
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=51.18 E-value=93 Score=30.77 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcC--CCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMD--NIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g--~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
...+.+-..+..|... .+|.++|+..-..-+|..+..++ ..|.- -..+++..+. ..++-...+...-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999996554444433222 22210 1134444443 366777888888999999
Q ss_pred cchhhHh-----------hhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 454 KSHKFEQ-----------ERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 454 ~S~~kE~-----------~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
..+.-.. ..|.. +...+|. .+.|.+.+.+.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22333 5554443 477888888989988887765
No 43
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.74 E-value=85 Score=31.60 Aligned_cols=111 Identities=9% Similarity=0.021 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhh-hhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccC
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVA-LVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDD 452 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r-~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 452 (554)
...+.+-..+..|... ..||.++|...- ..|++. +..++ ..| ++ ..+++..+.+ .++-+..+...-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~~a~-~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IKASI-MSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3567777777777543 368999999985 445443 33222 121 11 2355555443 6667778888888999
Q ss_pred ccchhhH-----------hhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 453 IKSHKFE-----------QERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 453 I~S~~kE-----------~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
+..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8877432 222332 455444 3688999999999999887764
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=49.50 E-value=1.4e+02 Score=29.56 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccC
Q 044370 375 MKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDD 452 (554)
Q Consensus 375 w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 452 (554)
....+.+-..+..|. +..||.++|...-..-+|..+..++ ..| ++ ..+++..+. ..++-+..+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445566666666664 3468999999985544444433222 122 11 245554444 36677788888889999
Q ss_pred ccchhhHh-hhCCC-------chhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 453 IKSHKFEQ-ERGHA-------ASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 453 I~S~~kE~-~rG~v-------~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
+..+.-.. ..|+. .+.+.++ ..+.|.+...++++++.+.++.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 98876432 22332 1333332 3578888888888888877653
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=48.59 E-value=60 Score=32.53 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHH-hhcccchHHHHHHHHHhHHccC
Q 044370 376 KILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETF-DWVFSRPKIIRASEIIGRFMDD 452 (554)
Q Consensus 376 ~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~-e~~~~~~~l~~~~~~i~RL~ND 452 (554)
...+.+-..+..|. +..||.++|+..-..-+|..+..++. -+..| .+++.. +.+ ..+-+..+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45666766666765 56789999998855444443322221 11112 344444 433 5677788888889999
Q ss_pred ccchhhH-hhhCCCc-------hhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 453 IKSHKFE-QERGHAA-------SAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 453 I~S~~kE-~~rG~v~-------n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
+..+.-+ ..-|+.. +.+.++ ..+.|.+..+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhhh
Confidence 9888643 2234321 333222 3588888888888888877653
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=41.59 E-value=43 Score=33.17 Aligned_cols=108 Identities=12% Similarity=-0.002 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhHhhcC-CCCChHHHHhhh-hhccchhHHHHH--HHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccC
Q 044370 377 ILVEGYYDESKWFHEN-YIPKMEEYMRVA-LVTSGYTMLTTV--SFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDD 452 (554)
Q Consensus 377 ~~~~a~l~EAkW~~~g-~iPtleEYl~~r-~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 452 (554)
..+.|-..+..|...+ ..+|.++|+..- ..|++. +..++ .-...| .+++..+.+ .++-...+...-+.||
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DD 234 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDD 234 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3566666666664321 246899999884 445443 32221 111123 455555543 6677788888889999
Q ss_pred ccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044370 453 IKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINE 500 (554)
Q Consensus 453 I~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~ 500 (554)
+..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 235 iLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 235 ILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98876443 23555454 3578888888888888876644
No 47
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=37.54 E-value=1.6e+02 Score=30.09 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCC----CCChHHHHhhhhhccchh-HH--HHHHHHhcCCCCchhHHhhcccchHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENY----IPKMEEYMRVALVTSGYT-ML--TTVSFLGMDNIVTKETFDWVFSRPKI 439 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~----iPtleEYl~~r~iS~g~~-~~--~~~~~~~~g~~l~~ev~e~~~~~~~l 439 (554)
.+..+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. +. +.+.-+..| ..+++..+.+ .++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 466677788888999988888876544 389999999876655544 22 222222223 1355555543 677
Q ss_pred HHHHHHHhHHccCccchhhH----------hhhCCCchhHHHHHHhC
Q 044370 440 IRASEIIGRFMDDIKSHKFE----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 440 ~~~~~~i~RL~NDI~S~~kE----------~~rG~v~n~V~cyMke~ 476 (554)
-...+...-+.||+..+.-. ...|.. +.+.++.-+.
