Query 044382
Match_columns 543
No_of_seqs 208 out of 2814
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-35 4.7E-40 313.4 32.3 440 43-530 27-537 (606)
2 3t6q_A CD180 antigen; protein- 100.0 1.3E-34 4.6E-39 305.9 29.7 433 43-523 28-533 (606)
3 2z63_A TOLL-like receptor 4, v 100.0 1.7E-33 5.9E-38 295.3 30.8 446 43-534 23-539 (570)
4 3rgz_A Protein brassinosteroid 100.0 5.3E-35 1.8E-39 315.9 18.8 95 433-533 628-724 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-33 1E-37 299.6 31.6 463 43-534 20-604 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-33 8.9E-38 296.0 29.2 430 46-526 54-558 (606)
7 3rgz_A Protein brassinosteroid 100.0 1.4E-34 4.8E-39 312.6 17.7 412 83-531 107-556 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 1.8E-32 6.3E-37 294.1 28.8 393 47-502 322-843 (876)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-32 4.9E-37 300.0 27.7 431 46-523 22-536 (844)
10 4eco_A Uncharacterized protein 100.0 1E-32 3.6E-37 291.3 24.8 417 48-527 81-633 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-33 1.6E-37 290.5 21.5 452 44-533 22-517 (549)
12 3t6q_A CD180 antigen; protein- 100.0 1.4E-31 4.9E-36 282.6 27.5 433 50-530 14-516 (606)
13 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-31 1.9E-35 281.9 32.1 439 48-524 73-620 (680)
14 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-31 2.3E-35 272.2 25.9 434 44-525 17-480 (520)
15 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-30 1.4E-34 280.6 31.7 432 45-526 45-560 (844)
16 4eco_A Uncharacterized protein 100.0 1E-31 3.5E-36 283.7 16.9 418 77-535 82-608 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 6.7E-31 2.3E-35 282.1 23.4 417 77-536 324-849 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-29 4.7E-34 269.2 32.4 459 43-524 47-578 (635)
19 2z63_A TOLL-like receptor 4, v 100.0 5E-30 1.7E-34 269.0 27.7 406 46-497 50-530 (570)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-30 1E-34 267.4 21.1 438 50-532 2-462 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 9.1E-30 3.1E-34 265.6 22.6 420 73-531 26-490 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-29 1.7E-33 260.3 27.4 425 51-526 34-510 (562)
23 1o6v_A Internalin A; bacterial 100.0 2.9E-28 1E-32 248.3 22.5 325 100-501 64-390 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-28 1.3E-32 253.6 21.3 409 79-532 34-491 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 8.5E-28 2.9E-32 242.7 20.0 371 47-524 10-407 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-27 4.8E-32 243.0 21.8 143 46-195 28-175 (455)
27 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-26 4.8E-31 234.0 20.3 146 283-475 208-353 (457)
28 1o6v_A Internalin A; bacterial 99.9 3.9E-26 1.3E-30 232.6 23.6 347 47-479 45-393 (466)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1E-26 3.5E-31 235.1 18.2 317 68-501 37-354 (457)
30 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-25 5.2E-30 238.0 26.7 430 74-532 53-560 (635)
31 4fmz_A Internalin; leucine ric 99.9 2E-26 6.8E-31 225.8 17.9 83 434-524 262-344 (347)
32 3o6n_A APL1; leucine-rich repe 99.9 2E-25 6.7E-30 222.2 19.6 302 102-500 43-353 (390)
33 2id5_A Lingo-1, leucine rich r 99.9 1.5E-24 5.2E-29 221.9 25.1 311 82-500 17-334 (477)
34 3v47_A TOLL-like receptor 5B a 99.9 3.2E-25 1.1E-29 225.7 19.8 361 73-534 30-416 (455)
35 4fmz_A Internalin; leucine ric 99.9 3.6E-25 1.2E-29 216.8 19.2 82 390-495 261-343 (347)
36 1jl5_A Outer protein YOPM; leu 99.9 4.9E-25 1.7E-29 222.5 20.5 342 81-528 16-371 (454)
37 2id5_A Lingo-1, leucine rich r 99.9 9.8E-25 3.3E-29 223.3 22.2 314 50-471 13-331 (477)
38 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.6E-29 228.8 19.6 306 103-499 50-358 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 2.3E-24 7.8E-29 214.5 20.7 303 72-471 44-350 (390)
40 3oja_B Anopheles plasmodium-re 99.9 7.7E-24 2.6E-28 222.3 20.7 302 72-449 50-357 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-22 2.1E-26 192.3 23.7 288 104-525 33-332 (332)
42 1xku_A Decorin; proteoglycan, 99.9 7.5E-22 2.6E-26 191.6 21.3 288 104-523 31-329 (330)
43 3ogk_B Coronatine-insensitive 99.9 5.8E-25 2E-29 231.5 -2.0 84 102-185 110-203 (592)
44 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-23 2E-27 197.4 11.0 142 48-197 50-197 (313)
45 4fcg_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 193.3 15.1 231 102-403 79-310 (328)
46 3ogk_B Coronatine-insensitive 99.9 3.9E-24 1.3E-28 225.2 -0.8 414 47-522 72-547 (592)
47 1xku_A Decorin; proteoglycan, 99.9 2.1E-20 7.1E-25 181.4 21.9 292 49-404 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-20 3.8E-25 183.5 19.6 291 48-404 33-330 (332)
49 4fcg_A Uncharacterized protein 99.9 2.1E-21 7.1E-26 187.7 12.3 125 72-205 80-213 (328)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.7E-24 187.7 24.1 100 393-501 200-299 (622)
51 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-23 4.4E-28 214.2 -6.8 394 47-496 2-438 (461)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-21 9.1E-26 185.8 9.6 223 77-345 51-278 (313)
53 2p1m_B Transport inhibitor res 99.8 2.1E-23 7.3E-28 219.7 -5.6 257 248-525 231-518 (594)
54 1z7x_W Ribonuclease inhibitor; 99.8 6.2E-24 2.1E-28 216.5 -11.0 130 392-525 282-439 (461)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4.1E-24 188.8 20.2 78 393-473 220-297 (622)
56 2p1m_B Transport inhibitor res 99.8 5.3E-23 1.8E-27 216.6 -5.7 151 48-205 66-242 (594)
57 2z80_A TOLL-like receptor 2, v 99.8 7E-20 2.4E-24 179.4 16.0 157 286-496 148-312 (353)
58 2z80_A TOLL-like receptor 2, v 99.8 9.5E-20 3.2E-24 178.5 13.8 253 45-346 49-312 (353)
59 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 179.9 17.2 221 73-346 64-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 180.3 16.7 240 50-346 56-301 (452)
61 2z66_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 171.2 12.8 80 105-185 29-112 (306)
62 2z66_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 169.7 14.1 223 74-346 29-259 (306)
63 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 176.2 15.3 236 82-376 49-290 (440)
64 3zyi_A Leucine-rich repeat-con 99.8 9.2E-19 3.1E-23 177.4 14.6 236 82-376 60-301 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-19 5.5E-24 173.9 7.0 291 104-530 10-303 (317)
66 1wwl_A Monocyte differentiatio 99.8 6.4E-19 2.2E-23 169.3 8.4 246 48-346 43-307 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-19 5.9E-24 173.7 3.1 265 102-430 32-300 (317)
68 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.3E-23 163.5 10.6 142 51-204 14-159 (285)
69 1ozn_A Reticulon 4 receptor; N 99.7 3.6E-16 1.2E-20 148.1 21.7 129 391-525 102-237 (285)
70 2z62_A TOLL-like receptor 4, v 99.7 7.3E-17 2.5E-21 152.1 13.6 202 105-346 29-235 (276)
71 3oja_A Leucine-rich immune mol 99.7 2.7E-17 9.2E-22 167.6 11.1 211 74-345 35-247 (487)
72 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.9E-22 170.3 8.2 58 126-185 33-91 (487)
73 2z62_A TOLL-like receptor 4, v 99.7 1.3E-16 4.3E-21 150.5 14.2 149 44-201 24-176 (276)
74 1wwl_A Monocyte differentiatio 99.7 6.5E-18 2.2E-22 162.2 4.8 121 75-205 42-180 (312)
75 3rfs_A Internalin B, repeat mo 99.7 7.1E-17 2.4E-21 151.7 11.4 100 100-203 37-138 (272)
76 2o6q_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 145.6 17.3 113 82-203 22-138 (270)
77 1p9a_G Platelet glycoprotein I 99.7 3.6E-16 1.2E-20 148.1 15.2 119 72-203 9-129 (290)
78 1h6u_A Internalin H; cell adhe 99.7 8.4E-17 2.9E-21 154.0 10.8 190 102-346 39-228 (308)
79 2xwt_C Thyrotropin receptor; s 99.7 1.1E-15 3.6E-20 140.8 17.7 196 313-526 32-239 (239)
80 2o6q_A Variable lymphocyte rec 99.7 3.8E-15 1.3E-19 139.7 20.4 189 289-494 18-214 (270)
81 2ast_B S-phase kinase-associat 99.7 1.2E-17 4E-22 162.5 1.3 115 82-203 53-173 (336)
82 4ay9_X Follicle-stimulating ho 99.6 3.4E-15 1.2E-19 145.7 17.3 218 292-532 14-242 (350)
83 1p9a_G Platelet glycoprotein I 99.6 6.4E-15 2.2E-19 139.4 18.2 199 283-524 6-206 (290)
84 4glp_A Monocyte differentiatio 99.6 1.5E-16 5.1E-21 152.6 6.9 204 103-346 90-305 (310)
85 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.4E-20 145.7 13.2 171 100-324 59-229 (308)
86 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.7E-20 142.9 13.2 123 69-203 37-162 (272)
87 2xwt_C Thyrotropin receptor; s 99.6 1.4E-15 4.9E-20 139.9 11.7 131 46-185 29-167 (239)
88 2ast_B S-phase kinase-associat 99.6 1.9E-16 6.5E-21 153.9 5.2 244 47-345 46-303 (336)
89 4ay9_X Follicle-stimulating ho 99.6 3.7E-15 1.3E-19 145.3 12.9 225 44-344 26-255 (350)
90 2ca6_A RAN GTPase-activating p 99.6 1.4E-16 4.8E-21 157.9 2.6 245 67-346 26-314 (386)
91 2ca6_A RAN GTPase-activating p 99.6 4.6E-17 1.6E-21 161.4 -1.2 241 95-376 23-314 (386)
92 1h6t_A Internalin B; cell adhe 99.6 1.8E-15 6.3E-20 143.3 8.6 98 101-204 43-140 (291)
93 4glp_A Monocyte differentiatio 99.6 7.1E-15 2.4E-19 140.9 12.5 227 49-325 65-307 (310)
94 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 135.0 11.6 157 43-209 30-190 (251)
95 3m19_A Variable lymphocyte rec 99.6 4.8E-14 1.6E-18 130.6 15.3 80 105-185 36-118 (251)
96 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.7E-19 126.8 11.1 146 47-207 43-190 (197)
97 1m9s_A Internalin B; cell inva 99.5 6.5E-15 2.2E-19 153.0 7.1 172 100-325 39-210 (605)
98 3goz_A Leucine-rich repeat-con 99.5 2.8E-15 9.5E-20 147.0 3.1 103 83-185 29-149 (362)
99 3goz_A Leucine-rich repeat-con 99.5 8.4E-15 2.9E-19 143.6 5.5 138 45-185 19-178 (362)
100 2ell_A Acidic leucine-rich nuc 99.5 9.9E-14 3.4E-18 119.9 9.5 137 45-192 21-164 (168)
101 2v9t_B SLIT homolog 2 protein 99.5 1.3E-13 4.6E-18 124.6 10.2 131 46-185 30-163 (220)
102 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 124.5 11.2 101 102-204 62-165 (229)
103 1xeu_A Internalin C; cellular 99.5 3.6E-14 1.2E-18 132.2 5.9 101 74-185 17-117 (263)
104 2v70_A SLIT-2, SLIT homolog 2 99.5 1.6E-13 5.6E-18 124.1 10.1 146 51-207 14-162 (220)
105 1h6t_A Internalin B; cell adhe 99.5 2.5E-13 8.7E-18 128.5 11.7 168 47-264 45-212 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-13 7.6E-18 123.2 10.1 139 43-188 27-167 (220)
107 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.6E-18 115.9 8.1 115 83-204 24-146 (149)
108 1m9s_A Internalin B; cell inva 99.4 1.2E-13 4E-18 143.6 8.2 80 102-185 85-164 (605)
109 2ell_A Acidic leucine-rich nuc 99.4 2.9E-13 9.8E-18 117.0 8.8 127 73-209 24-158 (168)
110 4ezg_A Putative uncharacterize 99.4 3.1E-13 1.1E-17 120.1 9.2 125 70-205 41-166 (197)
111 2o6s_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 118.9 11.5 133 44-185 24-159 (208)
112 1xeu_A Internalin C; cellular 99.4 1.3E-12 4.5E-17 121.6 12.6 144 47-209 40-183 (263)
113 2xot_A Amphoterin-induced prot 99.4 2.7E-13 9.2E-18 132.7 8.1 152 43-204 34-195 (361)
114 2v9t_B SLIT homolog 2 protein 99.4 7.2E-13 2.4E-17 119.8 9.5 146 51-208 14-162 (220)
115 1a9n_A U2A', U2A'; complex (nu 99.4 7.3E-13 2.5E-17 115.3 8.6 84 101-185 61-151 (176)
116 2je0_A Acidic leucine-rich nuc 99.4 7.4E-13 2.5E-17 111.9 8.3 129 45-183 14-149 (149)
117 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 118.6 10.9 136 43-187 35-172 (229)
118 3cvr_A Invasion plasmid antige 99.4 1.1E-11 3.7E-16 127.4 18.0 174 288-495 60-240 (571)
119 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.3E-17 133.6 11.4 54 287-346 180-241 (571)
120 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-12 7.8E-17 112.2 9.7 127 70-208 16-150 (176)
121 2wfh_A SLIT homolog 2 protein 99.3 1.8E-12 6.2E-17 114.5 8.0 98 105-204 32-132 (193)
122 2o6s_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 112.4 10.5 143 51-206 10-156 (208)
123 2xot_A Amphoterin-induced prot 99.3 1.9E-11 6.5E-16 119.5 14.1 110 391-524 85-200 (361)
124 1w8a_A SLIT protein; signaling 99.3 3.2E-12 1.1E-16 112.9 7.2 127 51-187 11-139 (192)
125 1w8a_A SLIT protein; signaling 99.3 6.7E-12 2.3E-16 110.8 9.0 119 82-208 14-136 (192)
126 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7.2E-17 137.6 6.6 108 99-208 219-326 (727)
127 4b8c_D Glucose-repressible alc 99.3 1.9E-12 6.4E-17 138.0 4.7 119 69-196 220-338 (727)
128 1dce_A Protein (RAB geranylger 99.2 7.1E-12 2.4E-16 129.4 8.0 99 105-207 442-542 (567)
129 1ds9_A Outer arm dynein; leuci 99.2 6.6E-13 2.2E-17 118.1 -1.2 126 68-204 43-180 (198)
130 1ds9_A Outer arm dynein; leuci 99.2 2.2E-13 7.7E-18 121.1 -5.0 126 76-205 18-147 (198)
131 2wfh_A SLIT homolog 2 protein 99.2 6.8E-11 2.3E-15 104.3 9.9 122 51-185 13-137 (193)
132 3sb4_A Hypothetical leucine ri 99.2 3.6E-10 1.2E-14 109.0 15.1 81 433-519 246-327 (329)
133 2r9u_A Variable lymphocyte rec 99.2 3E-11 1E-15 104.5 6.3 105 81-194 17-124 (174)
134 1dce_A Protein (RAB geranylger 99.1 1E-10 3.5E-15 120.7 10.6 118 74-203 442-565 (567)
135 2o6r_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 99.7 9.6 124 50-185 9-135 (177)
136 3sb4_A Hypothetical leucine ri 99.1 7.1E-10 2.4E-14 106.9 12.5 56 286-344 225-283 (329)
137 3g39_A Variable lymphocyte rec 99.1 1.5E-10 5E-15 99.9 6.7 96 82-185 15-113 (170)
138 2o6r_A Variable lymphocyte rec 99.1 5.1E-10 1.7E-14 97.3 10.3 115 44-166 24-140 (177)
139 4fs7_A Uncharacterized protein 99.0 2.3E-08 7.7E-13 98.9 18.9 84 432-522 292-375 (394)
140 2r9u_A Variable lymphocyte rec 99.0 6E-10 2E-14 96.3 6.4 100 106-209 14-116 (174)
141 4fs7_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 97.3 20.3 165 311-518 229-393 (394)
142 3g39_A Variable lymphocyte rec 99.0 5.8E-10 2E-14 96.1 6.2 101 105-209 10-113 (170)
143 2ifg_A High affinity nerve gro 98.8 8.9E-09 3E-13 100.0 6.9 97 82-185 14-114 (347)
144 4fdw_A Leucine rich hypothetic 98.7 3.6E-07 1.2E-11 89.9 18.3 60 455-522 295-354 (401)
145 4fdw_A Leucine rich hypothetic 98.7 2.1E-07 7.2E-12 91.6 15.3 94 105-204 136-232 (401)
146 3un9_A NLR family member X1; l 98.7 4.3E-09 1.5E-13 102.7 2.7 159 45-208 69-249 (372)
147 2ifg_A High affinity nerve gro 98.7 1.6E-08 5.4E-13 98.3 6.2 99 108-209 12-114 (347)
148 3e4g_A ATP synthase subunit S, 98.6 7.3E-09 2.5E-13 87.8 2.3 89 438-529 62-155 (176)
149 3un9_A NLR family member X1; l 98.6 1.6E-08 5.6E-13 98.5 4.6 137 48-189 101-253 (372)
150 4gt6_A Cell surface protein; l 98.4 1.6E-05 5.4E-10 78.4 20.5 77 102-181 61-144 (394)
151 3e4g_A ATP synthase subunit S, 98.2 3.6E-07 1.2E-11 77.5 2.6 69 433-501 81-155 (176)
152 2ra8_A Uncharacterized protein 98.2 5.6E-07 1.9E-11 86.9 3.9 65 458-523 250-317 (362)
153 1io0_A Tropomodulin; LRR prote 98.2 1.3E-06 4.6E-11 75.9 5.2 113 70-185 33-162 (185)
154 4gt6_A Cell surface protein; l 98.1 8.1E-05 2.8E-09 73.2 17.3 107 67-184 57-170 (394)
155 4h09_A Hypothetical leucine ri 98.1 0.00018 6.3E-09 70.3 18.6 64 435-502 284-348 (379)
156 3rw6_A Nuclear RNA export fact 98.0 5.1E-06 1.8E-10 76.0 5.4 59 125-185 168-231 (267)
157 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.6E-11 75.3 1.8 112 47-161 35-162 (185)
158 3rw6_A Nuclear RNA export fact 97.8 1.9E-06 6.4E-11 78.9 -0.7 80 101-181 167-258 (267)
159 4h09_A Hypothetical leucine ri 97.8 0.00035 1.2E-08 68.3 15.4 142 311-486 216-357 (379)
160 2ra8_A Uncharacterized protein 97.8 3E-05 1E-09 74.8 7.3 150 48-208 139-317 (362)
161 3rfe_A Platelet glycoprotein I 96.4 0.0034 1.1E-07 50.5 4.8 35 105-139 32-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0024 8.2E-08 55.0 3.4 90 96-185 62-168 (197)
163 3rfe_A Platelet glycoprotein I 95.9 0.012 4.1E-07 47.1 5.6 54 107-162 11-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.9 0.01 3.5E-07 51.1 2.3 112 47-161 40-168 (197)
165 2lz0_A Uncharacterized protein 77.3 3 0.0001 31.2 4.4 39 454-494 14-52 (100)
166 2lz0_A Uncharacterized protein 70.6 4.9 0.00017 29.9 4.2 46 472-522 7-52 (100)
167 2a5y_B CED-4; apoptosis; HET: 58.4 3.2 0.00011 42.1 1.5 31 2-32 442-473 (549)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-35 Score=313.41 Aligned_cols=440 Identities=17% Similarity=0.093 Sum_probs=250.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Cc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~ 121 (543)
+..++.++++|++++|.+..... ..+.++++|++|. +++|.+.+ + .+.+|.++++|++|++++|.++.+ |.
T Consensus 27 p~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~l~~-i---~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 27 PDDIPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLD---LSRCEIET-I---EDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp CTTSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-E---CTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCCCCCcCEEECCCCCcCEeCh-hhccCCccCcEEe---CCCCcccc-c---CHHHhhchhhcCEeECCCCcccccChh
Confidence 44677899999999999876654 5677777777775 99998885 2 233455999999999999999877 77
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
+|+++++|++|++++|.++.+| ..++.+++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 8999999999999999999885 679999999999999985433 57888999999999999999944434556777766
Q ss_pred ccc----ccceEecCCC--CCCh---------------------hhhccccccccceec--cc-----------------
Q 044382 200 LQT----LCNFVVGKDS--GSGL---------------------RELKSLIHLQGTLKI--SK----------------- 233 (543)
Q Consensus 200 L~~----L~~~~~~~~~--~~~~---------------------~~l~~l~~l~~~L~~--~~----------------- 233 (543)
|+. |++..+.... ...+ ..+.++..++ .+.+ ..
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH-VHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCE-EEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccc-cccccccccccCCcccccChHHhhh
Confidence 653 3221111100 0000 0011111111 0000 00
Q ss_pred ----------ccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC
Q 044382 234 ----------LENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP 303 (543)
Q Consensus 234 ----------l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 303 (543)
+..........+. +..+++|+.++++++.... +..+..+++|+.|+++++....+|
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-------------l~~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-------------LEDVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-------------CCCCCTTCCCSEEEEESCCCSSCC
T ss_pred hhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-------------hhhccccccCCEEEcccccCcccc
Confidence 0011111222222 5666777777777666522 124556777888888887776666
Q ss_pred CCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeee---CccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRL---GSKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.+ .+++|++|++++|.....+ .+..+++|++|++++|. ++.. ...+ ..+++|++|+++++. +..
T Consensus 324 ~~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~------~~~~~L~~L~L~~n~-l~~ 390 (606)
T 3vq2_A 324 TL----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSD------LGTNSLRHLDLSFNG-AII 390 (606)
T ss_dssp CC----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHH------HCCSCCCEEECCSCS-EEE
T ss_pred cC----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhh------ccCCcccEeECCCCc-ccc
Confidence 44 3677777877777544433 45567777777777663 3322 1111 224555555555532 222
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV-- 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~-- 451 (543)
.. .. +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++++|....
T Consensus 391 ~~--~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 391 MS--AN---FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp EC--CC---CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ch--hh---ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 11 11 344555555555553 3332222 123445555554443222 123334445555555444332
Q ss_pred eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccc
Q 044382 452 WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 452 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.+..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+. |..+..+++|++|++++| +++.+|
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~~~~l~~L~~L~l~~N-~l~~~p 537 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLD---SSHYNQLYSLSTLDCSFN-RIETSK 537 (606)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEE---GGGTTTCTTCCEEECTTS-CCCCEE
T ss_pred hHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcC---HHHccCCCcCCEEECCCC-cCcccC
Confidence 3344444455555555553 333333333444455555555543 333332 334444444555555444 244444
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-34 Score=305.86 Aligned_cols=433 Identities=14% Similarity=0.086 Sum_probs=246.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Cc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~ 121 (543)
+..++..+++|++++|.+..... .++.++++|++|. +++|.+.+ ..+.+|.++++|++|++++|.++.+ |.
T Consensus 28 P~~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLTFLD---LTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp CTTSCTTCCEEECTTCCCSEECT-TTSTTCTTCSEEE---CTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred cCCCCCcCcEEEccCCccCcCCh-hHhccCccceEEE---CCCCccce----eChhhccCccccCeeeCCCCcccccChh
Confidence 45678899999999999876654 6677777777775 89998875 3344566999999999999998866 66
Q ss_pred cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhh--hHHHhhhcccceeecCCCCCcccc-ccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEM-PLGIGKL 197 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l 197 (543)
+|+.+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |. +..+++|++|++++|. +..+ |..++.+
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 799999999999999999987 6778999999999999984 4443 44 4458999999999998 5544 5567778
Q ss_pred cccc--cccceEecCCC--CCChh--------------------hhccc--------------------------c--cc
Q 044382 198 TCLQ--TLCNFVVGKDS--GSGLR--------------------ELKSL--------------------------I--HL 225 (543)
Q Consensus 198 ~~L~--~L~~~~~~~~~--~~~~~--------------------~l~~l--------------------------~--~l 225 (543)
++|+ .|++..+.... ...+. .+..+ . .+
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 8877 33322211110 00000 00000 0 11
Q ss_pred ccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-
Q 044382 226 QGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT- 304 (543)
Q Consensus 226 ~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 304 (543)
+ .+.+.. ..........+..+++|++|++++|..+.. +..+..+++|++|+++++....++.
T Consensus 257 ~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l------------p~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 257 E-SINLQK----HYFFNISSNTFHCFSGLQELDLTATHLSEL------------PSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp E-EEECTT----CCCSSCCTTTTTTCTTCSEEECTTSCCSCC------------CSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred e-EEEeec----CccCccCHHHhccccCCCEEeccCCccCCC------------ChhhcccccCCEEECccCCcCcCchh
Confidence 1 111111 011122223367778888888877776433 2345556677777777766554422
Q ss_pred CCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeee--CccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 305 WLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRL--GSKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 305 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.+. .+++|++|++++|.....++ .+..+++|++|++++|...... ... ...+++|++|+++++. +..
T Consensus 320 ~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~-l~~ 390 (606)
T 3t6q_A 320 SAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNE-PLS 390 (606)
T ss_dssp CGG--GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCS-CEE
T ss_pred hhh--ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCc-CCc
Confidence 333 26677777777665554444 3566677777777666322221 111 2335566666665542 222
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV-- 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~-- 451 (543)
..... +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|++|++++|....
T Consensus 391 ~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 391 LKTEA----FKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp ECTTT----TTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CCHHH----hcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 11111 234555555555553 3332222 123455555555543221 123334555555555554322
Q ss_pred e--ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccC
Q 044382 452 W--RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 452 ~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
+ +..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+. |..+..+++| +|++++|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSS---IEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGG---GGGGTTCCSC-EEECCSS
T ss_pred cccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCC---hhHhCccccc-EEECcCC
Confidence 1 123444555555555553 344443333455555555555552 344333 3344444555 5555444
No 3
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=295.28 Aligned_cols=446 Identities=16% Similarity=0.137 Sum_probs=309.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-c
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-D 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~ 121 (543)
+..++.++++|+++.|.+..... .++..+++|++|. +++|.+.+ +++ ..|.++++|++|++++|.++.++ .
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~i~~-i~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECT-TTTTTCSSCCEEE---CTTCCCCE-ECT---TTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccccEEEccCCccCccCh-hHhhCCCCceEEE---CCCCcCCc-cCc---ccccCchhCCEEeCcCCcCCccCHh
Confidence 34577899999999999876654 5666777777775 89998875 222 34558999999999999998775 6
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCcccc-cccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEM-PLGIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~ 198 (543)
+|+++++|++|++++|.++.+|. .++.+++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchh
Confidence 79999999999999999998865 68999999999999985333 468889999999999999999 5544 45677777
Q ss_pred cc----ccccceEecCCC--CCChhh---------------------hcccccccc-ceecccc----------------
Q 044382 199 CL----QTLCNFVVGKDS--GSGLRE---------------------LKSLIHLQG-TLKISKL---------------- 234 (543)
Q Consensus 199 ~L----~~L~~~~~~~~~--~~~~~~---------------------l~~l~~l~~-~L~~~~l---------------- 234 (543)
+| +.|++..+.... ...+.. +..+..++. .+.....
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 77 333322111100 000000 000000000 0000000
Q ss_pred -----------cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC
Q 044382 235 -----------ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP 303 (543)
Q Consensus 235 -----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 303 (543)
.............+..+++|++|+++++.... ....+..+ +|+.|.++++....+|
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------l~~~~~~~-~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------------VKDFSYNF-GWQHLELVNCKFGQFP 320 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS------------CCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh------------hhhhhccC-CccEEeeccCcccccC
Confidence 00001111222335566778888887766532 22334445 7888888888776666
Q ss_pred CCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeC---ccccCCCCCCCCCCcCeeeccCcccccc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLG---SKFYGDDSPIPFPCLETLRFEDLQEWEE 380 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (543)
.. .+++|+.|++.+|......+. ..+++|++|++++|. ++... .. ...+++|++|+++++.. ..
T Consensus 321 ~~----~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~------~~~~~~L~~L~l~~n~l-~~ 387 (570)
T 2z63_A 321 TL----KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQS------DFGTTSLKYLDLSFNGV-IT 387 (570)
T ss_dssp BC----BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHH------HHTCSCCCEEECCSCSE-EE
T ss_pred cc----cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccc------ccccCccCEEECCCCcc-cc
Confidence 52 377888888888866544444 678899999998874 33321 22 23478999999988643 32
Q ss_pred cccCCCCCCCCCCCcccEEeeccCcCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCe--e
Q 044382 381 WIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKV--V 451 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~--~ 451 (543)
.... +..+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++++|... .
T Consensus 388 ~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEEE-----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cccc-----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 2221 467999999999995 6664433 357899999999986544 24566899999999999875 4
Q ss_pred eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccch
Q 044382 452 WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 452 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
++..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.++ +..+..+++|++|++++||--...+.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC---TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCC---HHHhhcccCCcEEEecCCcccCCCcc
Confidence 7888999999999999996 677775556899999999999995 788886 55788999999999999865555544
Q ss_pred hhh
Q 044382 532 EEE 534 (543)
Q Consensus 532 ~~~ 534 (543)
...
T Consensus 537 ~~~ 539 (570)
T 2z63_A 537 IDY 539 (570)
T ss_dssp THH
T ss_pred hHH
Confidence 333
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-35 Score=315.90 Aligned_cols=95 Identities=4% Similarity=-0.054 Sum_probs=78.5
Q ss_pred cCCCCccceEEEcCCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc-cccccCccccc
Q 044382 433 IASLPALCKMEIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET-CIWKSHNELLQ 510 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~l~ 510 (543)
+..+++|+.|++++|... .+|..++.+++|++|++++|..-..+|.. ++.+++|++|++++| +++ .+ |..+.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N-~l~g~i----p~~l~ 701 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSN-KLDGRI----PQAMS 701 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCEECC----CGGGG
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCC-cccCcC----ChHHh
Confidence 334688999999999876 58889999999999999997544467766 899999999999995 565 66 67899
Q ss_pred cCCccceEeeccCCCCcccchhh
Q 044382 511 DICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 511 ~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
.+++|++|++++|+--..+|...
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSS
T ss_pred CCCCCCEEECcCCcccccCCCch
Confidence 99999999999997666676544
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-33 Score=299.56 Aligned_cols=463 Identities=16% Similarity=0.109 Sum_probs=250.5
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++.++++|++++|.+..... ..+.++++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|.
T Consensus 20 p~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 20 PDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLD---VGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp CSCSCTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEE---CCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred ccccCCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEE---CCCCccCc----cCHHHHhcccCcCEEECCCCccCccChh
Confidence 34577899999999998876654 5677778888775 88888876 233445588999999999999988876
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccc--cc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIG--KL 197 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~--~l 197 (543)
.|+++++|++|++++|.++.+| ..++.+++|++|++++|......|..++++++|++|++++|. +..++ ..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccc
Confidence 5889999999999999988885 568889999999999885444445557788888888888888 44444 3332 44
Q ss_pred cccccccceEecCCC--CCChhhhcccc------------------------ccccceeccc------------------
Q 044382 198 TCLQTLCNFVVGKDS--GSGLRELKSLI------------------------HLQGTLKISK------------------ 233 (543)
Q Consensus 198 ~~L~~L~~~~~~~~~--~~~~~~l~~l~------------------------~l~~~L~~~~------------------ 233 (543)
++|+.|++..+.... ...+..+.++. .++ .+.+..
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR-NLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC-EEECTTSCCCEECTTTTGGGGGSC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc-EEEccCCcccccChhHhhccCcCC
Confidence 677777544332211 11111221111 111 111110
Q ss_pred -----ccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC------CC
Q 044382 234 -----LENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT------KF 302 (543)
Q Consensus 234 -----l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~ 302 (543)
+.. .......+..+..+++|++|++++|...... ...+..+++|+.|+++++... .+
T Consensus 250 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 250 LTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-----------SHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CCEEECTT-SCCCEECTTTTTTCTTCCEEECCSCCBSEEC-----------TTTTTTCTTCCEEECTTCBCCC------C
T ss_pred CCEEECCC-CCcCccCcccccCcccccEeeCCCCccCccC-----------hhhhcCCCCccEEeccchhhhcccccccc
Confidence 000 0011111223455566666666555432211 112233344444444332211 11
Q ss_pred CCC--CCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccc-eeeeCcc-------------------cc--C
Q 044382 303 PTW--LGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSR-VNRLGSK-------------------FY--G 357 (543)
Q Consensus 303 ~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~-l~~~~~~-------------------~~--~ 357 (543)
|.. .....+++|++|++++|...+..+ .+..+++|++|++++|.. +..+... .. .
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 110 000124445555555444333222 344445555555544320 0000000 00 0
Q ss_pred CCCCCCCCCcCeeeccCcccccccccCCC--------------------CCCCCCCCcccEEeeccCcCcc--CCCCC--
Q 044382 358 DDSPIPFPCLETLRFEDLQEWEEWIPHGS--------------------SQGVERFPKLRELHILRCSKLQ--GTFPE-- 413 (543)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------------------~~~~~~~~~L~~L~l~~c~~l~--~~lp~-- 413 (543)
......+++|+.|+++++.....+..... ...+..+++|++|++++| .++ +.+|.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCccc
Confidence 00022344555555554322111110000 000223444444444442 222 12332
Q ss_pred -CCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeee---------cccCCCCCCceEEEcCCCCCcccCCCc
Q 044382 414 -HLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWR---------SATDHLGSQNSVVCRDTSNQVFLSGPL 480 (543)
Q Consensus 414 -~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~L~~L~l~~c~~l~~l~~~~ 480 (543)
.+++|+.|++.++..... .+..+++|+.|++++|....++ ..+..+++|++|++++| .++.+|...
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 344566666665543221 2344667777777776654421 12566777777777774 666777766
Q ss_pred CCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchhhh
Q 044382 481 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEEE 534 (543)
Q Consensus 481 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 534 (543)
|..+++|++|++++ ++++.++ +..+..+++|+.|++++| +++.++....
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 604 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLP---ASVFNNQVSLKSLNLQKN-LITSVEKKVF 604 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCC---TTTTTTCTTCCEEECTTS-CCCBCCHHHH
T ss_pred cccccCcceeECCC-CCCCcCC---HhHhCCCCCCCEEECCCC-cCCccChhHh
Confidence 77778888888877 5777775 335667778888888777 6777665443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-33 Score=295.96 Aligned_cols=430 Identities=16% Similarity=0.075 Sum_probs=314.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-cccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~ 124 (543)
-..++++|+++.|.+..... .++.++++|++|. +++|.+.+ ..+..|.++++|++|++++|.+..++ ..++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~---Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIED-KAWHGLHHLSNLI---LTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEE---CTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred CCccCcEEeCCCCcccccCH-HHhhchhhcCEeE---CCCCcccc----cChhhcCCcccCCEEEccCCccccccccccC
Confidence 45789999999998876544 5566777777775 99999886 33456669999999999999999876 6799
Q ss_pred CcccccEEecCCCCcc--ccchhhhcccccceeecCCCchhhhhhHHHhhhcccc----eeecCCCCCcccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIR--TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLH----HLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~----~L~l~~~~~~~~lp~~l~~l~ 198 (543)
++++|++|++++|.++ .+|..++++++|++|++++|......|..++.+++|+ +|++++|. +..++.......
