Query 044375
Match_columns 116
No_of_seqs 118 out of 238
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 99.4 4.4E-13 9.5E-18 113.5 9.6 102 2-108 2-105 (376)
2 KOG1520 Predicted alkaloid syn 92.3 0.28 6.1E-06 42.3 5.1 47 40-87 46-93 (376)
3 PF00400 WD40: WD domain, G-be 91.8 0.25 5.4E-06 27.1 2.9 28 59-86 12-39 (39)
4 PF08450 SGL: SMP-30/Gluconola 91.1 0.57 1.2E-05 35.5 5.2 40 56-96 180-221 (246)
5 PF13449 Phytase-like: Esteras 90.3 0.49 1.1E-05 38.5 4.5 44 57-100 145-206 (326)
6 TIGR02604 Piru_Ver_Nterm putat 89.3 0.91 2E-05 37.3 5.4 49 50-99 4-71 (367)
7 TIGR02604 Piru_Ver_Nterm putat 88.6 0.72 1.6E-05 37.9 4.3 39 59-98 124-182 (367)
8 smart00135 LY Low-density lipo 85.6 2.6 5.5E-05 23.2 4.3 37 53-89 3-40 (43)
9 PRK11028 6-phosphogluconolacto 80.2 5.3 0.00012 31.4 5.6 43 44-88 22-65 (330)
10 PF10282 Lactonase: Lactonase, 80.1 3 6.6E-05 33.7 4.3 52 44-96 278-332 (345)
11 TIGR03866 PQQ_ABC_repeats PQQ- 79.9 2.8 6.1E-05 30.8 3.7 33 59-91 249-282 (300)
12 PF08450 SGL: SMP-30/Gluconola 78.0 1.8 3.9E-05 32.8 2.2 29 61-89 2-31 (246)
13 smart00320 WD40 WD40 repeats. 77.4 3.4 7.3E-05 19.6 2.5 25 61-85 15-39 (40)
14 PF01436 NHL: NHL repeat; Int 76.9 2.5 5.3E-05 23.0 2.0 25 59-84 2-27 (28)
15 PRK11028 6-phosphogluconolacto 75.4 5.1 0.00011 31.5 4.2 31 58-88 174-205 (330)
16 KOG0315 G-protein beta subunit 74.4 2.6 5.7E-05 35.5 2.5 44 62-105 87-131 (311)
17 TIGR03606 non_repeat_PQQ dehyd 73.0 6.3 0.00014 34.6 4.6 21 59-80 146-166 (454)
18 TIGR03300 assembly_YfgL outer 72.1 25 0.00054 28.2 7.5 24 64-89 61-84 (377)
19 smart00564 PQQ beta-propeller 70.5 8.5 0.00018 20.4 3.2 20 69-89 6-25 (33)
20 KOG1354 Serine/threonine prote 69.7 4.2 9.1E-05 35.7 2.7 29 61-89 28-56 (433)
21 PF07995 GSDH: Glucose / Sorbo 69.3 3.5 7.6E-05 33.7 2.1 24 60-84 307-331 (331)
22 PF07995 GSDH: Glucose / Sorbo 69.1 6 0.00013 32.3 3.4 30 59-89 2-31 (331)
23 PRK13684 Ycf48-like protein; P 67.5 39 0.00084 27.7 7.8 37 59-96 46-82 (334)
24 cd00200 WD40 WD40 domain, foun 67.5 4.7 0.0001 28.0 2.2 28 59-86 262-289 (289)
25 PF06977 SdiA-regulated: SdiA- 67.4 4.8 0.0001 32.4 2.5 27 58-85 221-247 (248)
26 KOG0318 WD40 repeat stress pro 66.9 5.2 0.00011 36.5 2.8 30 59-88 321-350 (603)
27 COG3386 Gluconolactonase [Carb 66.3 9.4 0.0002 31.6 4.1 40 49-88 153-193 (307)
28 TIGR03866 PQQ_ABC_repeats PQQ- 66.0 12 0.00027 27.4 4.3 31 59-89 157-188 (300)
29 COG3386 Gluconolactonase [Carb 65.0 11 0.00024 31.1 4.3 39 59-100 213-253 (307)
30 KOG0291 WD40-repeat-containing 62.1 12 0.00027 35.6 4.3 34 62-96 354-389 (893)
31 KOG1036 Mitotic spindle checkp 61.3 4.8 0.0001 34.4 1.5 36 62-97 236-272 (323)
32 PF13570 PQQ_3: PQQ-like domai 61.2 8 0.00017 21.9 2.0 24 63-88 16-39 (40)
33 cd00200 WD40 WD40 domain, foun 60.2 13 0.00028 25.8 3.3 29 61-89 12-40 (289)
34 PF14517 Tachylectin: Tachylec 59.7 6.8 0.00015 31.7 2.0 55 40-95 62-116 (229)
35 TIGR03606 non_repeat_PQQ dehyd 58.3 23 0.0005 31.1 5.2 33 56-89 27-60 (454)
36 PF05787 DUF839: Bacterial pro 57.5 23 0.0005 31.4 5.1 50 51-100 342-418 (524)
37 PF14517 Tachylectin: Tachylec 57.2 6.9 0.00015 31.7 1.7 38 48-86 119-156 (229)
38 TIGR02608 delta_60_rpt delta-6 57.0 18 0.0004 23.0 3.3 28 63-90 5-39 (55)
39 PF06739 SBBP: Beta-propeller 53.8 11 0.00023 22.0 1.7 21 59-80 13-34 (38)
40 KOG3616 Selective LIM binding 53.7 8.4 0.00018 37.4 1.9 41 59-101 56-96 (1636)
41 PLN02919 haloacid dehalogenase 53.5 24 0.00052 33.8 4.8 39 59-98 804-843 (1057)
42 KOG1273 WD40 repeat protein [G 53.0 11 0.00024 32.8 2.3 25 65-89 160-184 (405)
43 PF07172 GRP: Glycine rich pro 52.5 16 0.00035 25.6 2.7 8 1-9 1-8 (95)
44 PF10282 Lactonase: Lactonase, 51.7 25 0.00054 28.4 4.1 42 47-88 180-222 (345)
45 PLN00181 protein SPA1-RELATED; 50.3 17 0.00036 32.9 3.1 26 62-87 487-512 (793)
46 KOG2445 Nuclear pore complex c 49.9 15 0.00032 31.8 2.6 38 62-100 17-54 (361)
47 COG5226 CEG1 mRNA capping enzy 48.1 17 0.00037 31.6 2.7 37 59-96 218-254 (404)
48 KOG2110 Uncharacterized conser 46.1 27 0.00058 30.6 3.6 36 60-95 174-212 (391)
49 KOG0296 Angio-associated migra 44.3 35 0.00077 29.9 4.1 34 65-99 197-230 (399)
50 COG3211 PhoX Predicted phospha 44.2 32 0.0007 31.8 4.0 53 50-102 408-484 (616)
51 PLN02919 haloacid dehalogenase 44.2 52 0.0011 31.6 5.5 35 58-92 739-774 (1057)
52 KOG1188 WD40 repeat protein [G 44.1 13 0.00028 32.3 1.4 38 63-100 321-358 (376)
53 KOG0646 WD40 repeat protein [G 43.9 17 0.00036 32.6 2.1 29 59-87 218-246 (476)
54 PTZ00421 coronin; Provisional 43.6 30 0.00065 30.3 3.6 28 62-89 79-107 (493)
55 KOG0275 Conserved WD40 repeat- 42.7 20 0.00043 31.7 2.3 38 50-87 205-242 (508)
56 PF04879 Molybdop_Fe4S4: Molyb 42.3 27 0.0006 21.0 2.3 21 70-90 14-34 (55)
57 KOG0301 Phospholipase A2-activ 40.9 27 0.00059 32.8 3.0 29 64-93 265-293 (745)
58 KOG0289 mRNA splicing factor [ 39.9 52 0.0011 29.7 4.5 56 46-101 420-475 (506)
59 PF13449 Phytase-like: Esteras 39.7 39 0.00084 27.5 3.5 30 60-90 86-122 (326)
60 PF02239 Cytochrom_D1: Cytochr 39.5 36 0.00078 28.5 3.3 31 61-91 39-69 (369)
61 KOG0288 WD40 repeat protein Ti 39.1 31 0.00068 30.7 3.0 29 63-91 392-420 (459)
62 PTZ00421 coronin; Provisional 39.0 36 0.00078 29.8 3.4 29 61-89 171-199 (493)
63 KOG0263 Transcription initiati 38.0 29 0.00063 32.5 2.8 38 51-89 570-608 (707)
64 KOG0282 mRNA splicing factor [ 37.0 30 0.00065 31.2 2.6 26 61-86 435-460 (503)
65 COG2706 3-carboxymuconate cycl 36.4 32 0.0007 29.7 2.6 46 42-87 174-220 (346)
66 PLN00033 photosystem II stabil 36.3 1.7E+02 0.0036 25.2 6.9 34 62-96 91-126 (398)
67 COG3391 Uncharacterized conser 36.0 1.1E+02 0.0024 25.4 5.7 35 60-94 117-154 (381)
68 PRK15396 murein lipoprotein; P 35.3 40 0.00088 23.1 2.5 12 1-12 1-12 (78)
69 cd02773 MopB_Res-Cmplx1_Nad11 34.8 65 0.0014 26.3 4.1 24 65-88 5-28 (375)
70 COG4257 Vgb Streptogramin lyas 34.7 69 0.0015 27.7 4.3 46 50-95 180-225 (353)
71 PF07569 Hira: TUP1-like enhan 33.5 63 0.0014 25.2 3.7 41 62-103 70-115 (219)
72 KOG2048 WD40 repeat protein [G 33.2 37 0.0008 31.8 2.6 32 63-95 159-190 (691)
73 COG3117 Uncharacterized protei 32.8 1.1E+02 0.0024 24.3 4.9 21 59-79 45-65 (188)
74 COG5170 CDC55 Serine/threonine 32.8 44 0.00095 29.4 2.9 27 63-91 31-59 (460)
75 KOG1407 WD40 repeat protein [F 32.4 26 0.00056 29.8 1.4 25 63-87 194-218 (313)
76 PF03100 CcmE: CcmE; InterPro 32.3 35 0.00076 24.7 1.9 22 49-70 49-70 (131)
77 KOG1272 WD40-repeat-containing 32.1 48 0.001 30.2 3.1 39 62-101 297-335 (545)
78 KOG1273 WD40 repeat protein [G 32.0 44 0.00096 29.2 2.8 31 61-91 26-56 (405)
79 COG2133 Glucose/sorbosone dehy 31.6 49 0.0011 28.8 3.0 30 60-89 368-398 (399)
80 KOG1446 Histone H3 (Lys4) meth 31.1 1.1E+02 0.0023 26.2 4.9 39 61-100 235-273 (311)
81 KOG0266 WD40 repeat-containing 30.7 53 0.0011 27.9 3.0 29 62-90 292-320 (456)