T Consensus 253 g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~-T~p~l~al~~ 298 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC-SWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc-cHHHHHHHHh
Confidence 78888899999999887532 223443 6666665544
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=36.68 E-value=1.4e+02 Score=30.41 Aligned_cols=105 Identities=10% Similarity=-0.054 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCC----CCChHHHHhhhhhccchh-HH--HHHHHHhcCCCCchhHHhhcccchHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENY----IPKMEEYMRVALVTSGYT-ML--TTVSFLGMDNIVTKETFDWVFSRPKI 439 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~----iPtleEYl~~r~iS~g~~-~~--~~~~~~~~g~~l~~ev~e~~~~~~~l 439 (554)
.+..+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. +. +.+.-+..|. .+++..+.+ .++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HHH
Confidence 466677778888999888999876543 579999999866555544 22 2222222231 355555443 667
Q ss_pred HHHHHHHhHHccCccchhhH----------hhhCCCchhHHHHHHhC
Q 044370 440 IRASEIIGRFMDDIKSHKFE----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 440 ~~~~~~i~RL~NDI~S~~kE----------~~rG~v~n~V~cyMke~ 476 (554)
-...+...-+.||+..+.-. ...|.. +.+.++.-+.
T Consensus 246 g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~-T~p~l~al~~ 291 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKC-SWLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCc-hHHHHHHHHh
Confidence 78888889999999887543 223433 5665665544
No 49
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=35.57 E-value=1.8e+02 Score=29.68 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCCh-HHHHhhhhhccchh-H--HHHHHHHhcCCCCchhH--HhhcccchHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKM-EEYMRVALVTSGYT-M--LTTVSFLGMDNIVTKET--FDWVFSRPKII 440 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtl-eEYl~~r~iS~g~~-~--~~~~~~~~~g~~l~~ev--~e~~~~~~~l~ 440 (554)
.+..+.++....+.|-+.+..|...+..+++ ++|+..-..-+|.. + .+.+..+..| .+++. .+. ...+-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag--~~~~~~~~~~---l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE--IQVSSAQLNL---IEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC--CCCCCSSTTT---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC--CChhHHHHHH---HHHHH
Confidence 4666778888899999988888766634455 99998855544443 2 2222223334 23333 332 36677
Q ss_pred HHHHHHhHHccCccchh
Q 044370 441 RASEIIGRFMDDIKSHK 457 (554)
Q Consensus 441 ~~~~~i~RL~NDI~S~~ 457 (554)
...+...-+.||+..+.