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCc
Confidence 9999999999999998 4799999999999999999854444455577777665 79999888 666666544444
Q ss_pred ccccccceEecCC----------------------------------------------------C----CCChhhhccc
Q 044382 199 CLQTLCNFVVGKD----------------------------------------------------S----GSGLRELKSL 222 (543)
Q Consensus 199 ~L~~L~~~~~~~~----------------------------------------------------~----~~~~~~l~~l 222 (543)
+|+.|++..+... . ......+..+
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 6666654332110 0 0001112233
Q ss_pred cccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC
Q 044382 223 IHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF 302 (543)
Q Consensus 223 ~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 302 (543)
..++ .+.+...... ..+ .+..+++|++|++++|..... ..+ .+++|+.|+++++.....
T Consensus 285 ~~L~-~L~l~~~~~~-----~l~-~l~~~~~L~~L~l~~n~l~~l-------------p~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 285 ANVS-AMSLAGVSIK-----YLE-DVPKHFKWQSLSIIRCQLKQF-------------PTL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp TTCS-EEEEESCCCC-----CCC-CCCTTCCCSEEEEESCCCSSC-------------CCC-CCSSCCEEEEESCSSCEE
T ss_pred CCCC-EEEecCccch-----hhh-hccccccCCEEEcccccCccc-------------ccC-CCCccceeeccCCcCccc
Confidence 3333 3333322211 111 477889999999998886322 233 789999999999853322
Q ss_pred CCCCCCCCCCCccEEEeecCCCCCC--CC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccc
Q 044382 303 PTWLGDSSFLNLVTLKFEDCGMCTA--LP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWE 379 (543)
Q Consensus 303 ~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 379 (543)
. .+. .+++|++|++++|..... .+ .+..+++|++|++++|. ++.++.. ...+++|+.|++.++.. .
T Consensus 344 ~-~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~------~~~l~~L~~L~l~~n~l-~ 412 (606)
T 3vq2_A 344 F-KKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSAN------FMGLEELQHLDFQHSTL-K 412 (606)
T ss_dssp C-CCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCC------CTTCTTCCEEECTTSEE-E
T ss_pred h-hhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhh------ccCCCCCCeeECCCCcc-C
Confidence 1 222 489999999999866443 24 56789999999999984 5555533 34589999999998643 3
Q ss_pred ccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc----cccCCCCccceEEEcCCCCeee
Q 044382 380 EWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS----ISIASLPALCKMEIGGCKKVVW 452 (543)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~ 452 (543)
....... +..+++|++|++++| .+++..|. .+++|++|++.+|.... ..+..+++|+.|++++|.....
T Consensus 413 ~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 413 RVTEFSA---FLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp STTTTTT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccChhh---hhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 3322122 578999999999996 66656664 56799999999986443 3466789999999999988765
Q ss_pred -ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCC-ccceEeeccCCCC
Q 044382 453 -RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC-SLKRLLITSCPKL 526 (543)
Q Consensus 453 -~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~-~L~~L~l~~c~~l 526 (543)
+..+..+++|++|++++| .++.+++..+..+++|++|++++| +++.+ |..+..++ +|++|+++++|-.
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~----p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETS----KGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCE----ESCGGGSCTTCCEEECCSCCCC
T ss_pred ChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCccc----CHhHhhhcccCcEEEccCCCcc
Confidence 567888999999999996 677665555899999999999995 79999 44688887 6999999997543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-34 Score=312.62 Aligned_cols=412 Identities=19% Similarity=0.124 Sum_probs=230.2
Q ss_pred cCCCcccccccccccc--ccccCCeeeEEEecCCCcc-ccCccc-cCcccccEEecCCCCcccc-chh---hhcccccce
Q 044382 83 LSNGFLSGYLACSILP--KLFKLQRLRVFSLRGYHIY-ELPDSI-GDLRYLRYLNLSGTVIRTL-PES---VNKLYNLHT 154 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~--~~~~l~~L~~L~Ls~~~l~-~lp~~~-~~l~~L~~L~L~~~~i~~l-p~~---~~~l~~L~~ 154 (543)
+++|.+.+ .++. .++++++|++|++++|.+. .+|..+ .++++|++|++++|.++.. |.. +.++++|++
T Consensus 107 Ls~n~l~~----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 107 LSRNSLSG----PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp CCSSEEEE----EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred CCCCcCCC----cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 55555554 2233 4445556666666655544 223332 4555555666555555533 222 445555555
Q ss_pred eecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 155 LLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 155 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
|++++|...+..| ++.+++|++|++++|.+.+.+|. ++.+++|++|++..+... ......+..++.++ .+.+...
T Consensus 183 L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~-~L~Ls~n 257 (768)
T 3rgz_A 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-GDFSRAISTCTELK-LLNISSN 257 (768)
T ss_dssp EECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-SCHHHHTTTCSSCC-EEECCSS
T ss_pred EECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-CcccHHHhcCCCCC-EEECCCC
Confidence 5555553222222 24455555555555553333333 555555555543322211 11122333333333 3333221
Q ss_pred cCcC------------------CccchhhhccCC-ccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEe
Q 044382 235 ENIK------------------DIGDAKEARLDG-KKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGIC 295 (543)
Q Consensus 235 ~~~~------------------~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 295 (543)
.... ......+..+.. +++|++|++++|.... ..+..+..+++|++|+++
T Consensus 258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-----------~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-----------AVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-----------CCCGGGGGCTTCCEEECC
T ss_pred cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-----------ccchHHhcCCCccEEECC
Confidence 1100 011111111222 2455555554443211 122334455666666666
Q ss_pred ccCCC-CCCCC-CCCCCCCCccEEEeecCCCCCCCC-CCCCCC-ccceeeecCccceeeeCccccCCCCCCCCCCcCeee
Q 044382 296 GYGGT-KFPTW-LGDSSFLNLVTLKFEDCGMCTALP-SVGQLP-SLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLR 371 (543)
Q Consensus 296 ~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 371 (543)
+|... .+|.. +.. +++|++|++++|...+.++ .+..++ +|++|++++|.....+..... ...+++|++|+
T Consensus 327 ~n~l~~~ip~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~----~~~~~~L~~L~ 400 (768)
T 3rgz_A 327 SNNFSGELPMDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC----QNPKNTLQELY 400 (768)
T ss_dssp SSEEEEECCHHHHTT--CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT----CSTTCCCCEEE
T ss_pred CCcccCcCCHHHHhc--CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh----hcccCCccEEE
Confidence 65543 34432 332 5566666666665443444 444454 666666666633222222111 12367788888
Q ss_pred ccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc---cccCCCCccceEEEc
Q 044382 372 FEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS---ISIASLPALCKMEIG 445 (543)
Q Consensus 372 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~ 445 (543)
+.++....... ..++.+++|++|++++| .+++.+|. .+++|+.|++.+|.... ..+..+++|+.|+++
T Consensus 401 L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 401 LQNNGFTGKIP-----PTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCSSEEEEECC-----GGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCCccccccC-----HHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 88864322221 11568899999999995 77767774 46789999998886442 345568999999999
Q ss_pred CCCCe-eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCC
Q 044382 446 GCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCP 524 (543)
Q Consensus 446 ~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~ 524 (543)
+|... .++..+..+++|++|++++|.....+|.. +..+++|++|++++|+-...+ |..+..+++|++|++++|+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNI----PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEEC----CGGGGGCTTCCEEECCSSE
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcC----CHHHcCCCCCCEEECCCCc
Confidence 99886 57778888999999999997544456654 788999999999996443466 6689999999999999997
Q ss_pred CCcccch
Q 044382 525 KLQSLVA 531 (543)
Q Consensus 525 ~l~~~~~ 531 (543)
-...+|.
T Consensus 550 l~g~ip~ 556 (768)
T 3rgz_A 550 FNGTIPA 556 (768)
T ss_dssp EESBCCG
T ss_pred cCCcCCh
Confidence 6556664
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-32 Score=294.13 Aligned_cols=393 Identities=14% Similarity=0.116 Sum_probs=274.6
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeeccc-CCCcccccccc-------------------------------
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRL-SNGFLSGYLAC------------------------------- 94 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l-~~n~~~~~~~~------------------------------- 94 (543)
..+|+.|++.++.+.+... .++.+++.|+.|. + +.|.+.|..+.
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~Ld---Lss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLS---FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp TSCEEEEECTTTCCEEEEC-GGGGGCTTCCEEE---SCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCCEEEEECccCCCCCcCc-hHHhccccceEee---ecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 4679999999998876655 6777888888876 7 66654432110
Q ss_pred -----------------------------------------ccccccccCCeeeEEEecCCCccc---------------
Q 044382 95 -----------------------------------------SILPKLFKLQRLRVFSLRGYHIYE--------------- 118 (543)
Q Consensus 95 -----------------------------------------~~~~~~~~l~~L~~L~Ls~~~l~~--------------- 118 (543)
.+|+.++++++|++|+|++|.++.
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 056678899999999999999887
Q ss_pred ---cCcccc--CcccccEEecCCCCcc-ccchhhhcccccceeecCCCc-hhh-hhhHHHhhhc-------ccceeecCC
Q 044382 119 ---LPDSIG--DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCR-RLK-KLCADMGNLI-------KLHHLNDSN 183 (543)
Q Consensus 119 ---lp~~~~--~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~l~~~~~~l~-------~L~~L~l~~ 183 (543)
+|..++ ++++|++|+|++|.+. .+|..++.+++|++|++++|. ..+ .+|..++.++ +|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 888877 9999999999999765 779899999999999999986 334 6888888887 999999999
Q ss_pred CCCcccccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 184 TDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 184 ~~~~~~lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
|. +..+|. .++.+++|+.|++..+... .++ .+..+++|+.|++++
T Consensus 558 N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-------------------------------~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 558 NN-LEEFPASASLQKMVKLGLLDCVHNKVR-------------------------------HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SC-CCBCCCHHHHTTCTTCCEEECTTSCCC-------------------------------BCC-CCCTTSEESEEECCS
T ss_pred Cc-CCccCChhhhhcCCCCCEEECCCCCcc-------------------------------cch-hhcCCCcceEEECcC
Confidence 99 558888 7888888888854222110 011 266778888888887
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCC-CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCC----C--CC
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKN-LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSV----G--QL 334 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~--~l 334 (543)
|.... .+..+..+++ |+.|++++|.+..+|.++.....++|+.|++++|...+.++.+ . .+
T Consensus 605 N~l~~------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 605 NQIEE------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SCCSC------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred Ccccc------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 77632 2234566777 8888888888778887766544456899999888776554422 2 44
Q ss_pred CccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC---CCCCCCCcccEEeeccCcCccCCC
Q 044382 335 PSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS---QGVERFPKLRELHILRCSKLQGTF 411 (543)
Q Consensus 335 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~l 411 (543)
++|++|++++|. ++.++.... ..+++|+.|+++++ .+..+...... ....++++|++|+|++| +++ .+
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~~~~-----~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~l 743 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPTELF-----ATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SL 743 (876)
T ss_dssp CCEEEEECCSSC-CCSCCHHHH-----HTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CC
T ss_pred CCcCEEEccCCc-CCccCHHHH-----ccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc-cc
Confidence 588888888873 444433221 24778888888875 33332221110 00223458999999885 777 67
Q ss_pred CC-----CCCCccEEEEecccCcc--cccCCCCccceEEEcCCC------C-eeeecccCCCCCCceEEEcCCCCCcccC
Q 044382 412 PE-----HLPALEMLVIVECNELS--ISIASLPALCKMEIGGCK------K-VVWRSATDHLGSQNSVVCRDTSNQVFLS 477 (543)
Q Consensus 412 p~-----~l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~------~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 477 (543)
|. .+++|+.|++.++.... ..+..+++|+.|+|++|. . ..++..+..+++|++|++++| .++.+|
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip 822 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVD 822 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccC
Confidence 63 45677777777764332 234457888888887643 2 236667777888888888886 557777
Q ss_pred CCcCCCCCCccEEecccCCCCcccc
Q 044382 478 GPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 478 ~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.. + .++|+.|++++| .+..+.
T Consensus 823 ~~-l--~~~L~~LdLs~N-~l~~i~ 843 (876)
T 4ecn_A 823 EK-L--TPQLYILDIADN-PNISID 843 (876)
T ss_dssp SC-C--CSSSCEEECCSC-TTCEEE
T ss_pred Hh-h--cCCCCEEECCCC-CCCccC
Confidence 76 2 268888888884 455553
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=299.97 Aligned_cols=431 Identities=16% Similarity=0.145 Sum_probs=251.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~ 124 (543)
.+.++++|+++.|.+..... ..+..+++|++|. +++|...+.+++. +|.++++|++|+|++|.+..+ |.+|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~Ld---Ls~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLE---LGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEE---ECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccCeEEe---CCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 88999999999999876544 5566666666665 8888666544333 445999999999999999876 78899
Q ss_pred CcccccEEecCCCCccc-cchh--hhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccccccc--c
Q 044382 125 DLRYLRYLNLSGTVIRT-LPES--VNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKL--T 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l--~ 198 (543)
++++|++|+|++|.+++ +|.. +..+++|++|++++|......+ ..++++++|++|++++|.+....+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 99999999999999985 4554 8899999999999985444333 568999999999999999555566667766 7
Q ss_pred ccccccceEecCCCCCChhhhcccc------ccccceecccccCcCC--------------------------------c
Q 044382 199 CLQTLCNFVVGKDSGSGLRELKSLI------HLQGTLKISKLENIKD--------------------------------I 240 (543)
Q Consensus 199 ~L~~L~~~~~~~~~~~~~~~l~~l~------~l~~~L~~~~l~~~~~--------------------------------~ 240 (543)
+|+.|++..+...... ...+..+. .++ .+.+........ .
T Consensus 175 ~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccceEECCCCcccccc-ccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 7877765443322211 01111111 122 222221110000 0
Q ss_pred cchhhhccCCc--cccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCCCCCCCCccEE
Q 044382 241 GDAKEARLDGK--KNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTL 317 (543)
Q Consensus 241 ~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L 317 (543)
.......+.++ ++|+.|++++|..... ....+..+++|+.|++++|....++. .+. .+++|++|
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L 319 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVL 319 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEE
T ss_pred CCCChhhhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEE
Confidence 01111112222 4677777766554211 12345566777777777776654432 333 36777777
Q ss_pred EeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcc
Q 044382 318 KFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKL 396 (543)
Q Consensus 318 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 396 (543)
++++|......+ .+..+++|++|++++| .++.+.... ...+++|+.|+++++. ++. ...+++|
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~---------i~~~~~L 383 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQT-----FKFLEKLQTLDLRDNA-LTT---------IHFIPSI 383 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSC-----SCSCCCCCEEEEETCC-SCC---------CSSCCSC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhh-----hcCCCCCCEEECCCCC-CCc---------ccCCCCc
Confidence 777776544434 5677777777777776 333333221 2346777777777642 221 1235666
Q ss_pred cEEeeccCcCccCCCCCCC-------------------------CCccEEEEecccCccc----ccCCCCccceEEEcCC
Q 044382 397 RELHILRCSKLQGTFPEHL-------------------------PALEMLVIVECNELSI----SIASLPALCKMEIGGC 447 (543)
Q Consensus 397 ~~L~l~~c~~l~~~lp~~l-------------------------~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~~ 447 (543)
+.|++++ ++++ .+|... ++|+.|++.++..... .+..+++|+.|++++|
T Consensus 384 ~~L~l~~-N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 384 PDIFLSG-NKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SEEEEES-CCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred chhccCC-CCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 6666666 3555 444433 4444444444332210 1122344444444444
Q ss_pred CCee------eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeec
Q 044382 448 KKVV------WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLIT 521 (543)
Q Consensus 448 ~~~~------~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~ 521 (543)
.... .+..+..+++|++|++++| .++.++...+..+++|++|++++ ++++.++ +..+. ++|+.|+++
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~---~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS-NRLTVLS---HNDLP--ANLEILDIS 534 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-CCCSSCC---CCCCC--SCCCEEEEE
T ss_pred ccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-CCCCccC---hhhhh--ccccEEECC
Confidence 4321 1123444555555555553 44455544455555555555555 3555553 22222 555555555
Q ss_pred cC
Q 044382 522 SC 523 (543)
Q Consensus 522 ~c 523 (543)
++
T Consensus 535 ~N 536 (844)
T 3j0a_A 535 RN 536 (844)
T ss_dssp EE
T ss_pred CC
Confidence 55
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-32 Score=291.25 Aligned_cols=417 Identities=13% Similarity=0.116 Sum_probs=287.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCcc------cc-------------------------------
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFL------SG------------------------------- 90 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~------~~------------------------------- 90 (543)
.+|+.|++.++.+.+... .++.+++.|++|. +++|.+ .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~---Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLA---LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEE---SCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEE---CcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchh
Confidence 689999999998876655 6777888888886 777744 11
Q ss_pred -------------------------------------ccccccccccccCCeeeEEEecCCCccc---------------
Q 044382 91 -------------------------------------YLACSILPKLFKLQRLRVFSLRGYHIYE--------------- 118 (543)
Q Consensus 91 -------------------------------------~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--------------- 118 (543)
.+.. +|..++++++|++|+|++|.++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 1222 56678899999999999999987
Q ss_pred ---cCcccc--CcccccEEecCCCCcc-ccchhhhcccccceeecCCCc-hhh-hhhHHHhhh------cccceeecCCC
Q 044382 119 ---LPDSIG--DLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCR-RLK-KLCADMGNL------IKLHHLNDSNT 184 (543)
Q Consensus 119 ---lp~~~~--~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~l~~~~~~l------~~L~~L~l~~~ 184 (543)
+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ..+ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 999988 9999999999999876 679999999999999999986 444 689888887 99999999999
Q ss_pred CCcccccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 185 DSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 185 ~~~~~lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
. +..+|. .++.+++|+.|++..+... ..++ .+..+++|++|++++|
T Consensus 316 ~-l~~ip~~~~l~~l~~L~~L~L~~N~l~------------------------------g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 316 N-LKTFPVETSLQKMKKLGMLECLYNQLE------------------------------GKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp C-CSSCCCHHHHTTCTTCCEEECCSCCCE------------------------------EECC-CCEEEEEESEEECCSS
T ss_pred c-CCccCchhhhccCCCCCEEeCcCCcCc------------------------------cchh-hhCCCCCCCEEECCCC
Confidence 9 568998 8999999988864322111 0011 2556677777777766
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCC-CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCC-------C
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKN-LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVG-------Q 333 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-------~ 333 (543)
... ..+..+..+++ |+.|++++|....+|.++....+++|+.|++++|...+..| .+. .
T Consensus 364 ~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 364 QIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred ccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 542 12334555667 88888888887777776665445578888888887766555 455 6
Q ss_pred CCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC---CCCCCCCcccEEeeccCcCccCC
Q 044382 334 LPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS---QGVERFPKLRELHILRCSKLQGT 410 (543)
Q Consensus 334 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~ 410 (543)
+++|++|++++| .++.++... ...+++|++|+++++. +..+...... .....+++|++|++++| .++ .
T Consensus 432 ~~~L~~L~Ls~N-~l~~lp~~~-----~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ 502 (636)
T 4eco_A 432 GINVSSINLSNN-QISKFPKEL-----FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT-K 502 (636)
T ss_dssp CCCEEEEECCSS-CCCSCCTHH-----HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC-B
T ss_pred CCCCCEEECcCC-ccCcCCHHH-----HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCC-c
Confidence 678888888877 333333222 1236788888888753 3322221110 00112338888888884 777 6
Q ss_pred CCC-----CCCCccEEEEecccCcc--cccCCCCccceEEEcCCC------C-eeeecccCCCCCCceEEEcCCCCCccc
Q 044382 411 FPE-----HLPALEMLVIVECNELS--ISIASLPALCKMEIGGCK------K-VVWRSATDHLGSQNSVVCRDTSNQVFL 476 (543)
Q Consensus 411 lp~-----~l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~------~-~~~~~~~~~~~~L~~L~l~~c~~l~~l 476 (543)
+|. .+++|+.|++.++.... ..+..+++|+.|++++|. . ..++..+..+++|++|++++| .++.+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCcc
Confidence 663 55678888887764332 244558888999986533 2 236777888899999999996 55888
Q ss_pred CCCcCCCCCCccEEecccCCCCccccccC--ccc---cccCCccceEeeccCCCCc
Q 044382 477 SGPLKPRIPKLEELKINNIQNETCIWKSH--NEL---LQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 477 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~---l~~l~~L~~L~l~~c~~l~ 527 (543)
|.. +. ++|++|++++| .++++.... |.. ...+...+..++.+||.+.
T Consensus 582 p~~-~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 582 NEK-IT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CSC-CC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CHh-Hh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 876 32 78999999985 566553210 111 1122334556788888764
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-33 Score=290.53 Aligned_cols=452 Identities=16% Similarity=0.156 Sum_probs=304.2
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++++|.+..... .++..+++|++|. +++|.+.+ ..+.+|.++++|++|++++|.++.++..
T Consensus 22 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~---Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 22 SGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLI---LKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEE---CTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccCCCCccEEECcCCccCccCh-hhhhcCCcccEEE---CCCCCcCc----cChhhccccccCCEEECCCCccCccCHHH
Confidence 3566899999999999866543 5566777777775 99998886 2234566999999999999999988664
Q ss_pred ccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
|+++++|++|++++|.++.+ |..++.+++|++|++++|..++.+| ..++++++|++|++++|.+.+..|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 89999999999999999854 6789999999999999987677776 46889999999999999966667888999999
Q ss_pred cccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHH
Q 044382 200 LQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDV 279 (543)
Q Consensus 200 L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (543)
|++|++....... ........++.++ .+.+.......... ........+++|+.|++.++..+ .......
T Consensus 174 L~~L~l~~n~~~~-~~~~~~~~l~~L~-~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~l 243 (549)
T 2z81_A 174 IHHLTLHLSESAF-LLEIFADILSSVR-YLELRDTNLARFQF-SPLPVDEVSSPMKKLAFRGSVLT-------DESFNEL 243 (549)
T ss_dssp EEEEEEECSBSTT-HHHHHHHSTTTBS-EEEEESCBCTTCCC-CCCSSCCCCCCCCEEEEESCEEE-------HHHHHHH
T ss_pred CceEecccCcccc-cchhhHhhccccc-EEEccCCccccccc-cccchhhhhhcccceeccccccc-------hhHHHHH
Confidence 9988754433211 0000112234444 34333211111000 00001223445555555444321 0011111
Q ss_pred hc------------------------------ccCCCCCCcEEEEeccCCCCCCCCCCC----CCCCCccEEEeecCCCC
Q 044382 280 LD------------------------------MLKPHKNLEQFGICGYGGTKFPTWLGD----SSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 280 ~~------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~ 325 (543)
.. .+..+++++.+.+.++.......+..- ...++|+.|++++|..
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l- 322 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV- 322 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-
Confidence 12 223344555555555433221111000 0135788888888754
Q ss_pred CCCC-CC-CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccccccc-CCCCCCCCCCCcccEEeec
Q 044382 326 TALP-SV-GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIP-HGSSQGVERFPKLRELHIL 402 (543)
Q Consensus 326 ~~~~-~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~ 402 (543)
..+| .+ ..+++|++|++++|.....+...... ...+++|++|+++++. ++.+.. ... +..+++|++|+++
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~~~l~~L~~L~Ls 395 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC---KGAWPSLQTLVLSQNH-LRSMQKTGEI---LLTLKNLTSLDIS 395 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC---TTSSTTCCEEECTTSC-CCCHHHHHHH---GGGCTTCCEEECT
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhh---hhccccCcEEEccCCc-ccccccchhh---hhcCCCCCEEECC
Confidence 4565 33 46899999999998533322111111 3458999999999863 433321 011 4679999999999
Q ss_pred cCcCccCCCCC---CCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCC
Q 044382 403 RCSKLQGTFPE---HLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGP 479 (543)
Q Consensus 403 ~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 479 (543)
+| +++ .+|. .+++|++|++.+|.-.......+++|+.|++++|.....+ ..+++|++|++++| .++.+|..
T Consensus 396 ~N-~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~ 469 (549)
T 2z81_A 396 RN-TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDA 469 (549)
T ss_dssp TC-CCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCG
T ss_pred CC-CCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCc
Confidence 95 888 7774 4578999999998744322233579999999999776543 56899999999996 78888864
Q ss_pred cCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchhh
Q 044382 480 LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAEE 533 (543)
Q Consensus 480 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 533 (543)
..+++|++|++++ ++++.++ |..+..+++|++|++++||-....+..+
T Consensus 470 --~~l~~L~~L~Ls~-N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 470 --SLFPVLLVMKISR-NQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp --GGCTTCCEEECCS-SCCCCCC---TTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred --ccCccCCEEecCC-CccCCcC---HHHHhcCcccCEEEecCCCccCCCccHH
Confidence 5789999999999 5888886 5578999999999999998655555333
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-31 Score=282.64 Aligned_cols=433 Identities=13% Similarity=0.100 Sum_probs=298.0
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
.++++.......... ..++ ..+++| ++++|.+.+ ..+.+|.++++|++|++++|.+..+ |.+|+++++
T Consensus 14 ~~~~~c~~~~l~~iP--~~l~--~~l~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 14 NKTYNCENLGLNEIP--GTLP--NSTECL---EFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp TTEEECTTSCCSSCC--TTSC--TTCCEE---ECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CceEECCCCCcccCc--CCCC--CcCcEE---EccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 345666655543322 2232 245555 599999986 2234566999999999999999876 678999999
Q ss_pred ccEEecCCCCcccc-chhhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCCCCCccccc-cccccccccccccc
Q 044382 129 LRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~ 205 (543)
|++|++++|.++.+ |..++.+++|++|++++|. +..+ +..++++++|++|++++|. +..++ ..+..+++|+.|++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEEC
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEc
Confidence 99999999999977 7789999999999999985 4444 5668899999999999999 55542 34445899999976
Q ss_pred eEecCCCCCChhhhcccccccc-ceecccccCcCCccchhhhccCCcc--------------------------------
Q 044382 206 FVVGKDSGSGLRELKSLIHLQG-TLKISKLENIKDIGDAKEARLDGKK-------------------------------- 252 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~-~L~~~~l~~~~~~~~~~~~~l~~~~-------------------------------- 252 (543)
..+... ......+..+..++. .+.+..... ....+..+. ..
T Consensus 161 ~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l----~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 161 QNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI----AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CSSCCC-EECHHHHHTTTTCCSEEEECTTCCC----CEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred ccCccc-ccChhhhhhhcccceeEEecCCCcc----CccChhHhh-hccccccccCCchhHHHHhhhccccchhheechh
Confidence 544322 122233444444431 122222111 111111111 12
Q ss_pred --------------------ccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 253 --------------------NLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 253 --------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
+|++++++++..+.. ....+..+++|+.|+++++....+|..+.. ++
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~ 301 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-----------SSNTFHCFSGLQELDLTATHLSELPSGLVG--LS 301 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-----------CTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CT
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCcc-----------CHHHhccccCCCEEeccCCccCCCChhhcc--cc
Confidence 344444444333211 112356678899999998888888877665 88
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCccccccccc-CCCCCCC
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIP-HGSSQGV 390 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~ 390 (543)
+|++|++++|......+ .+..+++|++|++++|.....++... ...+++|++|+++++.. ..... ... +
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l-~~~~~~~~~---~ 372 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-----LENLENLRELDLSHDDI-ETSDCCNLQ---L 372 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST-----TTTCTTCCEEECCSSCC-CEEEESTTT---T
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh-----hhccCcCCEEECCCCcc-ccccCcchh---c
Confidence 89999999886655444 67788999999998885443333222 34588999999988643 33221 112 5
Q ss_pred CCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc----ccCCCCccceEEEcCCCCee-eecccCCCCCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI----SIASLPALCKMEIGGCKKVV-WRSATDHLGSQ 462 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L 462 (543)
..+++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|+.|++++|.... .+..+..+++|
T Consensus 373 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 373 RNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred ccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 78999999999995 66645453 467899999988864432 25668999999999998765 45677889999
Q ss_pred ceEEEcCCCCCcc--cC-CCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccc
Q 044382 463 NSVVCRDTSNQVF--LS-GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 463 ~~L~l~~c~~l~~--l~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
++|++++| .+.. ++ ...+..+++|++|++++| +++.++ |..+..+++|++|++++| +++.++
T Consensus 452 ~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~ 516 (606)
T 3t6q_A 452 QHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID---QHAFTSLKMMNHVDLSHN-RLTSSS 516 (606)
T ss_dssp CEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC---TTTTTTCTTCCEEECCSS-CCCGGG
T ss_pred CEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccC---hhhhccccCCCEEECCCC-ccCcCC
Confidence 99999997 4443 22 244788999999999995 777775 568899999999999998 455443
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-31 Score=281.85 Aligned_cols=439 Identities=14% Similarity=0.050 Sum_probs=253.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l 126 (543)
.++++|+++.|.+..... ..+..+++|+.|. +++|.+.+ +++ ..|.++++|++|++++|.++.. |..+..+
T Consensus 73 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~---L~~n~l~~-~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSD-KTFAFCTNLTELH---LMSNSIQK-IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred cCcCEEECCCCccCccCh-hhhccCCCCCEEE---CCCCccCc-cCh---hHccccCCCCEEECCCCcccccCchhhccc
Confidence 567788888777654432 3455556666654 77777664 221 2344777777777777776654 4456777
Q ss_pred ccccEEecCCCCccccchh-hh--cccccceeecCCCchhhhhh------------------------------------
Q 044382 127 RYLRYLNLSGTVIRTLPES-VN--KLYNLHTLLLEGCRRLKKLC------------------------------------ 167 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~-~~--~l~~L~~L~l~~~~~~~~l~------------------------------------ 167 (543)
++|++|++++|.++.++.. +. .+++|++|++++|......|
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 7777777777777666432 22 34667777766653221111
Q ss_pred ---------------HHHhhhcc--cceeecCCCCCccccccccccccccccccceEecCCCCCChhhhcccccccccee
Q 044382 168 ---------------ADMGNLIK--LHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLK 230 (543)
Q Consensus 168 ---------------~~~~~l~~--L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~ 230 (543)
..+..++. |++|++++|.+....|..++.+++|+.|++..+.... .....+..+..++ .+.
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~-~L~ 302 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVR-YLN 302 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCC-EEE
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc-cChhhhcCCCCcc-EEe
Confidence 22223322 5555555555222223445555555555443222111 1111222333333 333
Q ss_pred cccccCcC-----CccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEe----------
Q 044382 231 ISKLENIK-----DIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGIC---------- 295 (543)
Q Consensus 231 ~~~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~---------- 295 (543)
+....... .........+..+++|++|++++|.....++ ..+..+++|++|+++
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-----------NMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-----------TTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh-----------hHhccccCCcEEECCCCchhhhhcc
Confidence 32110000 0001111135566677777776665433221 123334444444444
Q ss_pred ------------------ccCCCCCC-CCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCcc
Q 044382 296 ------------------GYGGTKFP-TWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSK 354 (543)
Q Consensus 296 ------------------~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~ 354 (543)
++....++ ..+. .+++|+.|++++|...+.++ .+..+++|++|++++|. ++.+...
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 448 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN 448 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh
Confidence 44333221 1222 25555666665554433333 34555666666665553 2222211
Q ss_pred ccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCccc
Q 044382 355 FYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELSI 431 (543)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~ 431 (543)
. ...+++|+.|++.++.. .... ..+..+..+++|++|++++| ++++..+ ..+++|++|++.++.-...
T Consensus 449 ~-----~~~~~~L~~L~l~~n~l-~~~~--~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 449 S-----FALVPSLQRLMLRRVAL-KNVD--SSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp T-----TTTCTTCCEEECTTSCC-BCTT--CSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred h-----hhcCcccccchhccccc-cccc--cCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCcccc
Confidence 1 23467777777776432 2111 11122678999999999994 7873333 3467899999998864432
Q ss_pred -----------ccCCCCccceEEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 432 -----------SIASLPALCKMEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 432 -----------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
.+..+++|+.|++++|....++. .+..+++|++|++++ +.++.+|...+..+++|++|++++ ++++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~ 597 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLIT 597 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCC
Confidence 25668999999999998887765 578899999999999 588999998889999999999999 5899
Q ss_pred cccccCccccc-cCCccceEeeccCC
Q 044382 500 CIWKSHNELLQ-DICSLKRLLITSCP 524 (543)
Q Consensus 500 ~l~~~~~~~l~-~l~~L~~L~l~~c~ 524 (543)
.++ +..+. .+++|++|+++++|
T Consensus 598 ~~~---~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 598 SVE---KKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp BCC---HHHHHHHHTTCSEEECTTCC
T ss_pred ccC---hhHhcccccccCEEEccCCC
Confidence 886 44566 68999999999854
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.7e-31 Score=272.19 Aligned_cols=434 Identities=14% Similarity=0.120 Sum_probs=292.5
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSI 123 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~ 123 (543)
..++.++++|+++.|.+..... .++..+++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|..
T Consensus 17 ~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 17 KDLSQKTTILNISQNYISELWT-SDILSLSKLRILI---ISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp CSCCTTCSEEECCSSCCCCCCH-HHHTTCTTCCEEE---CCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccccccEEECCCCcccccCh-hhccccccccEEe---cCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc-
Confidence 4556889999999998876653 5677777777775 89998886 3344566899999999999999988876
Q ss_pred cCcccccEEecCCCCccc--cchhhhcccccceeecCCCchhhhhhHHHhhhccc--ceeecCCCCC--ccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL--HHLNDSNTDS--LEEMPLGIGKL 197 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L--~~L~l~~~~~--~~~lp~~l~~l 197 (543)
.+++|++|++++|.++. +|..++.+++|++|++++|. +.. ..+..+++| ++|++++|.+ ....|..+..+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence 89999999999999886 47889999999999999974 333 346778888 9999999985 45566666665
Q ss_pred cccccccceEecC--CCCCChhhhccccccccceeccccc---CcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 198 TCLQTLCNFVVGK--DSGSGLRELKSLIHLQGTLKISKLE---NIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 198 ~~L~~L~~~~~~~--~~~~~~~~l~~l~~l~~~L~~~~l~---~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
.. +.+.+..... ........+..+..++ .+.+.... .........+ .+..+++|+.|++..+... .
T Consensus 164 ~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~------~ 234 (520)
T 2z7x_B 164 NT-ESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT------W 234 (520)
T ss_dssp CE-EEEEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE------H
T ss_pred cc-ceEEEEeccCcchhhhhhhhhhccccee-eccccccccccccceeecchh-hhccccchhhccccccccC------H
Confidence 53 2332211111 1111111122333333 23222211 0011122222 4778889999999877641 0
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCC---CCCCCccEEEeecCCCCCCCC--CCCCC---Cccceeeec
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGD---SSFLNLVTLKFEDCGMCTALP--SVGQL---PSLKHLTVR 343 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~~l---~~L~~L~l~ 343 (543)
. ........ ...++|+.|+++++... .+|.++.. ..+++|+.+++++|.. .+| .+..+ ++|+.|+++
T Consensus 235 ~-~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 235 N-SFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp H-HHHHHHHH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred H-HHHHHHHH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 0 00111111 12468999999988755 66766521 2488899999988866 344 22222 569999998
Q ss_pred CccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC--CCC---CCCCCc
Q 044382 344 GMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG--TFP---EHLPAL 418 (543)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~lp---~~l~~L 418 (543)
+|.. ..+. . ...+++|++|+++++. +...... .++.+++|++|++++| ++++ .+| ..+++|
T Consensus 311 ~n~l-~~~~--~-----~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 311 GTRM-VHML--C-----PSKISPFLHLDFSNNL-LTDTVFE----NCGHLTELETLILQMN-QLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp SSCC-CCCC--C-----CSSCCCCCEEECCSSC-CCTTTTT----TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTC
T ss_pred CCcc-cccc--c-----hhhCCcccEEEeECCc-cChhhhh----hhccCCCCCEEEccCC-ccCccccchHHHhhCCCC
Confidence 8842 2211 0 2458899999999864 3332211 2578999999999995 6763 233 468899
Q ss_pred cEEEEecccCcc-c---ccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecc
Q 044382 419 EMLVIVECNELS-I---SIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKIN 493 (543)
Q Consensus 419 ~~L~l~~~~~l~-~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~ 493 (543)
++|++.++.... . .+..+++|+.|++++|.... .+..+ .++|++|++++| .++.+|...+ .+++|++|+++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~ 452 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVA 452 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECC
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEECCCC-cccccchhhh-cCCCCCEEECC
Confidence 999999886543 2 24557899999999998743 33333 279999999996 7888888744 89999999999
Q ss_pred cCCCCccccccCccccccCCccceEeeccCCC
Q 044382 494 NIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 494 ~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+| +++.++ +..+..+++|++|+++++|-
T Consensus 453 ~N-~l~~l~---~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 453 SN-QLKSVP---DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SS-CCCCCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CC-cCCccC---HHHhccCCcccEEECcCCCC
Confidence 94 788885 22488899999999999854
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=280.57 Aligned_cols=432 Identities=17% Similarity=0.129 Sum_probs=302.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCcc-
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDS- 122 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~- 122 (543)
.-..++++|+++.|.........++.++++|++|. +++|.+.+ ..+..|.++++|++|+|++|.++. +|..
