Query 044382
Match_columns 543
No_of_seqs 208 out of 2814
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6E-34 1.3E-38 316.9 23.2 457 47-531 68-565 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.3E-34 2E-38 315.4 22.0 453 46-533 116-591 (968)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-28 2.9E-33 274.0 26.0 436 10-528 485-945 (1153)
4 KOG0472 Leucine-rich repeat pr 99.9 3.2E-29 7E-34 228.8 -7.1 436 43-524 38-539 (565)
5 KOG4194 Membrane glycoprotein 99.9 4.3E-26 9.2E-31 217.7 5.6 384 43-522 47-448 (873)
6 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.6E-30 214.7 3.9 368 43-469 73-448 (873)
7 KOG0444 Cytoskeletal regulator 99.9 9.3E-27 2E-31 223.9 -9.2 178 311-528 196-377 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-25 2.4E-30 216.5 -3.2 361 46-475 5-377 (1255)
9 PLN03210 Resistant to P. syrin 99.9 2.6E-22 5.6E-27 224.0 21.5 343 100-531 554-911 (1153)
10 KOG4658 Apoptotic ATPase [Sign 99.9 2.2E-22 4.8E-27 213.1 12.3 169 8-185 476-653 (889)
11 KOG0618 Serine/threonine phosp 99.9 4.1E-25 8.9E-30 222.0 -9.7 421 48-525 21-488 (1081)
12 KOG0618 Serine/threonine phosp 99.9 1.6E-24 3.5E-29 217.8 -7.1 404 50-497 47-488 (1081)
13 KOG0472 Leucine-rich repeat pr 99.9 4.4E-24 9.6E-29 195.3 -5.4 406 45-499 65-541 (565)
14 KOG4237 Extracellular matrix p 99.7 7.4E-18 1.6E-22 154.6 1.0 267 83-376 74-357 (498)
15 KOG4237 Extracellular matrix p 99.7 5.4E-18 1.2E-22 155.5 0.0 406 42-494 61-497 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 4.2E-15 9.2E-20 154.8 15.5 97 394-499 362-458 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 9.3E-15 2E-19 152.3 15.7 74 395-471 383-456 (788)
18 KOG0617 Ras suppressor protein 99.5 1.4E-16 3.1E-21 129.5 -3.6 147 48-206 33-181 (264)
19 PRK15370 E3 ubiquitin-protein 99.5 1.5E-13 3.4E-18 144.1 11.6 80 105-192 179-258 (754)
20 KOG0617 Ras suppressor protein 99.5 2.1E-15 4.6E-20 122.8 -2.6 120 80-205 37-157 (264)
21 PRK15370 E3 ubiquitin-protein 99.5 2.2E-13 4.8E-18 143.0 10.0 100 80-194 182-281 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.4 5.3E-13 1.2E-17 142.3 7.6 99 105-204 546-648 (889)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-12 3.8E-17 126.2 2.8 284 53-375 3-317 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 7.1E-13 1.5E-17 128.9 -2.4 282 82-404 4-317 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3E-15 99.3 4.0 124 72-204 15-146 (175)
26 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 96.0 5.0 125 48-184 19-150 (175)
27 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 107.4 -0.1 197 310-520 119-333 (505)
28 KOG1259 Nischarin, modulator o 98.9 5.1E-10 1.1E-14 100.0 1.1 133 45-191 281-415 (490)
29 KOG4341 F-box protein containi 98.8 4.2E-11 9.2E-16 111.7 -6.9 166 366-537 269-450 (483)
30 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 103.2 0.2 158 45-209 118-282 (505)
31 COG4886 Leucine-rich repeat (L 98.8 8.8E-09 1.9E-13 103.2 6.3 102 102-205 114-216 (394)
32 KOG0532 Leucine-rich repeat (L 98.7 5.9E-10 1.3E-14 108.1 -3.8 135 48-195 75-209 (722)
33 KOG4341 F-box protein containi 98.7 1.7E-10 3.8E-15 107.6 -7.8 233 288-529 139-388 (483)
34 KOG1259 Nischarin, modulator o 98.7 6E-09 1.3E-13 93.3 1.3 100 102-205 282-381 (490)
35 PF13855 LRR_8: Leucine rich r 98.6 3.7E-08 8.1E-13 69.1 4.3 58 104-161 1-60 (61)
36 COG4886 Leucine-rich repeat (L 98.6 4.6E-08 1E-12 98.0 6.4 123 71-203 114-237 (394)
37 PLN03150 hypothetical protein; 98.6 7E-08 1.5E-12 101.4 7.7 92 105-196 419-512 (623)
38 PF13855 LRR_8: Leucine rich r 98.6 8.5E-08 1.8E-12 67.3 4.7 60 460-524 1-60 (61)
39 KOG1909 Ran GTPase-activating 98.5 1.8E-08 3.8E-13 92.4 -0.1 206 96-324 22-253 (382)
40 KOG0532 Leucine-rich repeat (L 98.5 2.2E-08 4.8E-13 97.4 -0.1 148 50-211 100-247 (722)
41 PLN03150 hypothetical protein; 98.5 2E-07 4.2E-12 98.0 6.1 77 129-205 420-497 (623)
42 KOG1909 Ran GTPase-activating 98.3 1.1E-07 2.4E-12 87.3 -0.4 158 46-206 28-221 (382)
43 PF12799 LRR_4: Leucine Rich r 98.3 6.6E-07 1.4E-11 57.3 3.1 40 104-143 1-40 (44)
44 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.8E-12 94.9 -0.4 103 99-205 90-193 (414)
45 KOG2120 SCF ubiquitin ligase, 98.2 7.2E-08 1.6E-12 86.5 -3.9 154 48-208 185-348 (419)
46 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.7E-12 85.0 -3.1 62 284-345 310-373 (419)
47 PRK15386 type III secretion pr 98.1 2E-05 4.4E-10 76.2 11.0 62 281-348 46-107 (426)
48 KOG4579 Leucine-rich repeat (L 98.1 1.7E-07 3.6E-12 74.3 -3.4 114 48-169 27-141 (177)
49 PF12799 LRR_4: Leucine Rich r 98.0 4.7E-06 1E-10 53.4 2.3 39 127-166 1-39 (44)
50 KOG1859 Leucine-rich repeat pr 98.0 5.6E-07 1.2E-11 90.3 -3.1 129 43-185 159-290 (1096)
51 KOG3665 ZYG-1-like serine/thre 98.0 4.3E-06 9.3E-11 87.8 3.1 137 46-189 120-265 (699)
52 KOG4579 Leucine-rich repeat (L 97.9 1.3E-06 2.8E-11 69.4 -0.8 115 74-192 25-140 (177)
53 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.9E-11 87.7 -1.8 103 102-208 70-172 (414)
54 PRK15386 type III secretion pr 97.8 0.00015 3.2E-09 70.4 11.1 13 250-262 50-62 (426)
55 KOG1859 Leucine-rich repeat pr 97.8 6.6E-07 1.4E-11 89.8 -6.2 148 46-205 107-261 (1096)
56 COG5238 RNA1 Ran GTPase-activa 97.7 8.6E-06 1.9E-10 72.5 0.6 208 97-324 23-254 (388)
57 KOG1644 U2-associated snRNP A' 97.6 6.4E-05 1.4E-09 64.2 4.4 101 78-185 44-151 (233)
58 KOG1644 U2-associated snRNP A' 97.6 7.8E-05 1.7E-09 63.6 4.3 100 104-206 42-148 (233)
59 KOG3665 ZYG-1-like serine/thre 97.6 4.9E-05 1.1E-09 80.0 3.6 103 125-231 120-227 (699)
60 KOG1947 Leucine rich repeat pr 97.5 3.2E-06 6.9E-11 87.4 -6.2 245 249-531 185-445 (482)
61 KOG1947 Leucine rich repeat pr 97.5 4.8E-06 1E-10 86.0 -5.1 65 461-530 352-418 (482)
62 KOG2982 Uncharacterized conser 97.3 0.0002 4.4E-09 64.8 3.9 77 82-160 77-156 (418)
63 KOG2982 Uncharacterized conser 97.2 7E-05 1.5E-09 67.8 -0.3 203 287-501 45-265 (418)
64 KOG2123 Uncharacterized conser 97.1 3.4E-05 7.3E-10 69.1 -3.1 58 102-160 39-98 (388)
65 KOG2123 Uncharacterized conser 97.1 5.7E-05 1.2E-09 67.7 -2.0 101 102-205 17-124 (388)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00072 1.6E-08 60.5 2.5 90 102-192 63-160 (260)
67 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.8E-08 58.9 3.2 101 102-205 41-150 (260)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0018 3.8E-08 34.4 1.0 17 129-145 2-18 (22)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0021 4.5E-08 34.1 1.0 22 105-126 1-22 (22)
70 KOG3864 Uncharacterized conser 96.1 0.00079 1.7E-08 57.7 -1.6 67 459-528 124-191 (221)
71 KOG3864 Uncharacterized conser 95.0 0.0023 5.1E-08 54.9 -2.7 67 435-501 123-192 (221)
72 PF13504 LRR_7: Leucine rich r 94.7 0.018 3.8E-07 28.2 1.1 13 129-141 3-15 (17)
73 PF13504 LRR_7: Leucine rich r 94.3 0.027 5.9E-07 27.6 1.2 17 104-120 1-17 (17)
74 PF13306 LRR_5: Leucine rich r 94.1 0.39 8.5E-06 39.1 8.7 64 434-502 55-118 (129)
75 COG5238 RNA1 Ran GTPase-activa 94.1 0.067 1.5E-06 48.4 4.2 156 47-205 29-221 (388)
76 KOG0473 Leucine-rich repeat pr 93.6 0.0044 9.5E-08 54.4 -4.0 59 102-160 63-121 (326)
77 PF13306 LRR_5: Leucine rich r 93.2 0.43 9.4E-06 38.8 7.5 109 414-532 10-120 (129)
78 KOG0473 Leucine-rich repeat pr 92.4 0.0083 1.8E-07 52.7 -4.0 89 99-188 37-125 (326)
79 smart00369 LRR_TYP Leucine-ric 92.1 0.12 2.6E-06 28.5 1.9 19 127-145 2-20 (26)
80 smart00370 LRR Leucine-rich re 92.1 0.12 2.6E-06 28.5 1.9 19 127-145 2-20 (26)
81 smart00367 LRR_CC Leucine-rich 88.9 0.27 5.9E-06 27.1 1.4 19 512-530 1-19 (26)
82 smart00370 LRR Leucine-rich re 88.1 0.32 6.8E-06 26.8 1.3 20 103-122 1-20 (26)
83 smart00369 LRR_TYP Leucine-ric 88.1 0.32 6.8E-06 26.8 1.3 20 103-122 1-20 (26)
84 smart00364 LRR_BAC Leucine-ric 79.7 1.2 2.6E-05 24.5 1.2 17 128-144 3-19 (26)
85 KOG4308 LRR-containing protein 75.7 0.077 1.7E-06 53.8 -7.5 41 252-299 262-302 (478)
86 PF13516 LRR_6: Leucine Rich r 72.6 4.1 8.9E-05 21.7 2.2 10 151-160 3-12 (24)
87 smart00365 LRR_SD22 Leucine-ri 71.4 3.3 7.1E-05 22.9 1.6 16 127-142 2-17 (26)
88 smart00368 LRR_RI Leucine rich 58.0 7.8 0.00017 21.7 1.5 14 127-140 2-15 (28)
89 KOG4308 LRR-containing protein 53.8 0.6 1.3E-05 47.5 -6.0 164 47-211 114-303 (478)
90 KOG3763 mRNA export factor TAP 37.7 28 0.0006 35.6 2.7 36 102-137 216-254 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-34 Score=316.85 Aligned_cols=457 Identities=17% Similarity=0.210 Sum_probs=265.6
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCccccC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGD 125 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~~ 125 (543)
..+++.|+++.|.+.+... ..+..+++|+.|. +++|.+.+.+|..++. .+++|++|++++|.+. .+|. +.
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~---Ls~n~~~~~ip~~~~~---~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTIN---LSNNQLSGPIPDDIFT---TSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEE---CCCCccCCcCChHHhc---cCCCCCEEECcCCccccccCc--cc
Confidence 3578888888887765543 5566666766665 8888887755555444 6777777777777655 2332 34
Q ss_pred cccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 126 LRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 126 l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|++|++++|.++ .+|..++.+++|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 566666666666655 4466666666666666666544455555566666666666666664445555566666666664
Q ss_pred ceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCC-------------c
Q 044382 205 NFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSS-------------T 271 (543)
Q Consensus 205 ~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------------~ 271 (543)
+..+... ......+..++.++ .|.+.... .....+..+..+++|++|++++|......+. .
T Consensus 219 L~~n~l~-~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLS-GEIPYEIGGLTSLN-HLDLVYNN----LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccC-CcCChhHhcCCCCC-EEECcCce----eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 4333221 11222233333333 33332211 1111122244444444444444332111000 0
Q ss_pred ccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcccee
Q 044382 272 EAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVN 349 (543)
Q Consensus 272 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~ 349 (543)
........+..+..+++|+.|++++|... ..|.++.. +++|+.|++++|...+.++ .++.+++|+.|++++|....
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 00001112233445667777777766543 33444443 6677777777776655555 56667777777777664332
Q ss_pred eeCccccC----------------CC--CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCC
Q 044382 350 RLGSKFYG----------------DD--SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 350 ~~~~~~~~----------------~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
.++..+.. .. ....+++|+.|++.++....... ..+..+++|+.|++++ +.+++.+
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~Ls~-N~l~~~~ 444 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP-----SEFTKLPLVYFLDISN-NNLQGRI 444 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-----hhHhcCCCCCEEECcC-CcccCcc
Confidence 22221111 00 02235566666666543221111 1145677777777777 3566555
Q ss_pred CC---CCCCccEEEEecccCcccc--cCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCC
Q 044382 412 PE---HLPALEMLVIVECNELSIS--IASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIP 485 (543)
Q Consensus 412 p~---~l~~L~~L~l~~~~~l~~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 485 (543)
|. .+++|+.|++.+|...... ....++|+.|++++|... ..+..+..+++|++|++++|.....+|.. +..++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCcc
Confidence 53 5677888888877644311 112578889999888775 46667788999999999997554556655 78899
Q ss_pred CccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 486 KLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 486 ~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
+|++|++++|.-...+ |..+..+++|+.|++++|+-...+|.