82 COG3168 PilP Tfp pilus assembl 30.7 37 0.00081 26.6 1.9 18 71-88 125-142 (170)
83 PF01011 PQQ: PQQ enzyme repea 30.5 1E+02 0.0023 17.2 3.7 27 73-100 3-29 (38)
84 PF00780 CNH: CNH domain; Int 29.5 76 0.0016 24.1 3.5 32 66-98 3-35 (275)
85 COG3204 Uncharacterized protei 29.4 56 0.0012 27.9 2.9 31 57-88 282-312 (316)
86 PF05907 DUF866: Eukaryotic pr 29.1 62 0.0013 24.5 2.9 39 59-97 103-142 (161)
87 KOG0271 Notchless-like WD40 re 28.9 50 0.0011 29.5 2.6 27 63-89 162-188 (480)
88 KOG1963 WD40 repeat protein [G 28.9 49 0.0011 31.5 2.7 29 63-91 256-284 (792)
89 KOG0319 WD40-repeat-containing 28.8 44 0.00095 31.7 2.4 25 64-88 595-619 (775)
90 KOG0315 G-protein beta subunit 28.7 55 0.0012 27.8 2.7 43 63-107 263-307 (311)
91 KOG4058 Uncharacterized conser 28.5 30 0.00065 27.5 1.1 40 35-84 49-88 (199)
92 KOG0272 U4/U6 small nuclear ri 28.5 46 0.00099 29.8 2.3 29 62-90 349-377 (459)
93 PTZ00420 coronin; Provisional 28.2 75 0.0016 28.7 3.7 30 60-89 169-198 (568)
94 KOG0646 WD40 repeat protein [G 27.6 50 0.0011 29.7 2.4 23 64-86 129-151 (476)
95 PF03022 MRJP: Major royal jel 27.1 1.3E+02 0.0028 24.3 4.5 39 62-100 189-231 (287)
96 KOG4499 Ca2+-binding protein R 27.0 1.1E+02 0.0024 25.9 4.2 48 57-105 210-259 (310)
97 KOG0279 G protein beta subunit 26.8 1.5E+02 0.0032 25.5 4.9 50 61-110 66-126 (315)
98 PRK13684 Ycf48-like protein; P 26.3 91 0.002 25.5 3.6 35 60-95 261-295 (334)
99 smart00284 OLF Olfactomedin-li 26.2 89 0.0019 25.6 3.5 37 63-99 132-172 (255)
100 COG4257 Vgb Streptogramin lyas 26.1 99 0.0022 26.7 3.8 51 47-97 50-100 (353)
101 KOG0296 Angio-associated migra 25.8 1E+02 0.0022 27.1 4.0 41 60-102 329-369 (399)
102 KOG1274 WD40 repeat protein [G 25.6 58 0.0013 31.5 2.6 28 60-87 15-42 (933)
103 KOG0286 G-protein beta subunit 25.5 1.2E+02 0.0027 26.1 4.3 32 56-87 271-302 (343)
104 KOG2919 Guanine nucleotide-bin 25.5 57 0.0012 28.6 2.3 41 65-107 304-344 (406)
105 PF03088 Str_synth: Strictosid 25.5 68 0.0015 22.1 2.3 36 53-88 51-87 (89)
106 PLN00181 protein SPA1-RELATED; 25.3 73 0.0016 28.8 3.1 27 62-88 712-738 (793)
107 PF07494 Reg_prop: Two compone 25.2 66 0.0014 16.7 1.8 15 63-78 9-23 (24)
108 KOG4283 Transcription-coupled 25.0 41 0.00088 29.3 1.3 18 71-88 202-219 (397)
109 KOG0318 WD40 repeat stress pro 25.0 1.2E+02 0.0027 28.0 4.4 47 56-102 441-487 (603)
110 KOG0642 Cell-cycle nuclear pro 24.3 47 0.001 30.5 1.7 30 60-89 533-562 (577)
111 KOG0319 WD40-repeat-containing 23.2 1.2E+02 0.0025 29.0 4.0 39 59-98 105-144 (775)
112 TIGR02658 TTQ_MADH_Hv methylam 23.1 1.3E+02 0.0028 25.6 4.0 31 59-89 299-331 (352)
113 KOG2106 Uncharacterized conser 22.6 1E+02 0.0022 28.5 3.5 28 63-91 251-278 (626)
114 PRK02888 nitrous-oxide reducta 22.5 1E+02 0.0022 28.7 3.4 31 58-89 374-405 (635)
115 KOG2096 WD40 repeat protein [G 22.5 90 0.0019 27.5 2.9 28 62-89 90-117 (420)
116 PF00058 Ldl_recept_b: Low-den 22.2 54 0.0012 19.1 1.1 19 50-68 24-42 (42)
117 PTZ00420 coronin; Provisional 22.1 1.1E+02 0.0025 27.5 3.7 29 60-88 76-105 (568)
118 PF14870 PSII_BNR: Photosynthe 22.0 1.3E+02 0.0028 24.9 3.8 36 59-95 233-268 (302)
119 KOG0308 Conserved WD40 repeat- 21.8 56 0.0012 30.8 1.7 19 68-86 35-53 (735)
120 KOG2055 WD40 repeat protein [G 21.6 86 0.0019 28.4 2.7 28 62-89 348-375 (514)
121 KOG2114 Vacuolar assembly/sort 21.5 1.1E+02 0.0023 29.8 3.5 32 55-87 20-52 (933)
122 KOG0772 Uncharacterized conser 21.0 91 0.002 28.9 2.8 46 42-87 297-346 (641)
123 COG1520 FOG: WD40-like repeat 21.0 1.3E+02 0.0029 24.3 3.6 34 65-100 64-97 (370)
124 PF15016 DUF4520: Domain of un 20.9 64 0.0014 22.4 1.5 22 65-88 11-32 (85)
125 cd02774 MopB_Res-Cmplx1_Nad11- 20.9 1.3E+02 0.0029 25.2 3.7 27 62-88 1-28 (366)
126 PRK12750 cpxP periplasmic repr 20.2 1.1E+02 0.0023 23.4 2.7 23 1-23 1-23 (170)
127 KOG4378 Nuclear protein COP1 [ 20.1 83 0.0018 29.1 2.4 28 62-89 254-281 (673)
128 PF01403 Sema: Sema domain; I 20.1 85 0.0018 26.4 2.3 23 62-84 367-395 (433)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.45 E-value=4.4e-13 Score=113.46 Aligned_cols=102 Identities=28% Similarity=0.480 Sum_probs=72.3
Q ss_pred CchhhHHHHHHHHHHHHHhhhhcccCcCccCCCCCCccccCccccccCceeeccCCCCCCCceeecCCCCcceEEeecce
Q 044375 2 NRNKKIVASAAIVIAIVSVIISINQTNTTLRNLFCAPCIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGR 81 (116)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~f~~~~i~a~N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGr 81 (116)
+.+..++...++..++..++..+..+.+.+.|.+ ..-.+..+..++++...+.|||+++||+.|+|||+|++|||
T Consensus 2 ~~~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~ 76 (376)
T KOG1520|consen 2 MASRFLFLFIFLFLAVIILLYLLSGSSIAGSPDD-----RLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVDGR 76 (376)
T ss_pred CcchhhhHHHHHHHHHHHhhhccCcccccCCchh-----cccCCCCcccccccccccCChhhheecccCCCceEEEECCc
Confidence 3433444433313334444444555554433332 22233445677788888899999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEc--CCCcccccCc
Q 044375 82 ILKWQGDELGWTEFAVT--TSQRCGCLLL 108 (116)
Q Consensus 82 IlR~~~~~~~w~~fA~T--s~~r~~C~~~ 108 (116)
|++|.+...+|.+|+++ |++++.|+.+
T Consensus 77 il~~~g~~~Gwv~~~~~~~s~~~~~~~~~ 105 (376)
T KOG1520|consen 77 ILKYTGNDDGWVKFADTKDSTNRSQCCDP 105 (376)
T ss_pred eEEEeccCceEEEEEeccccccccccCCC
Confidence 99999988899999999 9999988864
No 2
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.29 E-value=0.28 Score=42.33 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=33.9
Q ss_pred ccCccccccCceeeccCCCC-CCCceeecCCCCcceEEeecceEEEEeC
Q 044375 40 IEGSNNNLEGSRIIQVTGAL-GPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 40 i~a~N~~L~~ae~l~~~~~~-GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
-..+|+.+.+.|.+..++.. ||+..+.|..- -.|||..+|||.+.+.
T Consensus 46 ~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~i-l~~~g~~~Gwv~~~~~ 93 (376)
T KOG1520|consen 46 KLIPNNHLTGPESLLFDPQGGGPYTGVVDGRI-LKYTGNDDGWVKFADT 93 (376)
T ss_pred ccccccccCChhhheecccCCCceEEEECCce-EEEeccCceEEEEEec
Confidence 44677778888888886555 55555554332 3899999999999876
No 3
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.77 E-value=0.25 Score=27.12 Aligned_cols=28 Identities=32% Similarity=0.598 Sum_probs=24.4
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEe
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~ 86 (116)
..-.++++.+++..+.||..||.|.-|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4557899999999999999999998875
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.10 E-value=0.57 Score=35.48 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=29.6
Q ss_pred CCCCC-CCceeecCCCCcceEEee-cceEEEEeCCCCCeEEEE
Q 044375 56 TGALG-PESIAFDPNGDGPYTGVA-NGRILKWQGDELGWTEFA 96 (116)
Q Consensus 56 ~~~~G-PEsiAfD~~G~g~YTG~~-DGrIlR~~~~~~~w~~fA 96 (116)
....| |..+++|.+|+ +|.+.. .|+|+++++++.-...+.