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~---Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD---LGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE---CTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE---CCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 34578999999999653333236677777777775 99999886 335566699999999999999885 4554
Q ss_pred -ccCcccccEEecCCCCcccc--chhhhcccccceeecCCCchhhhhhHHHhhh--cccceeecCCCCCccccccccccc
Q 044382 123 -IGDLRYLRYLNLSGTVIRTL--PESVNKLYNLHTLLLEGCRRLKKLCADMGNL--IKLHHLNDSNTDSLEEMPLGIGKL 197 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~lp~~l~~l 197 (543)
|+++++|++|+|++|.++.+ +..++++++|++|++++|......+..+..+ ++|+.|++++|.+....|..++.+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 89999999999999999876 3578999999999999986555556667776 899999999999666677666666
Q ss_pred cc------cccccceEecCCCC--CChhh---------------------------------hccc--cccccceecccc
Q 044382 198 TC------LQTLCNFVVGKDSG--SGLRE---------------------------------LKSL--IHLQGTLKISKL 234 (543)
Q Consensus 198 ~~------L~~L~~~~~~~~~~--~~~~~---------------------------------l~~l--~~l~~~L~~~~l 234 (543)
.+ |+.|++..+..... ..+.. +..+ ..++ .+.+..
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~-~L~Ls~- 275 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-HLDLSH- 275 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-EEECTT-
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc-EEECCC-
Confidence 55 77776544421110 00000 0000 1222 222221
Q ss_pred cCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC-CCCCCCCCCCC
Q 044382 235 ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDSSFLN 313 (543)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~ 313 (543)
..........+..+++|+.|++++|..... ....+..+++|+.|++++|....+ +..+.. +++
T Consensus 276 ---n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 339 (844)
T 3j0a_A 276 ---GFVFSLNSRVFETLKDLKVLNLAYNKINKI-----------ADEAFYGLDNLQVLNLSYNLLGELYSSNFYG--LPK 339 (844)
T ss_dssp ---CCCCEECSCCSSSCCCCCEEEEESCCCCEE-----------CTTTTTTCSSCCEEEEESCCCSCCCSCSCSS--CTT
T ss_pred ---CcccccChhhhhcCCCCCEEECCCCcCCCC-----------ChHHhcCCCCCCEEECCCCCCCccCHHHhcC--CCC
Confidence 112222334578899999999998876322 123566788999999999987666 344544 889
Q ss_pred ccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc----------------
Q 044382 314 LVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ---------------- 376 (543)
Q Consensus 314 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------- 376 (543)
|+.|++++|......+ .+..+++|++|++++|. ++.+ ..+++|+.|.+.++.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i----------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTI----------HFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCC----------SSCCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcc----------cCCCCcchhccCCCCcccccccccccceeec
Confidence 9999999986544333 57889999999999884 3322 124555555555432
Q ss_pred ---cccccccCCCCCCCCCCCcccEEeeccCcCccCC----CCCCCCCccEEEEecccCcc--------cccCCCCccce
Q 044382 377 ---EWEEWIPHGSSQGVERFPKLRELHILRCSKLQGT----FPEHLPALEMLVIVECNELS--------ISIASLPALCK 441 (543)
Q Consensus 377 ---~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----lp~~l~~L~~L~l~~~~~l~--------~~~~~~~~L~~ 441 (543)
.++....... ...+++|++|++++| ++++. .+..+++|+.|++.++.... ..+..+++|+.
T Consensus 409 s~N~l~~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 409 SENRLENLDILYF---LLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp CSCCCCSSTTHHH---HTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred ccCccccCchhhh---hhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 1111111000 247899999999994 67632 23457899999999985431 23556899999
Q ss_pred EEEcCCCCeeee-cccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 442 MEIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 442 L~l~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
|++++|....++ ..+..+++|++|++++| .++.++...+. ++|+.|++++ ++++.+. |.. +.+|+.|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~-N~l~~~~---~~~---~~~L~~l~l 554 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISR-NQLLAPN---PDV---FVSLSVLDI 554 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEE-ECCCCCC---SCC---CSSCCEEEE
T ss_pred EECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCC-CcCCCCC---hhH---hCCcCEEEe
Confidence 999999776654 45788999999999995 88888887665 8999999999 6888775 333 468999999
Q ss_pred ccCCCC
Q 044382 521 TSCPKL 526 (543)
Q Consensus 521 ~~c~~l 526 (543)
+++|-.
T Consensus 555 ~~Np~~ 560 (844)
T 3j0a_A 555 THNKFI 560 (844)
T ss_dssp EEECCC
T ss_pred cCCCcc
Confidence 986543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1e-31 Score=283.72 Aligned_cols=418 Identities=14% Similarity=0.107 Sum_probs=270.9
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-------------cC---------------------cc
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-------------LP---------------------DS 122 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-------------lp---------------------~~ 122 (543)
.+..++++++.+.| .++++++++++|++|+|++|.+.. +| ..
T Consensus 82 ~V~~L~L~~~~l~g----~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASG----RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEE----EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCC----cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 44455699999998 666788899999999999995410 00 00
Q ss_pred cc-------------------CcccccEEecC--CCCccccchhhhcccccceeecCCCchhhh----------------
Q 044382 123 IG-------------------DLRYLRYLNLS--GTVIRTLPESVNKLYNLHTLLLEGCRRLKK---------------- 165 (543)
Q Consensus 123 ~~-------------------~l~~L~~L~L~--~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~---------------- 165 (543)
+. ....++.+.+. +|.++.+|..++++++|++|++++|...+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 00 00011111111 345555666666666666666666543232
Q ss_pred -hhHHHh--hhcccceeecCCCCCccccccccccccccccccceEecCCCC-CChhhhccc------cccccceeccccc
Q 044382 166 -LCADMG--NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SGLRELKSL------IHLQGTLKISKLE 235 (543)
Q Consensus 166 -l~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~-~~~~~l~~l------~~l~~~L~~~~l~ 235 (543)
+|..++ ++++|++|++++|.+.+.+|..++++++|+.|++..+....+ .....+..+ +.++ .+.+....
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCc
Confidence 666655 666666666666665566666666666666665443321111 112222222 4444 44443221
Q ss_pred CcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCC
Q 044382 236 NIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLN 313 (543)
Q Consensus 236 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 313 (543)
. . .++. .+..+++|++|++++|.... ..+ .+..+++|+.|++++|....+|..+.. +++
T Consensus 317 l----~-~ip~~~~l~~l~~L~~L~L~~N~l~g-----------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~ 377 (636)
T 4eco_A 317 L----K-TFPVETSLQKMKKLGMLECLYNQLEG-----------KLP-AFGSEIKLASLNLAYNQITEIPANFCG--FTE 377 (636)
T ss_dssp C----S-SCCCHHHHTTCTTCCEEECCSCCCEE-----------ECC-CCEEEEEESEEECCSSEEEECCTTSEE--ECT
T ss_pred C----C-ccCchhhhccCCCCCEEeCcCCcCcc-----------chh-hhCCCCCCCEEECCCCccccccHhhhh--hcc
Confidence 1 1 2222 47888999999998887520 111 556678999999999988788877765 778
Q ss_pred -ccEEEeecCCCCCCCC-CCCCC--CccceeeecCccceeeeCccccCC-CCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 314 -LVTLKFEDCGMCTALP-SVGQL--PSLKHLTVRGMSRVNRLGSKFYGD-DSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 314 -L~~L~l~~~~~~~~~~-~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
|++|++++|... .+| .+..+ ++|++|++++|.....++..+... .....+++|++|+++++. +..+.. ..
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~~-- 452 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPK-EL-- 452 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCT-HH--
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCH-HH--
Confidence 999999999765 666 45544 489999999985433222222100 001246799999999853 332221 11
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCC-CC----------CccEEEEecccCcc--cccC--CCCccceEEEcCCCCeeee
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEH-LP----------ALEMLVIVECNELS--ISIA--SLPALCKMEIGGCKKVVWR 453 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~-l~----------~L~~L~l~~~~~l~--~~~~--~~~~L~~L~l~~~~~~~~~ 453 (543)
...+++|++|++++ +.++ .+|.. +. +|+.|++.++.-.. ..+. .+++|+.|++++|....++
T Consensus 453 -~~~l~~L~~L~Ls~-N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 453 -FSTGSPLSSINLMG-NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp -HHTTCCCSEEECCS-SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred -HccCCCCCEEECCC-CCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 24589999999999 4787 77743 22 89999999885443 2343 6899999999999988888
Q ss_pred cccCCCCCCceEEEcC------CCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCc
Q 044382 454 SATDHLGSQNSVVCRD------TSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 454 ~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~ 527 (543)
..+..+++|++|++++ |.....+|.. +..+++|++|++++| +++.+| ..+. ++|++|++++|+ +.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~ip----~~~~--~~L~~L~Ls~N~-l~ 600 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSN-DIRKVN----EKIT--PNISVLDIKDNP-NI 600 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSS-CCCBCC----SCCC--TTCCEEECCSCT-TC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCC-cCCccC----HhHh--CcCCEEECcCCC-Cc
Confidence 8888999999999954 4345556665 788999999999995 679994 4444 899999999995 44
Q ss_pred ccchhhhH
Q 044382 528 SLVAEEEK 535 (543)
Q Consensus 528 ~~~~~~~~ 535 (543)
++......
T Consensus 601 ~~~~~~~~ 608 (636)
T 4eco_A 601 SIDLSYVC 608 (636)
T ss_dssp EEECTTTH
T ss_pred cccHHhcc
Confidence 55444333
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.7e-31 Score=282.08 Aligned_cols=417 Identities=13% Similarity=0.037 Sum_probs=264.7
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEe-cCCCcccc-Ccc--------------------------------
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSL-RGYHIYEL-PDS-------------------------------- 122 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~L-s~~~l~~l-p~~-------------------------------- 122 (543)
.+..+++++|.+.| .++++++++++|++|+| ++|.+... |..
T Consensus 324 ~V~~L~Ls~~~L~G----~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 324 RVTGLSLAGFGAKG----RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp CEEEEECTTTCCEE----EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CEEEEECccCCCCC----cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 45555699999998 66778889999999999 66643211 000
Q ss_pred -------------------ccCcccccEEecCC--CCccccchhhhcccccceeecCCCchhh-----------------
Q 044382 123 -------------------IGDLRYLRYLNLSG--TVIRTLPESVNKLYNLHTLLLEGCRRLK----------------- 164 (543)
Q Consensus 123 -------------------~~~l~~L~~L~L~~--~~i~~lp~~~~~l~~L~~L~l~~~~~~~----------------- 164 (543)
......++.+.+.. |.++.+|..++++++|++|++++|...+
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 00111122222222 4444556666666666666666653323
Q ss_pred hhhHHHh--hhcccceeecCCCCCccccccccccccccccccceEecCCCC-CChhhhcccc-------ccccceecccc
Q 044382 165 KLCADMG--NLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SGLRELKSLI-------HLQGTLKISKL 234 (543)
Q Consensus 165 ~l~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~-------~l~~~L~~~~l 234 (543)
.+|..++ ++++|++|++++|.+.+.+|..++++++|+.|++..+..... ..+..+..+. .++ .|.+...
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCC
Confidence 1555544 666666666666655555665566666666654433321111 1111122222 333 3333321
Q ss_pred cCcCCccchhhh--ccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 235 ENIKDIGDAKEA--RLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 235 ~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
.. . .++. .+..+++|+.|++++|.... +..+..+++|+.|++++|....+|..+.. ++
T Consensus 559 ~L----~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------------lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~ 618 (876)
T 4ecn_A 559 NL----E-EFPASASLQKMVKLGLLDCVHNKVRH-------------LEAFGTNVKLTDLKLDYNQIEEIPEDFCA--FT 618 (876)
T ss_dssp CC----C-BCCCHHHHTTCTTCCEEECTTSCCCB-------------CCCCCTTSEESEEECCSSCCSCCCTTSCE--EC
T ss_pred cC----C-ccCChhhhhcCCCCCEEECCCCCccc-------------chhhcCCCcceEEECcCCccccchHHHhh--cc
Confidence 11 1 2222 47888999999998887631 12667788999999999998888877765 77
Q ss_pred C-ccEEEeecCCCCCCCC-CCCCCC--ccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 313 N-LVTLKFEDCGMCTALP-SVGQLP--SLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 313 ~-L~~L~l~~~~~~~~~~-~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
+ |+.|++++|... .+| .+..++ +|+.|++++|.....++ .+.........++|+.|+++++. +..+.. ..
T Consensus 619 ~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~-~~-- 692 (876)
T 4ecn_A 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNE-IQKFPT-EL-- 692 (876)
T ss_dssp TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSC-CCSCCH-HH--
T ss_pred ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCc-CCccCH-HH--
Confidence 8 999999998765 666 455544 49999999885332221 11111012235689999999864 332221 11
Q ss_pred CCCCCCcccEEeeccCcCccCCCCCCC-----------CCccEEEEecccCcc--cccC--CCCccceEEEcCCCCeeee
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPEHL-----------PALEMLVIVECNELS--ISIA--SLPALCKMEIGGCKKVVWR 453 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~~l-----------~~L~~L~l~~~~~l~--~~~~--~~~~L~~L~l~~~~~~~~~ 453 (543)
...+++|+.|++++| .++ .+|..+ ++|+.|++.+|.-.. ..+. .+++|+.|+|++|....++
T Consensus 693 -~~~l~~L~~L~Ls~N-~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp 769 (876)
T 4ecn_A 693 -FATGSPISTIILSNN-LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP 769 (876)
T ss_dssp -HHTTCCCSEEECCSC-CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred -HccCCCCCEEECCCC-cCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc
Confidence 236899999999994 787 777432 289999999885432 2343 6899999999999888888
Q ss_pred cccCCCCCCceEEEcC------CCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCc
Q 044382 454 SATDHLGSQNSVVCRD------TSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQ 527 (543)
Q Consensus 454 ~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~ 527 (543)
..+..+++|++|++++ |.....+|.. +..+++|++|++++| .++.+| ..+. ++|+.|++++|+ +.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N-~L~~Ip----~~l~--~~L~~LdLs~N~-l~ 840 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSN-DIRKVD----EKLT--PQLYILDIADNP-NI 840 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSS-CCCBCC----SCCC--SSSCEEECCSCT-TC
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCC-CCCccC----Hhhc--CCCCEEECCCCC-CC
Confidence 8888999999999987 4334456655 788999999999995 679994 4444 799999999996 55
Q ss_pred ccchhhhHH
Q 044382 528 SLVAEEEKD 536 (543)
Q Consensus 528 ~~~~~~~~~ 536 (543)
.+......+
T Consensus 841 ~i~~~~~~~ 849 (876)
T 4ecn_A 841 SIDVTSVCP 849 (876)
T ss_dssp EEECGGGHH
T ss_pred ccChHHccc
Confidence 555444333
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.4e-29 Score=269.19 Aligned_cols=459 Identities=17% Similarity=0.124 Sum_probs=282.7
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..+|.++++|++++|.+..+.. .+|.++++|++|. +++|.+.+ +++.. |.++++|++|+|++|+++.+|.
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~---Ls~N~i~~-i~~~~---f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-ECTTT---TTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCCCcCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEE---CCCCcCCC-cChhH---hcCCCCCCEEEccCCcCCCCCHH
Confidence 45688899999999999977655 6677788888775 99999885 44444 4499999999999999999875
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTC 199 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 199 (543)
+|.++++|++|++++|.++.+|. .++.+++|++|++++|.... .+|..++.+++|++|++++|.+.+..|..+..+.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 58999999999999999999965 58999999999999985332 35677889999999999999943334455665555
Q ss_pred cccccceEecCC------CCCCh---------------------hhhcccccccc-ceecccccCcCCccchhhhccCCc
Q 044382 200 LQTLCNFVVGKD------SGSGL---------------------RELKSLIHLQG-TLKISKLENIKDIGDAKEARLDGK 251 (543)
Q Consensus 200 L~~L~~~~~~~~------~~~~~---------------------~~l~~l~~l~~-~L~~~~l~~~~~~~~~~~~~l~~~ 251 (543)
++.+.....-.. ..... ..+..+..++. .+..................+...
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 543321111000 00000 00111111110 011000001011111111112222
Q ss_pred cccceeeeeeecCCCCCCCccc--------------ccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEE
Q 044382 252 KNLKELSLNWTCSTDGLSSTEA--------------ETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTL 317 (543)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 317 (543)
..+....+..+........... .........+....+++.|.+.++....++.. .++.|+.+
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l 354 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRL 354 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc----cchhhhhc
Confidence 3333333322211000000000 00001112234455677777776654443322 24556666
Q ss_pred EeecCCCCCCCCCCCCCCccceeeecCccceeee--CccccC-----------------CCCCCCCCCcCeeeccCcccc
Q 044382 318 KFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRL--GSKFYG-----------------DDSPIPFPCLETLRFEDLQEW 378 (543)
Q Consensus 318 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~-----------------~~~~~~~~~L~~L~l~~~~~l 378 (543)
.+.++... ..+....+++|+.++++++...... ...... ......+++|+.+++..+...
T Consensus 355 ~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 355 TFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred ccccccCC-CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 66655432 2223345666666666655321110 000000 001234667777777665433
Q ss_pred cccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCcc----cccCCCCccceEEEcCCCCee
Q 044382 379 EEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELS----ISIASLPALCKMEIGGCKKVV 451 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~ 451 (543)
.... ... +..+++++.++++.+ .+++..+ ..+++++.|++.++.... ..+..+++|+.|+|++|....
T Consensus 434 ~~~~-~~~---~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 434 QMSE-FSV---FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp STTS-SCT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccc-ccc---ccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 2222 112 467888899999884 6664444 456789999998886443 345668999999999998876
Q ss_pred e-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccC-CccceEeeccCC
Q 044382 452 W-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI-CSLKRLLITSCP 524 (543)
Q Consensus 452 ~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l-~~L~~L~l~~c~ 524 (543)
+ +..+..+++|++|++++| .++.++...+..+++|++|++++ ++++.++ |..+..+ ++|++|+++++|
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~---~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSK---KQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-SCCCBCC---SSCTTCCCTTCCEEECTTCC
T ss_pred cChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-CcCCCCC---HHHHHhhhCcCCEEEeeCCC
Confidence 5 567888999999999995 88888887789999999999999 6888886 5578877 689999998753
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=268.99 Aligned_cols=406 Identities=18% Similarity=0.147 Sum_probs=292.8
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-ccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~ 124 (543)
-..++++|+++.|.+..... ..+.++++|++|. +++|.+.+ ++ +..|.++++|++|++++|.++.++. .++
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~---L~~n~l~~-~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLI---LTGNPIQS-LA---LGAFSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp TCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEE---CTTCCCCE-EC---TTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCCceEEECCCCcCCccCc-ccccCchhCCEEe---CcCCcCCc-cC---HhhhcCccccccccccccccccCCCcccc
Confidence 45789999999998866543 5677777888775 99998885 22 2355699999999999999998865 689
Q ss_pred CcccccEEecCCCCccc--cchhhhcccccceeecCCCchhhhhhHHHhhhccc----ceeecCCCCCcccccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKL----HHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L----~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
.+++|++|++++|.++. +|..++++++|++|++++|......+..++.+++| +.|++++|. +..++.+.....
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~ 200 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI 200 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccC
Confidence 99999999999999985 68999999999999999985444445668888888 899999998 555544322222
Q ss_pred ccccccceEecC---------------------------------CC------------------------CCChhhhcc
Q 044382 199 CLQTLCNFVVGK---------------------------------DS------------------------GSGLRELKS 221 (543)
Q Consensus 199 ~L~~L~~~~~~~---------------------------------~~------------------------~~~~~~l~~ 221 (543)
+|+.|++..... .. ......+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 555553221100 00 001111222
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK 301 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 301 (543)
++.++ .+.+..... ...+..+..+ +|++|+++++.....+ ...+++|+.|.+.++....
T Consensus 281 l~~L~-~L~l~~~~l-----~~l~~~~~~~-~L~~L~l~~n~~~~l~--------------~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 281 LTNVS-SFSLVSVTI-----ERVKDFSYNF-GWQHLELVNCKFGQFP--------------TLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp GTTCS-EEEEESCEE-----CSCCBCCSCC-CCSEEEEESCBCSSCC--------------BCBCSSCCEEEEESCBSCC
T ss_pred cCccc-EEEecCccc-----hhhhhhhccC-CccEEeeccCcccccC--------------cccccccCEEeCcCCcccc
Confidence 33333 333322111 1223336666 9999999988864222 1357899999999987544
Q ss_pred CCCCCCCCCCCCccEEEeecCCCCCCC--C-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccc
Q 044382 302 FPTWLGDSSFLNLVTLKFEDCGMCTAL--P-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEW 378 (543)
Q Consensus 302 ~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 378 (543)
.... ..+++|++|++++|...... + .+..+++|++|++++|. ++.+...+ ..+++|++|++.++. +
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~------~~l~~L~~L~l~~n~-l 408 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF------LGLEQLEHLDFQHSN-L 408 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEE------ETCTTCCEEECTTSE-E
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccc------cccCCCCEEEccCCc-c
Confidence 3322 35899999999998654332 2 56789999999999984 44444333 348999999999864 3
Q ss_pred cccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCc----ccccCCCCccceEEEcCCCCee
Q 044382 379 EEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNEL----SISIASLPALCKMEIGGCKKVV 451 (543)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l----~~~~~~~~~L~~L~l~~~~~~~ 451 (543)
........ +..+++|++|++++| .+++..|. .+++|++|++.+|... ...+..+++|+.|++++|....
T Consensus 409 ~~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 409 KQMSEFSV---FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp ESCTTSCT---TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred ccccchhh---hhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 33322222 578999999999996 66645653 5789999999998643 2456679999999999999877
Q ss_pred e-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCC
Q 044382 452 W-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQN 497 (543)
Q Consensus 452 ~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~ 497 (543)
. +..+..+++|++|++++| .++.++...+..+++|++|++++|+-
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 6 678889999999999996 78888877789999999999999643
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=267.38 Aligned_cols=438 Identities=15% Similarity=0.110 Sum_probs=305.6
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
-+++++++|.+..+. ..+. +++++| ++++|.+.+ ..+..|.++++|++|++++|.++.+ |..|+.+++
T Consensus 2 ~~~l~ls~n~l~~ip--~~~~--~~L~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVP--KDLS--QKTTIL---NISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CCEEECTTSCCSSCC--CSCC--TTCSEE---ECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred cceEecCCCCccccc--cccc--ccccEE---ECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 368899999886543 2222 566666 499999886 2234566899999999999999977 678999999
Q ss_pred ccEEecCCCCccccchhhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCcccccccccccccc--ccccc
Q 044382 129 LRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL--QTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~~ 205 (543)
|++|++++|.++++|.. .+++|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++| +.|++
T Consensus 71 L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEE
T ss_pred CCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEe
Confidence 99999999999999877 89999999999985443 367789999999999999999 443 346677777 88876
Q ss_pred eEecCC-CCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccC
Q 044382 206 FVVGKD-SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLK 284 (543)
Q Consensus 206 ~~~~~~-~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (543)
..+... .......+..+.. + .+.+ .+.............+..+++|+.+++++|.... ... .....+..+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~-~~~~~~~~l~ 217 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT-E-SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN----KCS-YFLSILAKLQ 217 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE-E-EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT----TTH-HHHHHHHGGG
T ss_pred eccccccccccccccccccc-c-eEEE-EeccCcchhhhhhhhhhcccceeecccccccccc----ccc-eeecchhhhc
Confidence 655431 1222333444332 1 1222 1111111122223346788999999998875210 001 1122344778
Q ss_pred CCCCCcEEEEeccCCCCC--CCCCCCCCCCCccEEEeecCCCCCCCC-CC-----CCCCccceeeecCccceeeeCcccc
Q 044382 285 PHKNLEQFGICGYGGTKF--PTWLGDSSFLNLVTLKFEDCGMCTALP-SV-----GQLPSLKHLTVRGMSRVNRLGSKFY 356 (543)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~~l~~~~~~~~ 356 (543)
.+++|+.|.+.++..... .........++|++|++++|...+.+| .+ +.+++|+.++++++.. .++....
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 899999999988754210 000000013589999999997765666 55 8899999999988743 2221110
Q ss_pred CCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC---CCCCCccEEEEecccCcc---
Q 044382 357 GDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP---EHLPALEMLVIVECNELS--- 430 (543)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~--- 430 (543)
.. ...-++|+.|+++++.. ..... ...+++|++|++++| .+++.+| ..+++|++|++.+|....
T Consensus 296 ~~--~~~~~~L~~L~l~~n~l-~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 296 YE--IFSNMNIKNFTVSGTRM-VHMLC------PSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp HH--HHHTCCCSEEEEESSCC-CCCCC------CSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred hc--ccccCceeEEEcCCCcc-ccccc------hhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 00 00125699999998642 22211 258999999999995 7876566 357789999999886553
Q ss_pred --cccCCCCccceEEEcCCCCee-eec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCc
Q 044382 431 --ISIASLPALCKMEIGGCKKVV-WRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHN 506 (543)
Q Consensus 431 --~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 506 (543)
..+..+++|+.|++++|.... ++. .+..+++|++|++++|..-..++.. +. ++|++|++++| +++.+ |
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N-~l~~i----p 437 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSN-KIKSI----P 437 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSS-CCCCC----C
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCC-ccccc----c
Confidence 236779999999999999876 665 4777899999999997443444443 22 79999999995 89988 5
Q ss_pred cccccCCccceEeeccCCCCcccchh
Q 044382 507 ELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 507 ~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
..+..+++|++|++++| +++.+|..
T Consensus 438 ~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 438 KQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp GGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred hhhhcCCCCCEEECCCC-cCCccCHH
Confidence 56779999999999999 78888764
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=9.1e-30 Score=265.63 Aligned_cols=420 Identities=18% Similarity=0.158 Sum_probs=265.6
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccchh-hhccc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPES-VNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~ 150 (543)
+.+++| ++++|.+.+ ..+..|.++++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|.. ++.++
T Consensus 26 ~~L~~L---~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSL---DLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEE---ECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEE---ECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 455555 488888775 22334558888888888888888764 5688888888999888888877554 88888
Q ss_pred ccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccc-cccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++|.... ..|..++++++|++|++++|..++.+| ..++.+++|++|++..+... ......+..++.++ .
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIH-H 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEE-E
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccccCc-e
Confidence 88888888874332 345567888888888888887666676 46888888888876544332 11223334444444 3
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCC-----CC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTK-----FP 303 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~ 303 (543)
+.+..... .......+..+++|++|++++|.....+.. .......+++|+.|.++++.... ++
T Consensus 177 L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 177 LTLHLSES----AFLLEIFADILSSVRYLELRDTNLARFQFS--------PLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp EEEECSBS----TTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------CCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred EecccCcc----cccchhhHhhcccccEEEccCCcccccccc--------ccchhhhhhcccceeccccccchhHHHHHH
Confidence 43322111 111111134567777777777765332110 00112335677777777664321 11
Q ss_pred CCCCCCCCCCccEEEeecCCCCC--CC-----CCCCCCCccceeeecCccceeeeCccccCCC-CCCCCCCcCeeeccCc
Q 044382 304 TWLGDSSFLNLVTLKFEDCGMCT--AL-----PSVGQLPSLKHLTVRGMSRVNRLGSKFYGDD-SPIPFPCLETLRFEDL 375 (543)
Q Consensus 304 ~~~~~~~l~~L~~L~l~~~~~~~--~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 375 (543)
..+. .+++|+.+++.+|...+ .+ ..+..+++|+.+.+.++..- ... .+.... ....+++|++|++.++
T Consensus 245 ~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 245 KLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFY-LFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp GGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGG-GSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHhh--hhccccccccccccccccccccccchhhhhhhcccccccccccccc-hhh-hcccchhhhhhcccceEEEeccC
Confidence 1112 25677778887775422 11 13456777888888766311 110 000000 0112467888888875
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC------CCCCCccEEEEecccCcc-----cccCCCCccceEEE
Q 044382 376 QEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP------EHLPALEMLVIVECNELS-----ISIASLPALCKMEI 444 (543)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp------~~l~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~l 444 (543)
. ++.+... . ...+++|++|++++| .+++.+| ..+++|++|++.+|.-.. ..+..+++|++|++
T Consensus 321 ~-l~~ip~~-~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 321 K-VFLVPCS-F---SQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp C-CCCCCHH-H---HHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred c-cccCCHH-H---HhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 3 3322211 1 136899999999995 6664432 467899999999986533 23667999999999
Q ss_pred cCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcC-----------------CCCCCccEEecccCCCCccccccCcc
Q 044382 445 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLK-----------------PRIPKLEELKINNIQNETCIWKSHNE 507 (543)
Q Consensus 445 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----------------~~~~~L~~L~l~~c~~l~~l~~~~~~ 507 (543)
++|....++..+..+++|++|++++| .++.++.... ..+++|++|++++ ++++.++ .
T Consensus 395 s~N~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip----~ 468 (549)
T 2z81_A 395 SRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLP----D 468 (549)
T ss_dssp TTCCCCCCCSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCC----C
T ss_pred CCCCCccCChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCC----C
Confidence 99988888888888999999999996 5766654421 2567777777777 3677773 2
Q ss_pred ccccCCccceEeeccCCCCcccch
Q 044382 508 LLQDICSLKRLLITSCPKLQSLVA 531 (543)
Q Consensus 508 ~l~~l~~L~~L~l~~c~~l~~~~~ 531 (543)
...+++|++|++++| +++.++.
T Consensus 469 -~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 469 -ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCCT
T ss_pred -cccCccCCEEecCCC-ccCCcCH
Confidence 345778888888877 5666554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=5e-29 Score=260.29 Aligned_cols=425 Identities=17% Similarity=0.168 Sum_probs=225.5
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
++++++++.+..+.. .+ .+++++| ++++|.+.+ + .+..|.++++|++|++++|.++.+ |..|.++++|
T Consensus 34 ~~l~ls~~~L~~ip~--~~--~~~L~~L---~Ls~N~i~~-~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK--DL--PPRTKAL---SLSQNSISE-L---RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CEEECTTSCCCSCCT--TS--CTTCCEE---ECCSSCCCC-C---CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cEEEcCCCCCccCCC--CC--CCCcCEE---ECCCCCccc-c---ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 556666555543221 11 1344444 356655553 1 112333566666666666665554 4445666666
Q ss_pred cEEecCCCCccccchhhhcccccceeecCCCchhhhh--hHHHhhhcccceeecCCCCCcccccccccccccc--ccccc
Q 044382 130 RYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL--QTLCN 205 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~~ 205 (543)
++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEe
Confidence 6666666666666554 56666666666653 3332 2445566666666666655 222 123333333 55443
Q ss_pred eEecCC-CCCChhhhcc--------------------------ccccccceecccccCcCCccchhhhccCCccccceee
Q 044382 206 FVVGKD-SGSGLRELKS--------------------------LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELS 258 (543)
Q Consensus 206 ~~~~~~-~~~~~~~l~~--------------------------l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 258 (543)
..+... .......+.. +..++ .+.+..-.............+..+++|+.++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEE
Confidence 333220 0111111222 12222 1111110000000001111244455555555
Q ss_pred eeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC-CCCCCCCC---CCCCCccEEEeecCCCCCCCC--CCC
Q 044382 259 LNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT-KFPTWLGD---SSFLNLVTLKFEDCGMCTALP--SVG 332 (543)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~ 332 (543)
+..+... .. ........ ...++|++|+++++... .+|..+.. ..++.|+.+++..+.. .+| .+.
T Consensus 256 L~~~~l~------~~-~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~ 325 (562)
T 3a79_B 256 LQHIETT------WK-CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY 325 (562)
T ss_dssp EEEEEEC------HH-HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred ecCCcCc------HH-HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence 5544431 00 00011111 12347888888887754 56655422 1244444444444332 222 111
Q ss_pred ---CCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccC
Q 044382 333 ---QLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG 409 (543)
Q Consensus 333 ---~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 409 (543)
..++|++|++++|.. .... . ...+++|++|+++++. +..... ..++.+++|++|++++ ++++
T Consensus 326 ~~~~~~~L~~L~l~~n~~-~~~~--~-----~~~l~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~L~~-N~l~- 390 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPF-IHMV--C-----PPSPSSFTFLNFTQNV-FTDSVF----QGCSTLKRLQTLILQR-NGLK- 390 (562)
T ss_dssp HHHHTCCCSEEEEESSCC-CCCC--C-----CSSCCCCCEEECCSSC-CCTTTT----TTCCSCSSCCEEECCS-SCCC-
T ss_pred hhhccCcceEEEccCCCc-cccc--C-----ccCCCCceEEECCCCc-cccchh----hhhcccCCCCEEECCC-CCcC-
Confidence 124578888877742 1111 0 1457888888888853 332211 1146788888888888 4676
Q ss_pred CCC------CCCCCccEEEEecccCcc-c---ccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCC
Q 044382 410 TFP------EHLPALEMLVIVECNELS-I---SIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSG 478 (543)
Q Consensus 410 ~lp------~~l~~L~~L~l~~~~~l~-~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~ 478 (543)
.++ ..+++|++|++.++.... . .+..+++|+.|++++|.... .+..+ .++|++|++++| .++.+|.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC--CTTCSEEECCSS-CCCCCCT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh--cCcCCEEECCCC-cCcccCh
Confidence 332 356788888888876443 1 24457889999999887643 22222 168999999995 7888888
Q ss_pred CcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 479 PLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 479 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
..+ .+++|++|++++ ++++.++ +..+..+++|++|+++++|=-
T Consensus 468 ~~~-~l~~L~~L~L~~-N~l~~l~---~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 468 DVT-HLQALQELNVAS-NQLKSVP---DGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTT-SSCCCSEEECCS-SCCCCCC---TTSTTTCTTCCCEECCSCCBC
T ss_pred hhc-CCCCCCEEECCC-CCCCCCC---HHHHhcCCCCCEEEecCCCcC
Confidence 754 889999999999 5788885 224888899999999988643
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.9e-28 Score=248.33 Aligned_cols=325 Identities=19% Similarity=0.232 Sum_probs=171.6
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++. ++.+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 3455666666666666665544 5666666666666666665544 566666666666665 3444443 5566666666
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++ .++.+++|+.|.+.. .. .... .+..+++|++|++
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~---~~~~-----------------------------~~~~l~~L~~L~l 184 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFGN-QV---TDLK-----------------------------PLANLTTLERLDI 184 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEEE-SC---CCCG-----------------------------GGTTCTTCCEEEC
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecCC-cc---cCch-----------------------------hhccCCCCCEEEC
Confidence 666665 44443 255555555553210 00 0000 0344455555555
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
++|.... ...+..+++|++|+++++.....+. +. .+++|+.|++++|.. ..++.+..+++|++
T Consensus 185 ~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 185 SSNKVSD-------------ISVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQL-KDIGTLASLTNLTD 247 (466)
T ss_dssp CSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred cCCcCCC-------------ChhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCCc-ccchhhhcCCCCCE
Confidence 5444321 1123445555555555555443332 22 255566666655533 23344455566666
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC-CCCCCc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP-EHLPAL 418 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L 418 (543)
|++++|. ++.... ...+++|++|+++++. +..... ...+++|++|++++| .+++..+ ..+++|
T Consensus 248 L~l~~n~-l~~~~~-------~~~l~~L~~L~l~~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 248 LDLANNQ-ISNLAP-------LSGLTKLTELKLGANQ-ISNISP------LAGLTALTNLELNEN-QLEDISPISNLKNL 311 (466)
T ss_dssp EECCSSC-CCCCGG-------GTTCTTCSEEECCSSC-CCCCGG------GTTCTTCSEEECCSS-CCSCCGGGGGCTTC
T ss_pred EECCCCc-cccchh-------hhcCCCCCEEECCCCc-cCcccc------ccCCCccCeEEcCCC-cccCchhhcCCCCC
Confidence 6665552 221111 2235556666665532 222111 245666666666663 4442211 344555
Q ss_pred cEEEEecccCccc-ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCC
Q 044382 419 EMLVIVECNELSI-SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQN 497 (543)
Q Consensus 419 ~~L~l~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~ 497 (543)
+.|++.+|..... .+..+++|+.|++++|....+ ..+..+++|++|++++| .+..+++ +..+++|++|++++| .