T Consensus 524 ~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 524 KLVSLDLSHNQLSGQI----PASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred CCCEEECCCCcccccC----ChhHhCcccCCEEECCCCcccccCCh
Confidence 9999999996433445 66889999999999999977666664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-34 Score=315.35 Aligned_cols=453 Identities=21% Similarity=0.230 Sum_probs=304.8
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~ 124 (543)
-..++++|++++|.+.+.... ..+++|++| ++++|.+.+ .++..++++++|++|++++|.+. .+|..++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L---~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR---GSIPNLETL---DLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCCCCCEEECcCCccccccCc---cccCCCCEE---ECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 346789999999887543321 234555555 488888776 44556668888888888888865 5677888
Q ss_pred CcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 203 (543)
++++|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 8888888888888876 568888888888888888876666778778888888888888888556677778888888888
Q ss_pred cceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCc------------
Q 044382 204 CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSST------------ 271 (543)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------ 271 (543)
.+..+... ......+.++..++ .+.+.... .....+..+..+++|+.|++++|......+..
T Consensus 266 ~L~~n~l~-~~~p~~l~~l~~L~-~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 266 FLYQNKLS-GPIPPSIFSLQKLI-SLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred ECcCCeee-ccCchhHhhccCcC-EEECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 65443321 11223334444444 44433211 11122233455666666666555442211100
Q ss_pred -ccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccce
Q 044382 272 -EAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRV 348 (543)
Q Consensus 272 -~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l 348 (543)
........+..+..+++|+.|++++|... .+|.++.. +++|+.|++.+|...+.++ .++.+++|++|++++|...
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 00000112223344556666666655532 33444433 5566777777666655555 5677888888888888543
Q ss_pred eeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCC--CCCccEEEEecc
Q 044382 349 NRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH--LPALEMLVIVEC 426 (543)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~--l~~L~~L~l~~~ 426 (543)
..++.. ...+++|+.|+++++.... ..... ...+++|+.|++++| .+.+.+|.. .++|+.|++.+|
T Consensus 418 ~~~p~~------~~~l~~L~~L~Ls~N~l~~-~~~~~----~~~l~~L~~L~L~~n-~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 418 GELPSE------FTKLPLVYFLDISNNNLQG-RINSR----KWDMPSLQMLSLARN-KFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred eECChh------HhcCCCCCEEECcCCcccC-ccChh----hccCCCCcEEECcCc-eeeeecCcccccccceEEECcCC
Confidence 333322 3458899999999864322 22111 357999999999996 566677753 468999999988
Q ss_pred cCcc---cccCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 427 NELS---ISIASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 427 ~~l~---~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.... ..+..+++|+.|++++|... .++..+..+++|++|+|++|.....+|.. +..+++|++|++++|+-...+
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~- 563 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEI- 563 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh-HhCcccCCEEECCCCcccccC-
Confidence 6543 23456889999999999886 47778889999999999997444445544 889999999999997655567
Q ss_pred ccCccccccCCccceEeeccCCCCcccchhh
Q 044382 503 KSHNELLQDICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 503 ~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
|..+..+++|+.|++++|+-...+|...
T Consensus 564 ---p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 564 ---PKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred ---ChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 6688999999999999998777777543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=1.4e-28 Score=274.00 Aligned_cols=436 Identities=18% Similarity=0.181 Sum_probs=278.0
Q ss_pred CCcEEEchhHHHHHHHhccCce-------EEeecc--cccccccCCCCCceEEEeeccccCCcc-chhhhhcCCCceEEe
Q 044382 10 ASRFVMHDLISDLAQWAAGDIY-------FTMEYT--SEVNKQQSFPKNLRHLSYIPEYFDGGK-RFEDLYDIQHLRTFL 79 (543)
Q Consensus 10 ~~~~~mhd~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~ 79 (543)
.+.++|||++|+||++++.++. +.+... ........-..+++++++....+.... ...+|..+.+|+.|.
T Consensus 485 ~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 485 EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 3579999999999999987542 222110 001112233467888887766553322 235677888888887
Q ss_pred ecccC---CCccccccccccccccccC-CeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhccccccee
Q 044382 80 PVRLS---NGFLSGYLACSILPKLFKL-QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTL 155 (543)
Q Consensus 80 ~~~l~---~n~~~~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 155 (543)
+..-. .+.... .++..+..+ ..|+.|++.++.+..+|..| ...+|+.|++.+|.+..+|.++..+++|+.|
T Consensus 565 ~~~~~~~~~~~~~~----~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 565 FYTKKWDQKKEVRW----HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred Eeccccccccccee----ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEE
Confidence 53221 111222 334444455 46999999999999999887 5799999999999999999999999999999
Q ss_pred ecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceeccccc
Q 044382 156 LLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLE 235 (543)
Q Consensus 156 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~ 235 (543)
++++|..+..+|. ++.+++|+.|++.+|..+..+|..++.+++|+.|++..+.. +..+.
T Consensus 640 ~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-----------L~~Lp--------- 698 (1153)
T PLN03210 640 DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-----------LEILP--------- 698 (1153)
T ss_pred ECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-----------cCccC---------
Confidence 9999888888886 88999999999999987888998888888888886432211 10100
Q ss_pred CcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCcc
Q 044382 236 NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLV 315 (543)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 315 (543)
..+ ++++|+.|+++++..... . . ...++|+.|.+.++....+|..+ .+++|+
T Consensus 699 ----------~~i-~l~sL~~L~Lsgc~~L~~-----------~-p--~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~ 750 (1153)
T PLN03210 699 ----------TGI-NLKSLYRLNLSGCSRLKS-----------F-P--DISTNISWLDLDETAIEEFPSNL---RLENLD 750 (1153)
T ss_pred ----------CcC-CCCCCCEEeCCCCCCccc-----------c-c--cccCCcCeeecCCCccccccccc---cccccc
Confidence 001 356677777765542100 0 0 11345666666666555555433 245555
Q ss_pred EEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCc
Q 044382 316 TLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPK 395 (543)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 395 (543)
+|.+.++........+..++ . .....+++|+.|++++++.+..+... ++++++
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~----------------~------~~~~~~~sL~~L~Ls~n~~l~~lP~s-----i~~L~~ 803 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLT----------------P------LMTMLSPSLTRLFLSDIPSLVELPSS-----IQNLHK 803 (1153)
T ss_pred cccccccchhhccccccccc----------------h------hhhhccccchheeCCCCCCccccChh-----hhCCCC
Confidence 55554432110000000000 0 00112355666666665444433221 456777
Q ss_pred ccEEeeccCcCccCCCCC--CCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCC
Q 044382 396 LRELHILRCSKLQGTFPE--HLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 473 (543)
Q Consensus 396 L~~L~l~~c~~l~~~lp~--~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 473 (543)
|+.|++++|+.++ .+|. .+++|++|++.+|..+.......++|+.|+++++....+|..+..+++|++|++++|+.+
T Consensus 804 L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 804 LEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 7777777776666 6663 356777777777766653333456788888888887778888888999999999999999
Q ss_pred cccCCCcCCCCCCccEEecccCCCCccccccC-cc--------ccccCCccceEeeccCCCCcc
Q 044382 474 VFLSGPLKPRIPKLEELKINNIQNETCIWKSH-NE--------LLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 474 ~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~--------~l~~l~~L~~L~l~~c~~l~~ 528 (543)
..+|.. +..+++|+.+++++|.+++.++... |. ....+++...+.+.+|.++..
T Consensus 883 ~~l~~~-~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 883 QRVSLN-ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CccCcc-cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 988876 6778899999999998887653110 00 011234445567777877653
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.2e-29 Score=228.76 Aligned_cols=436 Identities=19% Similarity=0.220 Sum_probs=303.2
Q ss_pred ccCCCC--CceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC
Q 044382 43 QQSFPK--NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP 120 (543)
Q Consensus 43 ~~~~~~--~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 120 (543)
...||. .++.+.++.|...... .++.+|..|.+++.++|.+. ..|++++.+..+..|+.+.|++..+|
T Consensus 38 ~e~wW~qv~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-----~lp~aig~l~~l~~l~vs~n~ls~lp 107 (565)
T KOG0472|consen 38 GENWWEQVDLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-----QLPAAIGELEALKSLNVSHNKLSELP 107 (565)
T ss_pred hhhhhhhcchhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-----hCCHHHHHHHHHHHhhcccchHhhcc
Confidence 445554 3667888888775444 25677777888889999988 67888999999999999999999999
Q ss_pred ccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 200 (543)
+.++.+..|+.|+.+.|.+.++|++++.+..|+.++..+| .+..+|.+++.+.+|..+++.+|+ +..+|+..-+++.|
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRL 185 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 688899889999999999999999 88888776669999
Q ss_pred ccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHh
Q 044382 201 QTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVL 280 (543)
Q Consensus 201 ~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 280 (543)
++|+...+ .-...+.+++.+..+. .+++.. . .. .+.+ .|.+|..|+++.+..|.+ +.-..
T Consensus 186 ~~ld~~~N--~L~tlP~~lg~l~~L~-~LyL~~---N-ki-~~lP-ef~gcs~L~Elh~g~N~i-----------~~lpa 245 (565)
T KOG0472|consen 186 KHLDCNSN--LLETLPPELGGLESLE-LLYLRR---N-KI-RFLP-EFPGCSLLKELHVGENQI-----------EMLPA 245 (565)
T ss_pred Hhcccchh--hhhcCChhhcchhhhH-HHHhhh---c-cc-ccCC-CCCccHHHHHHHhcccHH-----------HhhHH
Confidence 99863322 1233445566666554 344321 1 11 1122 388888999998866654 11223
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceee---------
Q 044382 281 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNR--------- 350 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~--------- 350 (543)
+....++++..|++.+|...++|..+.- +.+|++|++++|.. ..+| .++++ .|+.|.+.||+--+.
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 4456788999999999999999987765 78899999999855 4555 88999 899999999752110
Q ss_pred -------------eCcccc-CC------------CCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc-
Q 044382 351 -------------LGSKFY-GD------------DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR- 403 (543)
Q Consensus 351 -------------~~~~~~-~~------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~- 403 (543)
.+.... +. .......+.+.|++++ .+++.+....+- .+.-.-.+.++++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfe--a~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFE--AAKSEIVTSVNFSKN 398 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHH--HhhhcceEEEecccc
Confidence 000000 00 0022233455555554 222222110000 00000022333333
Q ss_pred ----------------------CcCccCCCCC---CCCCccEEEEecc--cCcccccCCCCccceEEEcCCCCeeeeccc
Q 044382 404 ----------------------CSKLQGTFPE---HLPALEMLVIVEC--NELSISIASLPALCKMEIGGCKKVVWRSAT 456 (543)
Q Consensus 404 ----------------------c~~l~~~lp~---~l~~L~~L~l~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 456 (543)
.+.+. .+|. .+++|..|++.++ ..+...++.+..|+.|+|+.|.+-.+|.+.
T Consensus 399 qL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 399 QLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECL 477 (565)
T ss_pred hHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHH
Confidence 12332 4442 3455666666554 233344555666777888777777777777
Q ss_pred CCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 457 DHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 457 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
..+.-|+.+-.++ +.+..+++..+.++.+|.+|++.+ +.+.++ |..++++++|++|+++|+|
T Consensus 478 y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~I----Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 478 YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQI----PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhC----ChhhccccceeEEEecCCc
Confidence 6666666666665 588888887789999999999999 799999 5589999999999999986
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-26 Score=217.73 Aligned_cols=384 Identities=17% Similarity=0.164 Sum_probs=208.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP 120 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 120 (543)
+...+.+.+-|+++.+++..+.. ..+..+ +.-++| ++++|.+.. +...+| .++++|+.+.+.+|.++.+|
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~-~~l~g~lp~~t~~L---dlsnNkl~~-id~~~f---~nl~nLq~v~l~~N~Lt~IP 118 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDK-SRLKGFLPSQTQTL---DLSNNKLSH-IDFEFF---YNLPNLQEVNLNKNELTRIP 118 (873)
T ss_pred CCcCCCCceeeecCccccccccc-cccCCcCccceeee---ecccccccc-CcHHHH---hcCCcceeeeeccchhhhcc
Confidence 44555666667766666544322 111111 223334 366665553 222222 36666666666666666666
Q ss_pred ccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccccccc-cccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPLG-IGKL 197 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l 197 (543)
.......+|+.|+|.+|.|+++ .+.+..++.|+.||++.| .+.++|. .+.+-.++++|++++|. ++.+-.+ |..+
T Consensus 119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~l 196 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSL 196 (873)
T ss_pred cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-cccccccccccc
Confidence 6445555566666666666655 344566666666666664 4555542 24444566666666666 4444322 3333
Q ss_pred cccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHH
Q 044382 198 TCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEK 277 (543)
Q Consensus 198 ~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (543)
.+|-.|.+..+ .++......|+++++|+.|++..|.+- .
T Consensus 197 nsL~tlkLsrN------------------------------rittLp~r~Fk~L~~L~~LdLnrN~ir-----------i 235 (873)
T KOG4194|consen 197 NSLLTLKLSRN------------------------------RITTLPQRSFKRLPKLESLDLNRNRIR-----------I 235 (873)
T ss_pred chheeeecccC------------------------------cccccCHHHhhhcchhhhhhcccccee-----------e
Confidence 33333321111 111111122556666666666655540 0
Q ss_pred HHhcccCCCCCCcEEEEeccCCCCCCCC-CCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccc
Q 044382 278 DVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKF 355 (543)
Q Consensus 278 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~ 355 (543)
.-...+..+++|+.|.+..|.+..+..- |.. +.++++|+|+.|+....-. ++.++..|+.|+++.|
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N---------- 303 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN---------- 303 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhccchh----------
Confidence 0011223344455555555444333221 222 4556666666554432211 4445555555555544
Q ss_pred cCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC----CCCCccEEEEecccCcc-
Q 044382 356 YGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE----HLPALEMLVIVECNELS- 430 (543)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~~~l~- 430 (543)
.+..+...++ +.+++|+.|+|++ |+++ .+++ .+..|++|.++++.--.
T Consensus 304 ---------------------aI~rih~d~W----sftqkL~~LdLs~-N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 304 ---------------------AIQRIHIDSW----SFTQKLKELDLSS-NRIT-RLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ---------------------hhheeecchh----hhcccceeEeccc-cccc-cCChhHHHHHHHhhhhcccccchHHH
Confidence 2222222222 3566777777776 5666 5552 34566666666653221
Q ss_pred --cccCCCCccceEEEcCCCCee----eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccccc
Q 044382 431 --ISIASLPALCKMEIGGCKKVV----WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKS 504 (543)
Q Consensus 431 --~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 504 (543)
..+..+++|++|++++|...- -...+.++++|+.|.+-+ ++++.++..+|..+++|++|++.+ +-+.+|.
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq-- 432 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQ-- 432 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeec--
Confidence 245557888888888876532 234666788888888888 588888888888888888888888 6788887
Q ss_pred CccccccCCccceEeecc
Q 044382 505 HNELLQDICSLKRLLITS 522 (543)
Q Consensus 505 ~~~~l~~l~~L~~L~l~~ 522 (543)
|+.+... .|++|.+..