T Consensus 180 ~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 180 PGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred CCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEEc
Confidence 34343 99999999997 998864 899999999865444333
No 5
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.25 E-value=0.49 Score=38.48 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCCCceeecCCCCcceEEeecc----------------eEEEEeCCCC--CeEEEEEcCC
Q 044375 57 GALGPESIAFDPNGDGPYTGVANG----------------RILKWQGDEL--GWTEFAVTTS 100 (116)
Q Consensus 57 ~~~GPEsiAfD~~G~g~YTG~~DG----------------rIlR~~~~~~--~w~~fA~Ts~ 100 (116)
.-.|.|++|+.++|+.+|+.+... ||++++.... .|..|+|.-.
T Consensus 145 ~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld 206 (326)
T PF13449_consen 145 NNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD 206 (326)
T ss_pred CCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCC
Confidence 346999999999998899987554 7888887643 3889988755
No 6
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.30 E-value=0.91 Score=37.31 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=34.8
Q ss_pred ceeecc-CCCCCCCceeecCCCCcceEEe------------ecc-eEEEEeCC---C--CCeEEEEEcC
Q 044375 50 SRIIQV-TGALGPESIAFDPNGDGPYTGV------------ANG-RILKWQGD---E--LGWTEFAVTT 99 (116)
Q Consensus 50 ae~l~~-~~~~GPEsiAfD~~G~g~YTG~------------~DG-rIlR~~~~---~--~~w~~fA~Ts 99 (116)
++++.. +.+.-|..|++|++|+ +|.+. ..| ||+++... + ..++.|+..-
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l 71 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL 71 (367)
T ss_pred EEEEECCCccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC
Confidence 344443 4688999999999998 99985 345 99999752 2 1367787543
No 7
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.60 E-value=0.72 Score=37.91 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCCceeecCCCCcceEEeec--------------------ceEEEEeCCCCCeEEEEEc
Q 044375 59 LGPESIAFDPNGDGPYTGVAN--------------------GRILKWQGDELGWTEFAVT 98 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~D--------------------GrIlR~~~~~~~w~~fA~T 98 (116)
.+|-.+++++||. +|.+..+ |+|+|+++++..++.+|.-
T Consensus 124 ~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G 182 (367)
T TIGR02604 124 HSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG 182 (367)
T ss_pred ccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC
Confidence 4588999999997 9986662 7899999998778877644
No 8
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=85.55 E-value=2.6 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.059 Sum_probs=25.7
Q ss_pred eccCCCCCCCceeecCCCCcce-EEeecceEEEEeCCC
Q 044375 53 IQVTGALGPESIAFDPNGDGPY-TGVANGRILKWQGDE 89 (116)
Q Consensus 53 l~~~~~~GPEsiAfD~~G~g~Y-TG~~DGrIlR~~~~~ 89 (116)
+...++.-|..+|+|+.++-+| +-..-+.|.+.+-++
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3445678999999999876677 445556666665444
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.20 E-value=5.3 Score=31.37 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=30.1
Q ss_pred cccccCceeeccCCCCCCCceeecCCCCcceEEe-ecceEEEEeCC
Q 044375 44 NNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGV-ANGRILKWQGD 88 (116)
Q Consensus 44 N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~~ 88 (116)
|.+|...+.+..+ -+|..++++++|+.+|.|. .++.|.-|+-+
T Consensus 22 ~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 22 EGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred CCceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 3455555555443 4799999999999899885 48888655443
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.11 E-value=3 Score=33.73 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=34.3
Q ss_pred cccccCceeeccCCCCCCCceeecCCCCcceEEee-cceEE--EEeCCCCCeEEEE
Q 044375 44 NNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVA-NGRIL--KWQGDELGWTEFA 96 (116)
Q Consensus 44 N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~-DGrIl--R~~~~~~~w~~fA 96 (116)
+.+|...+.+..++ ..|.+|++|++|+.+|.+.. ++.|. +++.+...++...
T Consensus 278 ~g~l~~~~~~~~~G-~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 278 TGTLTLVQTVPTGG-KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTEEEEEEEEESS-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCC-CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 34566666666643 57999999999999998874 45655 4455554455444
No 11
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=79.88 E-value=2.8 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=27.5
Q ss_pred CCCCceeecCCCCcceEEe-ecceEEEEeCCCCC
Q 044375 59 LGPESIAFDPNGDGPYTGV-ANGRILKWQGDELG 91 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~~~~~ 91 (116)
.+|.+++|+++|+.+|++. .||.|..|+.....
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 4799999999999899875 58999999986533
No 12
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.03 E-value=1.8 Score=32.77 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=12.8
Q ss_pred CCceeecC-CCCcceEEeecceEEEEeCCC
Q 044375 61 PESIAFDP-NGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 61 PEsiAfD~-~G~g~YTG~~DGrIlR~~~~~ 89 (116)
||..++|+ +|.-.++-...|+|+||++++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~ 31 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDT 31 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCC
Confidence 35555554 343222223455555555444
No 13
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=77.41 E-value=3.4 Score=19.60 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=18.8
Q ss_pred CCceeecCCCCcceEEeecceEEEE
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKW 85 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~ 85 (116)
--++.+.+.+.-+.+|..||.|.-|
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 3566777776678889999988665
No 14
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.94 E-value=2.5 Score=22.95 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=17.6
Q ss_pred CCCCceeecCCCCcceEEe-ecceEEE
Q 044375 59 LGPESIAFDPNGDGPYTGV-ANGRILK 84 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~-~DGrIlR 84 (116)
..|-++|+|++|+ +|..- ...||.+
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEE
Confidence 4789999999987 77664 3445543
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.45 E-value=5.1 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=26.2
Q ss_pred CCCCCceeecCCCCcceEEee-cceEEEEeCC
Q 044375 58 ALGPESIAFDPNGDGPYTGVA-NGRILKWQGD 88 (116)
Q Consensus 58 ~~GPEsiAfD~~G~g~YTG~~-DGrIlR~~~~ 88 (116)
..||.+++|+++|+.+|+... ++.|..|+-+
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 469999999999998999987 8888777653
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=74.36 E-value=2.6 Score=35.50 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=32.5
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCC-CeEEEEEcCCCcccc
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDEL-GWTEFAVTTSQRCGC 105 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~-~w~~fA~Ts~~r~~C 105 (116)
-++.|..+|+..|||..||-+.-|+-... -..+|.+.||-...|
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vv 131 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVV 131 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEE
Confidence 57789999999999999999999876442 245566666554433
No 17
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=72.97 E-value=6.3 Score=34.63 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.6
Q ss_pred CCCCceeecCCCCcceEEeecc
Q 044375 59 LGPESIAFDPNGDGPYTGVANG 80 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DG 80 (116)
+.=-.|+|++||. +|.++.|+
T Consensus 146 H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 146 HNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred cCCceEEECCCCc-EEEEECCC
Confidence 3345789999997 99988776
No 18
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=72.13 E-value=25 Score=28.22 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=18.3
Q ss_pred eeecCCCCcceEEeecceEEEEeCCC
Q 044375 64 IAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 64 iAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
.+++ +| .+|++..||.|..++...
T Consensus 61 p~v~-~~-~v~v~~~~g~v~a~d~~t 84 (377)
T TIGR03300 61 PAVA-GG-KVYAADADGTVVALDAET 84 (377)
T ss_pred eEEE-CC-EEEEECCCCeEEEEEccC
Confidence 3454 34 499999999999998643
No 19
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.51 E-value=8.5 Score=20.40 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCCcceEEeecceEEEEeCCC
Q 044375 69 NGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 69 ~G~g~YTG~~DGrIlR~~~~~ 89 (116)
+|. +|++..||.|+-++.+.
T Consensus 6 ~~~-v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 6 DGT-VYVGSTDGTLYALDAKT 25 (33)
T ss_pred CCE-EEEEcCCCEEEEEEccc
Confidence 455 99999999999999754
No 20
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.71 E-value=4.2 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.3
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
=+.|.||..|+.+|||..+|||+-+..+.
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~ 56 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREK 56 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeeccc
Confidence 36788999999999999999999997654
No 21
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.32 E-value=3.5 Score=33.68 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=20.1
Q ss_pred CCCceeecCCCCcceEEee-cceEEE
Q 044375 60 GPESIAFDPNGDGPYTGVA-NGRILK 84 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~-DGrIlR 84 (116)
-|-+|++++||. +|.... +|+|+|
T Consensus 307 r~~~v~~~pDG~-Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 307 RPRDVAQGPDGA-LYVSDDSDGKIYR 331 (331)
T ss_dssp -EEEEEEETTSE-EEEEE-TTTTEEE
T ss_pred CceEEEEcCCCe-EEEEECCCCeEeC
Confidence 378999999997 998876 999998
No 22
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.09 E-value=6 Score=32.30 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
.-|-+|+|.++|+ +|.+-..|+|+++..++
T Consensus 2 ~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g 31 (331)
T PF07995_consen 2 NNPRSMAFLPDGR-LLVAERSGRIWVVDKDG 31 (331)
T ss_dssp SSEEEEEEETTSC-EEEEETTTEEEEEETTT
T ss_pred CCceEEEEeCCCc-EEEEeCCceEEEEeCCC
Confidence 3578999999997 99999999999999554
No 23
>PRK13684 Ycf48-like protein; Provisional
Probab=67.54 E-value=39 Score=27.69 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEE
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFA 96 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA 96 (116)
.-.-+|+|..+.++.+.| ++|.|++=...+..|+...