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888999998775
No 50
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=34.94 E-value=1.4e+02 Score=30.32 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh-----------hcCC----CCChHHHHhhhhhccchh-HHH--HHHHHhcCCCCchh
Q 044370 367 RVQYAKEAMKILVEGYYDESKWF-----------HENY----IPKMEEYMRVALVTSGYT-MLT--TVSFLGMDNIVTKE 428 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~-----------~~g~----iPtleEYl~~r~iS~g~~-~~~--~~~~~~~g~~l~~e 428 (554)
....+.+.....+.|-..+..|. ..|. .+|.++|+..-..-+|.. +.. .+.-+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 46667778888899999898887 3223 489999999866555544 222 22222223 12344
Q ss_pred HHhhcccchHHHHHHHHHhHHccCccchhhH----------hhhCCCchhHHHHHHhC
Q 044370 429 TFDWVFSRPKIIRASEIIGRFMDDIKSHKFE----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 429 v~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE----------~~rG~v~n~V~cyMke~ 476 (554)
..+. ..++-...++..-+.||+..+.-. ...|.. +...+|.-++
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 4433 356777888888899999887532 223443 6666666554
No 51
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=33.55 E-value=2.1e+02 Score=28.16 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHH-hcCCCCchhHHhhcccchHHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFL-GMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~-~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
....+.++....+.|-..+..| .++|++.-..-+|..+..++..- .++ .+++..+.+ .++-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 4556667777777777665554 68898876655554443222111 123 455555443 566777888
Q ss_pred HhHHccCccchhhH----hhhCCCchhHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHh
Q 044370 446 IGRFMDDIKSHKFE----QERGHAASAVECYMKQHGLSEQEV-CEELYRQVSNAWKDINE 500 (554)
Q Consensus 446 i~RL~NDI~S~~kE----~~rG~v~n~V~cyMke~g~S~EeA-~~~i~~~i~~~~k~ln~ 500 (554)
..-+.||+..+.-+ ...|. .+...+| . ..+.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889998887432 22232 3666666 3 2345777 44567777777766644
No 52
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=33.21 E-value=32 Score=25.08 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhccCCC-cchhHHHHHHHh
Q 044370 49 KELKALKEEVGRKLLATAGP-IQLNLIDAIQRL 80 (554)
Q Consensus 49 ~~~~~lk~~v~~~l~~~~~~-~~l~liD~lqrL 80 (554)
+++.=|.+|||+.|..+.+. +++-+..+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 45666888999988877788 999999988865
No 53
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=33.12 E-value=3.7e+02 Score=26.61 Aligned_cols=100 Identities=9% Similarity=0.029 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHHhhcccchHHHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
....+.++....+.|-+.+..|.. +..||.++|++.-..-+|..+..++. -...|.. .+ ....+-...+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~-----~~---~l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD-----AK---IYADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC-----HH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC-----HH---HHHHHHHHHH
Confidence 456677788888999998888864 34689999998765555544432221 1122322 12 2355667778
Q ss_pred HHhHHccCccchhhH-----------hhhCCCchhHHHHHHhC
Q 044370 445 IIGRFMDDIKSHKFE-----------QERGHAASAVECYMKQH 476 (554)
Q Consensus 445 ~i~RL~NDI~S~~kE-----------~~rG~v~n~V~cyMke~ 476 (554)
...-+.||+..+.-. ...|.. +...+|.-++
T Consensus 194 ~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 194 MAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 888888888776432 223443 6666666554
No 54
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=29.59 E-value=21 Score=40.57 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhh
Q 044370 23 NFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLL 63 (554)
Q Consensus 23 ~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 63 (554)
+|+|++|++.++............+.++++.|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 68999999999974222111122456788999999999995
No 55
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=28.73 E-value=1.2e+02 Score=30.58 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcC--CCCChHHHHhhhhhccchhHHHHHHH--HhcCCCCchhHHhhcccchHHHHH
Q 044370 367 RVQYAKEAMKILVEGYYDESKWFHEN--YIPKMEEYMRVALVTSGYTMLTTVSF--LGMDNIVTKETFDWVFSRPKIIRA 442 (554)
Q Consensus 367 ~~~~~~~~w~~~~~a~l~EAkW~~~g--~iPtleEYl~~r~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~ 442 (554)
....+.+.....+.+-..+..|.... ..||.++|+..-..-+|..+..++.. ...| .++ .. .....+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~-~~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSH-HG---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcH-HH---HHHHHHHHH
Confidence 45556777888888988899997655 57899999998766555444333221 1122 222 12 234677888
Q ss_pred HHHHhHHccCccchhh
Q 044370 443 SEIIGRFMDDIKSHKF 458 (554)