T Consensus 433 -~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 433 -PNAFEPM-ELKELVMNS 448 (873)
T ss_pred -ccccccc-hhhhhhhcc
Confidence 5577766 777776643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-25 Score=214.65 Aligned_cols=368 Identities=19% Similarity=0.218 Sum_probs=226.8
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-c
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-D 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~ 121 (543)
....|...+.|++++|.+..+.. ..|.++++|+.+. +..|.+.. +|.......+|+.|+|.+|.|+.+. +
T Consensus 73 ~g~lp~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~---l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 73 KGFLPSQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVN---LNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred CCcCccceeeeeccccccccCcH-HHHhcCCcceeee---eccchhhh-----cccccccccceeEEeeeccccccccHH
Confidence 45678889999999999877764 7788888888775 89998884 3333335577999999999999874 5
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-cccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~ 198 (543)
+++.++.|++|||+.|.|+++|. ++..-.++++|++++| .++.+.. .|..+.+|..|.++.|. +..+|. .|.+++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLP 221 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc-ccccCHHHhhhcc
Confidence 68999999999999999999964 4566689999999997 5666543 37788899999999999 888885 577899
Q ss_pred ccccccceEecCC--CCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccH
Q 044382 199 CLQTLCNFVVGKD--SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETE 276 (543)
Q Consensus 199 ~L~~L~~~~~~~~--~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (543)
+|+.|++..+... ....+.+|.++..++ +.-.+ +.......|..+.++++|++..|..+.
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~------I~kL~DG~Fy~l~kme~l~L~~N~l~~---------- 283 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRND------ISKLDDGAFYGLEKMEHLNLETNRLQA---------- 283 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhh--hhhcC------cccccCcceeeecccceeecccchhhh----------
Confidence 9999976544322 233344444444443 21111 111112236666777777776666421
Q ss_pred HHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccc
Q 044382 277 KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKF 355 (543)
Q Consensus 277 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~ 355 (543)
..-..+-.++.|+.|+++.|.+..+....+. ..++|+.|+|++|...+--+ .+..+..|++|.+++| .++.+....
T Consensus 284 -vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a 360 (873)
T KOG4194|consen 284 -VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA 360 (873)
T ss_pred -hhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhH
Confidence 1223455566777777777665443221111 25667777777665433222 4556667777777666 233322111
Q ss_pred cCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCC
Q 044382 356 YGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIAS 435 (543)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~ 435 (543)
...+.+|++|++..+. +...+.. ....+..+++|+.|.+.+ |+++ .+|. -.+..
T Consensus 361 -----f~~lssL~~LdLr~N~-ls~~IED-aa~~f~gl~~LrkL~l~g-Nqlk-~I~k-----------------rAfsg 414 (873)
T KOG4194|consen 361 -----FVGLSSLHKLDLRSNE-LSWCIED-AAVAFNGLPSLRKLRLTG-NQLK-SIPK-----------------RAFSG 414 (873)
T ss_pred -----HHHhhhhhhhcCcCCe-EEEEEec-chhhhccchhhhheeecC-ceee-ecch-----------------hhhcc
Confidence 2335666666666532 2211111 111134466666666666 4665 5541 13334
Q ss_pred CCccceEEEcCCCCeee-ecccCCCCCCceEEEcC
Q 044382 436 LPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRD 469 (543)
Q Consensus 436 ~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 469 (543)
+++|++|++.+|...++ +.+|..+ .|++|.+..
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 55555555555555443 2233333 555554443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=9.3e-27 Score=223.88 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=87.2
Q ss_pred CCCccEEEeecCCCC-CCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 311 FLNLVTLKFEDCGMC-TALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 311 l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
++.|+.|++++.+.. ..+| ++..+.+|..++++.| .+..++.-. ..+++|+.|+++++. ++.....
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecl------y~l~~LrrLNLS~N~-iteL~~~---- 263 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECL------YKLRNLRRLNLSGNK-ITELNMT---- 263 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHH------hhhhhhheeccCcCc-eeeeecc----
Confidence 445555555554332 2344 5556666666666554 333333222 235666666666642 2211111
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCC--eeeecccCCCCCCceEE
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKK--VVWRSATDHLGSQNSVV 466 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~ 466 (543)
.+...+|++|+++. |.++ .+|.. +..++.|+.|.+.+|+. -.+|..++.+..|+++.
T Consensus 264 -~~~W~~lEtLNlSr-NQLt-~LP~a------------------vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 264 -EGEWENLETLNLSR-NQLT-VLPDA------------------VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred -HHHHhhhhhhcccc-chhc-cchHH------------------HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 24556778888887 5777 77742 22233333333333322 11444444455555555
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
.++ +.++-+|.+ +..|+.|+.|.++. +++..+ |+.+.-++-|+.|++..+|++-.
T Consensus 323 aan-N~LElVPEg-lcRC~kL~kL~L~~-NrLiTL----PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 323 AAN-NKLELVPEG-LCRCVKLQKLKLDH-NRLITL----PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhc-cccccCchh-hhhhHHHHHhcccc-cceeec----hhhhhhcCCcceeeccCCcCccC
Confidence 555 344444444 44555555555544 444445 33455555555555555555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.1e-25 Score=216.49 Aligned_cols=361 Identities=19% Similarity=0.219 Sum_probs=203.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccC
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGD 125 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~ 125 (543)
+.+-+|..++++|++.+..-..+...++.++-|. +....+. .+|..++.+.+|++|.+++|++..+...++.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLk---Lnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLK---LNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEE---echhhhh-----hChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence 3455777788888877666556666666666665 5544444 4556666777777777777777766666777
Q ss_pred cccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccc-ccccccccc
Q 044382 126 LRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQT 202 (543)
Q Consensus 126 l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~ 202 (543)
++.||.+++..|++. .+|..+.++..|..||++.| .+.+.|..+..-+++-.|++++|. +..+|.. +.+++.|--
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhh
Confidence 777777777777665 56777777777777777775 567777777777777777777777 7777754 445555555
Q ss_pred ccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcc
Q 044382 203 LCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDM 282 (543)
Q Consensus 203 L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (543)
|+++.+.. +..+.....+..|+.|.+++|.. .--.+..
T Consensus 155 LDLS~NrL-------------------------------e~LPPQ~RRL~~LqtL~Ls~NPL-----------~hfQLrQ 192 (1255)
T KOG0444|consen 155 LDLSNNRL-------------------------------EMLPPQIRRLSMLQTLKLSNNPL-----------NHFQLRQ 192 (1255)
T ss_pred hccccchh-------------------------------hhcCHHHHHHhhhhhhhcCCChh-----------hHHHHhc
Confidence 54332211 11111233444555555544442 1122344
Q ss_pred cCCCCCCcEEEEeccC--CCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCC
Q 044382 283 LKPHKNLEQFGICGYG--GTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDD 359 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 359 (543)
+...++|+.|.+++.. ...+|..+.. +.+|..++++.|.. ..+| .+-++++|+.|++++| .++.....
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N-~iteL~~~----- 263 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGN-KITELNMT----- 263 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCC-CcchHHHhhhhhhheeccCcC-ceeeeecc-----
Confidence 4444555555555443 2234444443 55566666655433 2333 4445566666666655 33333211
Q ss_pred CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCcc-CCCCCCCCCccEEEEecccCc-----cccc
Q 044382 360 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQ-GTFPEHLPALEMLVIVECNEL-----SISI 433 (543)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~lp~~l~~L~~L~l~~~~~l-----~~~~ 433 (543)
...-.+|++|+++.+ .+...... +..+++|+.|.+.+ |+++ ..+|..+.+|..|.+...... ...+
T Consensus 264 -~~~W~~lEtLNlSrN-QLt~LP~a-----vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 264 -EGEWENLETLNLSRN-QLTVLPDA-----VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -HHHHhhhhhhccccc-hhccchHH-----HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 122445666666553 22222111 34566666666665 4554 234443333333332221111 1134
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcc
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
..+..|+.|.++.|...++|.++.-++-|+.|++.+++++--
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccC
Confidence 446667777777777777777777777777777777666543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.6e-22 Score=223.95 Aligned_cols=343 Identities=18% Similarity=0.253 Sum_probs=217.8
Q ss_pred cccCCeeeEEEecCCCc------c-ccCccccCc-ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHh
Q 044382 100 LFKLQRLRVFSLRGYHI------Y-ELPDSIGDL-RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMG 171 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l------~-~lp~~~~~l-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 171 (543)
|..|++|+.|.+..+.. . .+|..+..+ .+|+.|.+.++.++.+|..+ ...+|+.|++.+| .+..+|.++.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccc
Confidence 34777888877755421 1 355556554 35788888877777777766 4677788888775 4666777677
Q ss_pred hhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCc
Q 044382 172 NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK 251 (543)
Q Consensus 172 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~ 251 (543)
.+++|+.|+++++..++.+|. ++.+++|+.|.+..+.. +. ..+..+..+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~--------------L~----------------~lp~si~~L 680 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS--------------LV----------------ELPSSIQYL 680 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC--------------cc----------------ccchhhhcc
Confidence 777888888877665566653 55556666554321100 00 011124445
Q ss_pred cccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCC
Q 044382 252 KNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSV 331 (543)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 331 (543)
++|+.|+++++.. ...+|..+ .+++|+.|.+++|.....+|.+
T Consensus 681 ~~L~~L~L~~c~~----------------------------------L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 681 NKLEDLDMSRCEN----------------------------------LEILPTGI---NLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCCCEEeCCCCCC----------------------------------cCccCCcC---CCCCCCEEeCCCCCCccccccc
Confidence 5555555543321 22223222 2455666666666554444422
Q ss_pred CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccC-CC-CCCCCCCCcccEEeeccCcCccC
Q 044382 332 GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPH-GS-SQGVERFPKLRELHILRCSKLQG 409 (543)
Q Consensus 332 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~-~~~~~~~~~L~~L~l~~c~~l~~ 409 (543)
.++|++|+++++. ++.++.. ..+++|++|.+.++....-+... .. ......+++|+.|++++|+.+.
T Consensus 724 --~~nL~~L~L~~n~-i~~lP~~-------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~- 792 (1153)
T PLN03210 724 --STNISWLDLDETA-IEEFPSN-------LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV- 792 (1153)
T ss_pred --cCCcCeeecCCCc-ccccccc-------ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-
Confidence 3456666665552 3322211 13556666666543221110000 00 0002346799999999987776
Q ss_pred CCCC---CCCCccEEEEecccCccccc--CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCC
Q 044382 410 TFPE---HLPALEMLVIVECNELSISI--ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI 484 (543)
Q Consensus 410 ~lp~---~l~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 484 (543)
.+|. .+++|+.|++.+|..+.... ..+++|+.|++++|..+..... ..++|++|++++ +.++.+|.. +..+
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~-n~i~~iP~s-i~~l 868 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR-TGIEEVPWW-IEKF 868 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--cccccCEeECCC-CCCccChHH-HhcC
Confidence 7884 57789999999998776321 1488999999999987653222 257899999999 588889876 7899
Q ss_pred CCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 485 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 485 ~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
++|+.|++++|++++.+ |..+..+++|+.+++++|++++.++-
T Consensus 869 ~~L~~L~L~~C~~L~~l----~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRV----SLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCEEECCCCCCcCcc----CcccccccCCCeeecCCCcccccccC
Confidence 99999999999999999 45678899999999999999987654
No 10
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-22 Score=213.11 Aligned_cols=169 Identities=27% Similarity=0.315 Sum_probs=135.2
Q ss_pred CCCCcEEEchhHHHHHHHhcc-----CceEEeecc--cccccccCCCCCceEEEeeccccCCccchhhhhcCCCceEEee
Q 044382 8 NDASRFVMHDLISDLAQWAAG-----DIYFTMEYT--SEVNKQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLP 80 (543)
Q Consensus 8 ~~~~~~~mhd~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~ 80 (543)
+....|+|||+|||||.|+|+ ++..++..+ ...-+....+..+|++++.+|.+... ..-...++|++|.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLl- 551 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLL- 551 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEE-
Confidence 456899999999999999999 555554432 11124556678999999999987443 3334567899998
Q ss_pred cccCCCcc-ccccccccccccccCCeeeEEEecCCC-ccccCccccCcccccEEecCCCCccccchhhhcccccceeecC
Q 044382 81 VRLSNGFL-SGYLACSILPKLFKLQRLRVFSLRGYH-IYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLE 158 (543)
Q Consensus 81 ~~l~~n~~-~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 158 (543)
+.+|.. ...++..+|. .|+.|++|||++|. +..+|++++++-+||||+++++.+..+|.++++|..|.+|++.
T Consensus 552 --l~~n~~~l~~is~~ff~---~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 552 --LQRNSDWLLEISGEFFR---SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred --EeecchhhhhcCHHHHh---hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 555542 3345556677 99999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHhhhcccceeecCCCC
Q 044382 159 GCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 159 ~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
.+.....+|.....+++|++|.+....
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccchhhhcccccEEEeeccc
Confidence 887777776666679999999997655
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=4.1e-25 Score=221.96 Aligned_cols=421 Identities=21% Similarity=0.233 Sum_probs=261.0
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
+.+++|++..|..-.. ..+...+.-+ |+.++++.|.+. .||..+..+.+|+.|.++.|.+...|.++.++.
T Consensus 21 ~~~~~ln~~~N~~l~~-pl~~~~~~v~---L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSR-PLEFVEKRVK---LKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMR 91 (1081)
T ss_pred HHHHhhhccccccccC-chHHhhheee---eEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhh
Confidence 3377788877755322 2455555444 455569988888 577888899999999999999999999999999
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceE
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~ 207 (543)
+|++|+|.+|.+..+|.++..+.+|++||+++| ....+|..+..++.+.++..++|..+..++... .+++++..
T Consensus 92 ~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~ 165 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRL 165 (1081)
T ss_pred cchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhh
Confidence 999999999999999999999999999999997 677788878889999999998884344443321 22221111
Q ss_pred ecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCc--------------------cccceeeeeeecCCCC
Q 044382 208 VGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGK--------------------KNLKELSLNWTCSTDG 267 (543)
Q Consensus 208 ~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~--------------------~~L~~L~l~~~~~~~~ 267 (543)
.. .....+.++..+.+ .+++..... . ...+..+ ++++.|..+.|..+
T Consensus 166 n~-l~~~~~~~i~~l~~---~ldLr~N~~----~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-- 232 (1081)
T KOG0618|consen 166 NV-LGGSFLIDIYNLTH---QLDLRYNEM----E---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-- 232 (1081)
T ss_pred hh-cccchhcchhhhhe---eeecccchh----h---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--
Confidence 10 00111112222221 011100000 0 0001112 23333333333221
Q ss_pred CCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccc
Q 044382 268 LSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSR 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 347 (543)
....-....+|+.++++++....+|.|+.. +.+|+.+...+|.......-+....+|+.+.+..| .