T Consensus 46 ~~l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~~ 82 (334)
T PRK13684 46 ANLLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEERS 82 (334)
T ss_pred CceEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceECc
Confidence 456678998766655555 6899999776667798753
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=67.45 E-value=4.7 Score=28.02 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=23.8
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEe
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~ 86 (116)
....+++++++|..++++..||.|.-|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 3567899999988899999999988774
No 25
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=67.36 E-value=4.8 Score=32.40 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=17.3
Q ss_pred CCCCCceeecCCCCcceEEeecceEEEE
Q 044375 58 ALGPESIAFDPNGDGPYTGVANGRILKW 85 (116)
Q Consensus 58 ~~GPEsiAfD~~G~g~YTG~~DGrIlR~ 85 (116)
+..||-||||++|. +|-...-.+-+|+
T Consensus 221 ~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 221 IPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred cCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 34699999999997 9987766655554
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=66.87 E-value=5.2 Score=36.52 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=25.2
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCC
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
.+=-++++.++|.-+|+|..||+|..|+-.
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 344567888899999999999999999753
No 27
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.31 E-value=9.4 Score=31.55 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=31.5
Q ss_pred CceeeccCCCCCCCceeecCCCCcceEEeec-ceEEEEeCC
Q 044375 49 GSRIIQVTGALGPESIAFDPNGDGPYTGVAN-GRILKWQGD 88 (116)
Q Consensus 49 ~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~D-GrIlR~~~~ 88 (116)
..+++..+.+..|..|||++||+-+|..-.. +||.|+.-+
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 3444545558899999999999889988665 999998654
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=66.00 E-value=12 Score=27.39 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCCCceeecCCCCcceEEe-ecceEEEEeCCC
Q 044375 59 LGPESIAFDPNGDGPYTGV-ANGRILKWQGDE 89 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~~~ 89 (116)
.+|.+++|+++|+-+|++. .||+|..|+...
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 4789999999998787665 599999998754
No 29
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=64.99 E-value=11 Score=31.12 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCCceeecCCCCcce-EEeecc-eEEEEeCCCCCeEEEEEcCC
Q 044375 59 LGPESIAFDPNGDGPY-TGVANG-RILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~Y-TG~~DG-rIlR~~~~~~~w~~fA~Ts~ 100 (116)
-.|-.+++|.+|. +| .++.+| +|.+++++++ ..-.+.-|
T Consensus 213 G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~--l~~~i~lP 253 (307)
T COG3386 213 GLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGK--LLGEIKLP 253 (307)
T ss_pred CCCCceEEeCCCC-EEEecccCCceEEEECCCCc--EEEEEECC
Confidence 4799999999997 99 555555 9999999854 33344444
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.06 E-value=12 Score=35.56 Aligned_cols=34 Identities=29% Similarity=0.699 Sum_probs=27.2
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCCC--eEEEE
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDELG--WTEFA 96 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~~--w~~fA 96 (116)
-+++..+||+.+.||..||+|.-|+-. ++ +.+|.
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFt 389 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFT 389 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEec
Confidence 467899999999999999999999853 34 44443
No 31
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=61.29 E-value=4.8 Score=34.35 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=27.3
Q ss_pred CceeecCCCCcceEEeecceEEEEeCC-CCCeEEEEE
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGD-ELGWTEFAV 97 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~-~~~w~~fA~ 97 (116)
.+|+|.+-=+-+|||.+||-|..|++. ..+-.+|+-
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 578998863359999999999999984 344555543
No 32
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.20 E-value=8 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=16.9
Q ss_pred ceeecCCCCcceEEeecceEEEEeCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
+.+++ +|. +|.|..||+|+-++.+
T Consensus 16 ~~~v~-~g~-vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GGR-VYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EEC-TSE-EEEE-TTSEEEEEETT
T ss_pred CCEEE-CCE-EEEEcCCCEEEEEeCC
Confidence 44665 454 9999999999998854
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=60.15 E-value=13 Score=25.76 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=24.1
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-.++++.++|+.+++|..||.|.-|+...
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~ 40 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLET 40 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeC
Confidence 35678999988899999999999997654
No 34
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=59.72 E-value=6.8 Score=31.73 Aligned_cols=55 Identities=25% Similarity=0.324 Sum_probs=31.0
Q ss_pred ccCccccccCceeeccCCCCCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEE
Q 044375 40 IEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEF 95 (116)
Q Consensus 40 i~a~N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~f 95 (116)
....|+-++..+.|.-++..-=.+|.+|+.|- +|+-..||.+.|+.+....=.+|
T Consensus 62 ~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W 116 (229)
T PF14517_consen 62 SSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNW 116 (229)
T ss_dssp -STT--HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--H
T ss_pred ccCcccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcch
Confidence 34566666777888877444445999999996 99999999999987644333444
No 35
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=58.34 E-value=23 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=28.0
Q ss_pred CCCCCCCceeecCCCCcceEEee-cceEEEEeCCC
Q 044375 56 TGALGPESIAFDPNGDGPYTGVA-NGRILKWQGDE 89 (116)
Q Consensus 56 ~~~~GPEsiAfD~~G~g~YTG~~-DGrIlR~~~~~ 89 (116)
.++.-|-+|+|.+||+ +|..-. .|+|++++..+
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPET 60 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCC
Confidence 4578999999999997 888887 59999997654
No 36
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=57.50 E-value=23 Score=31.44 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=36.8
Q ss_pred eeeccCCCCCCCceeecCCCCcceEEee--------------------cceEEEEeCCCC-------CeEEEEEcCC
Q 044375 51 RIIQVTGALGPESIAFDPNGDGPYTGVA--------------------NGRILKWQGDEL-------GWTEFAVTTS 100 (116)
Q Consensus 51 e~l~~~~~~GPEsiAfD~~G~g~YTG~~--------------------DGrIlR~~~~~~-------~w~~fA~Ts~ 100 (116)
..++.-...-||++++++....+|..+. .|.|+||.+++. .|+.|....+
T Consensus 342 ~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~ 418 (524)
T PF05787_consen 342 DAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGD 418 (524)
T ss_pred ccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecC
Confidence 3344446679999999996445998753 367999998776 7888877654
No 37
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=57.17 E-value=6.9 Score=31.70 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred cCceeeccCCCCCCCceeecCCCCcceEEeecceEEEEe
Q 044375 48 EGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 48 ~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~ 86 (116)
+.++.|...+....+.+-+|++|. +|+=..|||+.|+.
T Consensus 119 ~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~dg~~~~~~ 156 (229)
T PF14517_consen 119 GSGKKIGGTGWNDFDAVFAGPNGV-LYAITPDGRLYRRY 156 (229)
T ss_dssp -HSEEEE-SSGGGEEEEEE-TTS--EEEEETTE-EEEE-
T ss_pred ccceecccCCCccceEEEeCCCcc-EEEEcCCCceEEeC
Confidence 367888888888899999999995 99999999999983
No 38
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=56.97 E-value=18 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.7
Q ss_pred ceeecCCCCcceEEe-------ecceEEEEeCCCC
Q 044375 63 SIAFDPNGDGPYTGV-------ANGRILKWQGDEL 90 (116)
Q Consensus 63 siAfD~~G~g~YTG~-------~DGrIlR~~~~~~ 90 (116)
++++.+||+-+.+|. .|..|+|+++++.
T Consensus 5 ~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred EEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 688899998555553 2666999988764
No 39
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=53.80 E-value=11 Score=22.02 Aligned_cols=21 Identities=48% Similarity=0.637 Sum_probs=15.2
Q ss_pred CCCCceeecCCCCcce-EEeecc
Q 044375 59 LGPESIAFDPNGDGPY-TGVANG 80 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~Y-TG~~DG 80 (116)
.=|-+||+|++|. +| ||..+|
T Consensus 13 ~~~~~IavD~~GN-iYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGN-IYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCC-EEEEEeecC
Confidence 3477899999998 55 555554
No 40
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.73 E-value=8.4 Score=37.45 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCC
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQ 101 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~ 101 (116)
.-||.+.|... |+||.++|-|.+-|..++--...|-|.-..
T Consensus 56 ~p~~nlv~tnh--gl~~~tsdrr~la~~~dgvvqqqfdyndqs 96 (1636)
T KOG3616|consen 56 KPKENLVFTNH--GLVTATSDRRALAWKEDGVVQQQFDYNDQS 96 (1636)
T ss_pred CCccceeeecc--ceEEEeccchhheeeccCcchhhccccchh
Confidence 57899999865 499999999999999887667777766444
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=53.48 E-value=24 Score=33.84 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCCCceeecCCCCcceEE-eecceEEEEeCCCCCeEEEEEc
Q 044375 59 LGPESIAFDPNGDGPYTG-VANGRILKWQGDELGWTEFAVT 98 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG-~~DGrIlR~~~~~~~w~~fA~T 98 (116)
..|..+++|++|. +|.+ ..+++|.+|+.++.....++-+
T Consensus 804 ~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 804 QHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred cCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 4699999999997 7765 5678999999876556666654
No 42
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=53.01 E-value=11 Score=32.82 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.6
Q ss_pred eecCCCCcceEEeecceEEEEeCCC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
.||+.|+.+|||++-|+|+-++-+.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecch
Confidence 5899999999999999999998654
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.53 E-value=16 Score=25.63 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.7
Q ss_pred CCchhhHHH
Q 044375 1 MNRNKKIVA 9 (116)
Q Consensus 1 ~~~~~~~~~ 9 (116)
|. ||.+|.
T Consensus 1 Ma-SK~~ll 8 (95)
T PF07172_consen 1 MA-SKAFLL 8 (95)
T ss_pred Cc-hhHHHH
Confidence 66 444333
No 44
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=51.71 E-value=25 Score=28.44 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=29.0
Q ss_pred ccCceeeccCCCCCCCceeecCCCCcceEEee-cceEEEEeCC
Q 044375 47 LEGSRIIQVTGALGPESIAFDPNGDGPYTGVA-NGRILKWQGD 88 (116)
Q Consensus 47 L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~-DGrIlR~~~~ 88 (116)
|.....+.++...||.+++|+++|+..|.... ++.|..++-+
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 55545556677789999999999988988754 4555555443
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=50.30 E-value=17 Score=32.87 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.0
Q ss_pred CceeecCCCCcceEEeecceEEEEeC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
-+++|+++|..+.||..||.|.-|+-
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~ 512 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFEC 512 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 35799999998999999999999974
No 46
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.85 E-value=15 Score=31.79 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=27.7
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~ 100 (116)
-++.||.-|+..-|+.+|++|.-|+-.. .-.+|.-|+.