T Consensus 312 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n-~ 386 (466)
T 1o6v_A 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ-A 386 (466)
T ss_dssp SEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCE-E
T ss_pred CEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCC-c
Confidence 5555555532221 244577788888888766554 45666888888888886 4454443 567788888888884 5
Q ss_pred Cccc
Q 044382 498 ETCI 501 (543)
Q Consensus 498 l~~l 501 (543)
++.+
T Consensus 387 ~~~~ 390 (466)
T 1o6v_A 387 WTNA 390 (466)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5555
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.8e-28 Score=253.64 Aligned_cols=409 Identities=16% Similarity=0.089 Sum_probs=278.4
Q ss_pred eecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCcccc-chhhhcccccceee
Q 044382 79 LPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLL 156 (543)
Q Consensus 79 ~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~ 156 (543)
..+++++|.+.+ +|..++ ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 34 ~~l~ls~~~L~~-ip~~~~------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCcc-CCCCCC------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 344699999885 555554 58999999999999886 5799999999999999999988 67799999999999
Q ss_pred cCCCchhhhhhHHHhhhcccceeecCCCCCcccc--ccccccccccccccceEecCCCCCChhhhccccccccceecccc
Q 044382 157 LEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEM--PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKL 234 (543)
Q Consensus 157 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l 234 (543)
+++| .+..+|.. .+++|++|++++|. +..+ |..++.+++|+.|++..+.... ..+..+.++ .++ .+.+...
T Consensus 107 Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~-~L~L~~n 179 (562)
T 3a79_B 107 VSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS-CILLDLV 179 (562)
T ss_dssp CTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE-EEEEEES
T ss_pred CCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee-EEEeecc
Confidence 9998 56688875 89999999999999 6654 4689999999999876654432 334444444 223 3333221
Q ss_pred cC--cCCcc----------------------chhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCc
Q 044382 235 EN--IKDIG----------------------DAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLE 290 (543)
Q Consensus 235 ~~--~~~~~----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 290 (543)
.. ..... ......+..+++|+.+++++|... -..-......+...+.++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-------~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-------CQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-------HHHHHHHHHHHHSCSSCE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc-------cchHHHHHHHHhccCcce
Confidence 11 00000 001112445677778887765320 001122334556677888
Q ss_pred EEEEeccCCCC-----CCCCCCCCCCCCccEEEeecCCCCCCCC-CC-----CCCCccceeeecCccceeeeCccccCCC
Q 044382 291 QFGICGYGGTK-----FPTWLGDSSFLNLVTLKFEDCGMCTALP-SV-----GQLPSLKHLTVRGMSRVNRLGSKFYGDD 359 (543)
Q Consensus 291 ~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 359 (543)
.+.+.++.... ++.+.. .++|++|++++|...+.+| .+ ..++.|+.+++..+.. .++......
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~- 326 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS- 326 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH-
T ss_pred EEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh-
Confidence 88887664321 112221 3489999999997765666 33 4455555554444321 111000000
Q ss_pred CCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcc-----c
Q 044382 360 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELS-----I 431 (543)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~-----~ 431 (543)
....++|++|++.++.. ..... ...+++|++|++++| .+++.+|. .+++|++|++.++.-.. .
T Consensus 327 -~~~~~~L~~L~l~~n~~-~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 327 -VFAEMNIKMLSISDTPF-IHMVC------PPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp -HHHTCCCSEEEEESSCC-CCCCC------CSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred -hhccCcceEEEccCCCc-ccccC------ccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 01125699999998642 22111 257899999999995 78766664 56789999999875443 2
Q ss_pred ccCCCCccceEEEcCCCCee-eec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccc
Q 044382 432 SIASLPALCKMEIGGCKKVV-WRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELL 509 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 509 (543)
.+..+++|+.|++++|.... ++. .+..+++|++|++++|..-..++.. +. ++|++|++++| +++.+ |..+
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N-~l~~i----p~~~ 469 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNN-RIMSI----PKDV 469 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSS-CCCCC----CTTT
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCC-cCccc----Chhh
Confidence 36679999999999999876 554 4778999999999997433334432 22 79999999995 89999 4556
Q ss_pred ccCCccceEeeccCCCCcccchh
Q 044382 510 QDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 510 ~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
..+++|++|++++| +++.+|..
T Consensus 470 ~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 470 THLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp TSSCCCSEEECCSS-CCCCCCTT
T ss_pred cCCCCCCEEECCCC-CCCCCCHH
Confidence 68999999999998 68888764
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=8.5e-28 Score=242.72 Aligned_cols=371 Identities=17% Similarity=0.118 Sum_probs=199.5
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCee-------------eEEEecC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRL-------------RVFSLRG 113 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L-------------~~L~Ls~ 113 (543)
...+++++++.|.+..+ ..++.++++|+ .+++++|.+.+ .+|..++++.+| ++|++++
T Consensus 10 ~~~L~~L~l~~n~l~~i--P~~i~~L~~L~---~L~l~~n~~~~----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM--PVEAENVKSKT---EYYNAWSEWER----NAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp --------------------------CCHH---HHHHHHHHHHH----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCchhhC--ChhHhcccchh---hhhccCCcccc----cCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 46788999999887322 13444444444 45688888887 555666667664 9999999
Q ss_pred CCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccc
Q 044382 114 YHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLG 193 (543)
Q Consensus 114 ~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 193 (543)
|.++.+|.. .++|++|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++|. +..+| .
T Consensus 81 ~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~ 148 (454)
T 1jl5_A 81 LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-E 148 (454)
T ss_dssp SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC-C
T ss_pred CccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc-c
Confidence 999888763 47899999999999988864 478999999987 45444431 2689999999998 66687 5
Q ss_pred cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc
Q 044382 194 IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273 (543)
Q Consensus 194 l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (543)
++.+++|+.|++..+.... ++. ...+|++|++++|..+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~------lp~----------------------------~~~~L~~L~L~~n~l~~------- 187 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK------LPD----------------------------LPPSLEFIAAGNNQLEE------- 187 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC------CCC----------------------------CCTTCCEEECCSSCCSS-------
T ss_pred cCCCCCCCEEECCCCcCcc------cCC----------------------------CcccccEEECcCCcCCc-------
Confidence 8888888888654332111 000 01256666665555421
Q ss_pred ccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCc
Q 044382 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGS 353 (543)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 353 (543)
+..+..+++|+.|++++|....+|.. .++|++|++++|... .++.++.+++|++|++++|. ++.++
T Consensus 188 ------l~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~- 253 (454)
T 1jl5_A 188 ------LPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLP- 253 (454)
T ss_dssp ------CCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCC-
T ss_pred ------CccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCccc-
Confidence 12345566666666666655544432 235666666666443 45556666666666666652 22221
Q ss_pred cccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCccccc
Q 044382 354 KFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISI 433 (543)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~ 433 (543)
..+++|++|+++++. ++.+. ..+++|++|++++| .++ .+|...++|+.|++.++.-.. +
T Consensus 254 --------~~~~~L~~L~l~~N~-l~~l~--------~~~~~L~~L~ls~N-~l~-~l~~~~~~L~~L~l~~N~l~~--i 312 (454)
T 1jl5_A 254 --------DLPPSLEALNVRDNY-LTDLP--------ELPQSLTFLDVSEN-IFS-GLSELPPNLYYLNASSNEIRS--L 312 (454)
T ss_dssp --------SCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCS-EESCCCTTCCEEECCSSCCSE--E
T ss_pred --------ccccccCEEECCCCc-ccccC--------cccCcCCEEECcCC-ccC-cccCcCCcCCEEECcCCcCCc--c
Confidence 123566666666542 22211 12456666666663 555 344333566666666554332 2
Q ss_pred CC-CCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccC
Q 044382 434 AS-LPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 512 (543)
Q Consensus 434 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l 512 (543)
+. +++|+.|++++|....++.. +++|++|++++| .++.+|. .+++|++|++++ +.++.++.. |..+..+
T Consensus 313 ~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~-N~l~~l~~i-p~~l~~L 382 (454)
T 1jl5_A 313 CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPE----LPQNLKQLHVEY-NPLREFPDI-PESVEDL 382 (454)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSSCCCC-CTTCCEE
T ss_pred cCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccc----hhhhccEEECCC-CCCCcCCCC-hHHHHhh
Confidence 22 24666666666655544333 466666777664 5555554 256666777766 345543322 4455555
Q ss_pred -------------CccceEeeccCC
Q 044382 513 -------------CSLKRLLITSCP 524 (543)
Q Consensus 513 -------------~~L~~L~l~~c~ 524 (543)
++|++|++++++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ECCC---------------------
T ss_pred hhcccccccccccCcCCEEECCCCc
Confidence 667777776663
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.4e-27 Score=243.03 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccccc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~ 124 (543)
++.++++|++++|.+..... ..+.++++|++|. +++|.+.+.++...+. ++++|++|++++|.++.+ |..|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLK---VEQQTPGLVIRNNTFR---GLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEE---CCCCSTTCEECTTTTT---TCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcCCh-hHhccCccccEEE---CcCCcccceECccccc---ccccCCEEeCCCCccCccChhhcc
Confidence 55666666666666544322 3444455555553 6666555433333333 666666666666666544 45566
Q ss_pred CcccccEEecCCCCccc-cchh--hhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCccccccccc
Q 044382 125 DLRYLRYLNLSGTVIRT-LPES--VNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIG 195 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~ 195 (543)
++++|++|++++|.++. .|.. +..+++|++|++++|......|.. ++++++|++|++++|.+....|..+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 66666666666666653 2332 556666666666665332322433 55666666666666663333333343
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.4e-26 Score=234.04 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=86.4
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 283 LKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
+..+++|+.|++++|....+| +. .+++|+.|++++|...+ ++ ++.+++|+.|++++
T Consensus 208 l~~l~~L~~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~------------------ 263 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQ------------------ 263 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTT------------------
T ss_pred cccCCCCCEEECcCCcccccC--cc--ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccC------------------
Confidence 334455555555555544443 22 24555555555553322 11 33444555554432
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceE
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKM 442 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 442 (543)
.+|+.|+++++.....+. .+.+++|+.|++++|..+. .+|...++|+.|++.+ .++|+.|
T Consensus 264 --n~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~----------~~~L~~L 323 (457)
T 3bz5_A 264 --TDLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQ----------NPKLVYL 323 (457)
T ss_dssp --CCCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTT----------CTTCCEE
T ss_pred --CCCCEEECCCCccCCccc-------ccccccCCEEECCCCcccc-eeccCCCcceEechhh----------cccCCEE
Confidence 245566666655444332 2568889999999875554 7776666777665443 4678888
Q ss_pred EEcCCCCeeeecccCCCCCCceEEEcCCCCCcc
Q 044382 443 EIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 443 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
++++|....+ .+..+++|++|++++| .++.
T Consensus 324 ~L~~N~l~~l--~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 324 YLNNTELTEL--DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp ECTTCCCSCC--CCTTCTTCSEEECCSS-CCCB
T ss_pred ECCCCccccc--ccccCCcCcEEECCCC-CCCC
Confidence 8888877665 3677888888888884 5554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.9e-26 Score=232.61 Aligned_cols=347 Identities=19% Similarity=0.211 Sum_probs=239.5
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..+++.|++..+.+... ..+..+++|++|. +++|.+.+. ++ +.++++|++|++++|.+..++. +.++
T Consensus 45 l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~---Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI---DGVEYLNNLTQIN---FSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hccccEEecCCCCCccC---cchhhhcCCCEEE---CCCCccCCc-----hh-hhccccCCEEECCCCccccChh-hcCC
Confidence 36799999999887543 3455677777775 999988852 22 6699999999999999998876 9999
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++.+ . ...++. ++.+++|+.|++.
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC-c-ccCchh-hccCCCCCEEECc
Confidence 999999999999999876 899999999999997 4666664 88999999999964 3 333333 7788888888643
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPH 286 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (543)
.+.... +. .+..+++|++|++++|..... ..+..+
T Consensus 186 ~n~l~~---~~-----------------------------~l~~l~~L~~L~l~~n~l~~~-------------~~~~~l 220 (466)
T 1o6v_A 186 SNKVSD---IS-----------------------------VLAKLTNLESLIATNNQISDI-------------TPLGIL 220 (466)
T ss_dssp SSCCCC---CG-----------------------------GGGGCTTCSEEECCSSCCCCC-------------GGGGGC
T ss_pred CCcCCC---Ch-----------------------------hhccCCCCCEEEecCCccccc-------------cccccc
Confidence 322111 01 144556677777766654211 113446
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPC 366 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 366 (543)
++|+.|+++++....++. +. .+++|++|++++|.... ++.+..+++|++|++++|. ++.+.. ...+++
T Consensus 221 ~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~l~~ 288 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGT-LA--SLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQ-ISNISP-------LAGLTA 288 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CCCCGG-------GTTCTT
T ss_pred CCCCEEECCCCCcccchh-hh--cCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCc-cCcccc-------ccCCCc
Confidence 677777777766555432 22 26677777777765433 3336667777777777763 222221 234677
Q ss_pred cCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCC-CCCCCccEEEEecccCcc-cccCCCCccceEEE
Q 044382 367 LETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIVECNELS-ISIASLPALCKMEI 444 (543)
Q Consensus 367 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~-~~~~~~~~L~~L~l 444 (543)
|+.|+++++. +..+.. .+.+++|++|++++| .+++..| ..+++|++|++.+|.... ..+..+++|+.|++
T Consensus 289 L~~L~L~~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISP------ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360 (466)
T ss_dssp CSEEECCSSC-CSCCGG------GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred cCeEEcCCCc-ccCchh------hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeC
Confidence 7777777643 333222 356777888888775 5653333 456778888887774332 24566899999999
Q ss_pred cCCCCeeeecccCCCCCCceEEEcCCCCCcccCCC
Q 044382 445 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGP 479 (543)
Q Consensus 445 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 479 (543)
++|....... +..+++|++|++++| .++.+|..
T Consensus 361 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 361 GHNQISDLTP-LANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp CSSCCCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred CCCccCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence 9998876655 788999999999996 56665544
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1e-26 Score=235.06 Aligned_cols=317 Identities=18% Similarity=0.164 Sum_probs=214.1
Q ss_pred hhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhh
Q 044382 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVN 147 (543)
Q Consensus 68 ~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~ 147 (543)
.+.++++|++|. +++|.+.+. +.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++
T Consensus 37 ~~~~l~~L~~L~---Ls~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLD---CHNSSITDM------TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EHHHHTTCCEEE---CCSSCCCCC------TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ChhHcCCCCEEE---ccCCCcccC------hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 344556666664 777777751 24557788888888888877765 777888888888888877775 67
Q ss_pred cccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhcccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG 227 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~ 227 (543)
.+++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++.+++|+.|++..+.
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~------------------ 159 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK------------------ 159 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS------------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC------------------
Confidence 7888888888876 444454 6778888888888877 55443 5566666665432110
Q ss_pred ceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCC
Q 044382 228 TLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307 (543)
Q Consensus 228 ~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
..... .+..+++|++|++++|..+.. .+..+++|+.|.++++....++ +.
T Consensus 160 --------~~~~~------~~~~l~~L~~L~ls~n~l~~l--------------~l~~l~~L~~L~l~~N~l~~~~--l~ 209 (457)
T 3bz5_A 160 --------KITKL------DVTPQTQLTTLDCSFNKITEL--------------DVSQNKLLNRLNCDTNNITKLD--LN 209 (457)
T ss_dssp --------CCCCC------CCTTCTTCCEEECCSSCCCCC--------------CCTTCTTCCEEECCSSCCSCCC--CT
T ss_pred --------ccccc------ccccCCcCCEEECCCCcccee--------------ccccCCCCCEEECcCCcCCeec--cc
Confidence 00000 155677888888877765321 1556778888888888766553 33
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC
Q 044382 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS 387 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 387 (543)
.+++|+.|++++|...+ ++ ++.+++|++|++++|. ++.++ ...+++|+.|++..
T Consensus 210 --~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~~------------- 263 (457)
T 3bz5_A 210 --QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCIQ------------- 263 (457)
T ss_dssp --TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECTT-------------
T ss_pred --cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEeccC-------------
Confidence 37788888888876544 55 7778888888888773 33222 23466777776543
Q ss_pred CCCCCCCcccEEeeccCcCccCCCC-CCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEE
Q 044382 388 QGVERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVV 466 (543)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 466 (543)
.+|+.|++++|..+ +.+| ..+++|+.|++.+|..+.......++|+.|++++ +++|++|+
T Consensus 264 ------n~L~~L~l~~n~~~-~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~------------~~~L~~L~ 324 (457)
T 3bz5_A 264 ------TDLLEIDLTHNTQL-IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ------------NPKLVYLY 324 (457)
T ss_dssp ------CCCSCCCCTTCTTC-CEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT------------CTTCCEEE
T ss_pred ------CCCCEEECCCCccC-CcccccccccCCEEECCCCcccceeccCCCcceEechhh------------cccCCEEE
Confidence 25677788886433 3555 4567888888888876654444456666665554 47899999
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
+++| .++.++ +..+++|+.|++++ ++++.+
T Consensus 325 L~~N-~l~~l~---l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 325 LNNT-ELTELD---VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp CTTC-CCSCCC---CTTCTTCSEEECCS-SCCCBC
T ss_pred CCCC-cccccc---cccCCcCcEEECCC-CCCCCc
Confidence 9995 777774 78899999999999 677765
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.5e-25 Score=238.03 Aligned_cols=430 Identities=19% Similarity=0.167 Sum_probs=268.6
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccch-hhhcccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYN 151 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~ 151 (543)
.+++| ++++|.+.+ +++. +|.++++|++|+|++|.++.+|+ +|.++++|++|+|++|.++.+|. .+.++++
T Consensus 53 ~~~~L---dLs~N~i~~-l~~~---~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNL---DLSFNPLRH-LGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEE---ECTTSCCCE-ECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEE---EeeCCCCCC-CCHH---HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 45665 599999985 3333 45599999999999999998865 69999999999999999999975 5789999
Q ss_pred cceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccc--cccccccccccccccceEecCCC--CCChhhhccccccc
Q 044382 152 LHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDS--GSGLRELKSLIHLQ 226 (543)
Q Consensus 152 L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~~~~~~~~~--~~~~~~l~~l~~l~ 226 (543)
|++|++++| .+..+|. .++++++|++|++++|. +.. +|..++.+++|++|++..+.... ...+..+.++....
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999998 5666664 48899999999999999 543 56778899999999765443221 12233333322211
Q ss_pred cceecc--cc------------------cCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc---ccH-------
Q 044382 227 GTLKIS--KL------------------ENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA---ETE------- 276 (543)
Q Consensus 227 ~~L~~~--~l------------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~------- 276 (543)
..+.+. .. .............+..+..++...+..+........... ...
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 011110 00 000001112222345556666666654433211110000 000
Q ss_pred ------------HHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecC
Q 044382 277 ------------KDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRG 344 (543)
Q Consensus 277 ------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 344 (543)
......+....+++.+.+.++....+... . ....++.|++.+|.... ++ ...++.|+.+.+.+
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~--~~~~L~~L~l~~~~~~~-~~-~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-S--YNFGWQHLELVNCKFGQ-FP-TLKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-G--SCCCCSEEEEESCEESS-CC-CCBCTTCCEEEEES
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccccc-c--cchhhhhhhcccccccC-cC-cccchhhhhccccc
Confidence 00001122234555555555443333221 1 24567777777764422 22 22456777777766
Q ss_pred ccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccC--------------------CCCCCCCCCCcccEEeeccC
Q 044382 345 MSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPH--------------------GSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~~~~~~L~~L~l~~c 404 (543)
+....... ...+++|+.|+++.+......... ........+++|+.+++.++
T Consensus 359 n~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 359 NKGGNAFS--------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp CCSCCBCC--------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred ccCCCCcc--------cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence 53221111 234677777777654321100000 00111446677777777775
Q ss_pred cCccCCCC----CCCCCccEEEEecccCcc---cccCCCCccceEEEcCCCCee--eecccCCCCCCceEEEcCCCCCcc
Q 044382 405 SKLQGTFP----EHLPALEMLVIVECNELS---ISIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVF 475 (543)
Q Consensus 405 ~~l~~~lp----~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~ 475 (543)
+... ..+ ..+.+++.+++..+.... ..+..+++++.|++++|.... .+..+..+++|++|++++| .++.
T Consensus 431 ~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~ 508 (635)
T 4g8a_A 431 NLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 508 (635)
T ss_dssp EEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCE
T ss_pred cccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCC
Confidence 4333 322 245567777776654332 234458899999999997543 6678889999999999996 8888
Q ss_pred cCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcccchh
Q 044382 476 LSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQSLVAE 532 (543)
Q Consensus 476 l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 532 (543)
+++..|..+++|++|++++ ++++.++ |..+..+++|++|+++++ +++.++..
T Consensus 509 l~~~~f~~l~~L~~L~Ls~-N~l~~l~---~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 560 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSH-NNFFSLD---TFPYKCLNSLQVLDYSLN-HIMTSKKQ 560 (635)
T ss_dssp ECTTTTTTCTTCCEEECTT-SCCCBCC---CGGGTTCTTCCEEECTTS-CCCBCCSS
T ss_pred cChHHHcCCCCCCEEECCC-CcCCCCC---hhHHhCCCCCCEEECCCC-cCCCCCHH
Confidence 8877799999999999999 5899997 558999999999999998 56665543
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2e-26 Score=225.76 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCC
Q 044382 434 ASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 513 (543)
Q Consensus 434 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~ 513 (543)
..+++|+.|++++|....+ ..+..+++|++|++++| .++..+...+..+++|++|++++| .++.++ | +..++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~---~--~~~l~ 333 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIR---P--LASLS 333 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCG---G--GGGCT
T ss_pred hcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-cccccc---C--hhhhh
Confidence 3455666666666654444 34556777888888875 455555444677788888888885 466663 2 66778
Q ss_pred ccceEeeccCC
Q 044382 514 SLKRLLITSCP 524 (543)
Q Consensus 514 ~L~~L~l~~c~ 524 (543)
+|++|++++|+
T Consensus 334 ~L~~L~l~~N~ 344 (347)
T 4fmz_A 334 KMDSADFANQV 344 (347)
T ss_dssp TCSEESSSCC-
T ss_pred ccceeehhhhc
Confidence 88888888774
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2e-25 Score=222.22 Aligned_cols=302 Identities=15% Similarity=0.154 Sum_probs=152.4
Q ss_pred cCCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhh-hHHHhhhcccce
Q 044382 102 KLQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHH 178 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~ 178 (543)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.++ ..+..+++|++|++++|. +..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 345666666666666666544 456666666666666666553 355666666666666653 3333 333556666666
Q ss_pred eecCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCcccccee
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKEL 257 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L 257 (543)
|++++|. +..+|.. ++.+++|++|++..+.. .......+..+++|++|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l------------------------------~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL------------------------------ERIEDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------CBCCTTTTSSCTTCCEE
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc------------------------------CccChhhccCCCCCCEE
Confidence 6666666 5555544 35555555553221100 00001115556677777
Q ss_pred eeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCcc
Q 044382 258 SLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSL 337 (543)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 337 (543)
++++|..+.. .+..+++|+.++++++....++ ..++|++|++++|.... ++. ...++|
T Consensus 171 ~l~~n~l~~~--------------~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~-~~~-~~~~~L 228 (390)
T 3o6n_A 171 QLSSNRLTHV--------------DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINV-VRG-PVNVEL 228 (390)
T ss_dssp ECCSSCCSBC--------------CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCE-EEC-CCCSSC
T ss_pred ECCCCcCCcc--------------ccccccccceeecccccccccC------CCCcceEEECCCCeeee-ccc-cccccc
Confidence 7766654211 1233556666666655443221 13355556665553321 111 123455
Q ss_pred ceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---C
Q 044382 338 KHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---H 414 (543)
Q Consensus 338 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~ 414 (543)
++|++++|. ++.. . . +..+++|++|++++| .+++..|. .
T Consensus 229 ~~L~l~~n~-l~~~------------------------------~---~---l~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 270 (390)
T 3o6n_A 229 TILKLQHNN-LTDT------------------------------A---W---LLNYPGLVEVDLSYN-ELEKIMYHPFVK 270 (390)
T ss_dssp CEEECCSSC-CCCC------------------------------G---G---GGGCTTCSEEECCSS-CCCEEESGGGTT
T ss_pred cEEECCCCC-Cccc------------------------------H---H---HcCCCCccEEECCCC-cCCCcChhHccc
Confidence 555555542 1111 0 0 234455555555552 33322221 1
Q ss_pred CCCccEEEEecccCcc--cccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEec
Q 044382 415 LPALEMLVIVECNELS--ISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKI 492 (543)
Q Consensus 415 l~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l 492 (543)
+++|++|++.++.... .....+++|+.|++++|....++..+..+++|++|++++| .++.++ +..+++|++|++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEEC
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC---chhhccCCEEEc
Confidence 2233333333322111 1223466777777777766666666666777777777774 455554 456677777777
Q ss_pred ccCCCCcc
Q 044382 493 NNIQNETC 500 (543)
Q Consensus 493 ~~c~~l~~ 500 (543)
+++ .++.
T Consensus 347 ~~N-~~~~ 353 (390)
T 3o6n_A 347 SHN-DWDC 353 (390)
T ss_dssp CSS-CEEH
T ss_pred CCC-Cccc
Confidence 773 4443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=221.87 Aligned_cols=311 Identities=19% Similarity=0.179 Sum_probs=194.9
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCcccc-chhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ .+++|+|++|.++.+ +..|.++++|++|+|++|.++.+ |..+..+++|++|++++
T Consensus 17 ~c~~~~l~~-ip~~~~~------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 17 LCHRKRFVA-VPEGIPT------ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp ECCSCCCSS-CCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeCCCCcCc-CCCCCCC------CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 366666653 4444443 677888888887766 45678888888888888887766 66777788888888877
Q ss_pred CchhhhhhHH-HhhhcccceeecCCCCCcccc-ccccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|.. ++++++|++|++++|. +..+ |..
T Consensus 90 n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-------------------------------------------- 123 (477)
T 2id5_A 90 N-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYM-------------------------------------------- 123 (477)
T ss_dssp S-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTT--------------------------------------------
T ss_pred C-cCCccCcccccCCCCCCEEECCCCc-cccCChhH--------------------------------------------
Confidence 6 45555543 5677777777777776 3222 111
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCC-CCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~ 316 (543)
+..+++|++|++++|..... ....+..+++|+.|+++++....++.. +. .+++|+.
T Consensus 124 ----------~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~ 180 (477)
T 2id5_A 124 ----------FQDLYNLKSLEVGDNDLVYI-----------SHRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIV 180 (477)
T ss_dssp ----------TTTCTTCCEEEECCTTCCEE-----------CTTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCE
T ss_pred ----------ccccccCCEEECCCCcccee-----------ChhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcE
Confidence 44456666677665554211 123455677888888888776665542 33 3677888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPK 395 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 395 (543)
|++++|......+ .+..+++|++|++++|..+..+..... ...+|++|++.++ .++.+.... +..+++
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~n-~l~~~~~~~----~~~l~~ 249 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL------YGLNLTSLSITHC-NLTAVPYLA----VRHLVY 249 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT------TTCCCSEEEEESS-CCCSCCHHH----HTTCTT
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc------cCccccEEECcCC-cccccCHHH----hcCccc
Confidence 8888775544333 566777777777777765555443321 1335666666553 222221100 234556
Q ss_pred ccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeee-ecccCCCCCCceEEEcCCCCCc
Q 044382 396 LRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQV 474 (543)
Q Consensus 396 L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~ 474 (543)
|++|++++| .++ .++. ..+..+++|+.|++++|....+ +..+..+++|++|++++| .++
T Consensus 250 L~~L~Ls~n-~l~-~~~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 250 LRFLNLSYN-PIS-TIEG-----------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp CCEEECCSS-CCC-EECT-----------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCS
T ss_pred cCeeECCCC-cCC-ccCh-----------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCc
Confidence 666666653 344 2211 1344577788888888877654 556777888888888885 777
Q ss_pred ccCCCcCCCCCCccEEecccCCCCcc
Q 044382 475 FLSGPLKPRIPKLEELKINNIQNETC 500 (543)
Q Consensus 475 ~l~~~~~~~~~~L~~L~l~~c~~l~~ 500 (543)
.++...+..+++|++|+++++ .++.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N-~l~c 334 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSN-PLAC 334 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSS-CEEC
T ss_pred eeCHhHcCCCcccCEEEccCC-CccC
Confidence 777777778888888888884 4443
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.2e-25 Score=225.66 Aligned_cols=361 Identities=14% Similarity=0.124 Sum_probs=215.9
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc-cc-CccccCcccccEEecCCCCcccc-chhhhcc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-EL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKL 149 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l 149 (543)
+++++| ++++|.+.+ ..+..|.++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..++.+
T Consensus 30 ~~l~~L---~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYV---DLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEE---ECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEE---EecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 344444 477777664 22334557777777777777765 44 44577777777777777777765 6667777
Q ss_pred cccceeecCCCchhhhhhHH--HhhhcccceeecCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD--MGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQ 226 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~ 226 (543)
++|++|++++|...+.++.. ++.+++|++|++++|.+....|.. +..+++|+.|++
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L--------------------- 161 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL--------------------- 161 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC---------------------
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC---------------------
Confidence 77777777776444444444 667777777777777733323433 555555555532
Q ss_pred cceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC--CCCCcEEEEeccCCCCCCC
Q 044382 227 GTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP--HKNLEQFGICGYGGTKFPT 304 (543)
Q Consensus 227 ~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~ 304 (543)
++|......+ ..+.. ..+++.++++++....++.
T Consensus 162 ---------------------------------~~n~l~~~~~-----------~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 162 ---------------------------------TFNKVKSICE-----------EDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp ---------------------------------TTCCBSCCCT-----------TTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ---------------------------------CCCcccccCh-----------hhhhccccccccccccccCcccccch
Confidence 2221110000 00000 1233444444444333322
Q ss_pred CCC-------CCCCCCccEEEeecCCCCCCCC-CC---CCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeecc
Q 044382 305 WLG-------DSSFLNLVTLKFEDCGMCTALP-SV---GQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFE 373 (543)
Q Consensus 305 ~~~-------~~~l~~L~~L~l~~~~~~~~~~-~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 373 (543)
... ...+++|++|++++|...+..+ .+ ...++|+.|++++|....... + ...++.+....+
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~---~~~~~~~~~~~~- 269 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----G---HTNFKDPDNFTF- 269 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----T---CCSSCCCCTTTT-
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----c---hhhhccCccccc-
Confidence 110 0125688888888886644333 11 224788888888774322110 0 000111000000
Q ss_pred CcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccceEEEcCC
Q 044382 374 DLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCKMEIGGC 447 (543)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~ 447 (543)
. ....++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|++|++++|
T Consensus 270 ----------~-----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 270 ----------K-----GLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----------G-----GGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------c-----cccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0 012356666666663 44434442 345666666666543322 4556899999999999
Q ss_pred CCeee-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 448 KKVVW-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 448 ~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
....+ +..+..+++|++|++++| .++.+++..+..+++|++|++++ ++++.++ +..+..+++|++|+++++|--
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVP---DGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCC---TTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCC---HhHhccCCcccEEEccCCCcc
Confidence 88665 567888999999999996 77777666689999999999999 5899986 446788999999999998655
Q ss_pred cccchhhh
Q 044382 527 QSLVAEEE 534 (543)
Q Consensus 527 ~~~~~~~~ 534 (543)
...+....
T Consensus 409 ~~~~~~~~ 416 (455)
T 3v47_A 409 CSCPRIDY 416 (455)
T ss_dssp CCTTTTHH
T ss_pred cCCCcchH
Confidence 55553333
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.6e-25 Score=216.82 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCee-eecccCCCCCCceEEEc
Q 044382 390 VERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCR 468 (543)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 468 (543)
...+++|++|++++| .++ .++ .+..+++|+.|++++|.... .+..+..+++|++|+++
T Consensus 261 ~~~l~~L~~L~l~~n-~l~-~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSN-QIS-DIS-------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp GTTCTTCCEEECCSS-CCC-CCG-------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred HhcCCCcCEEEccCC-ccC-CCh-------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 356777888888775 555 222 34456777777887776644 33456678889999999
Q ss_pred CCCCCcccCCCcCCCCCCccEEecccC
Q 044382 469 DTSNQVFLSGPLKPRIPKLEELKINNI 495 (543)
Q Consensus 469 ~c~~l~~l~~~~~~~~~~L~~L~l~~c 495 (543)
+| .++.+++ +..+++|++|++++|
T Consensus 320 ~n-~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QN-HITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp SS-SCCCCGG--GGGCTTCSEESSSCC
T ss_pred CC-ccccccC--hhhhhccceeehhhh
Confidence 86 4666555 677889999999885
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.9e-25 Score=222.53 Aligned_cols=342 Identities=17% Similarity=0.124 Sum_probs=219.4
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCcc-ccCccccCcccc-------------cEEecCCCCccccchhh
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSIGDLRYL-------------RYLNLSGTVIRTLPESV 146 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~~~l~~L-------------~~L~L~~~~i~~lp~~~ 146 (543)
+++++|.+ + .+|++++++++|++|++++|.+. .+|.+++++.+| ++|++++|.++.+|..
T Consensus 16 L~l~~n~l-~----~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 16 PLRHSSNL-T----EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred hhcccCch-h----hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 34666666 3 44555556777777777776655 556666666654 6666666666665542
Q ss_pred hcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccc
Q 044382 147 NKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQ 226 (543)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~ 226 (543)
.++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|+
T Consensus 90 --~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~---------------------- 137 (454)
T 1jl5_A 90 --PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLG---------------------- 137 (454)
T ss_dssp --CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEE----------------------
T ss_pred --cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEE----------------------
Confidence 255666666665 33334432 3566666666665 44333211 2333332
Q ss_pred cceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCC
Q 044382 227 GTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWL 306 (543)
Q Consensus 227 ~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 306 (543)
+.... ... .+ .++.+++|++|++++|..+..+. ..++|++|++++|....+|. +
T Consensus 138 ----L~~n~----l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~---------------~~~~L~~L~L~~n~l~~l~~-~ 191 (454)
T 1jl5_A 138 ----VSNNQ----LEK-LP-ELQNSSFLKIIDVDNNSLKKLPD---------------LPPSLEFIAAGNNQLEELPE-L 191 (454)
T ss_dssp ----CCSSC----CSS-CC-CCTTCTTCCEEECCSSCCSCCCC---------------CCTTCCEEECCSSCCSSCCC-C
T ss_pred ----CcCCC----CCC-Cc-ccCCCCCCCEEECCCCcCcccCC---------------CcccccEEECcCCcCCcCcc-c
Confidence 22111 111 11 27788999999999887643321 13489999999998877773 4
Q ss_pred CCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCC
Q 044382 307 GDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGS 386 (543)
Q Consensus 307 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 386 (543)
. .+++|++|++++|... .++.. .++|++|++++| .++.++ . ...+++|++|+++++ .+..+.