T Consensus 233 -----------~~~~~p~p~nl~~~dis~n~l~~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-e 298 (1081)
T KOG0618|consen 233 -----------TLDVHPVPLNLQYLDISHNNLSNLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYN-E 298 (1081)
T ss_pred -----------eeccccccccceeeecchhhhhcchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-h
Confidence 111122244677777777777777777765 66777777776655221113334444444444443 3
Q ss_pred eeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC---------------------CCCCCCCCcccEEeeccCcC
Q 044382 348 VNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS---------------------SQGVERFPKLRELHILRCSK 406 (543)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---------------------~~~~~~~~~L~~L~l~~c~~ 406 (543)
++.++... .++..|++|++..+. +........ +-+-..++.|+.|.+.+ |.
T Consensus 299 l~yip~~l------e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~ 370 (1081)
T KOG0618|consen 299 LEYIPPFL------EGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NH 370 (1081)
T ss_pred hhhCCCcc------cccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cc
Confidence 33333221 224445555544321 111100000 00123566788888888 46
Q ss_pred ccC-CCC--CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCc
Q 044382 407 LQG-TFP--EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPL 480 (543)
Q Consensus 407 l~~-~lp--~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 480 (543)
++. .+| ..+.+||.|+++++.-.. ..+..++.|++|+++||+..+++..+..++.|++|...+ +.+...| +
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e- 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-E- 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-h-
Confidence 653 344 577889999998874332 245568888999999999988888888899999998888 5888888 4
Q ss_pred CCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 481 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+..++.|+.++++. ++++.+.. |..... ++||+|+++|++.
T Consensus 448 ~~~l~qL~~lDlS~-N~L~~~~l--~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSC-NNLSEVTL--PEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEeccc-chhhhhhh--hhhCCC-cccceeeccCCcc
Confidence 67899999999987 78887632 212221 7999999999876
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-24 Score=217.75 Aligned_cols=404 Identities=19% Similarity=0.202 Sum_probs=270.5
Q ss_pred ceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~ 128 (543)
++.|+++.|.+. .|+ ..+.+.+|..++++.|.+. ..+.+.+++.+|++|.|.+|.+..+|.++.++++
T Consensus 47 L~~l~lsnn~~~------~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS------SFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccc------cCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 889999999763 222 4566666777779999888 3556777999999999999999999999999999
Q ss_pred ccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEe
Q 044382 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
|++|++++|.+..+|..+..++.++.++.++|..+..++. .. ++.+++..+.+...++.++..++. .|++..+
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 9999999999999999999999999999999855554443 22 667777777766667777776666 3433333
Q ss_pred cCCCCCChhhhcccccccc------ceeccccc--CcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHH
Q 044382 209 GKDSGSGLRELKSLIHLQG------TLKISKLE--NIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKD 278 (543)
Q Consensus 209 ~~~~~~~~~~l~~l~~l~~------~L~~~~l~--~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (543)
... ...+..+.++..+.. .+++.+.. ........... .-..-.++++++++++... .
T Consensus 189 ~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~------------~ 255 (1081)
T KOG0618|consen 189 EME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS------------N 255 (1081)
T ss_pred hhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh------------c
Confidence 222 122222222222210 11111110 00000000000 0112257888998887763 2
Q ss_pred HhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCC
Q 044382 279 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGD 358 (543)
Q Consensus 279 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 358 (543)
.+..+..+.+|+.+...+|....+|..+.. .++|++|.+..|......+..+.+..|++|++..|. +...+..+...
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~--~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v 332 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISR--ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAV 332 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhh--hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhh
Confidence 335666788888888888877776665554 667777877777553333355667788888887662 22211111000
Q ss_pred --------------------CCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC----CC
Q 044382 359 --------------------DSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EH 414 (543)
Q Consensus 359 --------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~ 414 (543)
-....++.|+.|.+.++ .+++.++.. +..++.|+.|++++ |.+. .+| ..
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~----l~~~~hLKVLhLsy-NrL~-~fpas~~~k 405 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPV----LVNFKHLKVLHLSY-NRLN-SFPASKLRK 405 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhh----hccccceeeeeecc-cccc-cCCHHHHhc
Confidence 00234566778888874 555554433 47899999999999 6898 888 35
Q ss_pred CCCccEEEEecccC--cccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCC-CCccEEe
Q 044382 415 LPALEMLVIVECNE--LSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI-PKLEELK 491 (543)
Q Consensus 415 l~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~~L~~L~ 491 (543)
++.|++|.++++.- +...+..++.|+.|.-.+|....+| .+..++.|+.+|++. +.++.+-.. .... ++|++|+
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~-~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLP-EALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhh-hhCCCcccceee
Confidence 77888888888743 3445666899999999999888888 666699999999999 466654322 1223 8999999
Q ss_pred cccCCC
Q 044382 492 INNIQN 497 (543)
Q Consensus 492 l~~c~~ 497 (543)
++|+.+
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 999654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=4.4e-24 Score=195.35 Aligned_cols=406 Identities=19% Similarity=0.219 Sum_probs=278.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
+-...+..+.++.|...... .+..++..+++| +.+.|.+. .+|+.+..+..++.|+.++|.+.++|++++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp--~aig~l~~l~~l---~vs~n~ls-----~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLP--AAIGELEALKSL---NVSHNKLS-----ELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred hcccceeEEEeccchhhhCC--HHHHHHHHHHHh---hcccchHh-----hccHHHhhhhhhhhhhccccceeecCchHH
Confidence 34466788888888664332 444455555555 58888888 577888889999999999999999999999
Q ss_pred CcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
.+..|..|+..+|+++.+|+.++.+.+|..+++.+| .+..+|...-+++.|++||...|. ++.+|+.++.+.+|..|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHH
Confidence 999999999999999999999999999999999997 677777666669999999999999 999999999999999887
Q ss_pred ceEecCCCCCChhhhccccccccceecccccCcCCccchhhh-ccCCccccceeeeeeecCCCCCCCcccccHHHHhccc
Q 044382 205 NFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEA-RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDML 283 (543)
Q Consensus 205 ~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 283 (543)
+..+.. ..+.+++.++.++ ++++.. ...+..++ ..+++.++..|++..|... ..+..+
T Consensus 213 L~~Nki---~~lPef~gcs~L~-Elh~g~-----N~i~~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~ 271 (565)
T KOG0472|consen 213 LRRNKI---RFLPEFPGCSLLK-ELHVGE-----NQIEMLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEI 271 (565)
T ss_pred hhhccc---ccCCCCCccHHHH-HHHhcc-----cHHHhhHHHHhcccccceeeeccccccc------------cCchHH
Confidence 644432 2333455555555 444432 11222222 3557889999999777664 344566
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCC-------------------------------------
Q 044382 284 KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT------------------------------------- 326 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------------------- 326 (543)
..+.+|+.|++++|.+..+|...++ + .|+.|.+.||..-+
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgn--l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGN--L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHhhhhhhhcccCCccccCCccccc--c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 6788999999999999888887776 5 78888888876310
Q ss_pred C-----CCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc----------------------ccc
Q 044382 327 A-----LPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ----------------------EWE 379 (543)
Q Consensus 327 ~-----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~l~ 379 (543)
+ +++...+.+.+.|++++- .++.++.+.+.. ..-.-....+++.+. +.-
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea---~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEA---AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred CCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHH---hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0 112223456667777654 445554433221 000011222222211 111
Q ss_pred ccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCC---CccEEEEecccCc--ccccCCCCccceEEEcCCCCeeeec
Q 044382 380 EWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP---ALEMLVIVECNEL--SISIASLPALCKMEIGGCKKVVWRS 454 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~---~L~~L~l~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~ 454 (543)
+|. +.-++.+++|+.|++++ |-+. .+|..+. .|+.|+++.+..- ...+..+..++.+-.+++....++.
T Consensus 425 sfv----~~~l~~l~kLt~L~L~N-N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 425 SFV----PLELSQLQKLTFLDLSN-NLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred ccc----hHHHHhhhcceeeeccc-chhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 111 12257899999999998 5676 8996555 4666666554221 1122224445555555566655555
Q ss_pred -ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 455 -ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 455 -~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
.+.++.+|..|++.+ +.+..+|+. +++|.+|++|.+.| +.++
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~-LgnmtnL~hLeL~g-Npfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPI-LGNMTNLRHLELDG-NPFR 541 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChh-hccccceeEEEecC-CccC
Confidence 488899999999999 588999988 89999999999999 4555
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=7.4e-18 Score=154.62 Aligned_cols=267 Identities=18% Similarity=0.172 Sum_probs=134.3
Q ss_pred cCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCC-CCccccchh-hhcccccceeecCC
Q 044382 83 LSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSG-TVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
+..|.++ .||+.+|. .+++||+|||+.|+|+.| |.+|.+++.|-.|-+.+ |.|+++|.. +++|..|+.|.+.-
T Consensus 74 LdqN~I~-~iP~~aF~---~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 74 LDQNQIS-SIPPGAFK---TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eccCCcc-cCChhhcc---chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 5566666 24444444 666666666666666665 55666666666666555 566666543 55666666666665
Q ss_pred Cchhhhh-hHHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+ ...+..+++|..|.+.+|. ++.++. .+..+..++.+.+-.........+..+....... .....+....
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~-~ietsgarc~ 226 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN-PIETSGARCV 226 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc-hhhcccceec
Confidence 4 33333 2445666666666666666 555554 3555556655543222211111111110000000 0000000000
Q ss_pred CC-------ccchhhhccCCcccccee--eeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCC
Q 044382 238 KD-------IGDAKEARLDGKKNLKEL--SLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLG 307 (543)
Q Consensus 238 ~~-------~~~~~~~~l~~~~~L~~L--~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~ 307 (543)
.. ........+. ..++.+ .+.... ..........+.++++|++|++++|.++.+. .||.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d---------~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFL--CSLESLPSRLSSED---------FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chHHHHHHHhcccchhhhh--hhHHhHHHhhcccc---------CcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 00 0000000000 011111 000000 0011111233667889999999998877663 4555
Q ss_pred CCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
+ ...++.|.+..|+.. .+. .+..+..|++|++.+| .++.+.... ......|.+|.+..++
T Consensus 296 ~--~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-----F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 296 G--AAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-----FQTLFSLSTLNLLSNP 357 (498)
T ss_pred c--hhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCC-eeEEEeccc-----ccccceeeeeehccCc
Confidence 4 678888888887553 332 5677888999999888 444443222 2335567777776544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=5.4e-18 Score=155.52 Aligned_cols=406 Identities=17% Similarity=0.157 Sum_probs=241.4
Q ss_pred cccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecC-CCccccC
Q 044382 42 KQQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP 120 (543)
Q Consensus 42 ~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp 120 (543)
.+.++|.....+.+..|.|..+.. .+|..+.+||.| +++.|.++. |.+..|. .++.|..|-+-+ |+|+.+|
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~-~aF~~l~~LRrL---dLS~N~Is~-I~p~AF~---GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPP-GAFKTLHRLRRL---DLSKNNISF-IAPDAFK---GLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCCcceEEEeccCCcccCCh-hhccchhhhcee---cccccchhh-cChHhhh---hhHhhhHHHhhcCCchhhhh
Confidence 366889999999999999987765 666666666655 699999984 5445555 888888876655 8899998
Q ss_pred cc-ccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccc--------
Q 044382 121 DS-IGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEE-------- 189 (543)
Q Consensus 121 ~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-------- 189 (543)
.. |.++..|+.|.+.-|.+..+ ...+..+++|..|.+.+| .++.++. .+..+..++.+.+..|.++-.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 74 89999999999999999876 567889999999999996 7788876 578899999999887774322
Q ss_pred ----ccccccccccc--ccccceEe-cCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 190 ----MPLGIGKLTCL--QTLCNFVV-GKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 190 ----lp~~l~~l~~L--~~L~~~~~-~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
.|..++..... ..|+.... ........ ..+..++..+. .............|.++++|+.+++++|
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~---c~~esl~s~~~----~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFL---CSLESLPSRLS----SEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhh---hhHHhHHHhhc----cccCcCCcChHHHHhhcccceEeccCCC
Confidence 11111111111 11110000 00000000 01111110111 1111111222234889999999999888
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceee
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLT 341 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 341 (543)
..+. .....+.....++.|.+..|.+..+...+.. .+..|+.|++++|+.....+ .|..+..|.+|.
T Consensus 285 ~i~~-----------i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~-~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 285 KITR-----------IEDGAFEGAAELQELYLTRNKLEFVSSGMFQ-GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ccch-----------hhhhhhcchhhhhhhhcCcchHHHHHHHhhh-ccccceeeeecCCeeEEEecccccccceeeeee
Confidence 7642 2234566678889999988886655443322 48899999999987755444 677888888888
Q ss_pred ecCccceee-----eCcc-----ccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCC
Q 044382 342 VRGMSRVNR-----LGSK-----FYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 342 l~~~~~l~~-----~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
+-.|+.-=. .... ..+.......-.++.+.+++... .+.... . =++. +| .-.+.-
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~-~~~~c~--------~--~ee~---~~-~~s~~c 417 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAF-GDFRCG--------G--PEEL---GC-LTSSPC 417 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccc-cccccC--------C--cccc---CC-CCCCCC
Confidence 876642110 0000 11111122233455555554221 111000 0 0000 00 000122
Q ss_pred CCCCCCccEEEEecccCccc-ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEE
Q 044382 412 PEHLPALEMLVIVECNELSI-SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEEL 490 (543)
Q Consensus 412 p~~l~~L~~L~l~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L 490 (543)
|...+-+.++.=.....++. .-+.+..-.+|++.++.+..++.. .+.+| .+++++ +.+..+....|.++..|.+|
T Consensus 418 P~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred CCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH--HHhhh-hccccc-Cceehhhcccccchhhhhee
Confidence 22222222221111111111 111244556677888877777666 47788 888888 57888888888899999988
Q ss_pred eccc
Q 044382 491 KINN 494 (543)
Q Consensus 491 ~l~~ 494 (543)
.|++
T Consensus 494 ilsy 497 (498)
T KOG4237|consen 494 ILSY 497 (498)
T ss_pred EEec
Confidence 8876
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.2e-15 Score=154.78 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=63.1
Q ss_pred CcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCC
Q 044382 394 PKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 473 (543)
Q Consensus 394 ~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 473 (543)
++|+.|++++ |.++ .+|....+|+.|++.++.... .....++|+.|++++|....+|.. +.+|+.|++++ +.+
T Consensus 362 ~~L~~L~Ls~-N~L~-~LP~l~~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqL 434 (788)
T PRK15387 362 SELYKLWAYN-NRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYR-NQL 434 (788)
T ss_pred cccceehhhc-cccc-cCcccccccceEEecCCcccC-CCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhcc-Ccc
Confidence 3456666666 4666 566555567777776653222 112246778888888776655543 45677888888 477
Q ss_pred cccCCCcCCCCCCccEEecccCCCCc
Q 044382 474 VFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 474 ~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
+.+|.. +..+++|+.|+++++ .++
T Consensus 435 t~LP~s-l~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 435 TRLPES-LIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred cccChH-HhhccCCCeEECCCC-CCC
Confidence 788766 667888888888884 454
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=9.3e-15 Score=152.27 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=44.9
Q ss_pred cccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCC
Q 044382 395 KLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTS 471 (543)
Q Consensus 395 ~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 471 (543)
+|+.|++++ |.++ .+|...++|+.|+++++.-.. ....+.+|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 383 ~L~~LdLs~-N~Lt-~LP~l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSG-NRLT-SLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecC-Cccc-CCCCcccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 345555554 3444 444444455555555543221 1112446777888888877788878888889999998864
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=129.54 Aligned_cols=147 Identities=24% Similarity=0.348 Sum_probs=117.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
+++++|.+++|.+..... +..+|..|.++++.+|++. ..|..+++++.|+.|++.-|.+..+|..|+.++
T Consensus 33 s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 567888888887754432 3344445555568888877 567788888899999988888888888888899
Q ss_pred cccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 128 YLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 128 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
-|++|||.+|++. .+|..+..++.|+.|++++| ..+.+|.+++++++||.|.+..|. +-++|.+++.++.|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 9999999888776 67888888888888888886 677788888999999999998888 7778888888888888865
Q ss_pred e
Q 044382 206 F 206 (543)
Q Consensus 206 ~ 206 (543)
.