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~-~s~~W~~Ts~ 54 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTS-DSGTWSCTSS 54 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccC-CCCceEEeee
Confidence 4678999999999999999999998321 2234444443
No 47
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=48.08 E-value=17 Score=31.60 Aligned_cols=37 Identities=30% Similarity=0.698 Sum_probs=31.7
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEE
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFA 96 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA 96 (116)
+|-..+-|.+-.. ||+...||-|++|.|....-.+|-
T Consensus 218 HgnDGLIFTp~~~-PY~~Gkd~~lLKWKP~~~NTiDF~ 254 (404)
T COG5226 218 HGNDGLIFTPADE-PYSVGKDGALLKWKPASLNTIDFR 254 (404)
T ss_pred CCCCceEeccCCC-CcccCccceeeecCccccCceeee
Confidence 5777888999875 999999999999999877777774
No 48
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.11 E-value=27 Score=30.61 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=27.5
Q ss_pred CCC-ceeecCCCCcceEEeecceEEEEeC--CCCCeEEE
Q 044375 60 GPE-SIAFDPNGDGPYTGVANGRILKWQG--DELGWTEF 95 (116)
Q Consensus 60 GPE-siAfD~~G~g~YTG~~DGrIlR~~~--~~~~w~~f 95 (116)
||= .+||+++|.-+-|+..-|+|+|+-- ++....+|
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 553 4699999999999999999999843 44445554
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.34 E-value=35 Score=29.95 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=27.3
Q ss_pred eecCCCCcceEEeecceEEEEeCCCCCeEEEEEcC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTT 99 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts 99 (116)
-|-++|+.+.||..||-|+.|++.. +...|..++
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~ 230 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQ 230 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCC-CceeEEecc
Confidence 4778899999999999999999765 456666653
No 50
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=44.20 E-value=32 Score=31.77 Aligned_cols=53 Identities=25% Similarity=0.413 Sum_probs=37.7
Q ss_pred ceeeccCCCCCCCceeecCCCCcceEEeec-----------------ceEEEEeCCCC-------CeEEEEEcCCCc
Q 044375 50 SRIIQVTGALGPESIAFDPNGDGPYTGVAN-----------------GRILKWQGDEL-------GWTEFAVTTSQR 102 (116)
Q Consensus 50 ae~l~~~~~~GPEsiAfD~~G~g~YTG~~D-----------------GrIlR~~~~~~-------~w~~fA~Ts~~r 102 (116)
+..++-....-||.|++.+.-.-.|..+-+ |.|+||.+.+. .|+.|+..+...
T Consensus 408 A~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~ 484 (616)
T COG3211 408 ADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPS 484 (616)
T ss_pred HHHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcc
Confidence 444555566789999999853237877655 45999998776 688888765443
No 51
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=44.16 E-value=52 Score=31.61 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCCCCceeecCCCCcceEEee-cceEEEEeCCCCCe
Q 044375 58 ALGPESIAFDPNGDGPYTGVA-NGRILKWQGDELGW 92 (116)
Q Consensus 58 ~~GPEsiAfD~~G~g~YTG~~-DGrIlR~~~~~~~w 92 (116)
..+|..|+++++|+.+|.... +++|.+|+.+..+.
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 457999999999876886654 58999998765443
No 52
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=44.11 E-value=13 Score=32.35 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=26.6
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~ 100 (116)
|+-||..+..+|||..||++.-|.-++..=.+|.-+++
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~es 358 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWTES 358 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEecCCccccccccccc
Confidence 55678888889999999999999833323344444433
No 53
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.93 E-value=17 Score=32.60 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeC
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
.-+-++++|+.++..|.|++||.|+...-
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeeh
Confidence 36788899999999999999999998643
No 54
>PTZ00421 coronin; Provisional
Probab=43.57 E-value=30 Score=30.31 Aligned_cols=28 Identities=29% Similarity=0.610 Sum_probs=23.6
Q ss_pred CceeecC-CCCcceEEeecceEEEEeCCC
Q 044375 62 ESIAFDP-NGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 62 EsiAfD~-~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-+++|++ ++..++||..||.|.-|+-..
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4789998 777799999999999998643
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=42.70 E-value=20 Score=31.67 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=32.8
Q ss_pred ceeeccCCCCCCCceeecCCCCcceEEeecceEEEEeC
Q 044375 50 SRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 50 ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
++.|..++-.-||.-.|.|||+.+.+|..||-|--|+-
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny 242 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNY 242 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccceeeeehh
Confidence 44566677788999999999999999999999988865
No 56
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=42.26 E-value=27 Score=21.04 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCcceEEeecceEEEEeCCCC
Q 044375 70 GDGPYTGVANGRILKWQGDEL 90 (116)
Q Consensus 70 G~g~YTG~~DGrIlR~~~~~~ 90 (116)
|=++...+.||+|+++.++..
T Consensus 14 gC~i~~~v~~g~i~~v~g~~~ 34 (55)
T PF04879_consen 14 GCGIDVYVKDGKIVKVEGDPD 34 (55)
T ss_dssp --EEEEEEETTEEEEEEE-TT
T ss_pred CCcEEEEEecCceEEEECCCC
Confidence 335788899999999988653
No 57
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.85 E-value=27 Score=32.83 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=22.0
Q ss_pred eeecCCCCcceEEeecceEEEEeCCCCCeE
Q 044375 64 IAFDPNGDGPYTGVANGRILKWQGDELGWT 93 (116)
Q Consensus 64 iAfD~~G~g~YTG~~DGrIlR~~~~~~~w~ 93 (116)
..+=++|+ +|+|.+||+|.-|.-+..+|.
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 34455787 999999999999887655553
No 58
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.89 E-value=52 Score=29.71 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=43.8
Q ss_pred cccCceeeccCCCCCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCC
Q 044375 46 NLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQ 101 (116)
Q Consensus 46 ~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~ 101 (116)
+|...+.+.+..-+|-.++.||..|..+-.+..|=+|+.+......|.....+..+
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 45556667777667888999999998888888999999998877789876555433
No 59
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=39.66 E-value=39 Score=27.48 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=23.7
Q ss_pred CCCceeecCCCCcceEEeecc-------eEEEEeCCCC
Q 044375 60 GPESIAFDPNGDGPYTGVANG-------RILKWQGDEL 90 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DG-------rIlR~~~~~~ 90 (116)
=||+|+++++|. +|.+..-+ +|++++.++.
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~ 122 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGR 122 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCc
Confidence 689999977775 88877666 8999987743
No 60
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=39.47 E-value=36 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCCCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDELG 91 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~ 91 (116)
+-+++|.+||+.+|+...||.|-.|+.....
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence 4567899999999999999999999876543
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.05 E-value=31 Score=30.74 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.7
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELG 91 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~ 91 (116)
-+.|.|+|...-+|..||+|+-|+-.++.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCce
Confidence 35799999999999999999999876543
No 62
>PTZ00421 coronin; Provisional
Probab=38.97 E-value=36 Score=29.79 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=25.3
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-.+++|.++|.-++||..||.|.-|+...
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence 46789999998899999999999998754
No 63
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.99 E-value=29 Score=32.55 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=31.3
Q ss_pred eeeccCCCCCC-CceeecCCCCcceEEeecceEEEEeCCC
Q 044375 51 RIIQVTGALGP-ESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 51 e~l~~~~~~GP-EsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-+|+.|- .|| ++++|.++|+.+-+|..||+|+-|+-..
T Consensus 570 VRiF~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 570 VRIFTGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred EEEecCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 4466663 566 7889999999999999999999998755
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=37.00 E-value=30 Score=31.23 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=23.4
Q ss_pred CCceeecCCCCcceEEeecceEEEEe
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~ 86 (116)
+=.+.|.+||+.+.+|-+||++.-|+
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEee
Confidence 45678999999999999999999996
No 65
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=36.39 E-value=32 Score=29.66 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=35.0
Q ss_pred CccccccCceeeccCCCCCCCceeecCCCCcceEEe-ecceEEEEeC
Q 044375 42 GSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGV-ANGRILKWQG 87 (116)
Q Consensus 42 a~N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~ 87 (116)
....+|..++...+....||..|+|.++|+..|.-. .+++|.-|.-
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 346778777777776678999999999999888765 3666666544
No 66
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.35 E-value=1.7e+02 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=24.3
Q ss_pred Cceee--cCCCCcceEEeecceEEEEeCCCCCeEEEE
Q 044375 62 ESIAF--DPNGDGPYTGVANGRILKWQGDELGWTEFA 96 (116)
Q Consensus 62 EsiAf--D~~G~g~YTG~~DGrIlR~~~~~~~w~~fA 96 (116)
=+|+| +...+ -++-.++|.|++-.-.+..|+...