Q Consensus 443 ~~~i~RL~NDI~S~~k 458 (554)
.+...-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8999999999987753
No 56
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.58 E-value=2.7e+02 Score=27.38 Aligned_cols=84 Identities=15% Similarity=-0.032 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHH--HHhcCCCCchhHHhhcccchHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVS--FLGMDNIVTKETFDWVFSRPKIIRAS 443 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~ 443 (554)
.....+.++....+.+-..+..|.... ||.++|+..-..-+|..+..++. -...|. ++ +. ...+-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~---~~---l~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LG---ED---LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CC---HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CH---HH---HHHHHHHH
Confidence 456777888899999999999997654 99999998866655554332221 111232 22 22 24556777
Q ss_pred HHHhHHccCccchhhH
Q 044370 444 EIIGRFMDDIKSHKFE 459 (554)
Q Consensus 444 ~~i~RL~NDI~S~~kE 459 (554)
+...-+.||+..+.-+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 7788888888877543
No 57
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=28.04 E-value=2.9e+02 Score=27.11 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh-cCCCCchhHHhhcccchHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG-MDNIVTKETFDWVFSRPKIIRASE 444 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~ 444 (554)
.....+.+.+...+.+-..+..|......||.++|+..-..-+|..+..++..-+ ++. .++ ...++-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 3456678888899999999999987666899999999877655544433322111 111 121 2356777888
Q ss_pred HHhHHccCccchh
Q 044370 445 IIGRFMDDIKSHK 457 (554)
Q Consensus 445 ~i~RL~NDI~S~~ 457 (554)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888999988764
No 58
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=26.71 E-value=1.6e+02 Score=29.32 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHH
Q 044370 366 YRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEI 445 (554)
Q Consensus 366 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 445 (554)
.....+.++....+.|-..+..|... ..||.++|+..-..-+|..+..++..-++--..+++..+. ..++-...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYH---IKQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 35666777888889999888888653 3589999999876655555433322111111245555544 3667788888
Q ss_pred HhHHccCccchhh
Q 044370 446 IGRFMDDIKSHKF 458 (554)
Q Consensus 446 i~RL~NDI~S~~k 458 (554)
..-+.||+..+.-
T Consensus 206 afQi~DD~ld~~~ 218 (325)
T 3aqb_B 206 SYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 8889999988753
No 59
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=25.68 E-value=95 Score=30.37 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHhhcCCCCChHHHHhhhhhccchhHHHHHHHHh--cCCCCchhHHhhcccchHHHHHHHHHhHHccCc
Q 044370 377 ILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLG--MDNIVTKETFDWVFSRPKIIRASEIIGRFMDDI 453 (554)
Q Consensus 377 ~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 453 (554)
..+.+-..+..|... .||.++|...-..-+|..+..++ ..| ++ ..+++..+.+ .++-+..++..-+.||+
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~-~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGA-ACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 346666666677543 78999999864444444333222 222 12 2455555443 66777788888888987
No 60
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.75 E-value=71 Score=25.03 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 044370 476 HGLSEQEVCEELYRQVSNAWKDI 498 (554)
Q Consensus 476 ~g~S~EeA~~~i~~~i~~~~k~l 498 (554)
||++.+||+..+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 61
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=20.82 E-value=93 Score=31.80 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCC-ChHHHHhhhh-hccchh--HHHHHHHHhcCCCCchhHHhhcccchHHHHHH
Q 044370 368 VQYAKEAMKILVEGYYDESKWFHENYIP-KMEEYMRVAL-VTSGYT--MLTTVSFLGMDNIVTKETFDWVFSRPKIIRAS 443 (554)
Q Consensus 368 ~~~~~~~w~~~~~a~l~EAkW~~~g~iP-tleEYl~~r~-iS~g~~--~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~ 443 (554)
...+.++....+.+-..+-.|...+..+ |.++|++.-. -|+++- .++..+....|...+++..+. ...+-...
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~---l~~~g~~l 246 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNL---IEAILYKL 246 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTT---HHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHH---HHHHHHHH
Confidence 4445566666777777777787666554 7889998744 455442 223333344454555555443 35677788
Q ss_pred HHHhHHccCccchhh
Q 044370 444 EIIGRFMDDIKSHKF 458 (554)
Q Consensus 444 ~~i~RL~NDI~S~~k 458 (554)
+...-+.||+..+-.
T Consensus 247 G~aFQI~DDiLD~~~ 261 (368)
T 2q58_A 247 GEFYQVHNDVSDYLF 261 (368)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhccc
Confidence 888889999987643
Done!