T Consensus 181 q 181 (264)
T KOG0617|consen 181 Q 181 (264)
T ss_pred c
Confidence 4
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.5e-13 Score=144.11 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=51.5
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 184 (543)
+...|+++++.++.+|..+. +.|+.|++++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 45677777777777776552 467777777777777776554 46777777765 4555665433 35677777776
Q ss_pred CCcccccc
Q 044382 185 DSLEEMPL 192 (543)
Q Consensus 185 ~~~~~lp~ 192 (543)
. +..+|.
T Consensus 252 ~-L~~LP~ 258 (754)
T PRK15370 252 R-ITELPE 258 (754)
T ss_pred c-cCcCCh
Confidence 6 445543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=2.1e-15 Score=122.83 Aligned_cols=120 Identities=31% Similarity=0.385 Sum_probs=106.0
Q ss_pred ecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCC
Q 044382 80 PVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEG 159 (543)
Q Consensus 80 ~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 159 (543)
.+.++.|.++ ..+|.+..+.+|++|++++|+++++|.+++.+++|+.|++.-|.+..+|.+++.++.|+.||+++
T Consensus 37 rLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 37 RLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 3348999888 46778888999999999999999999999999999999999999999999999999999999998
Q ss_pred Cchh-hhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 160 CRRL-KKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 160 ~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
|..- ..+|..+..++.|+.|++++|. .+.+|..++++++|+.|.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 7433 4578778889999999999999 8889999999999998854
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.2e-13 Score=142.97 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=78.4
Q ss_pred ecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCC
Q 044382 80 PVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEG 159 (543)
Q Consensus 80 ~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 159 (543)
.+++.++.+.. +|..+++ .|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 182 ~L~L~~~~Lts-LP~~Ip~------~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 182 ELRLKILGLTT-IPACIPE------QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred EEEeCCCCcCc-CCccccc------CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34477777774 4544544 79999999999999988664 589999999999999988664 4799999999
Q ss_pred CchhhhhhHHHhhhcccceeecCCCCCcccccccc
Q 044382 160 CRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGI 194 (543)
Q Consensus 160 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l 194 (543)
| .+..+|..+. .+|+.|++++|. +..+|..+
T Consensus 251 N-~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l 281 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDLFHNK-ISCLPENL 281 (754)
T ss_pred C-ccCcCChhHh--CCCCEEECcCCc-cCcccccc
Confidence 8 5668887654 589999999888 66676543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.38 E-value=5.3e-13 Score=142.32 Aligned_cols=99 Identities=33% Similarity=0.448 Sum_probs=55.6
Q ss_pred eeeEEEecCCC--ccccCcc-ccCcccccEEecCCC-CccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 105 RLRVFSLRGYH--IYELPDS-IGDLRYLRYLNLSGT-VIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 105 ~L~~L~Ls~~~--l~~lp~~-~~~l~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.|++|-+.+|. +..++.. |..++.|++|||++| .+.++|.+++.|.+||+|++++ +.+..+|.++++|.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 56666665554 4444333 455666666666655 3446666666666666666666 35556666666666666666
Q ss_pred cCCCCCcccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+..+.....+|.....+.+||.|.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cccccccccccchhhhcccccEEE
Confidence 665553444433344455555553
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.7e-12 Score=126.19 Aligned_cols=284 Identities=20% Similarity=0.138 Sum_probs=139.9
Q ss_pred EEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-------cCccccC
Q 044382 53 LSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-------LPDSIGD 125 (543)
Q Consensus 53 L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-------lp~~~~~ 125 (543)
|++..+.+........+..+..++.|. +.++.+...-...++..+...+.+++|+++++.+.. ++..+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~---l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLR---LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEe---ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 444444443222223334444444443 666655432122334444456667777777766542 2334556
Q ss_pred cccccEEecCCCCcc-ccchhhhcccc---cceeecCCCchh----hhhhHHHhhh-cccceeecCCCCCccc----ccc
Q 044382 126 LRYLRYLNLSGTVIR-TLPESVNKLYN---LHTLLLEGCRRL----KKLCADMGNL-IKLHHLNDSNTDSLEE----MPL 192 (543)
Q Consensus 126 l~~L~~L~L~~~~i~-~lp~~~~~l~~---L~~L~l~~~~~~----~~l~~~~~~l-~~L~~L~l~~~~~~~~----lp~ 192 (543)
+++|++|++++|.+. ..+..+..+.+ |++|++++|... ..+...+..+ ++|+.|++++|.+... ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 677777777777665 33444544544 777777776432 1222334455 6777777777773321 222
Q ss_pred ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 193 GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 193 ~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
.+..+++|++|++..+... ..........+...++|++|++++|..+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~--------------------------~~~~~~l~~~l~~~~~L~~L~L~~n~i~------- 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIG--------------------------DAGIRALAEGLKANCNLEVLDLNNNGLT------- 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCc--------------------------hHHHHHHHHHHHhCCCCCEEeccCCccC-------
Confidence 2333444554432211100 0000111112334467777777666542
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCCCC-----CCCCCCCCCCCccEEEeecCCCCC----CCC-CCCCCCccceeee
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGTKF-----PTWLGDSSFLNLVTLKFEDCGMCT----ALP-SVGQLPSLKHLTV 342 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l 342 (543)
..........+..+++|+.|+++++..... ...+.. ..+.|++|++.+|.... .+. .+..+++|+++++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 111122334455667778888777654321 011111 24678888888875532 111 3445578888888
Q ss_pred cCccceeeeCccccCCCCCCCC-CCcCeeeccCc
Q 044382 343 RGMSRVNRLGSKFYGDDSPIPF-PCLETLRFEDL 375 (543)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 375 (543)
++|. ++..+..-... ....+ ++|+++++.+.
T Consensus 286 ~~N~-l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 286 RGNK-FGEEGAQLLAE-SLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCC-CcHHHHHHHHH-HHhhcCCchhhcccCCC
Confidence 8874 22211100000 02234 67777777653
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=7.1e-13 Score=128.94 Aligned_cols=282 Identities=21% Similarity=0.158 Sum_probs=169.3
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcc-----ccCccccCcccccEEecCCCCccc-------cchhhhcc
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGTVIRT-------LPESVNKL 149 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~l 149 (543)
++.++.+.+. .+...+..+.+|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+
T Consensus 4 ~L~~~~l~~~---~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 4 SLKGELLKTE---RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccCccccc---chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4566666542 33333337888999999999974 355566788889999999886652 34566778
Q ss_pred cccceeecCCCchhhhhhHHHhhhcc---cceeecCCCCCccc----cccccccc-cccccccceEecCCCCCChhhhcc
Q 044382 150 YNLHTLLLEGCRRLKKLCADMGNLIK---LHHLNDSNTDSLEE----MPLGIGKL-TCLQTLCNFVVGKDSGSGLRELKS 221 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~~----lp~~l~~l-~~L~~L~~~~~~~~~~~~~~~l~~ 221 (543)
++|+.|++++|......+..+..+.+ |++|++++|..... +...+..+ ++|+.|++..+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~------------ 148 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR------------ 148 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc------------
Confidence 89999999998655555555666665 99999999883311 12223334 455555332221
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK 301 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 301 (543)
............+..+++|++|+++++..++ .........+...++|++|+++++.+..
T Consensus 149 --------------l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 149 --------------LEGASCEALAKALRANRDLKELNLANNGIGD-------AGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred --------------CCchHHHHHHHHHHhCCCcCEEECcCCCCch-------HHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 1111111222336667889999998876521 1112233445566899999999987542
Q ss_pred C-----CCCCCCCCCCCccEEEeecCCCCC-CCCCC-----CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCee
Q 044382 302 F-----PTWLGDSSFLNLVTLKFEDCGMCT-ALPSV-----GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETL 370 (543)
Q Consensus 302 ~-----~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L 370 (543)
. ...+. .+++|++|++++|...+ .+..+ ...+.|++|++++|. ++..+...... ....+++|+++
T Consensus 208 ~~~~~l~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~-~~~~~~~L~~l 283 (319)
T cd00116 208 EGASALAETLA--SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE-VLAEKESLLEL 283 (319)
T ss_pred HHHHHHHHHhc--ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH-HHhcCCCccEE
Confidence 2 22232 37899999999986543 11111 124799999999984 33211110000 02346899999
Q ss_pred eccCcccccccccCCCCCCCCCC-CcccEEeeccC
Q 044382 371 RFEDLQEWEEWIPHGSSQGVERF-PKLRELHILRC 404 (543)
Q Consensus 371 ~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c 404 (543)
++.++. +.........+....+ +.|+.+++.+.
T Consensus 284 ~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 284 DLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 999854 3322111111112344 68888888773
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.4e-10 Score=99.31 Aligned_cols=124 Identities=26% Similarity=0.310 Sum_probs=43.7
Q ss_pred CCCceEEeecccCCCccccccccccccccc-cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-hcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l 149 (543)
+.+...+..+++++|.+.. ...++ .+.+|++|++++|.++.+. .+..+++|++|++++|.++++++.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccccc------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhC
Confidence 3333334444577777664 12233 4667888888888877764 4677888888888888888776555 357
Q ss_pred cccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCcccccc----cccccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLC 204 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~ 204 (543)
++|+.|++++| .+..+. ..+..+++|+.|++.+|. +...+. .+..+++|+.|+
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 88888888876 443332 235677888888888887 444332 255677777775
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.7e-10 Score=96.02 Aligned_cols=125 Identities=25% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l 126 (543)
.++++|++.+|.+..++.++. .+.+|++| ++++|.+.. ...+..++.|++|++++|.++.+++.+ ..+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~--~l~~L~~L---~Ls~N~I~~------l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGA--TLDKLEVL---DLSNNQITK------LEGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp -----------------S--T--T-TT--EE---E-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccccchhh--hhcCCCEE---ECCCCCCcc------ccCccChhhhhhcccCCCCCCccccchHHhC
Confidence 357999999999866544221 24455555 699999986 234558999999999999999987655 469
Q ss_pred ccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhh----HHHhhhcccceeecCCC
Q 044382 127 RYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLC----ADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~ 184 (543)
++|++|++++|.|.++ -..+..+++|++|++.+|. +...+ ..+..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999999988865 3567889999999999984 33222 34779999999987543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-10 Score=107.45 Aligned_cols=197 Identities=18% Similarity=0.219 Sum_probs=92.8
Q ss_pred CCCCccEEEeecCCCCCCCC---CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC
Q 044382 310 SFLNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS 386 (543)
Q Consensus 310 ~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 386 (543)
.+.+|+.+.+.++.. ...+ ....||+++.|++++|- +..+.... .....+|+|+.|+++.+....-+ ....
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~---~i~eqLp~Le~LNls~Nrl~~~~-~s~~ 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVL---KIAEQLPSLENLNLSSNRLSNFI-SSNT 192 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhh-HHhHHHHH---HHHHhcccchhcccccccccCCc-cccc
Confidence 366777777766533 2222 34567777777776652 11111000 00244666666666653221111 1111
Q ss_pred CCCCCCCCcccEEeeccCcCcc----CCCCCCCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeee--cccC
Q 044382 387 SQGVERFPKLRELHILRCSKLQ----GTFPEHLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWR--SATD 457 (543)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~----~~lp~~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~ 457 (543)
...++.|+.|.|+.| +++ +.+-..+|+|+.|.+..+..+.. ....+..|+.|+|++|+..+.+ ....
T Consensus 193 ---~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 193 ---TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred ---hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 234566666666666 332 11223456666666655532211 1111555666666666655543 3445
Q ss_pred CCCCCceEEEcCCCCCcccCCC------cCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 458 HLGSQNSVVCRDTSNQVFLSGP------LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
.++.|+.|.++.| .+.++... ....+++|+.|++.. +++..++. -..+..+++|+.|.+
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s--l~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS--LNHLRTLENLKHLRI 333 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccc--cchhhccchhhhhhc
Confidence 5666666666663 44443211 123456666666666 34443321 113333455555544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.1e-10 Score=99.98 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
.-|+.++.+++++|.+..+.. .+.-.++++.|. ++.|.+.. ...+..+++|..||||+|.++.+-.+-.
T Consensus 281 dTWq~LtelDLS~N~I~~iDE--SvKL~Pkir~L~---lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDE--SVKLAPKLRRLI---LSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred chHhhhhhccccccchhhhhh--hhhhccceeEEe---ccccceee------ehhhhhcccceEeecccchhHhhhhhHh
Confidence 456667777777776654432 222234555443 66666553 2234466677777777776665544445
Q ss_pred CcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCccccc
Q 044382 125 DLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMP 191 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp 191 (543)
.+-+.++|.|++|.+..+ .+++++.+|..||+++| .++.+. ..||++|.|+++.+.+|. +..+|
T Consensus 350 KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhcCEeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 666677777777766665 45666777777777765 344443 336677777777777666 44443
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=4.2e-11 Score=111.66 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=93.2
Q ss_pred CcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCC----CCCCCCCccEEEEecccCccc-----ccCCC
Q 044382 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGT----FPEHLPALEMLVIVECNELSI-----SIASL 436 (543)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----lp~~l~~L~~L~l~~~~~l~~-----~~~~~ 436 (543)
-+.++++..|..+++.....+ ...+..|+.|+.++|..++.. +-+..++|+.|.+..|..... .-...