T Consensus 91 ~~V~F~~~d~~~-GwAVG~~G~IL~T~DGG~tW~~~~ 126 (398)
T PLN00033 91 LDIAFVPDDPTH-GFLLGTRQTLLETKDGGKTWVPRS 126 (398)
T ss_pred EEEEeccCCCCE-EEEEcCCCEEEEEcCCCCCceECc
Confidence 56788 33334 566666999999876777899854
No 67
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=1.1e+02 Score=25.40 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=28.9
Q ss_pred CCCceeecCCCCcceEEee---cceEEEEeCCCCCeEE
Q 044375 60 GPESIAFDPNGDGPYTGVA---NGRILKWQGDELGWTE 94 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~---DGrIlR~~~~~~~w~~ 94 (116)
.|..+++|++|+-+|.+-. +++|..++.....-..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 9999999999988999988 6899998876544333
No 68
>PRK15396 murein lipoprotein; Provisional
Probab=35.25 E-value=40 Score=23.06 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=9.4
Q ss_pred CCchhhHHHHHH
Q 044375 1 MNRNKKIVASAA 12 (116)
Q Consensus 1 ~~~~~~~~~~a~ 12 (116)
||+.++++++++
T Consensus 1 m~~~kl~l~av~ 12 (78)
T PRK15396 1 MNRTKLVLGAVI 12 (78)
T ss_pred CchhHHHHHHHH
Confidence 888888887666
No 69
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=34.81 E-value=65 Score=26.31 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.5
Q ss_pred eecCCCCcceEEeecceEEEEeCC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
.+|+-|=++...+.||+|+|+.++
T Consensus 5 ~~~~~GC~i~v~~~~g~i~ri~~~ 28 (375)
T cd02773 5 VLDAVGSNIRVDTRGGEVMRILPR 28 (375)
T ss_pred CCCCCCCceEEEEeCCEEEEEeCC
Confidence 457778889999999999999875
No 70
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=34.65 E-value=69 Score=27.67 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=36.8
Q ss_pred ceeeccCCCCCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEE
Q 044375 50 SRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEF 95 (116)
Q Consensus 50 ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~f 95 (116)
.++...++..||--|...++|..=|+...+--|.|+++-...-+.+
T Consensus 180 i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~ 225 (353)
T COG4257 180 ISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV 225 (353)
T ss_pred eeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCccee
Confidence 4555667888999999999999889999999999998754333443
No 71
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.52 E-value=63 Score=25.20 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=32.2
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCCCeEE-----EEEcCCCcc
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDELGWTE-----FAVTTSQRC 103 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~-----fA~Ts~~r~ 103 (116)
-++.++.+|. |+...++|..+.|+.+=..|.. |+..|.+++
T Consensus 70 ~~~~lt~~G~-PiV~lsng~~y~y~~~L~~W~~vsd~w~~~~S~~~~ 115 (219)
T PF07569_consen 70 TSCSLTSNGV-PIVTLSNGDSYSYSPDLGCWIRVSDSWWAIGSQYWD 115 (219)
T ss_pred EEEEEcCCCC-EEEEEeCCCEEEeccccceeEEeccchhhhhccccc
Confidence 3567788886 9999999999999988778988 444455554
No 72
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=33.20 E-value=37 Score=31.78 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=24.9
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCCeEEE
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELGWTEF 95 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~f 95 (116)
++.++++|.-+.+|+.||+|.-|+... +-+.+
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~ 190 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLH 190 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCC-CceEE
Confidence 667888886689999999999998653 34544
No 73
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.81 E-value=1.1e+02 Score=24.34 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=11.6
Q ss_pred CCCCceeecCCCCcceEEeec
Q 044375 59 LGPESIAFDPNGDGPYTGVAN 79 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~D 79 (116)
.|=+.++||++|.-=|.-+++
T Consensus 45 e~~~~~~~de~G~~~y~l~a~ 65 (188)
T COG3117 45 EGLDTTVYDEQGKLKYRLTAQ 65 (188)
T ss_pred cCcceeEECCCcceeEEeehh
Confidence 455666666666544544443
No 74
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.77 E-value=44 Score=29.41 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=20.6
Q ss_pred ceeecCCCCcceEEeec--ceEEEEeCCCCC
Q 044375 63 SIAFDPNGDGPYTGVAN--GRILKWQGDELG 91 (116)
Q Consensus 63 siAfD~~G~g~YTG~~D--GrIlR~~~~~~~ 91 (116)
++.||..| .|.|+.| |||+-+......
T Consensus 31 aVefd~tg--~YlatGDkgGRVvlfer~~s~ 59 (460)
T COG5170 31 AVEFDETG--LYLATGDKGGRVVLFEREKSY 59 (460)
T ss_pred EEEecccc--ceEeecCCCceEEEeeccccc
Confidence 56788775 7888888 999999765443
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=32.44 E-value=26 Score=29.82 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred ceeecCCCCcceEEeecceEEEEeC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
-|.|||+|+.+-||.+|--+=-|+.
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred EEEECCCCceEeeccccceeeccCh
Confidence 3689999999999999887665543
No 76
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=32.27 E-value=35 Score=24.67 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=11.6
Q ss_pred CceeeccCCCCCCCceeecCCC
Q 044375 49 GSRIIQVTGALGPESIAFDPNG 70 (116)
Q Consensus 49 ~ae~l~~~~~~GPEsiAfD~~G 70 (116)
..+.+.+++..=|.|+..|+++
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~ 70 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDG 70 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTS
T ss_pred CCceEEEeeEEccCCEEEcCCC
Confidence 3444555544456677776544
No 77
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.06 E-value=48 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=29.2
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQ 101 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~ 101 (116)
-|||+|++|+...|...|-++.-|+-..-. +-.++-+|+
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~tp~ 335 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRTPH 335 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeecccc-ccceeecCC
Confidence 578999999999999999999999865422 334444443
No 78
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=32.00 E-value=44 Score=29.24 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.8
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCCCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDELG 91 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~ 91 (116)
.|.+.|.+-|..+-.|+.||||+-|+-...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc
Confidence 7888999999989999999999999865433
No 79
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=31.58 E-value=49 Score=28.82 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCceeecCCCCcceEEee-cceEEEEeCCC
Q 044375 60 GPESIAFDPNGDGPYTGVA-NGRILKWQGDE 89 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~-DGrIlR~~~~~ 89 (116)
=|-++++++||-.+.+--. ||+|+|+...+
T Consensus 368 R~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 368 RPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred cccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 5899999999974444444 88999998653
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=1.1e+02 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.6
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCC
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~ 100 (116)
|=+-.|.|||+-+..|..||+|.-|+.+. +-+..+...+
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~ 273 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLET-GKKVAVLRGP 273 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCC-CcEeeEecCC
Confidence 45778999999999999999999999754 4444444444
No 81
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.67 E-value=53 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=25.0
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDEL 90 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~ 90 (116)
-+++|.++|.-+.++..||.|.-|+....
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 34799999999999999999999997653
No 82
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.67 E-value=37 Score=26.64 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.0
Q ss_pred CcceEEeecceEEEEeCC
Q 044375 71 DGPYTGVANGRILKWQGD 88 (116)
Q Consensus 71 ~g~YTG~~DGrIlR~~~~ 88 (116)
.|-|-|-.||||.|++.+
T Consensus 125 vG~YlGqN~GrV~rI~d~ 142 (170)
T COG3168 125 VGQYLGQNYGRVVRITDD 142 (170)
T ss_pred eccEeeccCceEEEecCC
Confidence 357999999999999754
No 83
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=30.53 E-value=1e+02 Score=17.16 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=20.0
Q ss_pred ceEEeecceEEEEeCCCCCeEEEEEcCC
Q 044375 73 PYTGVANGRILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 73 ~YTG~~DGrIlR~~~~~~~w~~fA~Ts~ 100 (116)
+|.++.||.|+-++.+. +=..|.+-..
T Consensus 3 v~~~~~~g~l~AlD~~T-G~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKT-GKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTT-TSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCC-CCEEEeeeCC
Confidence 89999999999999765 3344555433
No 84
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.50 E-value=76 Score=24.08 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=21.8
Q ss_pred ecCCCCcceEEeecceEEEEeC-CCCCeEEEEEc
Q 044375 66 FDPNGDGPYTGVANGRILKWQG-DELGWTEFAVT 98 (116)
Q Consensus 66 fD~~G~g~YTG~~DGrIlR~~~-~~~~w~~fA~T 98 (116)
.+..|+.+|.|+.|| |+-++. +...|......
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~ 35 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL 35 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEeec
Confidence 345567799999999 777776 44456654444
No 85
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.36 E-value=56 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCCCCCceeecCCCCcceEEeecceEEEEeCC
Q 044375 57 GALGPESIAFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 57 ~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
.+.+||-||.|.+|. +|-...-+.-.|+.++
T Consensus 282 dipqaEGiamDd~g~-lYIvSEPnlfy~F~~~ 312 (316)
T COG3204 282 DIPQAEGIAMDDDGN-LYIVSEPNLFYRFTPQ 312 (316)
T ss_pred cCCCcceeEECCCCC-EEEEecCCcceecccC
Confidence 567999999999996 9988887777776654
No 86
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=29.09 E-value=62 Score=24.48 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCCceeecCCCCcceEEeecceEE-EEeCCCCCeEEEEE
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRIL-KWQGDELGWTEFAV 97 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIl-R~~~~~~~w~~fA~ 97 (116)
.|=|=+.|+|+|...-+++..|..+ -++..+..|.+|-.
T Consensus 103 RG~e~~~f~p~~~~~~~~~esG~~f~~vdL~e~eW~dYDe 142 (161)
T PF05907_consen 103 RGLEPVEFSPRGGWVAVSVESGTKFEDVDLSEGEWYDYDE 142 (161)
T ss_dssp ESEEEEEE---S-EEEEET-TS-EEEEE--TTS-EEEEET
T ss_pred CCcEeEEEecCCcEEEEEecCCCEEEeccCCCCceeeecc
Confidence 4778888999886566666679999 78877778998753
No 87
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=28.95 E-value=50 Score=29.51 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=23.7
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
.++..|||.-+-+|+.||.|.-|++..
T Consensus 162 cvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 162 CVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred EEEECCCcchhhccccCCeEEEecCCC
Confidence 567889999999999999999999643
No 88
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=28.90 E-value=49 Score=31.50 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.1
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELG 91 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~ 91 (116)
+++|-.+|..+|+|...|-.++|..+...
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCC
Confidence 67899999999999999999999875443
No 89
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.85 E-value=44 Score=31.67 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=19.2
Q ss_pred eeecCCCCcceEEeecceEEEEeCC
Q 044375 64 IAFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 64 iAfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
++..+.+.-.|||..||||.+|...