T Consensus 192 ~--~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~n-~l~~lp-~------~~~l~~L~~L~l~~N-~l~~l~---- 253 (454)
T 1jl5_A 192 Q--NLPFLTAIYADNNSLK-KLPDL--PLSLESIVAGNN-ILEELP-E------LQNLPFLTTIYADNN-LLKTLP---- 253 (454)
T ss_dssp T--TCTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCSSCC----
T ss_pred c--CCCCCCEEECCCCcCC-cCCCC--cCcccEEECcCC-cCCccc-c------cCCCCCCCEEECCCC-cCCccc----
Confidence 4 4899999999998654 34432 369999999998 444443 1 345899999999985 333221
Q ss_pred CCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEE
Q 044382 387 SQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVV 466 (543)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 466 (543)
..+++|++|++++| .++ .+|..+++|++|++.++.... ....+++|+.|++++|....++.. .++|++|+
T Consensus 254 ----~~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~ 323 (454)
T 1jl5_A 254 ----DLPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDL---PPSLEELN 323 (454)
T ss_dssp ----SCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEECCC---CTTCCEEE
T ss_pred ----ccccccCEEECCCC-ccc-ccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCcccCC---cCcCCEEE
Confidence 24689999999994 788 688888999999999886443 112357999999999987765432 36999999
Q ss_pred EcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCCCcc
Q 044382 467 CRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKLQS 528 (543)
Q Consensus 467 l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~ 528 (543)
+++| .++.+|.. +++|++|++++| +++.+ |. .+++|++|++++|+ ++.
T Consensus 324 Ls~N-~l~~lp~~----~~~L~~L~L~~N-~l~~l----p~---~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 324 VSNN-KLIELPAL----PPRLERLIASFN-HLAEV----PE---LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp CCSS-CCSCCCCC----CTTCCEEECCSS-CCSCC----CC---CCTTCCEEECCSSC-CSS
T ss_pred CCCC-cccccccc----CCcCCEEECCCC-ccccc----cc---hhhhccEEECCCCC-CCc
Confidence 9995 67777753 689999999995 78888 43 47899999999984 444
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.8e-25 Score=223.30 Aligned_cols=314 Identities=15% Similarity=0.142 Sum_probs=231.0
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~ 128 (543)
.+.++...+.+..+. ..+ .+++++| ++++|.+.+ + .+..|.++++|++|+|++|.++.+ |..|.++++
T Consensus 13 ~~~v~c~~~~l~~ip--~~~--~~~l~~L---~L~~n~l~~-~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 13 DRAVLCHRKRFVAVP--EGI--PTETRLL---DLGKNRIKT-L---NQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp TTEEECCSCCCSSCC--SCC--CTTCSEE---ECCSSCCCE-E---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCEEEeCCCCcCcCC--CCC--CCCCcEE---ECCCCccce-E---CHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 356777666554332 122 2456666 599999886 2 233555899999999999999977 678999999
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccccccccccccce
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCNF 206 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~ 206 (543)
|++|+|++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|. +..++ ..
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------- 147 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA------------- 147 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTS-------------
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhh-------------
Confidence 99999999999999764 7899999999999986545556678899999999999987 33221 11
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPH 286 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (543)
+.++++|++|++++|..+..+ ...+..+
T Consensus 148 -----------------------------------------~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~l 175 (477)
T 2id5_A 148 -----------------------------------------FSGLNSLEQLTLEKCNLTSIP-----------TEALSHL 175 (477)
T ss_dssp -----------------------------------------STTCTTCCEEEEESCCCSSCC-----------HHHHTTC
T ss_pred -----------------------------------------ccCCCCCCEEECCCCcCcccC-----------hhHhccc
Confidence 444567777777777653221 2345678
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCC
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFP 365 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 365 (543)
++|+.|+++++....++..... .+++|+.|++++|...+.++ ......+|++|++++| .++.++... ...++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~ 248 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLA-----VRHLV 248 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHH-----HTTCT
T ss_pred CCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHH-----hcCcc
Confidence 9999999999987666543222 48899999999998777666 4555669999999998 454444222 24589
Q ss_pred CcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEc
Q 044382 366 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIG 445 (543)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 445 (543)
+|+.|+++++. +..+.... +..+++|++|++++| .+++..|. .+..+++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~------------------~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 249 YLRFLNLSYNP-ISTIEGSM----LHELLRLQEIQLVGG-QLAVVEPY------------------AFRGLNYLRVLNVS 304 (477)
T ss_dssp TCCEEECCSSC-CCEECTTS----CTTCTTCCEEECCSS-CCSEECTT------------------TBTTCTTCCEEECC
T ss_pred ccCeeECCCCc-CCccChhh----ccccccCCEEECCCC-ccceECHH------------------HhcCcccCCEEECC
Confidence 99999999864 44333222 468899999999994 67633343 45568899999999
Q ss_pred CCCCeeeec-ccCCCCCCceEEEcCCC
Q 044382 446 GCKKVVWRS-ATDHLGSQNSVVCRDTS 471 (543)
Q Consensus 446 ~~~~~~~~~-~~~~~~~L~~L~l~~c~ 471 (543)
+|....++. .+..+++|++|++++|+
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCC
Confidence 998876654 56789999999999975
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=228.78 Aligned_cols=306 Identities=14% Similarity=0.120 Sum_probs=161.1
Q ss_pred CCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 103 LQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
+.++++|++++|.++.+|.. +..+++|++|+|++|.++.+| ..+..+++|++|++++|......|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555566666555555443 455556666666666555553 3555566666666665532222223345566666666
Q ss_pred cCCCCCccccccc-cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 181 DSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 181 l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
+++|. +..+|.. ++.+++|+.|++..+.. ....+..+..+++|++|++
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l------------------------------~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNL------------------------------ERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------CBCCTTTTTTCTTCCEEEC
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcC------------------------------CCCChhhhhcCCcCcEEEC
Confidence 66665 4444443 34555555553211100 0000111455666777777
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
++|..+.. .+..+++|+.|+++++....++ ..++|+.|++++|......+. ..++|+.
T Consensus 179 ~~N~l~~~--------------~~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~~--~~~~L~~ 236 (597)
T 3oja_B 179 SSNRLTHV--------------DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRGP--VNVELTI 236 (597)
T ss_dssp TTSCCSBC--------------CGGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEECS--CCSCCCE
T ss_pred cCCCCCCc--------------ChhhhhhhhhhhcccCcccccc------CCchhheeeccCCcccccccc--cCCCCCE
Confidence 66554211 1333566667776665543321 134566666666543221111 1245666
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
|++++|. ++... . ...+++|+.|+++++. +....... ++.+++|++|+|++| .++ .+|
T Consensus 237 L~L~~n~-l~~~~-~------l~~l~~L~~L~Ls~N~-l~~~~~~~----~~~l~~L~~L~Ls~N-~l~-~l~------- 294 (597)
T 3oja_B 237 LKLQHNN-LTDTA-W------LLNYPGLVEVDLSYNE-LEKIMYHP----FVKMQRLERLYISNN-RLV-ALN------- 294 (597)
T ss_dssp EECCSSC-CCCCG-G------GGGCTTCSEEECCSSC-CCEEESGG----GTTCSSCCEEECTTS-CCC-EEE-------
T ss_pred EECCCCC-CCCCh-h------hccCCCCCEEECCCCc-cCCCCHHH----hcCccCCCEEECCCC-CCC-CCC-------
Confidence 6665552 21110 0 2234555555555432 22221111 234555555555552 333 122
Q ss_pred EEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCc
Q 044382 420 MLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNET 499 (543)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~ 499 (543)
..+..+++|+.|+|++|....++..+..+++|++|++++| .+..++ +..+++|+.|++++| .+.
T Consensus 295 -----------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L~l~~N-~~~ 358 (597)
T 3oja_B 295 -----------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHN-DWD 358 (597)
T ss_dssp -----------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSS-CEE
T ss_pred -----------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEEEeeCC-CCC
Confidence 1234478888899998888778777778899999999996 566665 567889999999985 444
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-24 Score=214.51 Aligned_cols=303 Identities=16% Similarity=0.149 Sum_probs=190.8
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l 149 (543)
+++++.|. +++|.+.. +|..++. .+++|++|++++|.++.++. .|..+++|++|++++|.++.+| ..+..+
T Consensus 44 l~~l~~l~---l~~~~l~~-l~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVT---FKNSTMRK-LPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEE---EESCEESE-ECTHHHH---HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCceEEE---ecCCchhh-CChhHhc---ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45555554 66666553 3334444 77788888888888776643 6777888888888888877764 446778
Q ss_pred cccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCcccc-ccccccccccccccceEecCCCCCChhhhcccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQG 227 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~ 227 (543)
++|++|++++| .+..+|.. ++.+++|++|++++|. +..+ |..++.+++|+.|++..+....
T Consensus 117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 179 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------- 179 (390)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB---------------
T ss_pred CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc---------------
Confidence 88888888876 45566654 4677888888888877 4444 3457777777777532221100
Q ss_pred ceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCC
Q 044382 228 TLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLG 307 (543)
Q Consensus 228 ~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
+ .+..+++|+.+++++|.. ..+...++|+.|+++++....++..
T Consensus 180 -~-----------------~~~~l~~L~~L~l~~n~l----------------~~~~~~~~L~~L~l~~n~l~~~~~~-- 223 (390)
T 3o6n_A 180 -V-----------------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGP-- 223 (390)
T ss_dssp -C-----------------CGGGCTTCSEEECCSSCC----------------SEEECCSSCSEEECCSSCCCEEECC--
T ss_pred -c-----------------ccccccccceeecccccc----------------cccCCCCcceEEECCCCeeeecccc--
Confidence 0 033345666777665543 1223345788888887776655432
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCC
Q 044382 308 DSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSS 387 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 387 (543)
.+++|+.|++++|... ..+.+..+++|++|++++|.........+ ..+++|++|+++++ .++.+...
T Consensus 224 --~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~--- 290 (390)
T 3o6n_A 224 --VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVALNLY--- 290 (390)
T ss_dssp --CCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSS-CCCEEECS---
T ss_pred --ccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCC-cCcccCcc---
Confidence 2468888888888553 44667788889999998884332223222 34778888888774 33333221
Q ss_pred CCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEE
Q 044382 388 QGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVC 467 (543)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 467 (543)
...+++|++|++++| .++ .+|. .+..+++|+.|++++|....++ +..+++|++|++
T Consensus 291 --~~~l~~L~~L~L~~n-~l~-~~~~------------------~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 291 --GQPIPTLKVLDLSHN-HLL-HVER------------------NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTL 346 (390)
T ss_dssp --SSCCTTCCEEECCSS-CCC-CCGG------------------GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEEC
T ss_pred --cCCCCCCCEEECCCC-cce-ecCc------------------cccccCcCCEEECCCCccceeC--chhhccCCEEEc
Confidence 346788888888885 666 4442 2233566666666666655443 455777777777
Q ss_pred cCCC
Q 044382 468 RDTS 471 (543)
Q Consensus 468 ~~c~ 471 (543)
++|+
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7753
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.7e-24 Score=222.25 Aligned_cols=302 Identities=16% Similarity=0.142 Sum_probs=190.6
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccch-hhhcc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPE-SVNKL 149 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l 149 (543)
+.+++.|. +++|.+.. +|..++. ++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.+|+ .++.+
T Consensus 50 l~~l~~l~---l~~~~l~~-lp~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVT---FKNSTMRK-LPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEE---ESSCEESE-ECTHHHH---HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEE---eeCCCCCC-cCHHHHc---cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 45555554 77776663 4444444 7888888888888888765 468888888888888888887754 46888
Q ss_pred cccceeecCCCchhhhhhHH-HhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 150 YNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
++|++|++++| .+..+|.. ++.+++|++|++++|.+.+..|..++.+++|+.|++..+.... +
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~--- 186 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------------V--- 186 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB------------C---
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC------------c---
Confidence 88888888887 45566654 5788888888888888433344567778888877543221100 0
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGD 308 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 308 (543)
.+..+++|+.|++++|.. ..+...++|+.|+++++....++..+
T Consensus 187 ------------------~~~~l~~L~~L~l~~n~l----------------~~l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 187 ------------------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp ------------------CGGGCTTCSEEECCSSCC----------------SEEECCTTCSEEECCSSCCCEEECSC--
T ss_pred ------------------ChhhhhhhhhhhcccCcc----------------ccccCCchhheeeccCCccccccccc--
Confidence 033345667777766544 22334567788888777765554432
Q ss_pred CCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCC
Q 044382 309 SSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQ 388 (543)
Q Consensus 309 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 388 (543)
.++|+.|++++|... ..+.+..+++|++|++++|......+..+ ..+++|+.|+++++ .+..+...
T Consensus 231 --~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~l~~~---- 296 (597)
T 3oja_B 231 --NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVALNLY---- 296 (597)
T ss_dssp --CSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECTTS-CCCEEECS----
T ss_pred --CCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHh------cCccCCCEEECCCC-CCCCCCcc----
Confidence 357888888887553 34567778888888888874333333232 34788888888874 34433222
Q ss_pred CCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCcccccCCCCccceEEEcCCCC
Q 044382 389 GVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSISIASLPALCKMEIGGCKK 449 (543)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~ 449 (543)
...+++|++|+|++| .++ .+|. .+++|+.|++.+|......+..+++|+.|+|++|+.
T Consensus 297 -~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 -GQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp -SSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred -cccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 356888888888884 666 5553 234455555544443333333444444555544443
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=6.2e-22 Score=192.33 Aligned_cols=288 Identities=16% Similarity=0.120 Sum_probs=170.5
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++++++++++.++.+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|......|..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36788888888888888765 36888888888888877 4467888888888888874333336667888888888888
Q ss_pred CCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 183 ~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
+|. +..+|..+. ++|++| ++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L------------------------------------------------------~l~~n 133 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVEL------------------------------------------------------RIHDN 133 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEE------------------------------------------------------ECCSS
T ss_pred CCc-CCccCcccc--ccCCEE------------------------------------------------------ECCCC
Confidence 887 555554332 333333 22222
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC---CCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT---KFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
.....+ ...+..+++|+.|+++++... ..+..+.. + +|++|++++|... .++
T Consensus 134 ~i~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l-~L~~L~l~~n~l~-~l~---------- 188 (332)
T 2ft3_A 134 RIRKVP-----------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG--L-KLNYLRISEAKLT-GIP---------- 188 (332)
T ss_dssp CCCCCC-----------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS--C-CCSCCBCCSSBCS-SCC----------
T ss_pred ccCccC-----------HhHhCCCccCCEEECCCCccccCCCCcccccC--C-ccCEEECcCCCCC-ccC----------
Confidence 211000 001122233333333333221 11111221 2 4444444444321 122
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
. ..+++|++|+++++ .++...... +..+++|++|++++| .+++..+.
T Consensus 189 -------------~--------~~~~~L~~L~l~~n-~i~~~~~~~----l~~l~~L~~L~L~~N-~l~~~~~~------ 235 (332)
T 2ft3_A 189 -------------K--------DLPETLNELHLDHN-KIQAIELED----LLRYSKLYRLGLGHN-QIRMIENG------ 235 (332)
T ss_dssp -------------S--------SSCSSCSCCBCCSS-CCCCCCTTS----STTCTTCSCCBCCSS-CCCCCCTT------
T ss_pred -------------c--------cccCCCCEEECCCC-cCCccCHHH----hcCCCCCCEEECCCC-cCCcCChh------
Confidence 1 11244555555543 222221111 456778888888884 66622221
Q ss_pred EEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCC------CCCccEEecc
Q 044382 420 MLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPR------IPKLEELKIN 493 (543)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------~~~L~~L~l~ 493 (543)
.+..+++|+.|++++|....++..+..+++|++|++++| .++.++...+.. .++|+.|+++
T Consensus 236 ------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 236 ------------SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ------------GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ------------HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 344567888888888877777777888999999999995 788877665544 4679999999
Q ss_pred cCCCCc--cccccCccccccCCccceEeeccCCC
Q 044382 494 NIQNET--CIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 494 ~c~~l~--~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+++ ++ .+. |..+..+++|+.+++++|.+
T Consensus 303 ~N~-~~~~~~~---~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 303 NNP-VPYWEVQ---PATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SSS-SCGGGSC---GGGGTTBCCSTTEEC-----
T ss_pred cCc-ccccccC---cccccccchhhhhhcccccC
Confidence 954 55 343 56788899999999988753
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.5e-22 Score=191.61 Aligned_cols=288 Identities=16% Similarity=0.147 Sum_probs=165.1
Q ss_pred CeeeEEEecCCCccccCccccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 104 QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.++++++++++.++.+|..+. +.|++|++++|.++.+|. .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367778888887777776553 577888888888887754 57778888888888764333336667778888888888
Q ss_pred CCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeee
Q 044382 183 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWT 262 (543)
Q Consensus 183 ~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (543)
+|. +..+|..+. ++|++|+ +++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~------------------------------------------------------l~~n 131 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELR------------------------------------------------------VHEN 131 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEE------------------------------------------------------CCSS
T ss_pred CCc-CCccChhhc--ccccEEE------------------------------------------------------CCCC
Confidence 877 555554432 3333332 2111
Q ss_pred cCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCC---CCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccc
Q 044382 263 CSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGT---KFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLK 338 (543)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 338 (543)
..... ....+..+++|+.|+++++... ..+..+.. +++|++|++++|... .++ .+ .++|+
T Consensus 132 ~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l~~L~~L~l~~n~l~-~l~~~~--~~~L~ 195 (330)
T 1xku_A 132 EITKV-----------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNIT-TIPQGL--PPSLT 195 (330)
T ss_dssp CCCBB-----------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG--CTTCCEEECCSSCCC-SCCSSC--CTTCS
T ss_pred ccccc-----------CHhHhcCCccccEEECCCCcCCccCcChhhccC--CCCcCEEECCCCccc-cCCccc--cccCC
Confidence 11000 0011222333444444443322 11222222 566666666666432 233 11 15555
Q ss_pred eeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCc
Q 044382 339 HLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL 418 (543)
Q Consensus 339 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L 418 (543)
+|++++|. ++.+. ... +..+++|++|++++| .+++..+.
T Consensus 196 ~L~l~~n~-l~~~~------------------------------~~~----~~~l~~L~~L~Ls~n-~l~~~~~~----- 234 (330)
T 1xku_A 196 ELHLDGNK-ITKVD------------------------------AAS----LKGLNNLAKLGLSFN-SISAVDNG----- 234 (330)
T ss_dssp EEECTTSC-CCEEC------------------------------TGG----GTTCTTCCEEECCSS-CCCEECTT-----
T ss_pred EEECCCCc-CCccC------------------------------HHH----hcCCCCCCEEECCCC-cCceeChh-----
Confidence 55555542 22111 100 345667777777763 45422221
Q ss_pred cEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCC------CCCccEEec
Q 044382 419 EMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPR------IPKLEELKI 492 (543)
Q Consensus 419 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------~~~L~~L~l 492 (543)
.+..+++|++|++++|....++..+..+++|++|++++| .++.++...+.. .+.|+.|++
T Consensus 235 -------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 235 -------------SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp -------------TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred -------------hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 233466777777777776667777777888888888884 677777655532 377888899
Q ss_pred ccCCCCccccccCccccccCCccceEeeccC
Q 044382 493 NNIQNETCIWKSHNELLQDICSLKRLLITSC 523 (543)
Q Consensus 493 ~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c 523 (543)
+++ .++..... |..+..+.+|+.++++++
T Consensus 301 ~~N-~~~~~~i~-~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSN-PVQYWEIQ-PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSS-SSCGGGSC-GGGGTTCCCGGGEEC---
T ss_pred ecC-cccccccC-ccccccccceeEEEeccc
Confidence 884 45543222 567888888888888776
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=5.8e-25 Score=231.51 Aligned_cols=84 Identities=24% Similarity=0.224 Sum_probs=39.9
Q ss_pred cCCeeeEEEecCCCcccc-CccccC-ccc-ccEEecCCCC-cc--ccchhhhcccccceeecCCCchhhh----hhHHHh
Q 044382 102 KLQRLRVFSLRGYHIYEL-PDSIGD-LRY-LRYLNLSGTV-IR--TLPESVNKLYNLHTLLLEGCRRLKK----LCADMG 171 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~l-p~~~~~-l~~-L~~L~L~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~----l~~~~~ 171 (543)
.+++|++|+|++|.++.. +..+.. ++. |++|++++|. ++ .++.....+++|++|++++|...+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 455666666666554421 223332 222 6666665553 22 2233334556666666665532111 333334
Q ss_pred hhcccceeecCCCC
Q 044382 172 NLIKLHHLNDSNTD 185 (543)
Q Consensus 172 ~l~~L~~L~l~~~~ 185 (543)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 55566666665555
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=5.9e-23 Score=197.41 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=64.5
Q ss_pred CCceEEEeeccccCC--ccchhhhhcCCCceEEeecccCC-CccccccccccccccccCCeeeEEEecCCCcc-ccCccc
Q 044382 48 KNLRHLSYIPEYFDG--GKRFEDLYDIQHLRTFLPVRLSN-GFLSGYLACSILPKLFKLQRLRVFSLRGYHIY-ELPDSI 123 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~~~~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~~ 123 (543)
.++++|++.++.+.+ .. ...+..+++|++|. +++ |.+.+ .++..|.++++|++|++++|.++ .+|..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~---L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLY---IGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEE---EEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCccc-ChhHhCCCCCCeee---CCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 345555555554443 11 13333444444443 442 44443 22333344555555555555544 344445
Q ss_pred cCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhhhhhHHHhhhc-ccceeecCCCCCccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLI-KLHHLNDSNTDSLEEMPLGIGKL 197 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~l~~l 197 (543)
..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..++.++ +|++|++++|.+.+.+|..+..+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 55555555555555544 3444455555555555555433334444444444 45555555554333344444333
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.3e-22 Score=193.30 Aligned_cols=231 Identities=19% Similarity=0.254 Sum_probs=163.2
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
...++++|++++|.++.+|..+..+++|++|+|++|.++.+|..++.+++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 34789999999999999998888899999999999999999999999999999999997 45588888999999999999
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|...+.+|..+.... + ...+.++++|++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------~-------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------A-------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc--------------------------c-------------------hhhhccCCCCCEEECcC
Confidence 99876777776543210 0 00145567788888888
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCcccee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHL 340 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 340 (543)
|..+.. +..+..+++|++|++++|....++..+.. +++|++|++++|...+.++ .++.+++|++|
T Consensus 193 n~l~~l------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRSL------------PASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCCC------------CGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCcc------------hHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 776322 23355677788888888777776665554 7788888888877777666 56777788888
Q ss_pred eecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc
Q 044382 341 TVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR 403 (543)
Q Consensus 341 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (543)
++++|...+.++..+ ..+++|++|++++|+..+.+... ++.+++|+.+.+..
T Consensus 259 ~L~~n~~~~~~p~~~------~~l~~L~~L~L~~n~~~~~iP~~-----l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDI------HRLTQLEKLDLRGCVNLSRLPSL-----IAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCCBCCTTG------GGCTTCCEEECTTCTTCCCCCGG-----GGGSCTTCEEECCG
T ss_pred ECCCCCchhhcchhh------hcCCCCCEEeCCCCCchhhccHH-----HhhccCceEEeCCH
Confidence 887776555444332 22555555555554433332211 34555555555544
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3.9e-24 Score=225.16 Aligned_cols=414 Identities=14% Similarity=0.053 Sum_probs=218.9
Q ss_pred CCCceEEEeeccccCC-----------cc--chhh-hhcCCCceEEeecccCCCcccccccccccccccc-CCe-eeEEE
Q 044382 47 PKNLRHLSYIPEYFDG-----------GK--RFED-LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFK-LQR-LRVFS 110 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~-----------~~--~~~~-~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~-l~~-L~~L~ 110 (543)
..++++|++.++.... .. .+.. ...+++|++|. +++|.+.+ ..+..+.. ++. |++|+
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~~i~~----~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH---FRRMIVSD----LDLDRLAKARADDLETLK 144 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESCBCCH----HHHHHHHHHHGGGCCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE---eeccEecH----HHHHHHHHhccccCcEEE
Confidence 4569999997743210 00 0111 12677788776 77776665 33333334 344 99999
Q ss_pred ecCCC-cc--ccCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchh----hhhhHHHhhhcccce
Q 044382 111 LRGYH-IY--ELPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRL----KKLCADMGNLIKLHH 178 (543)
Q Consensus 111 Ls~~~-l~--~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~ 178 (543)
+++|. ++ .++..+..+++|++|+|++|.+++ ++.....+++|++|++++|... ..++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99987 33 233334689999999999998763 3445678999999999987543 466666789999999
Q ss_pred eecCCCCCccccccccccccccccccceEecCC--CCCChhhhccccccccceecccccCcCCccchhhhccCCccccce
Q 044382 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD--SGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKE 256 (543)
Q Consensus 179 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~--~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~ 256 (543)
|++++|. +..+|..+..+++|++|++...... .......+..+..++ .+.+... .....+..+..+++|++
T Consensus 225 L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~-----~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 225 VKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC-RLGLSYM-----GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp EECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC-EEEETTC-----CTTTGGGGGGGGGGCCE
T ss_pred EeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc-ccCcccc-----chhHHHHHHhhcCCCcE
Confidence 9999998 6678877888899998865321111 011122233333333 2322211 11112222444555666
Q ss_pred eeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCC
Q 044382 257 LSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLP 335 (543)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 335 (543)
|+++++.. ........+..+++|+.|.+.++. ....++ ....++
T Consensus 298 L~Ls~~~l----------~~~~~~~~~~~~~~L~~L~L~~~~-------------------------~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 298 LDLLYALL----------ETEDHCTLIQKCPNLEVLETRNVI-------------------------GDRGLEVLAQYCK 342 (592)
T ss_dssp EEETTCCC----------CHHHHHHHHTTCTTCCEEEEEGGG-------------------------HHHHHHHHHHHCT
T ss_pred EecCCCcC----------CHHHHHHHHHhCcCCCEEeccCcc-------------------------CHHHHHHHHHhCC
Confidence 66654432 111122223445555555554221 111111 112334
Q ss_pred ccceeeecC----------ccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeecc--
Q 044382 336 SLKHLTVRG----------MSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR-- 403 (543)
Q Consensus 336 ~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~-- 403 (543)
+|++|++++ |..++..+.... ...+++|++|++.. ..+++...... ...+++|++|++++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l----~~~~~~L~~L~l~~-~~l~~~~~~~l---~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL----AQGCQELEYMAVYV-SDITNESLESI---GTYLKNLCDFRLVLLD 414 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHH----HHHCTTCSEEEEEE-SCCCHHHHHHH---HHHCCSCCEEEEEECS
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHH----HhhCccCeEEEeec-CCccHHHHHHH---HhhCCCCcEEEEeecC
Confidence 444444442 322221110000 01245555555522 22222211111 12366666666652
Q ss_pred -CcCccCCCC---------CCCCCccEEEEecccC-cc-----cccCCCCccceEEEcCCCCee--eecccCCCCCCceE
Q 044382 404 -CSKLQGTFP---------EHLPALEMLVIVECNE-LS-----ISIASLPALCKMEIGGCKKVV--WRSATDHLGSQNSV 465 (543)
Q Consensus 404 -c~~l~~~lp---------~~l~~L~~L~l~~~~~-l~-----~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 465 (543)
|+.++ ..| ..+++|++|++.+|.. +. .....+++|+.|+|++|.... ++..+..+++|++|
T Consensus 415 ~~n~l~-~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERIT-DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCS-SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCcccc-CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 44555 322 2366677777766543 11 111236777778887776532 34455667788888
Q ss_pred EEcCCCCCccc-CCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 466 VCRDTSNQVFL-SGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 466 ~l~~c~~l~~l-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
+|++|+ +++. .......+++|++|++++|+ ++.... ......++.|+...+..
T Consensus 494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~--~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQ--DLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCT--TGGGGCCTTEEEEEECC
T ss_pred eccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHH--HHHHHhCCCcEEEEecC
Confidence 888875 4432 12223457788888888865 554321 01122345555554444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.1e-20 Score=181.41 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=187.0
Q ss_pred CceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcc
Q 044382 49 NLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLR 127 (543)
Q Consensus 49 ~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~ 127 (543)
+++.+++..+.+..... .+ .+.++.| ++++|.+.+ ++. ..|.++++|++|++++|.++.+ |..|+.++
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~--~~~l~~L---~L~~n~i~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DL--PPDTALL---DLQNNKITE-IKD---GDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SC--CTTCCEE---ECCSSCCCC-BCT---TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccccCc--cC--CCCCeEE---ECCCCcCCE-eCh---hhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 57788888776643321 12 2456665 488888885 222 2455899999999999998877 77899999
Q ss_pred cccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcc--ccccccccccccccccc
Q 044382 128 YLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE--EMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 128 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~~ 205 (543)
+|++|++++|.++++|..+. ++|++|++++|......+..+.++++|++|++++|.+.. ..+..+..+++|+.|++
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999999999998887765 789999999974433334558899999999999998322 34455777777777754
Q ss_pred eEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC
Q 044382 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP 285 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (543)
..+... .+. ..+ .++|++|++++|..... ....+..
T Consensus 179 ~~n~l~------------~l~-------------------~~~--~~~L~~L~l~~n~l~~~-----------~~~~~~~ 214 (330)
T 1xku_A 179 ADTNIT------------TIP-------------------QGL--PPSLTELHLDGNKITKV-----------DAASLKG 214 (330)
T ss_dssp CSSCCC------------SCC-------------------SSC--CTTCSEEECTTSCCCEE-----------CTGGGTT
T ss_pred CCCccc------------cCC-------------------ccc--cccCCEEECCCCcCCcc-----------CHHHhcC
Confidence 322110 000 001 15677777776655211 1234566
Q ss_pred CCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCC-CCCC
Q 044382 286 HKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGD-DSPI 362 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~ 362 (543)
+++|+.|+++++....++. .+.. +++|++|++++|... .++ .+..+++|++|++++| .++.++...... ....
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNT 290 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCT
T ss_pred CCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC-cCCccChhhcCCccccc
Confidence 7788888888877665543 3433 778888888888654 555 6778888888888887 344444332221 1122
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccC
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 404 (543)
..+.++.|++.+++. ..+...+ ..+..+++++.++++++
T Consensus 291 ~~~~l~~l~l~~N~~-~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 291 KKASYSGVSLFSNPV-QYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSCCCSEEECCSSSS-CGGGSCG--GGGTTCCCGGGEEC---
T ss_pred ccccccceEeecCcc-cccccCc--cccccccceeEEEeccc
Confidence 356677777777542 2221111 11456777777777763
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.1e-20 Score=183.49 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=191.2
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDL 126 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l 126 (543)
.+++.+++..+.+..... .+ .++++.| ++++|.+.+ ++ +..|.++++|++|++++|.++.+ |..|+.+
T Consensus 33 c~l~~l~~~~~~l~~ip~--~~--~~~l~~L---~l~~n~i~~-~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK--EI--SPDTTLL---DLQNNDISE-LR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp EETTEEECCSSCCSSCCS--CC--CTTCCEE---ECCSSCCCE-EC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred ccCCEEECCCCCccccCC--CC--CCCCeEE---ECCCCcCCc-cC---HhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 357889988887654322 12 3566666 489988875 22 23556899999999999999977 6779999
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcc--ccccccccccccccc
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLE--EMPLGIGKLTCLQTL 203 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L 203 (543)
++|++|++++|.++.+|..+. ++|++|++++| .+..+|. .++.+++|++|++++|.+.. ..|..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 999999999999999988766 89999999997 4555654 47899999999999998321 344556655 67766
Q ss_pred cceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhccc
Q 044382 204 CNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDML 283 (543)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 283 (543)
++..+.... + +..+ .++|++|++++|.....+ ...+
T Consensus 178 ~l~~n~l~~------------l-------------------~~~~--~~~L~~L~l~~n~i~~~~-----------~~~l 213 (332)
T 2ft3_A 178 RISEAKLTG------------I-------------------PKDL--PETLNELHLDHNKIQAIE-----------LEDL 213 (332)
T ss_dssp BCCSSBCSS------------C-------------------CSSS--CSSCSCCBCCSSCCCCCC-----------TTSS
T ss_pred ECcCCCCCc------------c-------------------Cccc--cCCCCEEECCCCcCCccC-----------HHHh
Confidence 543221100 0 0001 156778888777653321 2345
Q ss_pred CCCCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCC-CC
Q 044382 284 KPHKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGD-DS 360 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~ 360 (543)
..+++|+.|++++|....++. ++.. +++|++|++++|... .+| .+..+++|++|++++| .++.++...... ..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGF 289 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC-CCCccChhHcccccc
Confidence 667788888888887666654 3443 788888988888654 555 6778888999998887 444444332221 11
Q ss_pred CCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccC
Q 044382 361 PIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRC 404 (543)
Q Consensus 361 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 404 (543)
...++.|+.|++.+++.......... +..+++|+.+++++|
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~---~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPAT---FRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGG---GTTBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCccc---ccccchhhhhhcccc
Confidence 22356677788877542211111111 456777777777764
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.1e-21 Score=187.73 Aligned_cols=125 Identities=25% Similarity=0.384 Sum_probs=105.2
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYN 151 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 151 (543)
.++++.|. +++|.+. .+++.+.++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..+..+++
T Consensus 80 ~~~l~~L~---L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALE---LRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp STTCCEEE---EESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred ccceeEEE---ccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 45666665 8888887 455566789999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCchhhhhhHHHhh---------hcccceeecCCCCCccccccccccccccccccc
Q 044382 152 LHTLLLEGCRRLKKLCADMGN---------LIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 152 L~~L~l~~~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
|++|++++|...+.+|..++. +++|++|++++|. +..+|..++.+++|+.|++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEE
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEc
Confidence 999999998888888876654 8888888888888 5677777777777776643
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.7e-19 Score=187.68 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCC
Q 044382 393 FPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 472 (543)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 472 (543)
+++|+.|++++ +.++ .+|..+++|+.|++.++.... ....+++|+.|++++|....++. .+++|++|++++| .
T Consensus 200 ~~~L~~L~L~~-N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~ 272 (622)
T 3g06_A 200 PSELYKLWAYN-NRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-Q 272 (622)
T ss_dssp CTTCCEEECCS-SCCS-SCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C
T ss_pred cchhhEEECcC-Cccc-ccCCCCCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-C
Confidence 45677777777 3666 666666677777777664333 22446778888888877666555 4678888888885 6
Q ss_pred CcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 473 QVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 473 l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
++.+|.. +..+++|+.|++++| .++..