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i---~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLI---ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred HhhccchhhhccccchHHHHH---hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 344444444444444332222 234556666666666554411 113456666666666654431 12236
Q ss_pred CccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCC----CcCCCCCCccEEecccCCCCccccccCcccc
Q 044382 437 PALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSG----PLKPRIPKLEELKINNIQNETCIWKSHNELL 509 (543)
Q Consensus 437 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 509 (543)
+.|+.+++.+|...+ +.....+++.|++|.+++|..+++... ..-..+..|+.+.+.+|+.++.-. -+.+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l 422 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHL 422 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHH
Confidence 667777777665533 334445677777777777766665411 112345667777777777776543 1245
Q ss_pred ccCCccceEeeccCCCCcccchhhhHHH
Q 044382 510 QDICSLKRLLITSCPKLQSLVAEEEKDQ 537 (543)
Q Consensus 510 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 537 (543)
..+++|+.+++.+|..+++-+.....-.
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhh
Confidence 5567777788777777776555444433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-09 Score=103.18 Aligned_cols=158 Identities=21% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccc-cccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGY-LACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~-~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
.-.+++|.+++.+........=+....+++++.|. ++.|-+... .--.+.. .+++|+.|+|+.|.+....++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~Ld---LS~NL~~nw~~v~~i~e---qLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLD---LSRNLFHNWFPVLKIAE---QLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeec---chhhhHHhHHHHHHHHH---hcccchhcccccccccCCcccc
Confidence 34467888888876543222103445677888775 888877642 1123333 889999999999987644332
Q ss_pred -ccCcccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc--ccccc
Q 044382 123 -IGDLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL--GIGKL 197 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~~l 197 (543)
-..+.+|+.|.|+.|+++ ++-.....+|+|+.|++.+|..+..-.....-+..|++||+++|. +...+. .++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence 247889999999999887 344445678999999998875332222224467788999999998 555553 36778
Q ss_pred cccccccceEec
Q 044382 198 TCLQTLCNFVVG 209 (543)
Q Consensus 198 ~~L~~L~~~~~~ 209 (543)
+.|+.|.+..++
T Consensus 271 ~~L~~Lnls~tg 282 (505)
T KOG3207|consen 271 PGLNQLNLSSTG 282 (505)
T ss_pred cchhhhhccccC
Confidence 888888655444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=8.8e-09 Score=103.18 Aligned_cols=102 Identities=31% Similarity=0.422 Sum_probs=84.2
Q ss_pred cCCeeeEEEecCCCccccCccccCcc-cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLR-YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.+..++.|++.+|.+..++.....+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 55788999999999988888777774 899999999999988888889999999999987 6788887666888999999
Q ss_pred cCCCCCccccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
+++|. +..+|..++....|+++..
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhh
Confidence 99998 8888876666666776643
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=5.9e-10 Score=108.08 Aligned_cols=135 Identities=23% Similarity=0.355 Sum_probs=81.1
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLR 127 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~ 127 (543)
.+....+++.|++.... .++..|..|..+. +..|.+. .++.++.++..|++|+|+.|++..+|..++.|
T Consensus 75 tdt~~aDlsrNR~~elp--~~~~~f~~Le~li---Ly~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l- 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELP--EEACAFVSLESLI---LYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL- 143 (722)
T ss_pred cchhhhhccccccccCc--hHHHHHHHHHHHH---HHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcC-
Confidence 44555666666664332 2222233344343 5555544 34556666677777777777766666655433
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccc
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIG 195 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 195 (543)
-|++|-+++|.++.+|+.++.+..|..||.+.| .+..+|..++.+.+|+.|++..|. ...+|+++.
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~ 209 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC 209 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh
Confidence 366777777777777766666666777777665 566666666667777777776666 555665554
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=1.7e-10 Score=107.63 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=142.9
Q ss_pred CCcEEEEeccCCCCCCCC-CCCCCCCCccEEEeecCCCCCCCC---CCCCCCccceeeecCccceeeeCccccCCCCCCC
Q 044382 288 NLEQFGICGYGGTKFPTW-LGDSSFLNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIP 363 (543)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 363 (543)
-|+.|++.+......... .....+|++++|.+.+|..+++-. .-..|++|+++++..|..++....+..+ ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----EG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----Hh
Confidence 466777776654322111 111246777777777776555433 2245777777777777777665544322 45
Q ss_pred CCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC----CCCCCCCCccEEEEecccCcccc-----cC
Q 044382 364 FPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG----TFPEHLPALEMLVIVECNELSIS-----IA 434 (543)
Q Consensus 364 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~lp~~l~~L~~L~l~~~~~l~~~-----~~ 434 (543)
+++|++++++.|+.+........ ...+..++.+.+.+|..+.. ....+.+.+.++++.+|..++.. -.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 77777777777776655322222 34555667776667644331 11234555666666677655532 12
Q ss_pred CCCccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCCCcC-CCCCCccEEecccCCCCccccccCccccc
Q 044382 435 SLPALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSGPLK-PRIPKLEELKINNIQNETCIWKSHNELLQ 510 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~l~ 510 (543)
.+..|+.|..++|...+ +...-.+.++|+.|.+.+|..+++.....+ .+.+.|+.+++.+|-..+.-.. ..--.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL--~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL--ASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH--hhhcc
Confidence 27778888888887754 233345678889999998887777654333 5778899999888866553311 11234
Q ss_pred cCCccceEeeccCCCCccc
Q 044382 511 DICSLKRLLITSCPKLQSL 529 (543)
Q Consensus 511 ~l~~L~~L~l~~c~~l~~~ 529 (543)
+++.||.+.++.|..++.-
T Consensus 370 ~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE 388 (483)
T ss_pred CCchhccCChhhhhhhhhh
Confidence 4789999999998777664
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=6e-09 Score=93.27 Aligned_cols=100 Identities=28% Similarity=0.273 Sum_probs=51.1
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
-++.|+.||||+|.|+.+.+++.-.+.+++|+++.|.+..+. .+..+++|+.||+++| .+..+...-.++.|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 455666666666666655555555566666666666655542 2555666666666654 23333222224445555555
Q ss_pred CCCCCccccccccccccccccccc
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
.+|. ++.+ .++.++-+|..|+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccc
Confidence 5544 3333 23444444444433
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3.7e-08 Score=69.11 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=45.1
Q ss_pred CeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCc
Q 044382 104 QRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~ 161 (543)
++|++|++++|.++.+|. .|.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888887764 5788888888888888888774 467788888888888763
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=4.6e-08 Score=97.99 Aligned_cols=123 Identities=28% Similarity=0.409 Sum_probs=99.0
Q ss_pred cCCCceEEeecccCCCccccccccccccccccCC-eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcc
Q 044382 71 DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKL 149 (543)
Q Consensus 71 ~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l 149 (543)
.++.+..| ++..|.+. .+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|.+.++|...+.+
T Consensus 114 ~~~~l~~L---~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 114 ELTNLTSL---DLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cccceeEE---ecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 33445555 58888777 3445445664 999999999999999888999999999999999999999888899
Q ss_pred cccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTL 203 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 203 (543)
++|+.|++++| .+..+|..+..+..|++|.+++|. +...+..+.+++++..+
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 99999999997 788899877778889999999997 44455556566555555
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=7e-08 Score=101.37 Aligned_cols=92 Identities=26% Similarity=0.359 Sum_probs=78.0
Q ss_pred eeeEEEecCCCcc-ccCccccCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIY-ELPDSIGDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899998877 56888889999999999999887 678888999999999999987667888888899999999999
Q ss_pred CCCCcccccccccc
Q 044382 183 NTDSLEEMPLGIGK 196 (543)
Q Consensus 183 ~~~~~~~lp~~l~~ 196 (543)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99877788877664
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=8.5e-08 Score=67.28 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 460 GSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 460 ~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
|+|++|++++| .++.++...|+.+++|++|++++ +.++.++ +..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~---~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIP---PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEE---TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccC---HHHHcCCCCCCEEeCcCCc
Confidence 56788888885 88888887788888888888887 5788886 5578888888888888874
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=1.8e-08 Score=92.43 Aligned_cols=206 Identities=19% Similarity=0.160 Sum_probs=109.6
Q ss_pred cccccccCCeeeEEEecCCCcc-----ccCccccCcccccEEecCCC----Cccccchhh-------hcccccceeecCC
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGT----VIRTLPESV-------NKLYNLHTLLLEG 159 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~~~~l~~L~~L~L~~~----~i~~lp~~~-------~~l~~L~~L~l~~ 159 (543)
..+.+..+..++.++|++|.++ .+...+.+.++|+.-++++- ...++|+.+ -.+++|++||+++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3445557788888899998876 23445677778888888764 222455443 3566888888888
Q ss_pred Cchhhhhh----HHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 160 CRRLKKLC----ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 160 ~~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
|..-...+ .-+..+..|++|.+.+|. ++.... .+++ .|.+|.. ....++-..|| .+....-
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~----------~kk~~~~~~Lr-v~i~~rN 167 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAV----------NKKAASKPKLR-VFICGRN 167 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHH----------HhccCCCcceE-EEEeecc
Confidence 75433222 335577888888888888 443221 1221 1222210 00111112233 2222221
Q ss_pred cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-----CCCCCC
Q 044382 235 ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-----TWLGDS 309 (543)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~ 309 (543)
.............|..++.|+.+.+..|++. .....-....+..+++|+.|++.+|.++.-. .-+ +
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~-------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~ 238 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIR-------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--S 238 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEeccccc-------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--c
Confidence 1122222233334666677888877776651 1111233455666777777777777643211 111 1
Q ss_pred CCCCccEEEeecCCC
Q 044382 310 SFLNLVTLKFEDCGM 324 (543)
Q Consensus 310 ~l~~L~~L~l~~~~~ 324 (543)
.++.|+.|++++|..
T Consensus 239 s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLL 253 (382)
T ss_pred ccchheeeccccccc
Confidence 245666666666644
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=2.2e-08 Score=97.41 Aligned_cols=148 Identities=25% Similarity=0.283 Sum_probs=120.2
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYL 129 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L 129 (543)
+..+.+..|.+..+.. ...+|..|.+++++.|+++ ..|..++.+ -|++|.+++|+++.+|+.++.+..|
T Consensus 100 Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-----~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-----HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred HHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-----cCChhhhcC-cceeEEEecCccccCCcccccchhH
Confidence 4445556666544332 2457788888899999998 455555566 5899999999999999999999999
Q ss_pred cEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEec
Q 044382 130 RYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 209 (543)
..||.+.|.+..+|..++.+..|+.|.++.| .+..+|.++..| .|..||++.|+ +..+|-.|.+|+.|+.|.+..+.
T Consensus 169 ~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 169 AHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 9999999999999999999999999999996 677888888844 78889999999 99999999999999998654444
Q ss_pred CC
Q 044382 210 KD 211 (543)
Q Consensus 210 ~~ 211 (543)
..
T Consensus 246 Lq 247 (722)
T KOG0532|consen 246 LQ 247 (722)
T ss_pred CC
Confidence 33
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=2e-07 Score=98.03 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=40.3
Q ss_pred ccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 129 LRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
++.|+|++|.+. .+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 445555555554 34555555555555555555433445544555555555555555544445555555555555543
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.1e-07 Score=87.28 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccc-------cccccccCCeeeEEEecCCCcc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACS-------ILPKLFKLQRLRVFSLRGYHIY 117 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~-------~~~~~~~l~~L~~L~Ls~~~l~ 117 (543)
....++.+++++|.+..... .+.. .+...+.|+..++++- +.|+.-.. +.+++-.+++|++|+||.|.++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34668999999998865543 2221 2333344444445432 23332222 2345557789999999999876
Q ss_pred --ccC---ccccCcccccEEecCCCCccccch-h-------------hhcccccceeecCCCchh----hhhhHHHhhhc
Q 044382 118 --ELP---DSIGDLRYLRYLNLSGTVIRTLPE-S-------------VNKLYNLHTLLLEGCRRL----KKLCADMGNLI 174 (543)
Q Consensus 118 --~lp---~~~~~l~~L~~L~L~~~~i~~lp~-~-------------~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~ 174 (543)
.++ +-+.++..|+.|.|.+|++..... . +.+-++|+++..++|+.- ..+...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 222 235779999999999997764311 1 223457888888876432 22223355667
Q ss_pred ccceeecCCCCCccc-----cccccccccccccccce
Q 044382 175 KLHHLNDSNTDSLEE-----MPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 175 ~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~~~ 206 (543)
.|+.+.+..|. +.. +...+..+++|+.|++.
T Consensus 186 ~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 186 TLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred ccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecc
Confidence 88888887777 332 12335667777777543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=6.6e-07 Score=57.31 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=27.7
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccc
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP 143 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp 143 (543)
++|++|++++|+++.+|..+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777777654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.3e-07 Score=94.93 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=67.6
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..+..|+.|++.+|.|..+...+..+.+|++|++++|.|+++ ..+..++.|+.|++.+| .+..+.. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhc
Confidence 34567777777777777777655466777777777777777776 34566667777777776 4544433 555777777
Q ss_pred eecCCCCCccccccc-cccccccccccc
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTLCN 205 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L~~ 205 (543)
+++++|. +..+... +..+.+++.+.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 7777777 5544332 355556665543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.2e-08 Score=86.47 Aligned_cols=154 Identities=22% Similarity=0.134 Sum_probs=105.9
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCC-ccccC--cccc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYH-IYELP--DSIG 124 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp--~~~~ 124 (543)
..+++|+++...++.-....-++.+++|+.| .+.++++.. .+...+.+-.+|+.|+++.|. ++... --+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~l---SlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNL---SLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhc---cccccccCc----HHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 4588999999877554444445566666665 488888876 666777788999999999987 77442 2368
Q ss_pred CcccccEEecCCCCcc-ccch-hh-hcccccceeecCCCchh---hhhhHHHhhhcccceeecCCCCCccc-cccccccc
Q 044382 125 DLRYLRYLNLSGTVIR-TLPE-SV-NKLYNLHTLLLEGCRRL---KKLCADMGNLIKLHHLNDSNTDSLEE-MPLGIGKL 197 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~-~lp~-~~-~~l~~L~~L~l~~~~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~l~~l 197 (543)
+|+.|..|+|++|.+. +... .+ .--++|..|++++++.- ..+..-..++++|.+||+++|..++. ....+-++
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 9999999999999665 2211 11 22467888899887542 33333356899999999999875554 22345667
Q ss_pred cccccccceEe
Q 044382 198 TCLQTLCNFVV 208 (543)
Q Consensus 198 ~~L~~L~~~~~ 208 (543)
+.|++|++..+
T Consensus 338 ~~L~~lSlsRC 348 (419)
T KOG2120|consen 338 NYLQHLSLSRC 348 (419)
T ss_pred chheeeehhhh
Confidence 77777754433
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.2e-07 Score=85.03 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCC--CCCCCCCCCccceeeecCc
Q 044382 284 KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT--ALPSVGQLPSLKHLTVRGM 345 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~ 345 (543)
..+++|..|+++++...+-..+.....++.|++|.++.|..+. .+-.+...|.|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4566777777766542221111111136677777777776543 2224567777888877766
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=2e-05 Score=76.24 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=36.9
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccce
Q 044382 281 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRV 348 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 348 (543)
..+..+.+++.|.++++....+|. + .++|++|.+.+|.....+|.. -.++|++|++++|..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV-L----PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEI 107 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC-C----CCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccc
Confidence 334455777788888776666652 1 335777777777665555521 1246666666666433
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.7e-07 Score=74.30 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccc-cCCeeeEEEecCCCccccCccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
.....++++.+.+..+. +..+.+.+...|...++++|.+.. ||+.|. .++.++.|++++|.++++|..+..+
T Consensus 27 kE~h~ldLssc~lm~i~--davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIA--DAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDVPEELAAM 99 (177)
T ss_pred HHhhhcccccchhhHHH--HHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhchHHHhhh
Confidence 44556666666543222 444556666666666777777773 333332 4557777777777777777777777
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHH
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCAD 169 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~ 169 (543)
+.|+.|+++.|.+...|..+..|.+|-+||..+| ....+|.+
T Consensus 100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 7788888877777777777777777777777765 34445543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=4.7e-06 Score=53.39 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=26.3
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhh
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKL 166 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 166 (543)
++|++|++++|.++++|+.+++|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4677777777777777776777777777777776 34443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=5.6e-07 Score=90.34 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=96.6
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~ 122 (543)
..-.|.++...+++.|...... .. +.-+..|..++++.|.+.. ...+..+++|++|||++|.+..+|.-
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD--~S---Lqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l 227 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMD--ES---LQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQL 227 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHH--HH---HHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhcccccc
Confidence 3456788889999998774333 22 3334445555699998886 22555899999999999999988752
Q ss_pred -ccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh--HHHhhhcccceeecCCCC
Q 044382 123 -IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~ 185 (543)
-..++ |+.|.+++|.++.+ -++.+|.+|+.||+++|- +.... ..++.|..|..|.+.||.