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EeecCccceeEecCCCeEEEEeecC
Confidence 4555555568999999999999743
No 90
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.71 E-value=55 Score=27.82 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=31.4
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCCcc--cccC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQRC--GCLL 107 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~r~--~C~~ 107 (116)
|-+|..||+.+.||.+|+-..-|+.... ++-+.-..+.+ .|+.
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~--k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAG--KEVRQYQGHHKAAVCVA 307 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccC--ceeeecCCcccccEEEE
Confidence 5589999999999999998888887643 34455555655 4654
No 91
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.48 E-value=30 Score=27.48 Aligned_cols=40 Identities=25% Similarity=0.583 Sum_probs=23.5
Q ss_pred CCCccccCccccccCceeeccCCCCCCCceeecCCCCcceEEeecceEEE
Q 044375 35 FCAPCIEGSNNNLEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILK 84 (116)
Q Consensus 35 f~~~~i~a~N~~L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR 84 (116)
.+-+|+.+.-.+++++--+ +. | .+.|.-+=-|+.||||+-
T Consensus 49 ~cvPYVpAtteQv~nVLSl-l~---~------n~~GklvDlGSGDGRiVl 88 (199)
T KOG4058|consen 49 LCVPYVPATTEQVENVLSL-LR---G------NPKGKLVDLGSGDGRIVL 88 (199)
T ss_pred ecccccCccHHHHHHHHHH-cc---C------CCCCcEEeccCCCceeeh
Confidence 4456667766666665211 11 1 334555566788999985
No 92
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=28.47 E-value=46 Score=29.77 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=24.9
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDEL 90 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~~ 90 (116)
=+++|+|+|.-+.||.+|+-+.-|+...+
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 47899999998999999998888877653
No 93
>PTZ00420 coronin; Provisional
Probab=28.23 E-value=75 Score=28.70 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=25.2
Q ss_pred CCCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 60 GPESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
...+++|+++|.-+.++..||.|.-|+...
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 457889999999788888899999998754
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=27.56 E-value=50 Score=29.68 Aligned_cols=23 Identities=30% Similarity=0.692 Sum_probs=20.2
Q ss_pred eeecCCCCcceEEeecceEEEEe
Q 044375 64 IAFDPNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 64 iAfD~~G~g~YTG~~DGrIlR~~ 86 (116)
+.|..||..++||..||+|+-|.
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEE
Confidence 35778898999999999999985
No 95
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.06 E-value=1.3e+02 Score=24.35 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=27.6
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCC----CCeEEEEEcCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDE----LGWTEFAVTTS 100 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~----~~w~~fA~Ts~ 100 (116)
-.+++|++|.--|+-+....|.+|++++ ......+....
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~ 231 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPR 231 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCc
Confidence 4579999997344668889999999876 34666554443
No 96
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.02 E-value=1.1e+02 Score=25.94 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCCCCCceeecCCCCcceEEe-ecceEEEEeCC-CCCeEEEEEcCCCcccc
Q 044375 57 GALGPESIAFDPNGDGPYTGV-ANGRILKWQGD-ELGWTEFAVTTSQRCGC 105 (116)
Q Consensus 57 ~~~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~~-~~~w~~fA~Ts~~r~~C 105 (116)
...=|.-+++|.+|. +|..+ ..|+|.|+++. +..-.+|..-++.-..|
T Consensus 210 e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 210 ESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred CCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 345688899999997 77665 66799999985 44567776665554433
No 97
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=26.80 E-value=1.5e+02 Score=25.46 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=36.1
Q ss_pred CCceeecCCCCcceEEeecceEEEEeCCCC-CeE----------EEEEcCCCcccccCccc
Q 044375 61 PESIAFDPNGDGPYTGVANGRILKWQGDEL-GWT----------EFAVTTSQRCGCLLLAR 110 (116)
Q Consensus 61 PEsiAfD~~G~g~YTG~~DGrIlR~~~~~~-~w~----------~fA~Ts~~r~~C~~~~~ 110 (116)
=+++++.+||....+|..||.+..|+.+.. .-. --|..+.+|..|.++.|
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc
Confidence 456788899998999999999999987552 222 23455666777877755
No 98
>PRK13684 Ycf48-like protein; Provisional
Probab=26.30 E-value=91 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.9
Q ss_pred CCCceeecCCCCcceEEeecceEEEEeCCCCCeEEE
Q 044375 60 GPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEF 95 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~f 95 (116)
+.-++++.++|. +|....+|-|++-...+..|+..
T Consensus 261 ~l~~v~~~~~~~-~~~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 261 GYLDLAYRTPGE-IWAGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred ceeeEEEcCCCC-EEEEcCCCeEEEeCCCCCCCeEC
Confidence 445678888886 89999999999876667788874
No 99
>smart00284 OLF Olfactomedin-like domains.
Probab=26.17 E-value=89 Score=25.63 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=24.7
Q ss_pred ceeecCCC-CcceEEeec-ceEE--EEeCCCCCeEEEEEcC
Q 044375 63 SIAFDPNG-DGPYTGVAN-GRIL--KWQGDELGWTEFAVTT 99 (116)
Q Consensus 63 siAfD~~G-~g~YTG~~D-GrIl--R~~~~~~~w~~fA~Ts 99 (116)
|+|+|..| -.+|+...+ |.|+ |+++.....+.-=+|+
T Consensus 132 DlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~ 172 (255)
T smart00284 132 DLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT 172 (255)
T ss_pred EEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC
Confidence 56889988 346777544 9898 8888766554433443
No 100
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=26.14 E-value=99 Score=26.72 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=41.6
Q ss_pred ccCceeeccCCCCCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEE
Q 044375 47 LEGSRIIQVTGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAV 97 (116)
Q Consensus 47 L~~ae~l~~~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~ 97 (116)
+.+....++....+|-++|.++||..=||+-..|-|=+.++....-+.+.-
T Consensus 50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL 100 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL 100 (353)
T ss_pred CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEec
Confidence 445566777777899999999999889999999999999887666776654
No 101
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.82 E-value=1e+02 Score=27.15 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=30.4
Q ss_pred CCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCCc
Q 044375 60 GPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQR 102 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~r 102 (116)
|=-++-++++ ..+||+++||.|..|+... +...|.||.-+-
T Consensus 329 ~V~~l~w~~t-~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~ 369 (399)
T KOG0296|consen 329 GVTKLKWLNT-DYLLTACANGKVRQWDART-GQLKFTYTGHQM 369 (399)
T ss_pred ceEEEEEcCc-chheeeccCceEEeeeccc-cceEEEEecCch
Confidence 4456677774 4699999999999998543 567777776554
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=25.63 E-value=58 Score=31.51 Aligned_cols=28 Identities=36% Similarity=0.639 Sum_probs=25.4
Q ss_pred CCCceeecCCCCcceEEeecceEEEEeC
Q 044375 60 GPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
|=-.|++|++|+.+||..+||-|.+|+.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~ 42 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKT 42 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeec
Confidence 5567899999999999999999999976
No 103
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.51 E-value=1.2e+02 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCCCCCCceeecCCCCcceEEeecceEEEEeC
Q 044375 56 TGALGPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 56 ~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
....|=-|++|...|+-+|+|..|..+.-|+-
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 35678899999999999999999999999975
No 104
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=25.50 E-value=57 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=27.8
Q ss_pred eecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCCcccccC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQRCGCLL 107 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~r~~C~~ 107 (116)
..|+.|+-+-+|..||-|-+|+..+- -++....++-+.|++
T Consensus 304 Dld~~~~~LasG~tdG~V~vwdlk~~--gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 304 DLDPKGEILASGDTDGSVRVWDLKDL--GNEVSVTGNYSDTVN 344 (406)
T ss_pred ecCCCCceeeccCCCccEEEEecCCC--CCccccccccccccc
Confidence 45678998889999999999997652 233344444444544
No 105
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=25.50 E-value=68 Score=22.11 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=27.5
Q ss_pred eccCCCCCCCceeecCCCC-cceEEeecceEEEEeCC
Q 044375 53 IQVTGALGPESIAFDPNGD-GPYTGVANGRILKWQGD 88 (116)
Q Consensus 53 l~~~~~~GPEsiAfD~~G~-g~YTG~~DGrIlR~~~~ 88 (116)
+-+.++.-|..||+.+||. .+++=+.-.||+|+.-.
T Consensus 51 vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 51 VLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred EehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 3345688999999999987 56666888999998654
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=25.27 E-value=73 Score=28.81 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=23.7
Q ss_pred CceeecCCCCcceEEeecceEEEEeCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
..++|+++|..+.+|..||.|.-|+..
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 468899999889999999999999864
No 107
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.16 E-value=66 Score=16.68 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=10.2
Q ss_pred ceeecCCCCcceEEee
Q 044375 63 SIAFDPNGDGPYTGVA 78 (116)
Q Consensus 63 siAfD~~G~g~YTG~~ 78 (116)
+|..|++|+ +..|+.
T Consensus 9 ~i~~D~~G~-lWigT~ 23 (24)
T PF07494_consen 9 SIYEDSDGN-LWIGTY 23 (24)
T ss_dssp EEEE-TTSC-EEEEET
T ss_pred EEEEcCCcC-EEEEeC
Confidence 567788886 777764
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=24.99 E-value=41 Score=29.30 Aligned_cols=18 Identities=33% Similarity=0.293 Sum_probs=15.4
Q ss_pred CcceEEeecceEEEEeCC
Q 044375 71 DGPYTGVANGRILKWQGD 88 (116)
Q Consensus 71 ~g~YTG~~DGrIlR~~~~ 88 (116)
-.+|||.+||+|.-|+-.
T Consensus 202 ~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIR 219 (397)
T ss_pred eEEEecCCCceEEEEEee
Confidence 469999999999999753
No 109
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=24.98 E-value=1.2e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCCCCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCCCc
Q 044375 56 TGALGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTSQR 102 (116)
Q Consensus 56 ~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~~r 102 (116)
+-.+-|+.+|+.++|.-.-.|..||.|--+...+..-++++..-++|
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 44578999999999988999999999776665554556676666665
No 110
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=24.34 E-value=47 Score=30.53 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=25.2
Q ss_pred CCCceeecCCCCcceEEeecceEEEEeCCC
Q 044375 60 GPESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 60 GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
+=-++|+|+.|-.+-+|.+||+|.-|.-+.
