BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044375
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected
Pictet-Spenglerase Ac-Tivity Of Strictosidine Synthase
(Str1): From The Common Tryp-Toline Skeleton To The
Rare Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected
Pictet-Spenglerase Ac-Tivity Of Strictosidine Synthase
(Str1): From The Common Tryp-Toline Skeleton To The
Rare Piperazino-Indole Framework
Length = 322
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P S FD G YT V +GR++K++G G+ +FA +
Sbjct: 18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS 59
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P S FD G YT V +GR++K++G G+ +FA +
Sbjct: 9 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS 50
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P S FD G YT V +GR+ K++G G+ +FA +
Sbjct: 18 SYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYAS 59
>pdb|1SIU|A Chain A, Kumamolisin-As E78h Mutant
Length = 364
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 53 IQVTGALGPES---IAFDPNGDGPYTGVANGRI-----------LKWQGDELGWTEFAVT 98
I+V GAL P + + F PN D + I + W G E WT A+
Sbjct: 83 IEVAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIA 142
Query: 99 TSQR 102
R
Sbjct: 143 AMNR 146
>pdb|1SIO|A Chain A, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|B Chain B, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|C Chain C, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SN7|A Chain A, Kumamolisin-As, Apoenzyme
Length = 364
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 53 IQVTGALGPES---IAFDPNGDGPYTGVANGRI-----------LKWQGDELGWTEFAVT 98
I+V GAL P + + F PN D + I + W G E WT A+
Sbjct: 83 IEVAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIA 142
Query: 99 TSQR 102
R
Sbjct: 143 AMNR 146
>pdb|1ZVK|A Chain A, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
pdb|1ZVK|B Chain B, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
Length = 358
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 53 IQVTGALGPES---IAFDPNGDGPYTGVANGRI-----------LKWQGDELGWTEFAVT 98
I+V GAL P + + F PN D + I + W G E WT A+
Sbjct: 83 IEVAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIA 142
Query: 99 TSQR 102
R
Sbjct: 143 AMNR 146
>pdb|1ZVJ|A Chain A, Structure Of Kumamolisin-As Mutant, D164n
Length = 364
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 53 IQVTGALGPES---IAFDPNGDGPYTGVANGRI-----------LKWQGDELGWTEFAVT 98
I+V GAL P + + F PN D + I + W G E WT A+
Sbjct: 83 IEVAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIA 142
Query: 99 TSQR 102
R
Sbjct: 143 AMNR 146
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 27 TNTTLRNLFCAPC---IEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRIL 83
T + + CA C IEG + LEG + I V+ A G ++ ++P V + L
Sbjct: 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNP-------AVISPEEL 176
Query: 84 KWQGDELGWTEFAVTTS 100
+ +++G+ V+ S
Sbjct: 177 RAAIEDMGFEASVVSES 193
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 50 SRIIQVTGALGPESIAFDP-NGDGPYTGVANGRILKWQGDELGWTEFAVTTSQRCGCLL 107
S +++ A+G I +P NG +TG N I ++QG + TTSQ G L
Sbjct: 271 SVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVA----EPTTSQNSGTAL 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,016,824
Number of Sequences: 62578
Number of extensions: 117646
Number of successful extensions: 306
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 9
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)