T Consensus 228 ~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 33455 99999999999988 568899999999999973 32221 227788999999999998
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=4.3e-06 Score=87.82 Aligned_cols=137 Identities=19% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCCceEEEeeccccCCccchhhh-hcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDL-YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~ 124 (543)
...++++|++.+...-...-.... .-+|.|++|.+-+.+ +. .+.|..-..++++|+.||+|+++++.+ .+++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~---~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ---FD---NDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce---ec---chhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 347799999988654222111222 357889999854333 22 123444445999999999999999888 6789
Q ss_pred CcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhh--hh----HHHhhhcccceeecCCCCCccc
Q 044382 125 DLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKK--LC----ADMGNLIKLHHLNDSNTDSLEE 189 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~--l~----~~~~~l~~L~~L~l~~~~~~~~ 189 (543)
++++|++|.+.+-.+..- -..+..|++|+.||+|....... +. .--..||+|+.||.+++.....
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999999999988776632 24678999999999997432211 11 1122589999999998884443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=1.3e-06 Score=69.37 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=83.9
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcccc-CcccccEEecCCCCccccchhhhccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIG-DLRYLRYLNLSGTVIRTLPESVNKLYNL 152 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L 152 (543)
.-..+..++++..++- +++ +....+....+|+..+|++|.+..+|..|. ..+...+|++++|.+.++|..+..++.|
T Consensus 25 dakE~h~ldLssc~lm-~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLM-YIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHHHhhhcccccchhh-HHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 3333444455554443 233 333445566788888999999998888774 5568899999999999999889999999
Q ss_pred ceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc
Q 044382 153 HTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 153 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~ 192 (543)
+.|+++.| .+...|..+..|.+|-.|+..+|. +..+|-
T Consensus 103 r~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 103 RSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred hhcccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 99999987 566667777778888888888887 555553
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=1.3e-06 Score=87.68 Aligned_cols=103 Identities=25% Similarity=0.317 Sum_probs=82.0
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+..+..+.+..|.+..+-..+..+.+|.+|++.+|.+..+...+..+++|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 55677777788888887555688899999999999999998666889999999999997 6777654 788889999999
Q ss_pred CCCCCccccccccccccccccccceEe
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
.+|. +..+. ++..++.|+.+++.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYN 172 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcc
Confidence 9999 66653 4555677777755444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=0.00015 Score=70.36 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=6.2
Q ss_pred Cccccceeeeeee
Q 044382 250 GKKNLKELSLNWT 262 (543)
Q Consensus 250 ~~~~L~~L~l~~~ 262 (543)
.+.+++.|+++.+
T Consensus 50 ~~~~l~~L~Is~c 62 (426)
T PRK15386 50 EARASGRLYIKDC 62 (426)
T ss_pred HhcCCCEEEeCCC
Confidence 3445555555443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=6.6e-07 Score=89.84 Aligned_cols=148 Identities=23% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccc---cc---cccccccccCCeeeEEEecCCCcccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGY---LA---CSILPKLFKLQRLRVFSLRGYHIYEL 119 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~---~~---~~~~~~~~~l~~L~~L~Ls~~~l~~l 119 (543)
-+..+|+|.+.++++....-+..+ ...|++|++.+ .+... +. ..+..+ ..+..|.+-+.++|.++.+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~----Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHN----SLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhc----cHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHHhH
Confidence 457899999999877543322222 23455554211 11100 00 000000 0123344444444444444
Q ss_pred CccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCcccccccccccc
Q 044382 120 PDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 120 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
-.++.-++.|+.|||++|.+++. +.+..|++|++||+++| .+..+|.. ...+. |+.|.+++|. ++.+ .++.+++
T Consensus 180 D~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhh-hhHHhhh
Confidence 44444445555555555554443 24445555555555554 33333321 11222 4555555544 3333 3344444
Q ss_pred ccccccc
Q 044382 199 CLQTLCN 205 (543)
Q Consensus 199 ~L~~L~~ 205 (543)
+|+.|++
T Consensus 255 sL~~LDl 261 (1096)
T KOG1859|consen 255 SLYGLDL 261 (1096)
T ss_pred hhhccch
Confidence 4444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=8.6e-06 Score=72.48 Aligned_cols=208 Identities=20% Similarity=0.154 Sum_probs=110.6
Q ss_pred ccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCcc----ccc-------hhhhcccccceeecCCC
Q 044382 97 LPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIR----TLP-------ESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 97 ~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp-------~~~~~l~~L~~L~l~~~ 160 (543)
+..+..+..+..++||+|.|+. +...+.+-.+|++-+++.-... ++| ..+-+|++|+.++++.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3344456777888888887762 3344566777777777654111 233 34457888999999888
Q ss_pred chhhhhhH----HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceeccccc
Q 044382 161 RRLKKLCA----DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLE 235 (543)
Q Consensus 161 ~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~ 235 (543)
..-...|. -+++-+.|.+|.+++|. ++.+.. .+++ .|.+|.. . ....+-+.++ .+....-.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk--al~~la~--n--------KKaa~kp~Le-~vicgrNR 168 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK--ALFHLAY--N--------KKAADKPKLE-VVICGRNR 168 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH--HHHHHHH--H--------hhhccCCCce-EEEeccch
Confidence 65444443 35677889999999888 554432 2331 2333310 0 0001111222 11111111
Q ss_pred CcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCC-C--CCCCC
Q 044382 236 NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWL-G--DSSFL 312 (543)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~--~~~l~ 312 (543)
..+.........+.....|+.+.+..|++- -.-........+..+.+|+.|++.+|.++.....+ . -+..+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIr------pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIR------PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcC------cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 111122222333555678888888887761 11112233445667788888888887654321110 0 01134
Q ss_pred CccEEEeecCCC
Q 044382 313 NLVTLKFEDCGM 324 (543)
Q Consensus 313 ~L~~L~l~~~~~ 324 (543)
.|+.|.+.+|-.
T Consensus 243 ~lrEL~lnDCll 254 (388)
T COG5238 243 LLRELRLNDCLL 254 (388)
T ss_pred hhhhccccchhh
Confidence 567777777744
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=6.4e-05 Score=64.16 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=57.9
Q ss_pred EeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCcccccEEecCCCCccccc--hhhhcccccce
Q 044382 78 FLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHT 154 (543)
Q Consensus 78 L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~ 154 (543)
....|+++|++... .-+| +++.|.+|.+.+|.|+.+...+ .-+++|++|.|.+|++.++. ..+..+++|++
T Consensus 44 ~d~iDLtdNdl~~l---~~lp---~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL---DNLP---HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhc---ccCC---CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 33445666665531 2233 6677777777777777664444 34556777777777666542 33556677777
Q ss_pred eecCCCchhhhhh----HHHhhhcccceeecCCCC
Q 044382 155 LLLEGCRRLKKLC----ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 155 L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~ 185 (543)
|.+-+| .+..-. -.+.++++|++||.....
T Consensus 118 Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 776665 222222 125567777777776544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=7.8e-05 Score=63.65 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=77.7
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-hcccccceeecCCCchhhhhhH--HHhhhcccceee
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-NKLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLN 180 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~ 180 (543)
.+...+||++|.+..++. |..++.|.+|.+.+|.|+.+-+.+ ..+++|..|.+.+| .+.++.+ .+..+++|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 477789999999887744 778999999999999999995544 46788999999997 5555542 367899999999
Q ss_pred cCCCCCcccccc----ccccccccccccce
Q 044382 181 DSNTDSLEEMPL----GIGKLTCLQTLCNF 206 (543)
Q Consensus 181 l~~~~~~~~lp~----~l~~l~~L~~L~~~ 206 (543)
+-+|. +..-.. .+.++++|+.|+..
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 99998 554432 26678888888643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.9e-05 Score=80.03 Aligned_cols=103 Identities=26% Similarity=0.384 Sum_probs=61.3
Q ss_pred CcccccEEecCCCCcc--ccchhhh-cccccceeecCCCchh--hhhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR--TLPESVN-KLYNLHTLLLEGCRRL--KKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~--~lp~~~~-~l~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
.-.+|++|++++...- .-|..++ .||.|+.|.+++ ..+ +++..-...+++|..||++++. +..+ .+++++++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhcccc
Confidence 3467888888775322 2233443 578888888876 222 2233335578888888888888 6666 67888888
Q ss_pred cccccceEecCCCCCChhhhccccccccceec
Q 044382 200 LQTLCNFVVGKDSGSGLRELKSLIHLQGTLKI 231 (543)
Q Consensus 200 L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~ 231 (543)
|+.|.+..........+..+-+|++|+ .|++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~-vLDI 227 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLR-VLDI 227 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCC-eeec
Confidence 888865444333333344444444444 3433
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=3.2e-06 Score=87.37 Aligned_cols=245 Identities=22% Similarity=0.244 Sum_probs=110.9
Q ss_pred CCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEecc-CC-CCCC--CCCCCCCCCCccEEEeecCCC
Q 044382 249 DGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGY-GG-TKFP--TWLGDSSFLNLVTLKFEDCGM 324 (543)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~-~~~~--~~~~~~~l~~L~~L~l~~~~~ 324 (543)
..++.|+.+.+...... ...........+++|+.|.++++ .. ...+ .......+++|+.|++.++..
T Consensus 185 ~~~~~L~~l~l~~~~~~---------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKI---------TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hhCchhhHhhhcccccC---------ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 34667777776544321 11113344455677777777652 11 1111 011112356677777776654
Q ss_pred CCCCC--CC-CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEee
Q 044382 325 CTALP--SV-GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHI 401 (543)
Q Consensus 325 ~~~~~--~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 401 (543)
+.+.. .+ ..|++|++|.+.+|..++..+....+ ..++.|++|+++.|..+.+...... ...+++|+.+.+
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKL 328 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccchHHHHHHH---HHhCcchhhhhh
Confidence 44332 22 23667777766666544433322221 3355566666665555432211111 123444444443
Q ss_pred ccCcCccCCCCCCCCCccEEEEecccCcc------cccCCCCccceEEEcCCCCeeeecccCCCCCCc-eEEEcCCCCCc
Q 044382 402 LRCSKLQGTFPEHLPALEMLVIVECNELS------ISIASLPALCKMEIGGCKKVVWRSATDHLGSQN-SVVCRDTSNQV 474 (543)
Q Consensus 402 ~~c~~l~~~lp~~l~~L~~L~l~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~ 474 (543)
..+.. .+.++.+.+..+.... .....++.++.+.|..+.. .... .+.+.+|+.++
T Consensus 329 ~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 329 LSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI----------SDLGLELSLRGCPNLT 390 (482)
T ss_pred hhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc----------cCcchHHHhcCCcccc
Confidence 33221 1122222222211111 1122244444444444331 1111 44556666552
Q ss_pred -ccCCCcCCCCCCccEEecccCCCCccccccCcccccc-CCccceEeeccCCCCcccch
Q 044382 475 -FLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD-ICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 475 -~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~-l~~L~~L~l~~c~~l~~~~~ 531 (543)
.+... ......++.|+++.|..++.-... .... +..++.+++.+|+.+.....
T Consensus 391 ~~l~~~-~~~~~~l~~L~l~~~~~~t~~~l~---~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLELR-LCRSDSLRVLNLSDCRLVTDKGLR---CLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHHH-hccCCccceEecccCccccccchH---HHhhhhhccccCCccCcccccchhh
Confidence 22211 222333788888888776654321 1222 56778888888877776543
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.49 E-value=4.8e-06 Score=86.03 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCceEEEcCCCCCcccCCCcCCCCCCcc-EEecccCCCCc-cccccCccccccCCccceEeeccCCCCcccc
Q 044382 461 SQNSVVCRDTSNQVFLSGPLKPRIPKLE-ELKINNIQNET-CIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 461 ~L~~L~l~~c~~l~~l~~~~~~~~~~L~-~L~l~~c~~l~-~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.+..+.+.+|+.++++.....+ ..... .+.+.+|+.++ .+ .........++.|+++.|...+.-.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l----~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESL----ELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHH----HHHhccCCccceEecccCccccccc
Confidence 5556666666666655433223 22322 57778888773 22 1122223448999999997666543
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0002 Score=64.85 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=37.1
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCccc-cCcccccEEecCCCCcc--ccchhhhcccccceeecC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI-GDLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLE 158 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~-~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~ 158 (543)
|+.+|.++.- ..++.-+.+|++|++|+++.|.+...-... .-+++|++|-|.+..+. ..-..+..++.++.|.++
T Consensus 77 DL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 77 DLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred hcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 4666655531 122222336666666666666544211111 23456666666655332 333444555555555555
Q ss_pred CC
Q 044382 159 GC 160 (543)
Q Consensus 159 ~~ 160 (543)
.|
T Consensus 155 ~N 156 (418)
T KOG2982|consen 155 DN 156 (418)
T ss_pred cc
Confidence 44
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=7e-05 Score=67.75 Aligned_cols=203 Identities=16% Similarity=0.149 Sum_probs=127.9
Q ss_pred CCCcEEEEeccCCCCCCCCC-CCCCCCCccEEEeecCCCCC--CCC-CCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWL-GDSSFLNLVTLKFEDCGMCT--ALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
..++.+.+.++.+.+..... .....+.++.+++.+|...+ ++. .+..+|.|+.|+|+.|+--..|... +.