T Consensus 273 L~~lp~~-l~~l~~L~~L~L~~N-~l~~~ 299 (622)
T 3g06_A 273 LTRLPES-LIHLSSETTVNLEGN-PLSER 299 (622)
T ss_dssp CCSCCGG-GGGSCTTCEEECCSC-CCCHH
T ss_pred CCcCCHH-HhhccccCEEEecCC-CCCCc
Confidence 7777765 677888888888884 45543
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.3e-23 Score=214.16 Aligned_cols=394 Identities=16% Similarity=0.102 Sum_probs=236.8
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-Ccc-cc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDS-IG 124 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~-~~ 124 (543)
+.++++|+++.+.+........+..+++|++|. +++|.+.......++..+..+++|++|++++|.++.. +.. +.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~---L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEE---EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEE---ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 567899999999876554333367788888886 8888777533334455666889999999999998753 322 23
Q ss_pred Ccc----cccEEecCCCCcc-----ccchhhhcccccceeecCCCchhhhhhHHHhh-----hcccceeecCCCCCccc-
Q 044382 125 DLR----YLRYLNLSGTVIR-----TLPESVNKLYNLHTLLLEGCRRLKKLCADMGN-----LIKLHHLNDSNTDSLEE- 189 (543)
Q Consensus 125 ~l~----~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~-----l~~L~~L~l~~~~~~~~- 189 (543)
.++ +|++|++++|.++ .+|..+..+++|++|++++|......+..+.. .++|++|++++|.+...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 455 7999999999888 45788899999999999998643333333332 45799999999984332
Q ss_pred ---cccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhcc-CCccccceeeeeeecCC
Q 044382 190 ---MPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARL-DGKKNLKELSLNWTCST 265 (543)
Q Consensus 190 ---lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 265 (543)
++..+..+++|++|++..+.... . ....+...+ ...++|++|++++|..+
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~-~-------------------------~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINE-A-------------------------GVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHH-H-------------------------HHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcch-H-------------------------HHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 34445566777777543221100 0 000000001 12457777877766542
Q ss_pred CCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCC------CCCCCCCCCCCccEEEeecCCCCCC----CC-CCCCC
Q 044382 266 DGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKF------PTWLGDSSFLNLVTLKFEDCGMCTA----LP-SVGQL 334 (543)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~l 334 (543)
. .........+..+++|++|+++++..... +.+.. .+++|++|++++|..... ++ .+..+
T Consensus 213 ~-------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 213 S-------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp T-------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred H-------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 1 11112334455677888888887764321 11122 267888888888855332 33 45567
Q ss_pred CccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCC
Q 044382 335 PSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH 414 (543)
Q Consensus 335 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~ 414 (543)
++|++|++++|. ++..+............++|++|++++|. ++.......+..+..+++|++|++++| .+++..+.
T Consensus 284 ~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~- 359 (461)
T 1z7x_W 284 ESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR- 359 (461)
T ss_dssp TTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH-
T ss_pred CCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH-
Confidence 889999998873 33221111110001234689999998864 332211111111346799999999996 66522111
Q ss_pred CCCccEEEEecccCcccccC-CCCccceEEEcCCCCe-----eeecccCCCCCCceEEEcCCCCCcccC-----CCcCCC
Q 044382 415 LPALEMLVIVECNELSISIA-SLPALCKMEIGGCKKV-----VWRSATDHLGSQNSVVCRDTSNQVFLS-----GPLKPR 483 (543)
Q Consensus 415 l~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~~~~~~ 483 (543)
.+...+. ..++|++|++++|... .++..+..+++|++|++++| .++... ...-..
T Consensus 360 -------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 360 -------------ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQP 425 (461)
T ss_dssp -------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTST
T ss_pred -------------HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccC
Confidence 0001111 1567778888877665 35666667888889999886 444321 111123
Q ss_pred CCCccEEecccCC
Q 044382 484 IPKLEELKINNIQ 496 (543)
Q Consensus 484 ~~~L~~L~l~~c~ 496 (543)
.++|+.|.+.++.
T Consensus 426 ~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 426 GCLLEQLVLYDIY 438 (461)
T ss_dssp TCCCCEEECTTCC
T ss_pred Ccchhheeecccc
Confidence 4578888887753
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.7e-21 Score=185.83 Aligned_cols=223 Identities=18% Similarity=0.161 Sum_probs=145.8
Q ss_pred EEeecccCCCccccccccccccccccCCeeeEEEecC-CCcc-ccCccccCcccccEEecCCCCcc-ccchhhhcccccc
Q 044382 77 TFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRG-YHIY-ELPDSIGDLRYLRYLNLSGTVIR-TLPESVNKLYNLH 153 (543)
Q Consensus 77 ~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~ 153 (543)
.+..+++++|.+.+. ..+++.+.++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 344445888888751 02345666899999999995 7766 67888999999999999999998 7788899999999
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccc-ccccccceEecCCCCCChhhhccccccccceecc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLT-CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKIS 232 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~ 232 (543)
+|++++|...+.+|..++.+++|++|++++|.+.+.+|..+..++ +|+.|++..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l---------------------- 186 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL---------------------- 186 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE----------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee----------------------
Confidence 999999865557888899999999999999995557888888877 777775322210
Q ss_pred cccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 233 KLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 233 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
....+..+..+. |++|++++|.... .....+..+++|+.|++++|.....+..+.. ++
T Consensus 187 --------~~~~~~~~~~l~-L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--l~ 244 (313)
T 1ogq_A 187 --------TGKIPPTFANLN-LAFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SK 244 (313)
T ss_dssp --------EEECCGGGGGCC-CSEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCC--CT
T ss_pred --------eccCChHHhCCc-ccEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccc--cC
Confidence 000111133333 7777776655311 1223344555566666655554333222222 45
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCc
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGM 345 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 345 (543)
+|++|++++|...+.+| .+..+++|++|++++|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 56666666555443444 4555555555555555
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=2.1e-23 Score=219.67 Aligned_cols=257 Identities=14% Similarity=0.100 Sum_probs=122.3
Q ss_pred cCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEE-EeccCCCCCCCCCCCCCCCCccEEEeecCCCCC
Q 044382 248 LDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFG-ICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCT 326 (543)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 326 (543)
+..+++|++|.+..+... .....-......+..+++|+.+. +.+.....++..+. .+++|++|++++|....
T Consensus 231 ~~~~~~L~~L~l~~~~~~-----~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAE-----VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHCTTCSEEECSBCCCC-----CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCH
T ss_pred HhcCCcceEcccccccCc-----cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCH
Confidence 455666666665433210 00011112233455666666662 22222112222222 25677777777765221
Q ss_pred C-CC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCc--------ccccccccCCCCCCCCCCCcc
Q 044382 327 A-LP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDL--------QEWEEWIPHGSSQGVERFPKL 396 (543)
Q Consensus 327 ~-~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~L 396 (543)
. +. .+..+++|++|++++| ++..+.... ...+++|++|++.++ ..+++...... ...+++|
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L 374 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVL----ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---SMGCPKL 374 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH----HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH---HHHCTTC
T ss_pred HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHH----HHhCCCCCEEEEecCcccccccCCCCCHHHHHHH---HHhchhH
Confidence 1 11 2446677777777766 111110000 112566777776332 22222111111 1236777
Q ss_pred cEEeeccCcCccCCCC----CCCCCccEEEEe-----cccCccc---------ccCCCCccceEEEcCCCCeeeeccc-C
Q 044382 397 RELHILRCSKLQGTFP----EHLPALEMLVIV-----ECNELSI---------SIASLPALCKMEIGGCKKVVWRSAT-D 457 (543)
Q Consensus 397 ~~L~l~~c~~l~~~lp----~~l~~L~~L~l~-----~~~~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~-~ 457 (543)
++|.+ +|+.+++..+ ..+++|+.|++. +|..++. .+..+++|+.|+++++-.-.....+ .
T Consensus 375 ~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~ 453 (594)
T 2p1m_B 375 ESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453 (594)
T ss_dssp CEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHH
Confidence 77744 3455542211 245677777777 4444431 1233677777777651111111112 2
Q ss_pred CCCCCceEEEcCCCCCcccC-CCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 458 HLGSQNSVVCRDTSNQVFLS-GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
.+++|++|++++|. +++.. ......+++|++|++++|+. +.... ......+++|++|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~--~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL--LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH--HHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH--HHHHHhCCCCCEEeeeCCCC
Confidence 36777777777764 43322 11124567777888877653 43211 11334467777788877754
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=6.2e-24 Score=216.52 Aligned_cols=130 Identities=17% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCcccEEeeccCcCccCC--------CCCCCCCccEEEEecccCcc-------cccCCCCccceEEEcCCCCeee----
Q 044382 392 RFPKLRELHILRCSKLQGT--------FPEHLPALEMLVIVECNELS-------ISIASLPALCKMEIGGCKKVVW---- 452 (543)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~--------lp~~l~~L~~L~l~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~---- 452 (543)
.+++|++|++++| .+++. +....++|++|++.+|.... ..+..+++|++|++++|.....
T Consensus 282 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 282 AKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 4666777777664 44311 11223567777776665332 1234478999999999966442
Q ss_pred -ecccC-CCCCCceEEEcCCCCCc-----ccCCCcCCCCCCccEEecccCCCCccccccC-ccccc-cCCccceEeeccC
Q 044382 453 -RSATD-HLGSQNSVVCRDTSNQV-----FLSGPLKPRIPKLEELKINNIQNETCIWKSH-NELLQ-DICSLKRLLITSC 523 (543)
Q Consensus 453 -~~~~~-~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~l~-~l~~L~~L~l~~c 523 (543)
...+. ..++|++|++++| .++ .++.. +..+++|++|++++| .++...... ...+. ...+|+.|.+.++
T Consensus 361 l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAAT-LLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH-HHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHH-HHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 12222 2679999999997 555 45544 567899999999995 566442100 00111 1346888888777
Q ss_pred CC
Q 044382 524 PK 525 (543)
Q Consensus 524 ~~ 525 (543)
.-
T Consensus 438 ~~ 439 (461)
T 1z7x_W 438 YW 439 (461)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-19 Score=188.76 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCC
Q 044382 393 FPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 472 (543)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 472 (543)
+++|++|++++ |.++ .+|..+++|+.|++.++...... ..+++|+.|++++|....++..+..+++|++|++++|+.
T Consensus 220 ~~~L~~L~Ls~-N~L~-~lp~~l~~L~~L~Ls~N~L~~lp-~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 220 PSGLKELIVSG-NRLT-SLPVLPSELKELMVSGNRLTSLP-MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCCEEEccC-CccC-cCCCCCCcCcEEECCCCCCCcCC-cccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 46788888887 4777 67777788888888887443322 257899999999998888888899999999999999754
Q ss_pred C
Q 044382 473 Q 473 (543)
Q Consensus 473 l 473 (543)
-
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=5.3e-23 Score=216.61 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred CCceEEEeeccccCCccc-------------hhh-hhcCCCceEEeecccCCCccccccccccccccc-cCCeeeEEEec
Q 044382 48 KNLRHLSYIPEYFDGGKR-------------FED-LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-KLQRLRVFSLR 112 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~-------------~~~-~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~Ls 112 (543)
.++++|++.++....... +.. ...+++|++|. +++|.+.+ ..+..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~~~~~----~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR---LKRMVVTD----DCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESCBCCH----HHHHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEE---eeCcEEcH----HHHHHHHHhCCCCcEEeCC
Confidence 568888888764211000 111 23566777775 67766665 3333333 67889999998
Q ss_pred CC-Cccc--cCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCc-hh--hhhhHHHhhhcccceeec
Q 044382 113 GY-HIYE--LPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCR-RL--KKLCADMGNLIKLHHLND 181 (543)
Q Consensus 113 ~~-~l~~--lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~l~~~~~~l~~L~~L~l 181 (543)
+| .++. ++..+.++++|++|++++|.++. ++.....+++|++|++++|. .+ ..++..+..+++|+.|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88 4553 44445678899999999887664 23333467789999998874 11 233343456789999999
Q ss_pred CCCCCccccccccccccccccccc
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
++|..+..+|..+..+++|++|++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCcHHHHHHHHhcCCcceEccc
Confidence 888546667767777788888753
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=179.41 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=89.4
Q ss_pred CCCCcEEEEeccC-CCCCC-CCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCC
Q 044382 286 HKNLEQFGICGYG-GTKFP-TWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPI 362 (543)
Q Consensus 286 ~~~L~~L~l~~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 362 (543)
+++|+.|+++++. ...++ ..+. .+++|++|++++|......+ .+..+++|++|++++|. +
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l-------------- 210 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H-------------- 210 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-S--------------
T ss_pred CCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-c--------------
Confidence 4455556666653 33332 2233 25666666666665444333 45556666666665552 1
Q ss_pred CCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceE
Q 044382 363 PFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKM 442 (543)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 442 (543)
+.+... . ...+++|++|++++| .+++..+..++. ....+.++.+
T Consensus 211 ----------------~~~~~~-~---~~~~~~L~~L~L~~n-~l~~~~~~~l~~---------------~~~~~~l~~l 254 (353)
T 2z80_A 211 ----------------ILLLEI-F---VDVTSSVECLELRDT-DLDTFHFSELST---------------GETNSLIKKF 254 (353)
T ss_dssp ----------------TTHHHH-H---HHHTTTEEEEEEESC-BCTTCCCC---------------------CCCCCCEE
T ss_pred ----------------ccchhh-h---hhhcccccEEECCCC-cccccccccccc---------------ccccchhhcc
Confidence 111100 0 234678888888884 666322222111 1123445555
Q ss_pred EEcCCCCe-----eeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCC
Q 044382 443 EIGGCKKV-----VWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQ 496 (543)
Q Consensus 443 ~l~~~~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~ 496 (543)
++.++... .++..+..+++|++|++++| .++.+|...+..+++|++|++++|+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 55555432 25566777899999999995 7788888877889999999999854
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=178.48 Aligned_cols=253 Identities=19% Similarity=0.168 Sum_probs=153.0
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-c
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-I 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~ 123 (543)
.+++++++|++++|.+..... ..+..+++|++|. +++|.+.+ ..+..|.++++|++|++++|.++.+|.. +
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~---L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISN-SDLQRCVNLQALV---LTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE---CTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccCcEEECCCCcCcccCH-HHhccCCCCCEEE---CCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 445567777777776654432 3455556666554 67776664 1222344677777777777777766654 6
Q ss_pred cCcccccEEecCCCCccccch--hhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCCCCCcccccccccccccc
Q 044382 124 GDLRYLRYLNLSGTVIRTLPE--SVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCL 200 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 200 (543)
+.+++|++|++++|.++.+|. .+..+++|++|++++|..+..+ +..++++++|++|++++|.+....|..++.+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 677777777777777777765 5667777777777776444444 3446677777777777777333345566666666
Q ss_pred ccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHh
Q 044382 201 QTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVL 280 (543)
Q Consensus 201 ~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 280 (543)
++|++..+.. .......+..+++|++|++++|.....+.. .+
T Consensus 201 ~~L~l~~n~l------------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l 242 (353)
T 2z80_A 201 SHLILHMKQH------------------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------EL 242 (353)
T ss_dssp EEEEEECSCS------------------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred CeecCCCCcc------------------------------ccchhhhhhhcccccEEECCCCcccccccc--------cc
Confidence 6664322211 111111234467788888888776443321 11
Q ss_pred cccCCCCCCcEEEEeccCCCC-----CCCCCCCCCCCCccEEEeecCCCCCCCC-C-CCCCCccceeeecCcc
Q 044382 281 DMLKPHKNLEQFGICGYGGTK-----FPTWLGDSSFLNLVTLKFEDCGMCTALP-S-VGQLPSLKHLTVRGMS 346 (543)
Q Consensus 281 ~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~ 346 (543)
......+.++.+.+.++.... +|.++.. +++|++|++++|... .++ . ++.+++|++|++++|+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHT--CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhc--ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 122345667777777665432 3334443 778888888888654 455 3 5788888888888885
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=179.86 Aligned_cols=221 Identities=15% Similarity=0.159 Sum_probs=130.8
Q ss_pred CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccch-hhhccc
Q 044382 73 QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPE-SVNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~ 150 (543)
++++.|. +++|.+.+ ++ +..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+|. .+..++
T Consensus 64 ~~l~~L~---L~~n~i~~-~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLN---LHENQIQI-IK---VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEE---CCSCCCCE-EC---TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEE---ccCCcCCe-eC---HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 3455543 77777664 22 233447777777777777777664 457777777777777777777754 466777
Q ss_pred ccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++|. +..++ ..+.++++|++|++++|..+..++. .+..+++|+.|++..+... .+
T Consensus 137 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------~~--- 200 (440)
T 3zyj_A 137 KLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------EI--- 200 (440)
T ss_dssp SCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------------SC---
T ss_pred cCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------------cc---
Confidence 77777777763 44444 3466777777777777554665554 3556666666643211100 00
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLG 307 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 307 (543)
. .+..+++|++|++++|..... ....+..+++|+.|++++|....++. .+.
T Consensus 201 ---------~--------~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 201 ---------P--------NLTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp ---------C--------CCTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred ---------c--------ccCCCcccCEEECCCCccCcc-----------ChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 0 144455666666666554211 12344556666777776666554433 233
Q ss_pred CCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
.+++|+.|++++|......+ .+..+++|+.|++++|+
T Consensus 253 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 --NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 36777777777775543333 45667777777777764
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.7e-19 Score=180.29 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=147.2
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~ 128 (543)
.+.++.....+.... ..+ .++++.|. +++|.+.+ ..+..|.++++|++|+|++|.++.++ ..|.++++
T Consensus 56 ~~~v~c~~~~l~~iP--~~~--~~~l~~L~---L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP--QGI--PSNTRYLN---LMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSSCC--SCC--CTTCSEEE---CCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCCcCccC--CCC--CCCccEEE---CcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 445555555443222 112 13555554 77777775 22234447888888888888877664 56778888
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccc
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCN 205 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~ 205 (543)
|++|+|++|.++.+|.. +..+++|++|++++| .+..+|. .+.++++|++|++++|..++.++. .+..+++|+.|++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 88888888888877544 677888888888886 3445543 467788888888887665666664 3666666666643
Q ss_pred eEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCC
Q 044382 206 FVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKP 285 (543)
Q Consensus 206 ~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (543)
..+... .. ..+..+++|++|++++|..... ....+..
T Consensus 204 ~~n~l~------------------------~~--------~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~ 240 (452)
T 3zyi_A 204 GMCNIK------------------------DM--------PNLTPLVGLEELEMSGNHFPEI-----------RPGSFHG 240 (452)
T ss_dssp TTSCCS------------------------SC--------CCCTTCTTCCEEECTTSCCSEE-----------CGGGGTT
T ss_pred CCCccc------------------------cc--------ccccccccccEEECcCCcCccc-----------CcccccC
Confidence 221100 00 0144556677777766654211 1234556
Q ss_pred CCCCcEEEEeccCCCCCCC-CCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 286 HKNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
+++|+.|++++|....++. .+. .+++|+.|++++|......+ .+..+++|++|++++|+
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhc--CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6777777777776554432 233 36778888887775543332 45677788888887764
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.1e-19 Score=171.19 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=34.9
Q ss_pred eeeEEEecCCCccccCcc-ccCcccccEEecCCCCcccc---chhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 105 RLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTL---PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
+|++|++++|.++.+|.. |..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEE
Confidence 444444444444444332 34444444444444444422 333344444444444443 2333333344444444444
Q ss_pred cCCCC
Q 044382 181 DSNTD 185 (543)
Q Consensus 181 l~~~~ 185 (543)
+++|.
T Consensus 108 l~~n~ 112 (306)
T 2z66_A 108 FQHSN 112 (306)
T ss_dssp CTTSE
T ss_pred CCCCc
Confidence 44444
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=5e-19 Score=169.73 Aligned_cols=223 Identities=19% Similarity=0.118 Sum_probs=122.0
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc---CccccCcccccEEecCCCCccccchhhhccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL---PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 150 (543)
++++|. +++|.+.. ++..++. ++++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..++
T Consensus 29 ~l~~L~---L~~n~l~~-i~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~ 101 (306)
T 2z66_A 29 SATRLE---LESNKLQS-LPHGVFD---KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101 (306)
T ss_dssp TCCEEE---CCSSCCCC-CCTTTTT---TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred CCCEEE---CCCCccCc-cCHhHhh---ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCC
Confidence 444443 66666552 3333333 666777777777766543 3445566777777777777666666666677
Q ss_pred ccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGT 228 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~ 228 (543)
+|++|++++| .+..++ ..+..+++|++|++++|.+....+..+..+++|+.|++..+.. .
T Consensus 102 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~-- 163 (306)
T 2z66_A 102 QLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF---------------Q-- 163 (306)
T ss_dssp TCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE---------------G--
T ss_pred CCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc---------------c--
Confidence 7777777765 333333 2456667777777777663333344455555555553211100 0
Q ss_pred eecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCC-CCC
Q 044382 229 LKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPT-WLG 307 (543)
Q Consensus 229 L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 307 (543)
....+..+..+++|++|++++|..+.. ....+..+++|+.|++++|....++. .+.
T Consensus 164 ------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 164 ------------ENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp ------------GGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred ------------cccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 000111245556666666655544211 12234455666666666666555443 222
Q ss_pred CCCCCCccEEEeecCCCCCCCC-CCCCCC-ccceeeecCcc
Q 044382 308 DSSFLNLVTLKFEDCGMCTALP-SVGQLP-SLKHLTVRGMS 346 (543)
Q Consensus 308 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~-~L~~L~l~~~~ 346 (543)
.+++|+.|++++|...+..+ .+..++ +|++|++++|+
T Consensus 221 --~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 --CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred --CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 36677777777775544444 455553 67777777664
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=176.22 Aligned_cols=236 Identities=22% Similarity=0.240 Sum_probs=168.6
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~ 159 (543)
++.++.+.. +|..+++ .+++|+|++|.++.++ ..|.++++|++|+|++|.++.++ ..+..+++|++|++++
T Consensus 49 ~c~~~~l~~-iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 49 ICVRKNLRE-VPDGIST------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp ECCSCCCSS-CCSCCCT------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EeCCCCcCc-CCCCCCC------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 366666663 5555554 8899999999999875 67899999999999999999884 6788999999999999
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++..+. .+.
T Consensus 122 n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~--------------~l~----------- 174 (440)
T 3zyj_A 122 N-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELK--------------RLS----------- 174 (440)
T ss_dssp S-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------TCC-----------
T ss_pred C-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCC--------------Ccc-----------
Confidence 8 5666664 58899999999999999 666664 57788888888542211 000
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~ 316 (543)
......+.++++|++|++++|..+.. ..+..+++|+.|++++|.+..++ ..+.. +++|+.
T Consensus 175 ----~i~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~ 235 (440)
T 3zyj_A 175 ----YISEGAFEGLSNLRYLNLAMCNLREI-------------PNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQK 235 (440)
T ss_dssp ----EECTTTTTTCSSCCEEECTTSCCSSC-------------CCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCE
T ss_pred ----eeCcchhhcccccCeecCCCCcCccc-------------cccCCCcccCEEECCCCccCccChhhhcc--CccCCE
Confidence 11112267788899999988776422 23566778888888888766553 33443 778888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
|++++|......+ .+..+++|++|+|++| .++.+.... ...+++|+.|++.+++
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL-----FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT-----TSSCTTCCEEECCSSC
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhH-----hccccCCCEEEcCCCC
Confidence 8888876654434 5777888888888887 444443222 2346778888887754
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=9.2e-19 Score=177.41 Aligned_cols=236 Identities=22% Similarity=0.211 Sum_probs=171.2
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCcccc-chhhhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ ++++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..+.++++|++|++++
T Consensus 60 ~c~~~~l~~-iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 60 VCTRRGLSE-VPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp ECCSSCCSS-CCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCcCc-cCCCCCC------CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 466666663 5545554 899999999999977 56799999999999999999988 46789999999999999
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCc
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENI 237 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~ 237 (543)
| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++..+. .+.
T Consensus 133 n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~--------------~l~----------- 185 (452)
T 3zyi_A 133 N-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELK--------------KLE----------- 185 (452)
T ss_dssp S-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------TCC-----------
T ss_pred C-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCC--------------Ccc-----------
Confidence 8 4656654 47889999999999999 667665 57888888888543211 111
Q ss_pred CCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCC-CCCCCCCCCCccE
Q 044382 238 KDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDSSFLNLVT 316 (543)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~ 316 (543)
......+.++++|++|++++|..+.. ..+..+++|+.|++++|.+..++ ..+.. +++|+.
T Consensus 186 ----~i~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~ 246 (452)
T 3zyi_A 186 ----YISEGAFEGLFNLKYLNLGMCNIKDM-------------PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKK 246 (452)
T ss_dssp ----EECTTTTTTCTTCCEEECTTSCCSSC-------------CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCE
T ss_pred ----ccChhhccCCCCCCEEECCCCccccc-------------ccccccccccEEECcCCcCcccCcccccC--ccCCCE
Confidence 01112267788899999988876422 23667788888888888876653 34443 788888
Q ss_pred EEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcc
Q 044382 317 LKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQ 376 (543)
Q Consensus 317 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (543)
|++++|......+ .+..+++|++|++++| .++.+.... ...+++|+.|++.+++
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDL-----FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTS-----STTCTTCCEEECCSSC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHH-----hccccCCCEEEccCCC
Confidence 8888886655444 6778888888888887 444443222 2347778888887754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.6e-19 Score=173.86 Aligned_cols=291 Identities=12% Similarity=0.059 Sum_probs=154.9
Q ss_pred CeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 104 QRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 104 ~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
..++..+++.+.+...+. .+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEEC
Confidence 356666666666654433 2456667777777777777663 456677777777777663 332332 566666777776
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|. +..++. .++|++|++++
T Consensus 88 s~n~-l~~l~~----------------------------------------------------------~~~L~~L~l~~ 108 (317)
T 3o53_A 88 NNNY-VQELLV----------------------------------------------------------GPSIETLHAAN 108 (317)
T ss_dssp CSSE-EEEEEE----------------------------------------------------------CTTCCEEECCS
T ss_pred cCCc-cccccC----------------------------------------------------------CCCcCEEECCC
Confidence 6665 332211 12334444433
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCcccee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHL 340 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 340 (543)
|.. ..++.. .+++|++|++++|......+ .++.+++|++|
T Consensus 109 n~l-----------------------------------~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 109 NNI-----------------------------------SRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp SCC-----------------------------------SEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE
T ss_pred Ccc-----------------------------------CCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEE
Confidence 332 111110 14456666666665443333 45566777777
Q ss_pred eecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccE
Q 044382 341 TVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEM 420 (543)
Q Consensus 341 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~ 420 (543)
++++|.........+. ..+++|++|+++++. ++.+.. ...+++|++|++++| .++ .+|.
T Consensus 150 ~Ls~N~l~~~~~~~~~-----~~l~~L~~L~L~~N~-l~~~~~------~~~l~~L~~L~Ls~N-~l~-~l~~------- 208 (317)
T 3o53_A 150 DLKLNEIDTVNFAELA-----ASSDTLEHLNLQYNF-IYDVKG------QVVFAKLKTLDLSSN-KLA-FMGP------- 208 (317)
T ss_dssp ECTTSCCCEEEGGGGG-----GGTTTCCEEECTTSC-CCEEEC------CCCCTTCCEEECCSS-CCC-EECG-------
T ss_pred ECCCCCCCcccHHHHh-----hccCcCCEEECCCCc-Cccccc------ccccccCCEEECCCC-cCC-cchh-------
Confidence 7766632221111110 124555555555532 222211 224666777777763 554 3321
Q ss_pred EEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcc
Q 044382 421 LVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETC 500 (543)
Q Consensus 421 L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~ 500 (543)
.+..+++|+.|++++|....++..+..+++|++|++++|+.........+..+++|+.|++.+|+.++.
T Consensus 209 -----------~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 209 -----------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -----------GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred -----------hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 234467777777777777777777777777788887776433122223356677777777776666555
Q ss_pred ccccCccccccCCccceEeeccCCCCcccc
Q 044382 501 IWKSHNELLQDICSLKRLLITSCPKLQSLV 530 (543)
Q Consensus 501 l~~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 530 (543)
.. + .-...+.+....-..|..+.+-.
T Consensus 278 ~~---~-~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 278 QN---E-EECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp SS---S-CCCSSTTCEEETTEEEBCCTTTH
T ss_pred Cc---h-hccCCCceecccceeeccCChhH
Confidence 42 1 11112233333334466666533
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=6.4e-19 Score=169.25 Aligned_cols=246 Identities=19% Similarity=0.213 Sum_probs=154.6
Q ss_pred CCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccc-------cCCeeeEEEecCCCcc-cc
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLF-------KLQRLRVFSLRGYHIY-EL 119 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~~~l~-~l 119 (543)
.+++.+++..|.+ .. ...+... ++.| ++++|.+... .++..+. ++++|++|++++|.++ .+
T Consensus 43 ~~L~~l~l~~n~l-~~--p~~~~~~--L~~L---~L~~n~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-AD--LGQFTDI--IKSL---SLKRLTVRAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EECTTHHHHCCTT-CC--CHHHHHH--HHHC---CCCEEEEEEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred CCceeEeeccccc-cc--HHHHHHH--Hhhc---ccccccccCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 3456666666666 11 1333322 4444 5777777431 2222222 5788999999999887 56
Q ss_pred Cccc--cCcccccEEecCCCCccccchhhhcc-----cccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccc--c
Q 044382 120 PDSI--GDLRYLRYLNLSGTVIRTLPESVNKL-----YNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEE--M 190 (543)
Q Consensus 120 p~~~--~~l~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--l 190 (543)
|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|......|..++++++|++|++++|.+.+. +
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 7765 88899999999999888878878877 8899999998754333346688889999999998885443 2
Q ss_pred cccc--ccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCC
Q 044382 191 PLGI--GKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGL 268 (543)
Q Consensus 191 p~~l--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (543)
|..+ +.+++|++|++..+... .........+..+++|++|++++|......
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~---------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGME---------------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCC---------------------------CHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHHHHhccCCCCCEEECCCCcCc---------------------------chHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 3333 56666666643211100 000111122445677888888777653221
Q ss_pred CCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCcc
Q 044382 269 SSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 346 (543)
+ ...+..+++|+.|++++|....+|..+. ++|++|++++|... .+|.+..+++|++|++++|+
T Consensus 245 ~----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~-~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 G----------APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp C----------CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCC-SCCCTTTSCEEEEEECTTCT
T ss_pred c----------hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCC-CChhHhhCCCCCEEeccCCC
Confidence 1 1223345677888888777766666543 57788888777553 33556777777777777763
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.7e-19 Score=173.67 Aligned_cols=265 Identities=13% Similarity=0.116 Sum_probs=147.8
Q ss_pred cCCeeeEEEecCCCccccC-ccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 102 KLQRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
.+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++| .+..++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCEEE
Confidence 5556777777777666554 456667777777777776665543 666677777777665 333333 236677777
Q ss_pred cCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeee
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLN 260 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (543)
+++|. +..++.. .+++|+.|++..+.. .......+..+++|++|+++
T Consensus 106 l~~n~-l~~~~~~--~~~~L~~L~l~~N~l------------------------------~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 106 AANNN-ISRVSCS--RGQGKKNIYLANNKI------------------------------TMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CCSSC-CSEEEEC--CCSSCEEEECCSSCC------------------------------CSGGGBCTGGGSSEEEEECT
T ss_pred CCCCc-cCCcCcc--ccCCCCEEECCCCCC------------------------------CCccchhhhccCCCCEEECC
Confidence 77666 4443321 133444443211110 01111124445666666666
Q ss_pred eecCCCCCCCcccccHHHHhccc-CCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccce
Q 044382 261 WTCSTDGLSSTEAETEKDVLDML-KPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKH 339 (543)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 339 (543)
+|..... ....+ ..+++|+.|++++|....++... .+++|++|++++|......+.+..+++|++
T Consensus 153 ~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 153 LNEIDTV-----------NFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TSCCCEE-----------EGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCcc-----------cHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccE
Confidence 5554211 01111 23566777777777665554332 266788888877755433335667788888
Q ss_pred eeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCcc
Q 044382 340 LTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALE 419 (543)
Q Consensus 340 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 419 (543)
|++++| .++.++..+ ..+++|+.|++.+++....... .. ...+++|+.+++.+++.++|..|..+..-.
T Consensus 219 L~L~~N-~l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~-~~---~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~ 287 (317)
T 3o53_A 219 ISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNGFHCGTLR-DF---FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (317)
T ss_dssp EECTTS-CCCEECTTC------CCCTTCCEEECTTCCCBHHHHH-HH---HHTCHHHHHHHHHHHHHHHSSSSCCCSSTT
T ss_pred EECcCC-cccchhhHh------hcCCCCCEEEccCCCccCcCHH-HH---HhccccceEEECCCchhccCCchhccCCCc
Confidence 888777 444444332 3467788888877543312211 11 457888888888887778766665444333
Q ss_pred EEE--EecccCcc
Q 044382 420 MLV--IVECNELS 430 (543)
Q Consensus 420 ~L~--l~~~~~l~ 430 (543)
... -.+|..+.
T Consensus 288 ~~~~~~~cc~~l~ 300 (317)
T 3o53_A 288 LGHYGAYCCEDLP 300 (317)
T ss_dssp CEEETTEEEBCCT
T ss_pred eecccceeeccCC
Confidence 333 23455443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.1e-18 Score=163.48 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.++...+.+..... .+ .++++.|. +++|.+.+ ++.. .|..+++|++|++++|.++.+ |..|..+++|
T Consensus 14 ~~~~c~~~~l~~ip~--~~--~~~l~~L~---l~~n~i~~-~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV--GI--PAASQRIF---LHGNRISH-VPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCT--TC--CTTCSEEE---CTTSCCCE-ECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred eEEEcCcCCcccCCc--CC--CCCceEEE---eeCCcCCc-cCHH---HcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence 566666665543321 11 34566664 78777775 2222 344788888888888888876 6678888888
Q ss_pred cEEecCCCC-cccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc-cccccccccccc
Q 044382 130 RYLNLSGTV-IRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 130 ~~L~L~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
++|++++|. ++.+ |..+..+++|++|++++|......|..+.++++|++|++++|. +..++. .++.+++|+.|+
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEE
Confidence 888888886 7777 6678888888888888874433335557788888888888888 555543 356666666654
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.6e-16 Score=148.06 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=81.2
Q ss_pred CCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccceEEEcCCCCeeeec-ccCCCCCCc
Q 044382 391 ERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCKMEIGGCKKVVWRS-ATDHLGSQN 463 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 463 (543)
..+++|++|++++| .+++..|. .+++|++|++.++..... .+..+++|++|++++|....++. .+..+++|+
T Consensus 102 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 34455555555552 34422221 234555555554432221 24457778888888877766554 467788888
Q ss_pred eEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeeccCCC
Q 044382 464 SVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPK 525 (543)
Q Consensus 464 ~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~ 525 (543)
+|++++| .++.++...+..+++|++|++++ +.++.++ +..+..+++|++|+++++|-
T Consensus 181 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 181 RLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALP---TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCC---HHHHTTCTTCCEEECCSSCE
T ss_pred EEECCCC-cccccCHhHccCcccccEeeCCC-CcCCcCC---HHHcccCcccCEEeccCCCc
Confidence 8888885 56666555577888888888888 4677775 34677788888888888753
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=7.3e-17 Score=152.11 Aligned_cols=202 Identities=19% Similarity=0.127 Sum_probs=111.7
Q ss_pred eeeEEEecCCCccccCc-cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
.|++|++++|.++.++. .|..+++|++|++++|.++.++. .+..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666665543 46666666666666666665533 45666666666666653222223445666666666666
Q ss_pred CCCCcccccc-ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 183 NTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 183 ~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
+|. +..++. .++.+++|++|++..+.... ...+..+..+++|++|++++
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 109 ETN-LASLENFPIGHLKTLKELNVAHNLIQS-----------------------------FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-----------------------------CCCCGGGGGCTTCCEEECCS
T ss_pred CCC-ccccCchhcccCCCCCEEECcCCccce-----------------------------ecCchhhccCCCCCEEECCC
Confidence 666 444332 45555555555432111100 00011244556666666666
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCc-EEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccce
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLE-QFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKH 339 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 339 (543)
|..+..+. ..+..+..++.+. .++++++....++..... ..+|+.|++++|......+ .+..+++|++
T Consensus 159 N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 159 NKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp SCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccE
Confidence 55422111 1112222233333 677777776666554443 4478888888886543333 4577888888
Q ss_pred eeecCcc
Q 044382 340 LTVRGMS 346 (543)
Q Consensus 340 L~l~~~~ 346 (543)
|++++|+
T Consensus 229 L~l~~N~ 235 (276)
T 2z62_A 229 IWLHTNP 235 (276)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 8888874
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.7e-17 Score=167.58 Aligned_cols=211 Identities=16% Similarity=0.169 Sum_probs=117.9
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
+|+.| ++++|.+.+ ..+..|..+++|++|+|++|.++..++ +..+++|++|+|++|.++.+|.. ++|+
T Consensus 35 ~L~~L---~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 35 NVKEL---DLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GCCEE---ECCSSCCCC----CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CccEE---EeeCCcCCC----CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 44444 477777775 222345577888888888888776544 77788888888888877776532 7788
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceeccc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISK 233 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~ 233 (543)
+|++++|. +..++. ..+++|+.|++++|.+.+..|..++.+++|+.|++..+..