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccc
Confidence 445789999998888999999999998654
No 111
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.20 E-value=1.2e+02 Score=29.01 Aligned_cols=39 Identities=33% Similarity=0.558 Sum_probs=29.9
Q ss_pred CCCCce-eecCCCCcceEEeecceEEEEeCCCCCeEEEEEc
Q 044375 59 LGPESI-AFDPNGDGPYTGVANGRILKWQGDELGWTEFAVT 98 (116)
Q Consensus 59 ~GPEsi-AfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~T 98 (116)
.||--. +||+.|.-+-||..||+|.-|+-.+ +..++..-
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-~~~th~fk 144 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKN-GYCTHSFK 144 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEeeC-CEEEEEec
Confidence 577654 9999998889999999999998765 35554443
No 112
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.10 E-value=1.3e+02 Score=25.62 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCCCceeecCCCC-cceEEe-ecceEEEEeCCC
Q 044375 59 LGPESIAFDPNGD-GPYTGV-ANGRILKWQGDE 89 (116)
Q Consensus 59 ~GPEsiAfD~~G~-g~YTG~-~DGrIlR~~~~~ 89 (116)
.+|++|+|.+||+ -+|+.. .+|.|--++...
T Consensus 299 ~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 299 HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 5999999999998 788776 567677776543
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=22.64 E-value=1e+02 Score=28.49 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=24.5
Q ss_pred ceeecCCCCcceEEeecceEEEEeCCCCC
Q 044375 63 SIAFDPNGDGPYTGVANGRILKWQGDELG 91 (116)
Q Consensus 63 siAfD~~G~g~YTG~~DGrIlR~~~~~~~ 91 (116)
+++|.++|. ..||-++|-|+-|...+..
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 678999997 9999999999999986544
No 114
>PRK02888 nitrous-oxide reductase; Validated
Probab=22.49 E-value=1e+02 Score=28.69 Aligned_cols=31 Identities=39% Similarity=0.785 Sum_probs=26.5
Q ss_pred CCCCCceeecCCCCcceEEe-ecceEEEEeCCC
Q 044375 58 ALGPESIAFDPNGDGPYTGV-ANGRILKWQGDE 89 (116)
Q Consensus 58 ~~GPEsiAfD~~G~g~YTG~-~DGrIlR~~~~~ 89 (116)
..||=..+||.+|. .||.+ .|-.|+||+-+.
T Consensus 374 GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 46999999999997 99985 699999998543
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.45 E-value=90 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.5
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-+++|.+||+.+.|...|+-|.-|+-++
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVRD 117 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecch
Confidence 3689999999899999999888887543
No 116
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=22.17 E-value=54 Score=19.08 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=14.2
Q ss_pred ceeeccCCCCCCCceeecC
Q 044375 50 SRIIQVTGALGPESIAFDP 68 (116)
Q Consensus 50 ae~l~~~~~~GPEsiAfD~ 68 (116)
.+.+....+.=|++||+|+
T Consensus 24 ~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 24 RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEESSTSSEEEEEEET
T ss_pred eEEEEECCCCCcCEEEECC
Confidence 3445556789999999984
No 117
>PTZ00420 coronin; Provisional
Probab=22.14 E-value=1.1e+02 Score=27.54 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCCceeecCC-CCcceEEeecceEEEEeCC
Q 044375 60 GPESIAFDPN-GDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 60 GPEsiAfD~~-G~g~YTG~~DGrIlR~~~~ 88 (116)
.--+++|.++ +..++||..||.|.-|+-.
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~ 105 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIP 105 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Confidence 4467899886 6679999999999999864
No 118
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.99 E-value=1.3e+02 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCCceeecCCCCcceEEeecceEEEEeCCCCCeEEE
Q 044375 59 LGPESIAFDPNGDGPYTGVANGRILKWQGDELGWTEF 95 (116)
Q Consensus 59 ~GPEsiAfD~~G~g~YTG~~DGrIlR~~~~~~~w~~f 95 (116)
+|==|+|++++++ ++++...|-+++-.-.+..|+.-
T Consensus 233 ~~~ld~a~~~~~~-~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 233 YGILDLAYRPPNE-IWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp S-EEEEEESSSS--EEEEESTT-EEEESSTTSS-EE-
T ss_pred eeeEEEEecCCCC-EEEEeCCccEEEeCCCCccceEC
Confidence 4445779998886 99999999999977677789863
No 119
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.78 E-value=56 Score=30.76 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=0.0
Q ss_pred CCCCcceEEeecceEEEEe
Q 044375 68 PNGDGPYTGVANGRILKWQ 86 (116)
Q Consensus 68 ~~G~g~YTG~~DGrIlR~~ 86 (116)
+.|+.+|||..||-|.+|.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~ 53 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWS 53 (735)
T ss_pred CCCceEEecCCCceEEEec
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.55 E-value=86 Score=28.43 Aligned_cols=28 Identities=11% Similarity=0.349 Sum_probs=24.5
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-+++|++||+-+|....+|.|+-|+-..
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 4678999999999999999999997654
No 121
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=1.1e+02 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.4
Q ss_pred cCCCCCCCce-eecCCCCcceEEeecceEEEEeC
Q 044375 55 VTGALGPESI-AFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 55 ~~~~~GPEsi-AfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
.....|| .+ .+++.|+-+|-|+.||+|+..+.
T Consensus 20 ~~~~~G~-~isc~~s~~~~vvigt~~G~V~~Ln~ 52 (933)
T KOG2114|consen 20 LENFVGN-AISCCSSSTGSVVIGTADGRVVILNS 52 (933)
T ss_pred cccCCCC-ceeEEcCCCceEEEeeccccEEEecc
Confidence 3445677 44 67888878999999999999875
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=21.04 E-value=91 Score=28.88 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=35.8
Q ss_pred CccccccCceeecc----CCCCCCCceeecCCCCcceEEeecceEEEEeC
Q 044375 42 GSNNNLEGSRIIQV----TGALGPESIAFDPNGDGPYTGVANGRILKWQG 87 (116)
Q Consensus 42 a~N~~L~~ae~l~~----~~~~GPEsiAfD~~G~g~YTG~~DGrIlR~~~ 87 (116)
+.|+-..+.++|-- +.-.-|-+-+|++||..+-+|+.||-|--|+.
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 56777766665543 23446788899999998999999999999984
No 123
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.02 E-value=1.3e+02 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.9
Q ss_pred eecCCCCcceEEeecceEEEEeCCCCCeEEEEEcCC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGDELGWTEFAVTTS 100 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~~~~w~~fA~Ts~ 100 (116)
.++.+|. +|+++.||+|.-++++... +.|.+...
T Consensus 64 ~~~~dg~-v~~~~~~G~i~A~d~~~g~-~~W~~~~~ 97 (370)
T COG1520 64 PADGDGT-VYVGTRDGNIFALNPDTGL-VKWSYPLL 97 (370)
T ss_pred cEeeCCe-EEEecCCCcEEEEeCCCCc-EEecccCc
Confidence 4666787 9999999999999987633 33544444
No 124
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=20.94 E-value=64 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=14.1
Q ss_pred eecCCCCcceEEeecceEEEEeCC
Q 044375 65 AFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 65 AfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
.++.. |-+++.+||||--.-.|
T Consensus 11 ~i~~~--GrF~AysDgrVr~~F~D 32 (85)
T PF15016_consen 11 SIPGV--GRFTAYSDGRVRVHFDD 32 (85)
T ss_pred ecCCc--eEEEEEcCCeEEEEEcC
Confidence 44434 45888888888665444
No 125
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=20.87 E-value=1.3e+02 Score=25.24 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=21.7
Q ss_pred Cce-eecCCCCcceEEeecceEEEEeCC
Q 044375 62 ESI-AFDPNGDGPYTGVANGRILKWQGD 88 (116)
Q Consensus 62 Esi-AfD~~G~g~YTG~~DGrIlR~~~~ 88 (116)
||| .+|+-|-++...+.||+|+|+.+.
T Consensus 1 ~SId~~d~~Gcni~v~~r~~~V~Ri~p~ 28 (366)
T cd02774 1 ESIDVLDSLGSNIRVDIKGNEILRILPK 28 (366)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEecC
Confidence 345 457788889999999999999874
No 126
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=20.21 E-value=1.1e+02 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=11.9
Q ss_pred CCchhhHHHHHHHHHHHHHhhhh
Q 044375 1 MNRNKKIVASAAIVIAIVSVIIS 23 (116)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~ 23 (116)
|+-.|+|++++++++.++.+..+
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~~sa 23 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGTASA 23 (170)
T ss_pred CchHHHHHHHHHHHHHHHHhhhh
Confidence 66666666666634444423333
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.12 E-value=83 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=24.1
Q ss_pred CceeecCCCCcceEEeecceEEEEeCCC
Q 044375 62 ESIAFDPNGDGPYTGVANGRILKWQGDE 89 (116)
Q Consensus 62 EsiAfD~~G~g~YTG~~DGrIlR~~~~~ 89 (116)
-++||.++|..+.+|.+.|+|+.|+-..
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEeccc
Confidence 4679999999999999999999987543
No 128
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=20.06 E-value=85 Score=26.40 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=16.9
Q ss_pred Cceeec----CCC--CcceEEeecceEEE
Q 044375 62 ESIAFD----PNG--DGPYTGVANGRILK 84 (116)
Q Consensus 62 EsiAfD----~~G--~g~YTG~~DGrIlR 84 (116)
=+|++| .+| ...|.|+.||+|+|
T Consensus 367 T~i~v~~v~~~~~~~tV~flGT~~G~l~K 395 (433)
T PF01403_consen 367 TSIAVDRVQVENGSYTVAFLGTDDGRLHK 395 (433)
T ss_dssp EEEEEEEEEETTTCEEEEEEEETTSEEEE
T ss_pred eEEEEEEEecCCCcEEEEEEecCCceEEE
Confidence 456777 232 46889999999995
Done!