BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044375
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2
Length = 335
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 60 GPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
GPE+ AFD G G YTGV+ G+ILK+ E G+ +FA T
Sbjct: 38 GPEAFAFDSTGKGFYTGVSGGKILKYL-PETGYVDFAQIT 76
>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 60 GPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQRCGCL 106
GPE+ AFD G G YTGV G+ILK+ + G+ +FA T+ L
Sbjct: 40 GPEAFAFDSTGKGFYTGVTGGKILKYL-PKKGYVDFAQITNSSKSSL 85
>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2
Length = 352
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P + FD G YT V +GR++K++G G+T+FA +
Sbjct: 44 SYAPNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYAS 85
>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1
Length = 344
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P S FD G YT V +GR++K++G G+ +FA +
Sbjct: 40 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS 81
>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1
PE=3 SV=1
Length = 342
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 58 ALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99
+ P S FD G YT V +GR++K++G G+ +FA +
Sbjct: 38 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS 79
>sp|Q21DT6|KATG_SACD2 Catalase-peroxidase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=katG PE=3 SV=1
Length = 738
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 38 PCIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGW 92
P + NNL S ++ + G +G E + F P G A GR +W+ +E+ W
Sbjct: 147 PIKQKYGNNLSWSDLLVLAGTIGMEDMGF------PIVGFAFGRDDEWEPEEVNW 195
>sp|Q5GA85|L_TAVCV RNA-directed RNA polymerase L OS=Taro vein chlorosis virus GN=L
PE=3 SV=1
Length = 1928
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 18 VSVIISIN--QTNTTLRNLFCAPCIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDG--- 72
V+VI +++ + N +R + C+P + +T L ES+ + +G+G
Sbjct: 596 VTVIFNLDFVKWNLQMRKIICSPVFTQLGALFGMPNLFDITHDLFRESVIYLCSGEGDLR 655
Query: 73 --PYTGVANGRILKWQGDE--------LGWTEFAVTT 99
P GVA + W GDE GWT V T
Sbjct: 656 GDPVFGVAPDGVWSWTGDESGKEGLRQKGWTILTVVT 692
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 47 LEGSRIIQVTGALGP-ESIAFDPNGDGPYTGVANGRILKW 85
L G+ + TG GP S+ F PNG TG +GR+L W
Sbjct: 658 LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 697
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 47 LEGSRIIQVTGALGP-ESIAFDPNGDGPYTGVANGRILKW 85
L G+ + TG GP S+ F PNG TG +GR+L W
Sbjct: 657 LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 696
>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar
GN=apmap PE=2 SV=1
Length = 416
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 39 CIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDEL 90
C E + E R+ + +GPESIA GD YTG A+G+I+K +G +
Sbjct: 80 CYEPNFKLREAQRLFE-DQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSI 128
>sp|P97499|TEP1_MOUSE Telomerase protein component 1 OS=Mus musculus GN=Tep1 PE=1 SV=1
Length = 2629
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 47 LEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRI 82
L+G + + +T + P ++AF PNG G A+G I
Sbjct: 1672 LKGQQSLSLTMSSSPTAVAFSPNGQRAAVGTASGTI 1707
>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus
GN=APMAP PE=2 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 44 NNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDEL 90
NN L+ + + +GPESI GD +TG A+G+ILK + E+
Sbjct: 84 NNKLQKAERLWENQLVGPESIV--NIGDVLFTGTADGKILKIEDGEV 128
>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens
GN=APMAP PE=1 SV=2
Length = 416
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDEL 90
+GPESIA GD +TG A+GR++K + E+
Sbjct: 100 VGPESIAHI--GDVMFTGTADGRVVKLENGEI 129
>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP
PE=2 SV=1
Length = 412
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDEL 90
+GPESIA GD +TG A+GR++K + E+
Sbjct: 99 VGPESIA--NIGDVMFTGTADGRVVKLENGEV 128
>sp|Q59105|NOSZ_CUPNH Nitrous-oxide reductase OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=nosZ PE=3 SV=1
Length = 643
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 41 EGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGD 88
+G L+ + + +V LGP AFD G+ T + +++KW D
Sbjct: 375 DGKQEKLDDAIVAEVELGLGPLHTAFDGRGNAYTTLFLDSQLVKWNLD 422
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 23 SINQTNTTLRNLFCAPCIEGSNNNLEGSRIIQVTGALGPESIAFD-------PNGDGPYT 75
S +Q N ++ L C+E + E S+I+Q A E +A+D P G T
Sbjct: 3919 STSQVNKIIQLLAQKYCVESRTSFEELSKIVQKVKACRSELVAYDRQQQDQPPVNPGSTT 3978
Query: 76 GVANGRILKWQGDELGWTEFAVT 98
G N + G L TE +T
Sbjct: 3979 GAENPTTNRCYGCALASTEQCLT 4001
>sp|Q03YQ2|SYA_LEUMM Alanine--tRNA ligase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=alaS PE=3
SV=1
Length = 893
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 20 VIISINQTNTTLRNLFCAPCIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVAN 79
+ +S N T T + ++ S N+ G + Q + PE + FD N +GP +
Sbjct: 575 IAVSKNHTATHM--------LDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDL 626
Query: 80 GRILKWQGDELG------WTEFAVTTSQRCGCLLLAREK 112
+I E+ W E + ++++ G + + EK
Sbjct: 627 DKIESMMNQEIAKNLPVTWLETDIESAKKLGAVAVFGEK 665
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,649,541
Number of Sequences: 539616
Number of extensions: 1549930
Number of successful extensions: 3153
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3145
Number of HSP's gapped (non-prelim): 18
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)