T Consensus 103 ~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------------------- 156 (487)
T 3oja_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI----------------------- 156 (487)
T ss_dssp EEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC-----------------------
T ss_pred EEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC-----------------------
Confidence 88888763 443432 2467788888888873333345566666666664321100
Q ss_pred ccCcCCccchhhhcc-CCccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCC
Q 044382 234 LENIKDIGDAKEARL-DGKKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFL 312 (543)
Q Consensus 234 l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 312 (543)
....+..+ ..+++|++|++++|..+. ......+++|+.|++++|....++..+.. ++
T Consensus 157 -------~~~~~~~l~~~l~~L~~L~Ls~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~ 214 (487)
T 3oja_A 157 -------DTVNFAELAASSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AA 214 (487)
T ss_dssp -------CEEEGGGGGGGTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCEECGGGGG--GT
T ss_pred -------CCcChHHHhhhCCcccEEecCCCcccc-------------ccccccCCCCCEEECCCCCCCCCCHhHcC--CC
Confidence 00001112 245566666666555421 12222345555555555555444444332 45
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCc
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGM 345 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 345 (543)
+|+.|++++|.... +| .+..+++|+.|++++|
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 55555555554332 22 4444555555555554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-17 Score=170.30 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.6
Q ss_pred cccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 126 LRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 126 l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+++|++|+|++|.++.+ |..+..+++|++|++++|. +...+. ++.+++|++|++++|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY 91 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc
Confidence 34677777777777766 3456677777777777663 322222 6666667777666665
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.3e-16 Score=150.46 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=88.9
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-cc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DS 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~ 122 (543)
..++.++++|+++.|.+..... ..+..+++|++|. +++|.+.+ ++. ..|.++++|++|++++|.++.++ ..
T Consensus 24 ~~l~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 24 DNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLD---LSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SSSCTTCCEEECTTCCCCEECT-TTTTTCTTCSEEE---CTTCCCCE-ECT---TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCCCCCccEEECCCCcccccCH-hHhccccCCcEEE---CCCCcCCc-cCH---HHccCCcCCCEEECCCCccCccChhh
Confidence 3455667777777776654432 3455555555554 66666653 221 23446777777777777766554 45
Q ss_pred ccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhh-hhhHHHhhhcccceeecCCCCCccccc-cccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLK-KLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTC 199 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~ 199 (543)
|..+++|++|++++|.++.++. .+..+++|++|++++|.... .+|..++.+++|++|++++|. +..++ ..+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh
Confidence 6777777777777777766643 46677777777777763222 245566677777777777776 44433 33444444
Q ss_pred cc
Q 044382 200 LQ 201 (543)
Q Consensus 200 L~ 201 (543)
|+
T Consensus 175 L~ 176 (276)
T 2z62_A 175 MP 176 (276)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=6.5e-18 Score=162.22 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=87.1
Q ss_pred ceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcc--ccCcccc-------CcccccEEecCCCCcc-ccch
Q 044382 75 LRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIY--ELPDSIG-------DLRYLRYLNLSGTVIR-TLPE 144 (543)
Q Consensus 75 L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~--~lp~~~~-------~l~~L~~L~L~~~~i~-~lp~ 144 (543)
.+.|..+++++|.+ .+|..++. .|++|++++|.++ .+|..+. ++++|++|++++|.++ .+|.
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 44455556777777 35555555 2888888888875 3555454 6889999999999888 5677
Q ss_pred hh--hcccccceeecCCCchhhhhhHHHhhh-----cccceeecCCCCCccccc-cccccccccccccc
Q 044382 145 SV--NKLYNLHTLLLEGCRRLKKLCADMGNL-----IKLHHLNDSNTDSLEEMP-LGIGKLTCLQTLCN 205 (543)
Q Consensus 145 ~~--~~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~ 205 (543)
.+ ..+++|++|++++|. +..+|..++.+ ++|++|++++|. +..++ ..++.+++|+.|++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEEC
T ss_pred HHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEEC
Confidence 65 788899999998874 44447667777 889999999888 55544 56777777777754
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=7.1e-17 Score=151.69 Aligned_cols=100 Identities=28% Similarity=0.395 Sum_probs=61.5
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh-HHHhhhcccce
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHH 178 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~ 178 (543)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|. +..++ ..++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 336667777777777766654 3667777777777777777653 56677777777777763 43443 33566777777
Q ss_pred eecCCCCCccccccc-cccccccccc
Q 044382 179 LNDSNTDSLEEMPLG-IGKLTCLQTL 203 (543)
Q Consensus 179 L~l~~~~~~~~lp~~-l~~l~~L~~L 203 (543)
|++++|. +..++.. ++.+++|+.|
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred EECCCCc-CCccCHHHhccCCCCCEE
Confidence 7777776 4443322 3344444433
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=5.3e-16 Score=145.58 Aligned_cols=113 Identities=27% Similarity=0.376 Sum_probs=68.4
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccchh-hhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
+++++.+.. +|..+++ .+++|++++|.++.++. .|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 22 ~~~~~~l~~-ip~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 22 DCSSKKLTA-IPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp ECTTSCCSS-CCSCCCT------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred EccCCCCCc-cCCCCCC------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 366666653 3333333 66777777777776654 567777777777777777777554 35677777777777
Q ss_pred Cchhhhhh-HHHhhhcccceeecCCCCCcccccc-ccccccccccc
Q 044382 160 CRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTL 203 (543)
Q Consensus 160 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L 203 (543)
| .+..+| ..+..+++|++|++++|. +..++. .++.+++|+.|
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 95 N-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp S-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred C-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEE
Confidence 6 344444 335667777777777776 444332 23444444444
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3.6e-16 Score=148.06 Aligned_cols=119 Identities=22% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchhhhccc
Q 044382 72 IQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY 150 (543)
Q Consensus 72 ~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 150 (543)
+++++.+ ++++|.+.. +|..++ +.+++|++++|.++.+ +..|..+++|++|++++|.++.+|.. ..++
T Consensus 9 l~~l~~l---~~~~~~l~~-ip~~~~------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~ 77 (290)
T 1p9a_G 9 VASHLEV---NCDKRNLTA-LPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLP 77 (290)
T ss_dssp STTCCEE---ECTTSCCSS-CCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCT
T ss_pred cCCccEE---ECCCCCCCc-CCCCCC------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCC
Confidence 3444444 366666663 333333 3667777777776655 34567777777777777777766543 5667
Q ss_pred ccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccc-cccccccccccc
Q 044382 151 NLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMP-LGIGKLTCLQTL 203 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L 203 (543)
+|++|++++| .+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|
T Consensus 78 ~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEE
T ss_pred cCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEE
Confidence 7777777765 455666556667777777777776 44444 234555555544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=8.4e-17 Score=153.97 Aligned_cols=190 Identities=20% Similarity=0.255 Sum_probs=102.8
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4555666666666655554 35556666666666666655544 5556666666666552 44443 2555666666666
Q ss_pred CCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeee
Q 044382 182 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNW 261 (543)
Q Consensus 182 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (543)
++|. +..++. +..+++|+.|++..+... ... .+..+++|++|++++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------------------------------~~~--~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT------------------------------NIS--PLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCC------------------------------CCG--GGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccC------------------------------cCc--cccCCCCccEEEccC
Confidence 6665 444432 444455554432111000 000 033445566666655
Q ss_pred ecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceee
Q 044382 262 TCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLT 341 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 341 (543)
|...+ ...+..+++|+.|++++|....++. +. .+++|++|++++|... .++.+..+++|++|+
T Consensus 161 n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQIS-DVSPLANTSNLFIVT 223 (308)
T ss_dssp SCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCC-BCGGGTTCTTCCEEE
T ss_pred CcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccC-ccccccCCCCCCEEE
Confidence 54421 1114556667777776666555544 22 3677777777777543 333466777777777
Q ss_pred ecCcc
Q 044382 342 VRGMS 346 (543)
Q Consensus 342 l~~~~ 346 (543)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 77763
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.1e-15 Score=140.78 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=119.5
Q ss_pred CccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCCC
Q 044382 313 NLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVE 391 (543)
Q Consensus 313 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 391 (543)
++++|++++|......+ .+..+++|++|++++|..++.+.... ...+++|++|++.+++.++.+.... +.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~----f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDA----LK 102 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTS----EE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHH----hC
Confidence 45555555554322222 34455555555555553343333211 1224555555555433333322111 24
Q ss_pred CCCcccEEeeccCcCccCCCCC--CCCCcc---EEEEecccCcc----cccCCCCccc-eEEEcCCCCeeeecccCCCCC
Q 044382 392 RFPKLRELHILRCSKLQGTFPE--HLPALE---MLVIVECNELS----ISIASLPALC-KMEIGGCKKVVWRSATDHLGS 461 (543)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~lp~--~l~~L~---~L~l~~~~~l~----~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~ 461 (543)
.+++|++|++++| .++ .+|. .+++|+ +|++.++..+. ..+..+++|+ .|++++|....++......++
T Consensus 103 ~l~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp CCTTCCEEEEEEE-CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCCCCCEEeCCCC-CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 5666666666663 555 3542 344454 66666652222 1355688899 999999988777765444589
Q ss_pred CceEEEcCCCCCcccCCCcCCCC-CCccEEecccCCCCccccccCccccccCCccceEeeccCCCC
Q 044382 462 QNSVVCRDTSNQVFLSGPLKPRI-PKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITSCPKL 526 (543)
Q Consensus 462 L~~L~l~~c~~l~~l~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~c~~l 526 (543)
|++|++++|..++.++...+..+ ++|++|++++ +.++.++ .. .+++|+.|++++++.+
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~----~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALP----SK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCC----CT--TCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCC----hh--HhccCceeeccCccCC
Confidence 99999999756889988888999 9999999999 6899885 22 6789999999998764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.8e-15 Score=139.70 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=85.8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCc
Q 044382 289 LEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCL 367 (543)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 367 (543)
.+.++++++....+|..+ .+++++|++++|......+ .+..+++|++|++++| .++.+.... ...+++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~-----~~~l~~L 87 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI-----FKELKNL 87 (270)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT-----TSSCTTC
T ss_pred CCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh-----hcCCCCC
Confidence 445555555544444322 2355666666554432222 4555666666666555 222222111 1235555
Q ss_pred CeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC---CCCCccEEEEecccCccc---ccCCCCccce
Q 044382 368 ETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIVECNELSI---SIASLPALCK 441 (543)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~ 441 (543)
++|++.++. +..+... . +..+++|++|++++ +.+++..+. .+++|++|++.++..... .+..+++|+.
T Consensus 88 ~~L~l~~n~-l~~~~~~-~---~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 88 ETLWVTDNK-LQALPIG-V---FDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CEEECCSSC-CCCCCTT-T---TTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCc-CCcCCHh-H---cccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 666555532 2222111 1 34566666666666 345522221 222333333333221110 1233455555
Q ss_pred EEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEeccc
Q 044382 442 MEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINN 494 (543)
Q Consensus 442 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~ 494 (543)
|++++|....++. .+..+++|++|++++| .++.++...+..+++|+.|++++
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 5555555444332 3444555555555553 44555554455555555555555
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.2e-17 Score=162.51 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=76.7
Q ss_pred ccCCCccccccccccccccccC--CeeeEEEecCCCccccCccccCcccccEEecCCCCccc--cchhhhcccccceeec
Q 044382 82 RLSNGFLSGYLACSILPKLFKL--QRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT--LPESVNKLYNLHTLLL 157 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l--~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l 157 (543)
++++|.+.. ..+ ..+ +.+++|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 53 ~l~~~~~~~----~~~---~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 53 DLTGKNLHP----DVT---GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp ECTTCBCCH----HHH---HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred ccccccCCH----HHH---HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 366665542 222 255 67888888888877665556678888888888887763 6777778888888888
Q ss_pred CCCchhhhhhHHHhhhcccceeecCCCCCccc--cccccccccccccc
Q 044382 158 EGCRRLKKLCADMGNLIKLHHLNDSNTDSLEE--MPLGIGKLTCLQTL 203 (543)
Q Consensus 158 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L 203 (543)
++|......+..++.+++|++|++++|..+.. ++..+..+++|++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 88754456666677788888888888732332 33334444444444
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=3.4e-15 Score=145.67 Aligned_cols=218 Identities=15% Similarity=0.113 Sum_probs=107.7
Q ss_pred EEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCe
Q 044382 292 FGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLET 369 (543)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~ 369 (543)
++.+++..+++|..+ .+++++|+|++|.. +.++ .+..+++|++|+|++|...+.++... ...++++.+
T Consensus 14 v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-----f~~L~~l~~ 83 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL----PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHE 83 (350)
T ss_dssp EEEESTTCCSCCTTC----CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTS-----BCSCTTCCE
T ss_pred EEecCCCCCccCcCc----CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhH-----hhcchhhhh
Confidence 444444444444322 23455555555533 2232 34555555555555554333333221 112444444
Q ss_pred eeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCC----CCCCccEEEEecccCcccc----cCC-CCccc
Q 044382 370 LRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE----HLPALEMLVIVECNELSIS----IAS-LPALC 440 (543)
Q Consensus 370 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~~~l~~~----~~~-~~~L~ 440 (543)
+...+++.+..+.... +..+++|++|++++ ++++ .+|. ...++..|.+.++..+... +.. ...++
T Consensus 84 ~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~-n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 84 IRIEKANNLLYINPEA----FQNLPNLQYLLISN-TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp EEEEEETTCCEECTTS----BCCCTTCCEEEEEE-ECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred hhcccCCcccccCchh----hhhccccccccccc-cccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 3333333333332211 24555666666655 3454 3331 1224445555554433311 111 23456
Q ss_pred eEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 441 KMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 441 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
.|++++|....++......++|++|++.+++.++.+|..+|+.+++|++|++++ +++++++. ..+.+|+.|.+
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~------~~~~~L~~L~~ 230 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPS------YGLENLKKLRA 230 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS------SSCTTCCEEEC
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccCh------hhhccchHhhh
Confidence 666666666665555545566666666666666666666666666666666666 46666641 12445566666
Q ss_pred ccCCCCcccchh
Q 044382 521 TSCPKLQSLVAE 532 (543)
Q Consensus 521 ~~c~~l~~~~~~ 532 (543)
.+|.+++.+|..
T Consensus 231 l~~~~l~~lP~l 242 (350)
T 4ay9_X 231 RSTYNLKKLPTL 242 (350)
T ss_dssp TTCTTCCCCCCT
T ss_pred ccCCCcCcCCCc
Confidence 666666666643
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=6.4e-15 Score=139.43 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=125.4
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC-CCCCCCccceeeecCccceeeeCccccCCCCC
Q 044382 283 LKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSP 361 (543)
Q Consensus 283 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 361 (543)
+..+++++.++++++....+|..+ .++++.|++++|......+ .+..+++|++|++++|. ++.+.. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-------D 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-------C
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-------C
Confidence 344567777777777766666543 2477888888776543333 56777888888887773 433321 1
Q ss_pred CCCCCcCeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccce
Q 044382 362 IPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCK 441 (543)
Q Consensus 362 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 441 (543)
..+++|++|+++++ .++.+.. ....+++|++|++++ ++++ .+|. ..+..+++|++
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~l~~-N~l~-~l~~-----------------~~~~~l~~L~~ 128 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPL-----LGQTLPALTVLDVSF-NRLT-SLPL-----------------GALRGLGELQE 128 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCC-----CTTTCTTCCEEECCS-SCCC-CCCS-----------------STTTTCTTCCE
T ss_pred CCCCcCCEEECCCC-cCCcCch-----hhccCCCCCEEECCC-CcCc-ccCH-----------------HHHcCCCCCCE
Confidence 34677777777764 3332221 145677778888877 4666 3431 13444566777
Q ss_pred EEEcCCCCeeeec-ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEee
Q 044382 442 MEIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLI 520 (543)
Q Consensus 442 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l 520 (543)
|++++|....++. .+..+++|++|++++| .++.+|...+..+++|++|++++ ++++.+ |..+...++|+.|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~i----p~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTI----PKGFFGSHLLPFAFL 202 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCC----CTTTTTTCCCSEEEC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCcc----ChhhcccccCCeEEe
Confidence 7777766655443 3456777777777774 66777766667777777777777 467777 445556667777777
Q ss_pred ccCC
Q 044382 521 TSCP 524 (543)
Q Consensus 521 ~~c~ 524 (543)
+++|
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=152.63 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=106.2
Q ss_pred CCeeeEEEecCCCccc-cCccc--cCcccccEEecCCCCcccc-c----hhhhcccccceeecCCCchhhhhhHHHhhhc
Q 044382 103 LQRLRVFSLRGYHIYE-LPDSI--GDLRYLRYLNLSGTVIRTL-P----ESVNKLYNLHTLLLEGCRRLKKLCADMGNLI 174 (543)
Q Consensus 103 l~~L~~L~Ls~~~l~~-lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 174 (543)
+++|++|++++|.+.. .|..+ ..+++|++|++++|.++.. | ..+..+++|++|++++|......+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456667776666553 34444 6666677777776666632 2 2234566677777766643333334456666
Q ss_pred ccceeecCCCCCccc--ccc--ccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCC
Q 044382 175 KLHHLNDSNTDSLEE--MPL--GIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDG 250 (543)
Q Consensus 175 ~L~~L~l~~~~~~~~--lp~--~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~ 250 (543)
+|++|++++|.+.+. ++. .++.+++|++|++..+... .........+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------------~l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------------------------TPTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------------------------chHHHHHHHHhc
Confidence 777777776663321 221 1244555555533211100 000000011344
Q ss_pred ccccceeeeeeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCC
Q 044382 251 KKNLKELSLNWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPS 330 (543)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 330 (543)
+++|++|++++|..+...+. ....+..+++|++|++++|.+..+|..+. ++|+.|++++|... .++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~~L~~L~Ls~N~l~-~~~~ 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLEQVPKGLP----AKLRVLDLSSNRLN-RAPQ 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCCSCCSCCC----SCCSCEECCSCCCC-SCCC
T ss_pred CCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCCchhhhhc----CCCCEEECCCCcCC-CCch
Confidence 56677777766665332110 01112223567777777776666655432 46777777776543 3344
Q ss_pred CCCCCccceeeecCcc
Q 044382 331 VGQLPSLKHLTVRGMS 346 (543)
Q Consensus 331 ~~~l~~L~~L~l~~~~ 346 (543)
+..+++|++|++++|+
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 5666777777776663
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.3e-15 Score=145.71 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=89.8
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..+++|++|++++| .+..++. +..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence 4456666666666666655544 566666666666666666553 3556666666666665 3444443 5566666666
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++. ++.+++|+.|++..+... .. .. +..+++|++|++
T Consensus 135 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------------------------------~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 135 YLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS------------------------------DL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp ECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC------------------------------CC-GG-GTTCTTCCEEEC
T ss_pred ECCCCc-cCcCcc-ccCCCCccEEEccCCcCC------------------------------CC-hh-hcCCCCCCEEEC
Confidence 666665 444433 444555555432111000 00 00 344455666666
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCC
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGM 324 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 324 (543)
++|...+. ..+..+++|+.|++++|....++. +. .+++|+.|++++|..
T Consensus 181 ~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 181 DDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTI 229 (308)
T ss_dssp CSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEE
T ss_pred CCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEEccCCee
Confidence 55554211 114445666666666666555443 22 366677777766644
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.4e-15 Score=142.86 Aligned_cols=123 Identities=27% Similarity=0.460 Sum_probs=87.6
Q ss_pred hhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchh-hh
Q 044382 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPES-VN 147 (543)
Q Consensus 69 ~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~ 147 (543)
...+++++.|. +.+|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. +.
T Consensus 37 ~~~l~~L~~L~---l~~~~i~~------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQII---ANNSDIKS------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEE---CTTSCCCC------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccceeeee---eCCCCccc------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 33455666665 77776653 234568888999999998888764 578888999999999988877544 67
Q ss_pred cccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCccccccc-cccccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTL 203 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L 203 (543)
.+++|++|++++|. +..++ ..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE
Confidence 88999999998874 44444 446788899999998887 5555432 3444444444
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.4e-15 Score=139.91 Aligned_cols=131 Identities=15% Similarity=0.305 Sum_probs=58.4
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCc-cccccccccccccccCCeeeEEEecC-CCccccC-cc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGF-LSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP-DS 122 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~-~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp-~~ 122 (543)
++.++++|++..|.+..... ..+..+++|++|. +++|. +.. +++. .|.++++|++|++++ |.++.++ ..
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~---l~~n~~l~~-i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIY---VSIDVTLQQ-LESH---SFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECT-TTTTTCTTCCEEE---EECCSSCCE-ECTT---TEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCcccEEEEeCCcceEECH-HHccCCCCCcEEe---CCCCCCcce-eCHh---HcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 44455555555555543322 2333344444443 44443 332 1111 222455555555554 4454443 23
Q ss_pred ccCcccccEEecCCCCccccchhhhcccccc---eeecCCCchhhhhhH-HHhhhcccc-eeecCCCC
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPESVNKLYNLH---TLLLEGCRRLKKLCA-DMGNLIKLH-HLNDSNTD 185 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~---~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~ 185 (543)
|..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|. .+..+++|+ +|++++|.
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 4455555555555555554443 44444444 555554423333332 244444555 55554444
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.9e-16 Score=153.91 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=167.1
Q ss_pred CCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc--cCcc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE--LPDS 122 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~ 122 (543)
+..++++++..+.+. ...+..+ ++++.|. +.+|.+.+. ++.+..+++|++|++++|.++. +|..
T Consensus 46 ~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~---l~~n~l~~~-----~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFR---CPRSFMDQP-----LAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp STTSSEEECTTCBCC----HHHHHHHHHTTCSEEE---CTTCEECSC-----CCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred chhheeeccccccCC----HHHHHhhhhccceEEE---cCCcccccc-----chhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 456889999988764 1334444 6777776 888888763 2335578999999999999873 6777
Q ss_pred ccCcccccEEecCCCCcc-ccchhhhcccccceeecCCCchhh--hhhHHHhhhcccceeecCCC-CCccc--ccccccc
Q 044382 123 IGDLRYLRYLNLSGTVIR-TLPESVNKLYNLHTLLLEGCRRLK--KLCADMGNLIKLHHLNDSNT-DSLEE--MPLGIGK 196 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~-~~~~~--lp~~l~~ 196 (543)
+..+++|++|++++|.++ ..|..+..+++|++|++++|..+. .++..+..+++|++|++++| . +.. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHh
Confidence 899999999999999988 568889999999999999985554 36777889999999999999 6 543 5556777
Q ss_pred cc-ccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccccc
Q 044382 197 LT-CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAET 275 (543)
Q Consensus 197 l~-~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (543)
++ +|++|++..+.. .......+..+..+++|++|++++|.. .
T Consensus 193 l~~~L~~L~l~~~~~---------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~----------l 235 (336)
T 2ast_B 193 VSETITQLNLSGYRK---------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVM----------L 235 (336)
T ss_dssp SCTTCCEEECCSCGG---------------------------GSCHHHHHHHHHHCTTCSEEECTTCTT----------C
T ss_pred cccCCCEEEeCCCcc---------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCc----------C
Confidence 77 788775432210 000012222355677888888877652 1
Q ss_pred HHHHhcccCCCCCCcEEEEeccCCCCCCC--CCCCCCCCCccEEEeecCCCCCCCCCCCCC-CccceeeecCc
Q 044382 276 EKDVLDMLKPHKNLEQFGICGYGGTKFPT--WLGDSSFLNLVTLKFEDCGMCTALPSVGQL-PSLKHLTVRGM 345 (543)
Q Consensus 276 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~ 345 (543)
....+..+..+++|+.|+++++....... .+. .+++|+.|++++| .... .+..+ ..++.|++++|
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS 303 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh--cCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc
Confidence 11234456667888888888875221111 233 3788999999888 2111 12223 34666677655
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=3.7e-15 Score=145.35 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=143.3
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeE-EEecCCCcccc-Cc
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRV-FSLRGYHIYEL-PD 121 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~-L~Ls~~~l~~l-p~ 121 (543)
..++.++++|+++.|.+..+.. .+|..+++|++|. +++|.+.+.++..+|. +++++.. +.+++|+++.+ |.
T Consensus 26 ~~l~~~l~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~---Ls~N~i~~~i~~~~f~---~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 26 SDLPRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIE---ISQNDVLEVIEADVFS---NLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCCTTCSEEEEESCCCSEECT-TSSTTCTTCCEEE---EECCTTCCEECTTSBC---SCTTCCEEEEEEETTCCEECTT
T ss_pred cCcCCCCCEEEccCCcCCCcCH-HHHcCCCCCCEEE---CcCCCCCCccChhHhh---cchhhhhhhcccCCcccccCch
Confidence 4566788888888888765543 4566666666664 7888776655555555 6766554 55666777777 45
Q ss_pred cccCcccccEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHH-Hhhh-cccceeecCCCCCcccccccccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCAD-MGNL-IKLHHLNDSNTDSLEEMPLGIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l-~~L~~L~l~~~~~~~~lp~~l~~l~ 198 (543)
.|..+++|++|++++|.++.+|. .+....++..+++.++..+..++.. +..+ ..+++|++++|. ++.+|.+.....
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcccc
Confidence 67888888888888888887754 3446667777887766566666543 4444 357778888887 666766554444
Q ss_pred ccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHH
Q 044382 199 CLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKD 278 (543)
Q Consensus 199 ~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (543)
+|++|.+... ..........|.+
T Consensus 178 ~L~~l~l~~~-----------------------------n~l~~i~~~~f~~---------------------------- 200 (350)
T 4ay9_X 178 QLDELNLSDN-----------------------------NNLEELPNDVFHG---------------------------- 200 (350)
T ss_dssp EEEEEECTTC-----------------------------TTCCCCCTTTTTT----------------------------
T ss_pred chhHHhhccC-----------------------------CcccCCCHHHhcc----------------------------
Confidence 5544421100 0000000011333
Q ss_pred HhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecC
Q 044382 279 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRG 344 (543)
Q Consensus 279 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 344 (543)
+++|+.|++++|.+..+|.. .+.+|+.|.+.++...+.+|.+..+++|+.+++.+
T Consensus 201 -------l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 -------ASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp -------EECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred -------CcccchhhcCCCCcCccChh----hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 44555555555555666653 25578888888877778888888888888888865
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.4e-16 Score=157.89 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=144.8
Q ss_pred hhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----cCccc-------cCcccccEEecC
Q 044382 67 EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE----LPDSI-------GDLRYLRYLNLS 135 (543)
Q Consensus 67 ~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~----lp~~~-------~~l~~L~~L~L~ 135 (543)
..+..+++|++|. +++|.+....+..+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 26 ~~l~~~~~L~~L~---L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 26 AVLLEDDSVKEIV---LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHHCSCCCEEE---CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHhcCCCccEEE---CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4445566666664 888877764444444556678888888888875442 33333 678888888888
Q ss_pred CCCccc-----cchhhhcccccceeecCCCchhhh----hhHHHhhh---------cccceeecCCCCCc-cccc---cc
Q 044382 136 GTVIRT-----LPESVNKLYNLHTLLLEGCRRLKK----LCADMGNL---------IKLHHLNDSNTDSL-EEMP---LG 193 (543)
Q Consensus 136 ~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l---------~~L~~L~l~~~~~~-~~lp---~~ 193 (543)
+|.++. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. ..+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888775 677788888888888888754322 22334444 78888888888833 2333 34
Q ss_pred cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCccc
Q 044382 194 IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEA 273 (543)
Q Consensus 194 l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (543)
+..+++|+.|++..+..... ......+..+..+++|++|++++|..+ .
T Consensus 183 l~~~~~L~~L~L~~n~l~~~-------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~-------~ 230 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE-------------------------GIEHLLLEGLAYCQELKVLDLQDNTFT-------H 230 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH-------------------------HHHHHHHTTGGGCTTCCEEECCSSCCH-------H
T ss_pred HHhCCCcCEEECcCCCCCHh-------------------------HHHHHHHHHhhcCCCccEEECcCCCCC-------c
Confidence 55566666664322211000 000011113556677777777666541 0
Q ss_pred ccHHHHhcccCCCCCCcEEEEeccCCCCC-----CCCCCCCCCCCccEEEeecCCCCC----CCC-CC-CCCCccceeee
Q 044382 274 ETEKDVLDMLKPHKNLEQFGICGYGGTKF-----PTWLGDSSFLNLVTLKFEDCGMCT----ALP-SV-GQLPSLKHLTV 342 (543)
Q Consensus 274 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-~~-~~l~~L~~L~l 342 (543)
.........+..+++|+.|++++|.+... +..+....+++|++|++++|.... .++ .+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 01123344566677777777777765432 222211126678888887776544 244 33 45678888888
Q ss_pred cCcc
Q 044382 343 RGMS 346 (543)
Q Consensus 343 ~~~~ 346 (543)
++|.
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 7774
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=4.6e-17 Score=161.44 Aligned_cols=241 Identities=16% Similarity=0.125 Sum_probs=162.6
Q ss_pred ccccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCcc----ccchhh-------hcccccceeecC
Q 044382 95 SILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIR----TLPESV-------NKLYNLHTLLLE 158 (543)
Q Consensus 95 ~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~~-------~~l~~L~~L~l~ 158 (543)
.++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456667789999999999999874 3445788999999999998554 335444 688999999999
Q ss_pred CCchhh----hhhHHHhhhcccceeecCCCCCccccccc----cccc---------cccccccceEecCCCCCChhhhcc
Q 044382 159 GCRRLK----KLCADMGNLIKLHHLNDSNTDSLEEMPLG----IGKL---------TCLQTLCNFVVGKDSGSGLRELKS 221 (543)
Q Consensus 159 ~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l---------~~L~~L~~~~~~~~~~~~~~~l~~ 221 (543)
+|.... .+|..+..+++|++|++++|.+....+.. +..+ ++|++|++..+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n------------- 169 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN------------- 169 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-------------
Confidence 985444 47778899999999999999943222222 2222 45554432211
Q ss_pred ccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcccccHHHHhc-ccCCCCCCcEEEEeccCC-
Q 044382 222 LIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTEAETEKDVLD-MLKPHKNLEQFGICGYGG- 299 (543)
Q Consensus 222 l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~- 299 (543)
.........+...+..+++|++|++++|..+ .. ....... .+..+++|+.|++++|.+
T Consensus 170 -------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 170 -------------RLENGSMKEWAKTFQSHRLLHTVKMVQNGIR------PE-GIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp -------------CCTGGGHHHHHHHHHHCTTCCEEECCSSCCC------HH-HHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred -------------CCCcHHHHHHHHHHHhCCCcCEEECcCCCCC------Hh-HHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 1100111111233667789999999888752 00 1111233 778899999999999986
Q ss_pred ----CCCCCCCCCCCCCCccEEEeecCCCCCC----CC-CC--CCCCccceeeecCccceee-----eCccccCCCCCCC
Q 044382 300 ----TKFPTWLGDSSFLNLVTLKFEDCGMCTA----LP-SV--GQLPSLKHLTVRGMSRVNR-----LGSKFYGDDSPIP 363 (543)
Q Consensus 300 ----~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~--~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~ 363 (543)
..++..+.. +++|++|++++|..... ++ .+ +.+++|++|++++|. ++. ++... ...
T Consensus 230 ~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-----~~~ 301 (386)
T 2ca6_A 230 HLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-----DEK 301 (386)
T ss_dssp HHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-----HHH
T ss_pred cHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-----Hhc
Confidence 334554544 78999999999975432 22 33 458999999999984 333 22221 123
Q ss_pred CCCcCeeeccCcc
Q 044382 364 FPCLETLRFEDLQ 376 (543)
Q Consensus 364 ~~~L~~L~l~~~~ 376 (543)
+++|++|++.++.
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 7999999999864
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.8e-15 Score=143.29 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=73.2
Q ss_pred ccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceee
Q 044382 101 FKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLN 180 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 180 (543)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 367788888888888887754 7788888888888888888766 888888888888887 4555554 78888888888
Q ss_pred cCCCCCcccccccccccccccccc
Q 044382 181 DSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 181 l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|. +..+ ..+..+++|+.|+
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEE
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEE
Confidence 88887 5544 2344555555553
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=7.1e-15 Score=140.88 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=153.0
Q ss_pred CceEEEeeccccCCccc--hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-C----c
Q 044382 49 NLRHLSYIPEYFDGGKR--FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-P----D 121 (543)
Q Consensus 49 ~~~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p----~ 121 (543)
.++++.+....+..... +..+..+++|+.|. +++|.+.+..+..++. ..+++|++|++++|.++.. + .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~---l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELT---LEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEE---EESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEE---eeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHH
Confidence 46788887766532211 11222345566664 8999888754444431 5899999999999998853 2 2
Q ss_pred cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhh--hhHH--HhhhcccceeecCCCCCccccccc---
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKK--LCAD--MGNLIKLHHLNDSNTDSLEEMPLG--- 193 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--l~~~--~~~l~~L~~L~l~~~~~~~~lp~~--- 193 (543)
.+..+++|++|++++|.++.+| ..+..+++|++|++++|...+. ++.. ++.+++|++|++++|. ++.++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 3467999999999999999774 6788999999999999854432 3322 3689999999999999 6655542
Q ss_pred -cccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecCCCCCCCcc
Q 044382 194 -IGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCSTDGLSSTE 272 (543)
Q Consensus 194 -l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 272 (543)
++.+++|++|++..+.... . .... ...+..+++|++|++++|..+..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~------------------------~--~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp---- 267 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRA------------------------T--VNPS-APRCMWSSALNSLNLSFAGLEQVP---- 267 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCC------------------------C--CCSC-CSSCCCCTTCCCEECCSSCCCSCC----
T ss_pred HHhcCCCCCEEECCCCCCCc------------------------c--chhh-HHhccCcCcCCEEECCCCCCCchh----
Confidence 4566777777543222110 0 0000 001233478999999988875332
Q ss_pred cccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCC
Q 044382 273 AETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 273 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 325 (543)
..+ .++|+.|++++|....+|. +. .+++|+.|++++|...
T Consensus 268 --------~~~--~~~L~~L~Ls~N~l~~~~~-~~--~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 268 --------KGL--PAKLRVLDLSSNRLNRAPQ-PD--ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp --------SCC--CSCCSCEECCSCCCCSCCC-TT--SCCCCSCEECSSTTTS
T ss_pred --------hhh--cCCCCEEECCCCcCCCCch-hh--hCCCccEEECcCCCCC
Confidence 122 3799999999999887655 33 4889999999998653
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.1e-14 Score=134.99 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=123.2
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++.++++|++..|.+..... ..+..+++|++|. +++|.+.+ ++ +..|..+++|++|++++|.++.+|.
T Consensus 30 p~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~---L~~n~l~~-~~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 30 PSGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLN---LDYNQLQT-LS---AGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEE---CTTSCCCC-CC---TTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEE---CCCCcCCc-cC---HhHhccCCcCCEEECCCCcccccChh
Confidence 34567889999999998876654 5566777777775 88898886 22 2334589999999999999988764
Q ss_pred cccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCcccccc-cccccc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPL-GIGKLT 198 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~ 198 (543)
.|..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|. .+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 578999999999999999988665 578999999999997 5556654 58889999999999999 566654 578888
Q ss_pred ccccccceEec
Q 044382 199 CLQTLCNFVVG 209 (543)
Q Consensus 199 ~L~~L~~~~~~ 209 (543)
+|+.|++..+.