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l------p~ 118 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL------PL 118 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC------cc
Confidence 34555556665544432221 11246789999999986543 333 5688999999999887533333221 13
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC------CCCCCCCCccEEEEecccCccc-----
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG------TFPEHLPALEMLVIVECNELSI----- 431 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------~lp~~l~~L~~L~l~~~~~l~~----- 431 (543)
...+|+.|-+.+. .+.-... ......+|.++.|.++. |++.. ...++-+.+++|+...|.....
T Consensus 119 p~~nl~~lVLNgT-~L~w~~~---~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT-GLSWTQS---TSSLDDLPKVTELHMSD-NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred cccceEEEEEcCC-CCChhhh---hhhhhcchhhhhhhhcc-chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 4668899888773 2221111 12256789999999988 44431 1123455788888888865431
Q ss_pred ccCCCCccceEEEcCCCCee--eecccCCCCCCceEEEcCCCCCcccC-CCcCCCCCCccEEecccCCCCccc
Q 044382 432 SIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLS-GPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
...-++++..+-+..|+..+ .......++.+.-|.++. ++++++. ...+..++.|+.|.+++.+-...+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 12238888888898887755 334555577777888888 4666554 233778899999988886654443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=3.4e-05 Score=69.07 Aligned_cols=58 Identities=31% Similarity=0.350 Sum_probs=34.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccc--hhhhcccccceeecCCC
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~ 160 (543)
+|+.|++|.||-|.|+.+. .+..|++|+.|+|..|.|..+- .-+.++++|+.|++..|
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 6666666666666666552 2556666666666666665542 23455666666666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=5.7e-05 Score=67.66 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=79.0
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhH--HHhhhccccee
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHL 179 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L 179 (543)
.+.+.+.|+..+|.+.++ +....++.|++|.|+-|.|+.+ +.+..|++|+.|+|+.| .+.++.. -+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 466788899999998876 3357899999999999999998 45889999999999987 4555543 25688999999
Q ss_pred ecCCCCCccccccc-----cccccccccccc
Q 044382 180 NDSNTDSLEEMPLG-----IGKLTCLQTLCN 205 (543)
Q Consensus 180 ~l~~~~~~~~lp~~-----l~~l~~L~~L~~ 205 (543)
-+..|..-+.-+.. +..+++|++|++
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99888766654432 556788888864
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00072 Score=60.47 Aligned_cols=90 Identities=29% Similarity=0.307 Sum_probs=57.7
Q ss_pred cCCeeeEEEecCCC--cc-ccCccccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhh--hh-hHHHhhh
Q 044382 102 KLQRLRVFSLRGYH--IY-ELPDSIGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLK--KL-CADMGNL 173 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~--l~-~lp~~~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~--~l-~~~~~~l 173 (543)
.+++|+.|.++.|. +. .++--...+++|++|++++|.+..+ -..+..+.+|..||+.+|.... .- ...+..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 67788888888884 32 3433344568888888888876643 1335677788888888774332 11 1235578
Q ss_pred cccceeecCCCCCcccccc
Q 044382 174 IKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 174 ~~L~~L~l~~~~~~~~lp~ 192 (543)
++|.+|+-.... -...|.
T Consensus 143 ~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 143 PSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred hhhccccccccC-Cccccc
Confidence 899988877666 444443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0013 Score=58.93 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=62.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCC--Ccc-ccchhhhcccccceeecCCCchhhhhh--HHHhhhccc
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGT--VIR-TLPESVNKLYNLHTLLLEGCRRLKKLC--ADMGNLIKL 176 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L 176 (543)
.+..|+.|++.+..++.+. .+-.+++|++|.++.| ++. .++.....+++|+++.+++|. +..+. ..+.++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 5556666666666655442 2456778888888888 444 555555666888888888873 33221 226677788
Q ss_pred ceeecCCCCCcccccc----ccccccccccccc
Q 044382 177 HHLNDSNTDSLEEMPL----GIGKLTCLQTLCN 205 (543)
Q Consensus 177 ~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~ 205 (543)
..|++..|. ...+-. .+.-+++|..|+-
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccc
Confidence 888888777 333321 1445677777753
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.31 E-value=0.0018 Score=34.35 Aligned_cols=17 Identities=47% Similarity=0.909 Sum_probs=7.6
Q ss_pred ccEEecCCCCccccchh
Q 044382 129 LRYLNLSGTVIRTLPES 145 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~ 145 (543)
|++||+++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0021 Score=34.09 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=17.9
Q ss_pred eeeEEEecCCCccccCccccCc
Q 044382 105 RLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
+|++|++++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999999888877653
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00079 Score=57.74 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=34.4
Q ss_pred CCCCceEEEcCCCCCcccCCCcC-CCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 459 LGSQNSVVCRDTSNQVFLSGPLK-PRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 459 ~~~L~~L~l~~c~~l~~l~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
+++++.|.+.+|..+.+..-+.+ +..++|+.|+|++|+++|+-... ++..+++|+.|.+.+.|.+..
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhhHHHHhcCchhhhc
Confidence 44555555555555554332211 23455666666666666655422 455556666666655554443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.0023 Score=54.92 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCccceEEEcCCCCee---eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 435 SLPALCKMEIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
.++.++.|.+.+|..+. +...-...++|+.|+|++|+.+++-....+..+++|+.|.+.+.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 35666677777776655 22222357999999999999999877767788999999999987766654
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.71 E-value=0.018 Score=28.24 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=4.2
Q ss_pred ccEEecCCCCccc
Q 044382 129 LRYLNLSGTVIRT 141 (543)
Q Consensus 129 L~~L~L~~~~i~~ 141 (543)
|++|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.28 E-value=0.027 Score=27.56 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=10.9
Q ss_pred CeeeEEEecCCCccccC
Q 044382 104 QRLRVFSLRGYHIYELP 120 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp 120 (543)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999988765
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.10 E-value=0.39 Score=39.09 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
..+++++.+.+.......-..++..+++|+++.+.. .+..++...+.++ +|+.+.+.. .++.++
T Consensus 55 ~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 55 SNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIE 118 (129)
T ss_dssp TT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS--
T ss_pred ecccccccccccccccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEEC
Confidence 334455555554421111223445566666666654 2555555556555 666666553 344443
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.10 E-value=0.067 Score=48.40 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=96.4
Q ss_pred CCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccc---ccccc---ccccccccCCeeeEEEecCCCcc-c
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLS---GYLAC---SILPKLFKLQRLRVFSLRGYHIY-E 118 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~---~~~~~---~~~~~~~~l~~L~~L~Ls~~~l~-~ 118 (543)
...+..+++++|.|....+ .++. .+.+.+.|.+.+.++-... ..+++ -..+++.+|++|+..+||.|.++ .
T Consensus 29 ~d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4568899999999876655 5554 3345556665555543211 11222 23557778999999999999876 3
Q ss_pred cCc----cccCcccccEEecCCCCccccc-hhhh-------------cccccceeecCCCchhhhhhHH-----Hhhhcc
Q 044382 119 LPD----SIGDLRYLRYLNLSGTVIRTLP-ESVN-------------KLYNLHTLLLEGCRRLKKLCAD-----MGNLIK 175 (543)
Q Consensus 119 lp~----~~~~l~~L~~L~L~~~~i~~lp-~~~~-------------~l~~L~~L~l~~~~~~~~l~~~-----~~~l~~ 175 (543)
.|+ -+++-..|.+|.+.+|++..+. .-++ .-|.|++++...|+ +...|.. +..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 333 3578889999999999776442 1122 35678999888874 3333322 222247
Q ss_pred cceeecCCCCCccc------cccccccccccccccc
Q 044382 176 LHHLNDSNTDSLEE------MPLGIGKLTCLQTLCN 205 (543)
Q Consensus 176 L~~L~l~~~~~~~~------lp~~l~~l~~L~~L~~ 205 (543)
|.++.+..|. ++. +.-++..+.+|+.|++
T Consensus 187 lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDl 221 (388)
T COG5238 187 LKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDL 221 (388)
T ss_pred ceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeec
Confidence 8888887777 331 0122445566776654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.59 E-value=0.0044 Score=54.42 Aligned_cols=59 Identities=19% Similarity=0.035 Sum_probs=28.5
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCC
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 160 (543)
-+..|..|+++.|.+..+|..++.+..++.+++..|..+.+|.+.+..+++++++.-.+
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 44444444554444444444444444444444444444444444444454444444443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.20 E-value=0.43 Score=38.83 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCCccEEEEecc-cCcc-cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEe
Q 044382 414 HLPALEMLVIVEC-NELS-ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELK 491 (543)
Q Consensus 414 ~l~~L~~L~l~~~-~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~ 491 (543)
...+|+.+.+.+. ..+. ..+..+++|+.+.+.+.-...-..++..+++++++.+.+ .+..++...|..+++|+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 3456777776532 1111 245557788889887752222345677787899999976 66667777788899999999
Q ss_pred cccCCCCccccccCccccccCCccceEeeccCCCCcccchh
Q 044382 492 INNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 492 l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
+.. +++.++ ...+... +|+.+.+.+ +++.++..
T Consensus 88 ~~~--~~~~i~---~~~f~~~-~l~~i~~~~--~~~~i~~~ 120 (129)
T PF13306_consen 88 IPS--NITEIG---SSSFSNC-NLKEINIPS--NITKIEEN 120 (129)
T ss_dssp ETT--T-BEEH---TTTTTT--T--EEE-TT--B-SS----
T ss_pred cCc--cccEEc---hhhhcCC-CceEEEECC--CccEECCc
Confidence 865 477776 3367776 888887764 55555443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.37 E-value=0.0083 Score=52.74 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..+++.++||++.|.+..+-..|+.+..|..|+++.|.+..+|..++.+..++.++...| .....|...++.++++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 34467788889998888877777778888888899988888888888888888888888775 67778877888888888
Q ss_pred eecCCCCCcc
Q 044382 179 LNDSNTDSLE 188 (543)
Q Consensus 179 L~l~~~~~~~ 188 (543)
++..++.+..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 8888877433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.11 E-value=0.12 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccccEEecCCCCccccchh
Q 044382 127 RYLRYLNLSGTVIRTLPES 145 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~ 145 (543)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.11 E-value=0.12 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccccEEecCCCCccccchh
Q 044382 127 RYLRYLNLSGTVIRTLPES 145 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~ 145 (543)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.87 E-value=0.27 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=14.6
Q ss_pred CCccceEeeccCCCCcccc
Q 044382 512 ICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 512 l~~L~~L~l~~c~~l~~~~ 530 (543)
+++|++|++++|++++...
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 3688888899998887643
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.05 E-value=0.32 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCeeeEEEecCCCccccCcc
Q 044382 103 LQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999865
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.05 E-value=0.32 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCeeeEEEecCCCccccCcc
Q 044382 103 LQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999865
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.67 E-value=1.2 Score=24.50 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=12.0
Q ss_pred cccEEecCCCCccccch
Q 044382 128 YLRYLNLSGTVIRTLPE 144 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~ 144 (543)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777765
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.67 E-value=0.077 Score=53.80 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=22.7
Q ss_pred cccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCC
Q 044382 252 KNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGG 299 (543)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 299 (543)
..++++++..|.+++ .........+..+++++.+.+.++..
T Consensus 262 ~~l~~l~l~~nsi~~-------~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITE-------KGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccc-------cchHHHHHHHhhhHHHHHhhcccCcc
Confidence 556666666665521 12233444555566677777766654
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.60 E-value=4.1 Score=21.69 Aligned_cols=10 Identities=50% Similarity=0.451 Sum_probs=3.3
Q ss_pred ccceeecCCC
Q 044382 151 NLHTLLLEGC 160 (543)
Q Consensus 151 ~L~~L~l~~~ 160 (543)
+|++|++++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3444444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.36 E-value=3.3 Score=22.87 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=10.1
Q ss_pred ccccEEecCCCCcccc
Q 044382 127 RYLRYLNLSGTVIRTL 142 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~l 142 (543)
.+|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666677776666544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.02 E-value=7.8 Score=21.70 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=8.4
Q ss_pred ccccEEecCCCCcc
Q 044382 127 RYLRYLNLSGTVIR 140 (543)
Q Consensus 127 ~~L~~L~L~~~~i~ 140 (543)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.84 E-value=0.6 Score=47.48 Aligned_cols=164 Identities=18% Similarity=0.054 Sum_probs=97.7
Q ss_pred CCCceEEEeeccccCCccchhhhh-cCCCc-eEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-----cc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLY-DIQHL-RTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-----EL 119 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L-~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-----~l 119 (543)
-..+..|++..|.+..... ..+. .+... ..|..+.+..+.+.+.--..+...+.....++.++++.|.+. .+
T Consensus 114 ~~~L~~L~l~~n~l~~~g~-~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGA-RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred cccHhHhhcccCCCccHhH-HHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 3557778888888763221 2221 22222 233334566666665433445556667889999999999864 12
Q ss_pred Ccccc----CcccccEEecCCCCcccc-----chhhhcccc-cceeecCCCchhh----hhhHHHhhh-cccceeecCCC
Q 044382 120 PDSIG----DLRYLRYLNLSGTVIRTL-----PESVNKLYN-LHTLLLEGCRRLK----KLCADMGNL-IKLHHLNDSNT 184 (543)
Q Consensus 120 p~~~~----~l~~L~~L~L~~~~i~~l-----p~~~~~l~~-L~~L~l~~~~~~~----~l~~~~~~l-~~L~~L~l~~~ 184 (543)
+..+. ...++++|++.+|.++.- -..+...+. +..+++..|..-+ .+...+..+ ..++++++..|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 33343 588899999999977721 223344555 6678888764322 233335555 67899999999
Q ss_pred CCcccc----ccccccccccccccceEecCC
Q 044382 185 DSLEEM----PLGIGKLTCLQTLCNFVVGKD 211 (543)
Q Consensus 185 ~~~~~l----p~~l~~l~~L~~L~~~~~~~~ 211 (543)
.+...- .+.+..+..++.+.+..+...
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 844432 233455567777765544443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.68 E-value=28 Score=35.61 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=19.5
Q ss_pred cCCeeeEEEecCCCcccc---CccccCcccccEEecCCC
Q 044382 102 KLQRLRVFSLRGYHIYEL---PDSIGDLRYLRYLNLSGT 137 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~l---p~~~~~l~~L~~L~L~~~ 137 (543)
+.+.+..+.|++|++..+ ..--..-++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455666666666664433 111235566666666666
Done!