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888655443
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=4.8e-14 Score=130.63 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=35.6
Q ss_pred eeeEEEecCCCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeec
Q 044382 105 RLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLND 181 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l 181 (543)
.+++|++++|.++.++ ..|..+++|++|++++|.++.++ ..+..+++|++|++++|. +..+| ..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEc
Confidence 4455555555544442 23445555555555555554442 224444444444444442 22222 22344444444444
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
++|.
T Consensus 115 ~~N~ 118 (251)
T 3m19_A 115 GGNQ 118 (251)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4444
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=2.8e-14 Score=126.84 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=117.2
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccccC
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSIGD 125 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~~~ 125 (543)
..++++|++..|.+... ..+..+++|++|. +++|.+.. ++.+..+++|++|++++|.++. .|..++.
T Consensus 43 l~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~---l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL---TGIEYAHNIKDLT---INNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCSCC---TTGGGCTTCSEEE---EESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCccCh---HHHhcCCCCCEEE---ccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 36789999999988643 3466677777776 77775543 3466689999999999999885 5777899
Q ss_pred cccccEEecCCCCccc-cchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccccccccccc
Q 044382 126 LRYLRYLNLSGTVIRT-LPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLC 204 (543)
Q Consensus 126 l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 204 (543)
+++|++|++++|.++. .|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEE
Confidence 9999999999999985 57888999999999999986577777 48899999999999998 66666 678888888886
Q ss_pred ceE
Q 044382 205 NFV 207 (543)
Q Consensus 205 ~~~ 207 (543)
+..
T Consensus 188 l~~ 190 (197)
T 4ezg_A 188 AFS 190 (197)
T ss_dssp ECB
T ss_pred eeC
Confidence 543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=6.5e-15 Score=152.99 Aligned_cols=172 Identities=20% Similarity=0.197 Sum_probs=107.6
Q ss_pred cccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 100 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 100 ~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
+..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.+|. +..+++|+.|++++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 346677788888888777765 47778888888888887777765 777888888888876 455555 47777888888
Q ss_pred ecCCCCCccccccccccccccccccceEecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeee
Q 044382 180 NDSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSL 259 (543)
Q Consensus 180 ~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 259 (543)
++++|. +..++ .+..+++|+.|++..+.. . . . ..+..+++|+.|++
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l---------------~---------~---l-----~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKI---------------T---------D---I-----TVLSRLTKLDTLSL 160 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSSCC---------------C---------C---C-----GGGGSCTTCSEEEC
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCCcc---------------C---------C---c-----hhhcccCCCCEEEC
Confidence 888777 54443 355556666554321110 0 0 0 11555667777777
Q ss_pred eeecCCCCCCCcccccHHHHhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCC
Q 044382 260 NWTCSTDGLSSTEAETEKDVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMC 325 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 325 (543)
++|..... ..+..+++|+.|++++|.+..++. +. .+++|+.|++++|...
T Consensus 161 s~N~l~~~-------------~~l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDI-------------VPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCC-------------GGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred cCCcCCCc-------------hhhccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 76665211 115556677777777766555432 33 2666777777666543
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=2.8e-15 Score=147.04 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=50.2
Q ss_pred cCCCccccccccccccccccCC-eeeEEEecCCCcccc-CccccCc-----ccccEEecCCCCcccc-chhh----hcc-
Q 044382 83 LSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYEL-PDSIGDL-----RYLRYLNLSGTVIRTL-PESV----NKL- 149 (543)
Q Consensus 83 l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~l-p~~~~~l-----~~L~~L~L~~~~i~~l-p~~~----~~l- 149 (543)
+++|.+.+..+..+...+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.++.. +..+ ..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 108 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence 6666555433223334444555 566666666665543 2233332 5666666666665543 2222 222
Q ss_pred cccceeecCCCchhhhhhHHHh----h-hcccceeecCCCC
Q 044382 150 YNLHTLLLEGCRRLKKLCADMG----N-LIKLHHLNDSNTD 185 (543)
Q Consensus 150 ~~L~~L~l~~~~~~~~l~~~~~----~-l~~L~~L~l~~~~ 185 (543)
++|++|++++|......+..+. . .++|++|++++|.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 5666666666532222222222 2 2466666666665
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=8.4e-15 Score=143.62 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=80.0
Q ss_pred CCCCCceEEEeeccccCCccc---hhhhhcCC-CceEEeecccCCCccccccccccccccccC-CeeeEEEecCCCcccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKR---FEDLYDIQ-HLRTFLPVRLSNGFLSGYLACSILPKLFKL-QRLRVFSLRGYHIYEL 119 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~---~~~~~~~~-~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~l 119 (543)
..+.++++|+++.|.+..... ...+..++ +|++|. +++|.+.+..+..+...+... ++|++|++++|.++..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN---LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEE---CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEE---CcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 445567777777777654332 13444455 555554 777777653333333222232 7777777777777654
Q ss_pred Cc-c----ccCc-ccccEEecCCCCccccch-hhh----c-ccccceeecCCCchhh----hhhHHHhhhc-ccceeecC
Q 044382 120 PD-S----IGDL-RYLRYLNLSGTVIRTLPE-SVN----K-LYNLHTLLLEGCRRLK----KLCADMGNLI-KLHHLNDS 182 (543)
Q Consensus 120 p~-~----~~~l-~~L~~L~L~~~~i~~lp~-~~~----~-l~~L~~L~l~~~~~~~----~l~~~~~~l~-~L~~L~l~ 182 (543)
+. . +..+ ++|++|++++|.++..+. .+. . .++|++|++++|.... .++..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 32 2 3344 677777777777775532 222 2 2577777777764331 3444455554 77777777
Q ss_pred CCC
Q 044382 183 NTD 185 (543)
Q Consensus 183 ~~~ 185 (543)
+|.
T Consensus 176 ~n~ 178 (362)
T 3goz_A 176 GNN 178 (362)
T ss_dssp TSC
T ss_pred CCC
Confidence 777
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=9.9e-14 Score=119.93 Aligned_cols=137 Identities=26% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSI 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~ 123 (543)
..+.++++|++.+|.+........+..+++|+.|. +++|.+.+. ..+..+++|++|++++|.++. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~---l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS---LINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE---EESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEe---CcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 44577888888888765111112234555555554 777776641 455577888888888888776 56666
Q ss_pred cCcccccEEecCCCCccccc--hhhhcccccceeecCCCchhhhhhH----HHhhhcccceeecCCCCCcccccc
Q 044382 124 GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGCRRLKKLCA----DMGNLIKLHHLNDSNTDSLEEMPL 192 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~lp~ 192 (543)
..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++.+|. ..++|.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 67888888888888887765 56777888888888876 4444443 56778888888888877 665554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=1.3e-13 Score=124.63 Aligned_cols=131 Identities=22% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-cc
Q 044382 46 FPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IG 124 (543)
Q Consensus 46 ~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~ 124 (543)
++.++++|++..|.+..... ..+..+++|+.|. +++|.+.+ ..+..|..+++|++|+|++|.++.+|.. |.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~---Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPP-GAFSPYKKLRRID---LSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEE---CCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEE---CCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 33445555555554433322 2333333333332 44444443 1122233444555555555554444332 34
Q ss_pred CcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCC
Q 044382 125 DLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 185 (543)
.+++|++|+|++|.++.+ |..+..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 445555555555544444 333444445555555444 222222 224444444455544444
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.9e-13 Score=124.49 Aligned_cols=101 Identities=24% Similarity=0.381 Sum_probs=53.8
Q ss_pred cCCeeeEEEecCCCccccCc-cccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhccccee
Q 044382 102 KLQRLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHL 179 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 179 (543)
.+++|++|+|++|.++.+|. .|..+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEE
Confidence 55555555555555555543 245555555555555555555332 345555555555554 344555555555555555
Q ss_pred ecCCCCCcccccc-cccccccccccc
Q 044382 180 NDSNTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 180 ~l~~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
++++|. +..+|. .+..+++|+.|+
T Consensus 141 ~L~~N~-l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 141 ALDQNQ-LKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEE
Confidence 555555 444442 245555555554
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.6e-14 Score=132.16 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=56.1
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
+++.+..+++.+|.+.+ ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~-----~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-----LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-----EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc-----cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 34444444455555553 11 3345666666666666666655 45666666666666666666654 56666666
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+|++++| .+..+|. +.. ++|++|++++|.
T Consensus 89 ~L~L~~N-~l~~l~~-~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 89 ELSVNRN-RLKNLNG-IPS-ACLSRLFLDNNE 117 (263)
T ss_dssp EEECCSS-CCSCCTT-CCC-SSCCEEECCSSC
T ss_pred EEECCCC-ccCCcCc-ccc-CcccEEEccCCc
Confidence 6666665 3444443 222 566666666655
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=124.05 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-cccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD-SIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~~~~l~~L 129 (543)
++++++.|.+..+.. .+ ...++.| ++++|.+.+..+..++. .+++|++|++++|.++.++. .|..+++|
T Consensus 14 ~~l~~s~n~l~~iP~--~~--~~~~~~L---~L~~N~l~~~~~~~~~~---~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE--HI--PQYTAEL---RLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCSEE---ECCSSCCCEECCCCCGG---GCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcccCcc--CC--CCCCCEE---EcCCCcCCccCchhhhc---cCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 356666665543321 11 1223333 36666666533333333 66777777777777666643 56677777
Q ss_pred cEEecCCCCccccch-hhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccc-ccccccccccccccceE
Q 044382 130 RYLNLSGTVIRTLPE-SVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEM-PLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~ 207 (543)
++|+|++|.++.+|. .+..+++|++|++++|......|..+..+++|++|++++|. +..+ |..+..+++|+.|++..
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 777777777776643 36667777777777764333334556667777777777776 4443 55566666666665433
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.5e-13 Score=128.51 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=115.3
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..++++|++..|.+... ..+..+++|+.|. +++|.+.+. ++ +.++++|++|++++|.++.++. +..+
T Consensus 45 l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~---L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV---QGIQYLPNVTKLF---LNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred cCcccEEEccCCCcccC---hhHhcCCCCCEEE---ccCCccCCC-----cc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 35678888888776544 3355566666664 777777752 22 5578888888888888777654 7788
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.+ +.+..+++|++|++++| .+..+ ..++.+++|++|++++|. +..++. +..+++|+.|++.
T Consensus 112 ~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECC
Confidence 8888888888888876 35777888888888886 45445 347788888888888887 555554 6667777766432
Q ss_pred EecCCCCCChhhhccccccccceecccccCcCCccchhhhccCCccccceeeeeeecC
Q 044382 207 VVGKDSGSGLRELKSLIHLQGTLKISKLENIKDIGDAKEARLDGKKNLKELSLNWTCS 264 (543)
Q Consensus 207 ~~~~~~~~~~~~l~~l~~l~~~L~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (543)
.+.. .. .. .+..+++|+.|++++|..
T Consensus 187 ~N~i------------------------------~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 187 KNHI------------------------------SD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SSCC------------------------------CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CCcC------------------------------CC-Ch-hhccCCCCCEEECcCCcc
Confidence 2210 00 01 167788999999988875
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=123.18 Aligned_cols=139 Identities=15% Similarity=0.079 Sum_probs=112.9
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc-
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD- 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~- 121 (543)
+..++..+++|++..|.+........+..+++|+.|. +++|.+.+ ++. ..|..+++|++|+|++|.++.++.
T Consensus 27 P~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~---L~~N~i~~-i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 27 PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN---FSNNKITD-IEE---GAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEE---CCSSCCCE-ECT---TTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred ccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEE---CCCCcCCE-ECH---HHhCCCCCCCEEECCCCccCccCHh
Confidence 3466778999999999987664435567777877775 89999885 222 245589999999999999998865
Q ss_pred cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcc
Q 044382 122 SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLE 188 (543)
Q Consensus 122 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 188 (543)
.|..+++|++|+|++|.++.+ |..+..+++|++|++++|......|..+..+++|+.|++++|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 589999999999999999988 6778999999999999985444446778899999999999998443
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.6e-13 Score=115.93 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=73.8
Q ss_pred cCCCccc-cccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhcccccceeecCCC
Q 044382 83 LSNGFLS-GYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNKLYNLHTLLLEGC 160 (543)
Q Consensus 83 l~~n~~~-~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~ 160 (543)
+++|.+. + .++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 24 l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 24 LDNSRSNEG----KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CTTCBCBTT----BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred ccCCcCChh----HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 6666555 3 2333344677777777777777666 556777777777777777776 5666666777777777776
Q ss_pred chhhhhh--HHHhhhcccceeecCCCCCcccccc----cccccccccccc
Q 044382 161 RRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLC 204 (543)
Q Consensus 161 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~ 204 (543)
. +..++ ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 99 ~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 99 K-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp C-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred c-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 3 44433 556677777777777776 555544 456666666664
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.2e-13 Score=143.56 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=36.3
Q ss_pred cCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeec
Q 044382 102 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLND 181 (543)
Q Consensus 102 ~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 181 (543)
.+++|++|+|++|.+..+| .+..+++|++|+|++|.++.++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSL 160 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEEC
Confidence 4444555555544444433 3444444555555444444432 2444444555554444 22223 22444444444544
Q ss_pred CCCC
Q 044382 182 SNTD 185 (543)
Q Consensus 182 ~~~~ 185 (543)
++|.
T Consensus 161 s~N~ 164 (605)
T 1m9s_A 161 EDNQ 164 (605)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 4444
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=2.9e-13 Score=116.99 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=105.4
Q ss_pred CCceEEeecccCCCccc-cccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhccc
Q 044382 73 QHLRTFLPVRLSNGFLS-GYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNKLY 150 (543)
Q Consensus 73 ~~L~~L~~~~l~~n~~~-~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~ 150 (543)
++++.|. +++|.+. + .++..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++
T Consensus 24 ~~L~~L~---l~~n~l~~~----~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELV---LDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEE---CCSCBCBTT----BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEE---CCCCCCChh----hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5566665 8999887 4 3444456899999999999999888 778999999999999999997 687788899
Q ss_pred ccceeecCCCchhhhhh--HHHhhhcccceeecCCCCCcccccc----ccccccccccccceEec
Q 044382 151 NLHTLLLEGCRRLKKLC--ADMGNLIKLHHLNDSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 151 ~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~~~~~ 209 (543)
+|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999998 566655 568899999999999999 777776 68889999999765543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3.1e-13 Score=120.05 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=99.5
Q ss_pred hcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccc-cchhhhc
Q 044382 70 YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRT-LPESVNK 148 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~ 148 (543)
.++++++.|. +++|.+.. ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..+..
T Consensus 41 ~~l~~L~~L~---l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYIT---LANINVTD-----LT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEE---EESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEe---ccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 3456666665 78887773 22 4668899999999999876664 68889999999999999985 5788899
Q ss_pred ccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccc
Q 044382 149 LYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCN 205 (543)
Q Consensus 149 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 205 (543)
+++|++|++++|......|..++.+++|++|++++|..++.+| .+..+++|+.|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 9999999999986555577778999999999999997677776 5777778877754
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=7.1e-13 Score=118.94 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=84.4
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++..|.+..... ..+..+++|++|. +++|.+.+ ++...+ ..+++|++|++++|.++.+|..
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPN-GVFDELTSLTQLY---LGGNKLQS-LPNGVF---NKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCTTTT---TTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCcEEEcCCCccCcCCh-hhhcccccCcEEE---CCCCccCc-cChhhc---CCCCCcCEEECCCCcCCccCHhH
Confidence 3455677777777777654432 3445555665554 67776663 222333 3677777777777777766543
Q ss_pred ccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCC
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 56777777777777777766543 567777777777776 3444443 35667777777777776
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.3e-12 Score=121.59 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=110.9
Q ss_pred CCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCc
Q 044382 47 PKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDL 126 (543)
Q Consensus 47 ~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l 126 (543)
..++++|++.+|.+... ..+..+++|+.|. +++|.+.+. ++ +..+++|++|++++|.++.+|... .
T Consensus 40 l~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~---L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~~~~-~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL---AGMQFFTNLKELH---LSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNLNGIP-S- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCC---TTGGGCTTCCEEE---CCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCCTTCC-C-
T ss_pred cCcCcEEECcCCCcccc---hHHhhCCCCCEEE---CCCCccCCC-----hh-hccCCCCCEEECCCCccCCcCccc-c-
Confidence 36788999999877544 3455667777775 888888852 22 668899999999999988876533 3
Q ss_pred ccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCccccccccccccccccccce
Q 044382 127 RYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNF 206 (543)
Q Consensus 127 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 206 (543)
++|++|++++|.++.++ .+..+++|++|++++| .+..++ .++.+++|++|++++|. +..+ ..+..+++|+.|++.
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEE
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCC
Confidence 89999999999988875 5888999999999987 466666 48889999999999998 5555 567788888888765
Q ss_pred Eec
Q 044382 207 VVG 209 (543)
Q Consensus 207 ~~~ 209 (543)
.+.
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=2.7e-13 Score=132.70 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=112.0
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhh-cCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLY-DIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPD 121 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~ 121 (543)
+..++..+++|+++.|.+..... ..+. .+++|+.|. +++|.+.+ ++. ..|..+++|++|+|++|.++.++.
T Consensus 34 P~~~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~---L~~N~i~~-i~~---~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 34 PQSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLL---LSHNHLNF-ISS---EAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp CSSCCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEE---CCSSCCCE-ECT---TTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccCCCCCCEEECCCCCCCccCh-hhhhhcccccCEEE---CCCCcCCc-cCh---hhccCCCCCCEEECCCCcCCcCCH
Confidence 34567788999999998866554 4454 666677665 88888885 222 245588899999999999887755
Q ss_pred -cccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHHH----hhhcccceeecCCCCCcccccc-cc
Q 044382 122 -SIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCADM----GNLIKLHHLNDSNTDSLEEMPL-GI 194 (543)
Q Consensus 122 -~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~~----~~l~~L~~L~l~~~~~~~~lp~-~l 194 (543)
.|..+++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++++|. +..+|. .+
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh
Confidence 578899999999999999877 667888999999999987 566676554 568899999999988 666663 45
Q ss_pred cccccc--cccc
Q 044382 195 GKLTCL--QTLC 204 (543)
Q Consensus 195 ~~l~~L--~~L~ 204 (543)
..++.+ +.|+
T Consensus 184 ~~l~~~~l~~l~ 195 (361)
T 2xot_A 184 QKLPAWVKNGLY 195 (361)
T ss_dssp HHSCHHHHTTEE
T ss_pred hhccHhhcceEE
Confidence 555553 4453
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=7.2e-13 Score=119.82 Aligned_cols=146 Identities=22% Similarity=0.253 Sum_probs=112.4
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.+++.++.+..+.. .+ .+.++.|. +++|.+.+ ++.. .|..+++|++|+|++|.++.+ |..|..+++|
T Consensus 14 ~~v~c~~~~l~~iP~--~l--~~~l~~L~---l~~n~i~~-i~~~---~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT--NL--PETITEIR---LEQNTIKV-IPPG---AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCSSCCS--SC--CTTCCEEE---CCSSCCCE-ECTT---SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcCcCCC--cc--CcCCCEEE---CCCCcCCC-cCHh---HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 456776666544321 12 14566664 99998885 3323 445899999999999999977 7789999999
Q ss_pred cEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc-ccccccccccccceE
Q 044382 130 RYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL-GIGKLTCLQTLCNFV 207 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~ 207 (543)
++|+|++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|. +..++. .+..+++|+.|++..
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 9999999999999765 5789999999999985434345668899999999999999 666665 488888998886544
Q ss_pred e
Q 044382 208 V 208 (543)
Q Consensus 208 ~ 208 (543)
+
T Consensus 162 N 162 (220)
T 2v9t_B 162 N 162 (220)
T ss_dssp S
T ss_pred C
Confidence 4
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7.3e-13 Score=115.32 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=39.4
Q ss_pred ccCCeeeEEEecCCCccccCcc-ccCcccccEEecCCCCccccch--hhhcccccceeecCCCchhhhhhHH----Hhhh
Q 044382 101 FKLQRLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVIRTLPE--SVNKLYNLHTLLLEGCRRLKKLCAD----MGNL 173 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l~~~----~~~l 173 (543)
..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. ++.+
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKV 139 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHC
T ss_pred ccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHC
Confidence 3445555555555555444432 2445555555555555544443 4444555555555544 23333332 4444
Q ss_pred cccceeecCCCC
Q 044382 174 IKLHHLNDSNTD 185 (543)
Q Consensus 174 ~~L~~L~l~~~~ 185 (543)
++|+.|++++|.
T Consensus 140 ~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 140 PQVRVLDFQKVK 151 (176)
T ss_dssp TTCSEETTEECC
T ss_pred CccceeCCCcCC
Confidence 555555554444
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=7.4e-13 Score=111.87 Aligned_cols=129 Identities=26% Similarity=0.259 Sum_probs=104.1
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc-cCccc
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-LPDSI 123 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~~ 123 (543)
..+.++++|++.+|.+........+..+++|+.|. +++|.+.+. ..+..+++|++|++++|.++. +|..+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~---l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS---TINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE---CTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEE---CcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 34578999999999886111113455667777775 999988862 556699999999999999997 77777
Q ss_pred cCcccccEEecCCCCccccc--hhhhcccccceeecCCCchhhhhhH----HHhhhcccceeecCC
Q 044382 124 GDLRYLRYLNLSGTVIRTLP--ESVNKLYNLHTLLLEGCRRLKKLCA----DMGNLIKLHHLNDSN 183 (543)
Q Consensus 124 ~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~ 183 (543)
..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .++.+++|++|++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 88999999999999999875 78999999999999998 5555553 588999999999863
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.5e-12 Score=118.56 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=111.9
Q ss_pred ccCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc
Q 044382 43 QQSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS 122 (543)
Q Consensus 43 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~ 122 (543)
+..++.++++|++++|.+..... ..+..+++|+.|. +++|.+.. ++...+. .+++|++|+|++|.++.+|..
T Consensus 35 p~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~---L~~N~l~~-i~~~~~~---~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 35 PAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELY---LGSNQLGA-LPVGVFD---SLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEE---CCSSCCCC-CCTTTTT---TCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEE---CCCCCCCC-cChhhcc---cCCCcCEEECCCCcCCccChh
Confidence 34577899999999999877654 5566777777775 99998864 4434444 899999999999999988654
Q ss_pred -ccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCCCCc
Q 044382 123 -IGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 123 -~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~ 187 (543)
|..+++|++|++++|.++.+|..+..+++|++|++++| .+..++ ..+..+++|+.|++.+|.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 78999999999999999999999999999999999998 565665 44788999999999999833
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=1.1e-11 Score=127.40 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=99.8
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCc
Q 044382 288 NLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCL 367 (543)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 367 (543)
+++.|+++++....+|..+ +++|++|++++|... .+| ..+++|++|++++| .++.++. + ..+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N-~l~~ip~-l--------~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP--ELPASLEYLDACDN-RLSTLPE-L--------PASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSS-CCSCCCC-C--------CTTC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCC-CCCCcch-h--------hcCC
Confidence 5666666666655555433 246777777776543 455 45677777777776 3333332 1 1167
Q ss_pred CeeeccCcccccccccCCCCCCCCCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCC
Q 044382 368 ETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGC 447 (543)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 447 (543)
++|+++++ .++.+. ..+++|++|++++ |.++ .+|..+++|+.|++.+|....... -.++|+.|++++|
T Consensus 123 ~~L~Ls~N-~l~~lp--------~~l~~L~~L~Ls~-N~l~-~lp~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLP--------ELPALLEYINADN-NQLT-MLPELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTN 190 (571)
T ss_dssp CEEECCSS-CCSCCC--------CCCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CEEECCCC-cCCCCC--------CcCccccEEeCCC-CccC-cCCCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCC
Confidence 77777764 233211 1467888888888 4777 577655666666666654222111 1156666666666
Q ss_pred CCeeeecccCCCCCC-------ceEEEcCCCCCcccCCCcCCCCCCccEEecccC
Q 044382 448 KKVVWRSATDHLGSQ-------NSVVCRDTSNQVFLSGPLKPRIPKLEELKINNI 495 (543)
Q Consensus 448 ~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c 495 (543)
....++. +.. +| ++|++++| .++.+|... ..+++|+.|++++|
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l-~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENI-LSLDPTCTIILEDN 240 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGG-GGSCTTEEEECCSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHH-hcCCCCCEEEeeCC
Confidence 6555555 322 55 66666663 566666553 33666666666663
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.6e-12 Score=133.61 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCc-------cEEEeecCCCCCCCC-CCCCCCccceeeecCcc
Q 044382 287 KNLEQFGICGYGGTKFPTWLGDSSFLNL-------VTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMS 346 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 346 (543)
++|+.|++++|.+..+|. +.. +| +.|++++|... .+| .+..+++|++|++++|+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 455566666655555554 221 34 66666666443 344 45556666666666664
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=2.3e-12 Score=112.17 Aligned_cols=127 Identities=20% Similarity=0.146 Sum_probs=104.1
Q ss_pred hcCCCceEEeecccCCCccccccccccccccccCC-eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhh-h
Q 044382 70 YDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQ-RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESV-N 147 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~ 147 (543)
.+.++++.| ++++|.+.. + +.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+ .
T Consensus 16 ~~~~~L~~L---~l~~n~l~~-i-----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDREL---DLRGYKIPV-I-----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEE---ECTTSCCCS-C-----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCcCCceEE---EeeCCCCch-h-----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 345555555 488888874 2 2233454 999999999999988 67899999999999999999997665 8
Q ss_pred cccccceeecCCCchhhhhhH--HHhhhcccceeecCCCCCccccccc----cccccccccccceEe
Q 044382 148 KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLNDSNTDSLEEMPLG----IGKLTCLQTLCNFVV 208 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~~~~~ 208 (543)
.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. +..+++|+.|+...+
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999998 5677776 68899999999999999 7778875 888999999976554
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=114.46 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=46.4
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~ 182 (543)
.|++|++++|.++.+|..|..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECC
Confidence 445555555555555544555555555555555555442 234455555555555542 22222 234455555555555
Q ss_pred CCCCccccccc-ccccccccccc
Q 044382 183 NTDSLEEMPLG-IGKLTCLQTLC 204 (543)
Q Consensus 183 ~~~~~~~lp~~-l~~l~~L~~L~ 204 (543)
+|. +..+|.+ +..+++|+.|+
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCC-CCeeChhhhhcCccccEEE
Confidence 555 3444432 44444444443
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=6.9e-12 Score=112.43 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=105.1
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-ccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~L 129 (543)
+.+++..+.+..... .+ .++++.|. +++|.+.+ ++..+ |..+++|++|++++|.++.+|.. |..+++|
T Consensus 10 ~~v~c~~~~l~~~p~--~~--~~~l~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT--GI--PAQTTYLD---LETNSLKS-LPNGV---FDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCC--CC--CCCCcEEE---cCCCccCc-CChhh---hcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 455666655433321 11 34566664 88888874 33333 34889999999999999888654 6899999
Q ss_pred cEEecCCCCccccchh-hhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCCCccccccc-cccccccccccce
Q 044382 130 RYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTDSLEEMPLG-IGKLTCLQTLCNF 206 (543)
Q Consensus 130 ~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~~~ 206 (543)
++|++++|.++.+|.. +..+++|++|++++| .+..++. .+..+++|++|++++|. +..+|.. +..+++|+.|++.
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEec
Confidence 9999999999988654 688999999999997 4555554 46789999999999998 6666654 7778888877543
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.9e-11 Score=119.52 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=66.1
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeee-ecccCCCCCCceEEEcC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRD 469 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 469 (543)
..+++|++|+|++ |+++ .++. ..+..+++|+.|+|++|....+ +..+..+++|++|++++
T Consensus 85 ~~l~~L~~L~Ls~-N~l~-~~~~-----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 85 VPVPNLRYLDLSS-NHLH-TLDE-----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp TTCTTCCEEECCS-SCCC-EECT-----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCC-CcCC-cCCH-----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 4566666666666 3555 2221 1233455666666666665544 34566677777777777
Q ss_pred CCCCcccCCCcC---CCCCCccEEecccCCCCccccccCccccccCCc--cceEeeccCC
Q 044382 470 TSNQVFLSGPLK---PRIPKLEELKINNIQNETCIWKSHNELLQDICS--LKRLLITSCP 524 (543)
Q Consensus 470 c~~l~~l~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~--L~~L~l~~c~ 524 (543)
| .++.+|...+ ..+++|+.|++++ ++++.++ +..+..++. |+.|+++++|
T Consensus 146 N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~---~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 146 N-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLP---LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp S-CCCSCCGGGTC----CTTCCEEECCS-SCCCCCC---HHHHHHSCHHHHTTEECCSSC
T ss_pred C-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccC---HHHhhhccHhhcceEEecCCC
Confidence 3 6667776655 4577777777777 5677775 235565665 3677777753
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=3.2e-12 Score=112.88 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=82.2
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L 129 (543)
+.++++.+.+..+.. .+ ...++.| ++++|.+.+..+..+ |..+++|++|+|++|.++.+ |..|..+++|
T Consensus 11 ~~l~~s~~~l~~ip~--~~--~~~l~~L---~l~~n~i~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR--DI--PLHTTEL---LLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCS--CC--CTTCSEE---ECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCcc--CC--CCCCCEE---ECCCCcCCccCCccc---cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 567777776643322 12 1245555 377777765322223 33777788888888777766 5567777788
Q ss_pred cEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCc
Q 044382 130 RYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 130 ~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 187 (543)
++|+|++|.++.++ ..+..+++|++|++++|...+..|..+..+++|++|++++|.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888888777664 34677777888888777444444556777777777777777743
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=6.7e-12 Score=110.81 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCccccCcc--ccCcccccEEecCCCCcccc-chhhhcccccceeecC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS--IGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLE 158 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~--~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 158 (543)
++++|.+.. +|..++. .+++|++++|.++.++.. |..+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 14 ~~s~~~l~~-ip~~~~~------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 14 DCTGRGLKE-IPRDIPL------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ECTTSCCSS-CCSCCCT------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EcCCCCcCc-CccCCCC------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 466666652 4433333 677777777777766542 67777777777777777766 5667777777777777
Q ss_pred CCchhhhhh-HHHhhhcccceeecCCCCCccccccccccccccccccceEe
Q 044382 159 GCRRLKKLC-ADMGNLIKLHHLNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 159 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
+|. +..++ ..+..+++|++|++++|.+.+..|..+..+++|+.|++..+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 764 43333 34667777777777777744444566777777777754433
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=2.1e-12 Score=137.62 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=82.5
Q ss_pred ccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccce
Q 044382 99 KLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHH 178 (543)
Q Consensus 99 ~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 178 (543)
.+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++.+++|++|++++|. +..+|..++.+++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 444778888888888888777777777888888888888888888888888888888888874 5577777888888888
Q ss_pred eecCCCCCccccccccccccccccccceEe
Q 044382 179 LNDSNTDSLEEMPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 179 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 208 (543)
|++++|. ++.+|.+|+.+++|+.|++..+
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred EECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 8888887 6677877888888888765433
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.9e-12 Score=137.98 Aligned_cols=119 Identities=26% Similarity=0.334 Sum_probs=94.2
Q ss_pred hhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhc
Q 044382 69 LYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNK 148 (543)
Q Consensus 69 ~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~ 148 (543)
+..++.|+.| ++++|.+.. ++..+..+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+|..++.
T Consensus 220 ~~~l~~L~~L---~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHAL---DLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp --CCCCCCEE---ECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hccCCCCcEE---ECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 3344444444 588888873 34444578899999999999998898899999999999999999999999999
Q ss_pred ccccceeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccccccc
Q 044382 149 LYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPLGIGK 196 (543)
Q Consensus 149 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~ 196 (543)
|++|++|++++| .+..+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999997 56788888899999999999999955555555443
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=7.1e-12 Score=129.38 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=63.0
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccceeecCCCchhhhhhHHHhhhcccceeecCCC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 184 (543)
.|++|++++|.++.+|. ++.+++|++|+|++|.++.+|..++.+++|++|++++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 46666666666666665 66666666666666666666666666666666666665 344455 4666666666666666
Q ss_pred CCcccc--ccccccccccccccceE
Q 044382 185 DSLEEM--PLGIGKLTCLQTLCNFV 207 (543)
Q Consensus 185 ~~~~~l--p~~l~~l~~L~~L~~~~ 207 (543)
. +..+ |..++.+++|+.|++..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecC
Confidence 6 4444 56666666666665433
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=6.6e-13 Score=118.07 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=84.5
Q ss_pred hhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhh
Q 044382 68 DLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVN 147 (543)
Q Consensus 68 ~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~ 147 (543)
.+..+++|+.|. +++|.+.+ + + .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+.
T Consensus 43 ~~~~l~~L~~L~---ls~n~l~~-l----~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLA---LSTNNIEK-I----S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEE---CSEEEESC-C----C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HHhcCCCCCEEE---CCCCCCcc-c----c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 555666666665 77777664 2 2 455777888888888877777776667778888888888777776 577
Q ss_pred cccccceeecCCCchhhhhhH--HHhhhcccceeecCCCCCccccccc----------ccccccccccc
Q 044382 148 KLYNLHTLLLEGCRRLKKLCA--DMGNLIKLHHLNDSNTDSLEEMPLG----------IGKLTCLQTLC 204 (543)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~----------l~~l~~L~~L~ 204 (543)
.+++|++|++++| .+..++. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7788888888776 4444432 4677778888888877733333321 45555665553
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=2.2e-13 Score=121.10 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=102.7
Q ss_pred eEEeecccCCCccccccc--cccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 76 RTFLPVRLSNGFLSGYLA--CSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 76 ~~L~~~~l~~n~~~~~~~--~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
..+..++++.+.+.+.++ ..++..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 344444577777776433 123336779999999999999999988 88999999999999999999999888999999
Q ss_pred eeecCCCchhhhhhHHHhhhcccceeecCCCCCcccccc--ccccccccccccc
Q 044382 154 TLLLEGCRRLKKLCADMGNLIKLHHLNDSNTDSLEEMPL--GIGKLTCLQTLCN 205 (543)
Q Consensus 154 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~~ 205 (543)
+|++++| .+..+| .++.+++|++|++++|. +..++. .+..+++|+.|++
T Consensus 97 ~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 97 ELWISYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEEEEEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred EEECcCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 9999998 566677 58999999999999999 666553 5777888888754
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=6.8e-11 Score=104.25 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=89.2
Q ss_pred eEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC-ccccCcccc
Q 044382 51 RHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-DSIGDLRYL 129 (543)
Q Consensus 51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~~~~l~~L 129 (543)
+.+++..+.+..+.. .+ .++++.|. +++|.+.. ++..|.++++|++|+|++|.++.++ ..|..+++|
T Consensus 13 ~~l~~~~~~l~~ip~--~~--~~~l~~L~---L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK--GI--PRDVTELY---LDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCS--CC--CTTCCEEE---CCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCC--CC--CCCCCEEE---CCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 466777776644321 12 24555554 88887773 3345568888899999888888775 458888899
Q ss_pred cEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhH-HHhhhcccceeecCCCC
Q 044382 130 RYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 130 ~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++.+|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 99999988888875 46788888999999887 4556654 46788889999988887
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=3.6e-10 Score=108.96 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=41.1
Q ss_pred cCCCCccceEEEcCCCCeeeecccCCCCCCc-eEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccccc
Q 044382 433 IASLPALCKMEIGGCKKVVWRSATDHLGSQN-SVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 511 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 511 (543)
+..+++|+.+++.++-...-..+|.++++|+ ++.+.+ .++.++..+|.++++|++|++++ ++++.|+ +..+.+
T Consensus 246 F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~---~~aF~~ 319 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLG---DELFGN 319 (329)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEEC---TTTTCT
T ss_pred hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccc---hhhhcC
Confidence 3335555555555541111223455555555 555555 45555555555555555555555 4555554 225555
Q ss_pred CCccceEe
Q 044382 512 ICSLKRLL 519 (543)
Q Consensus 512 l~~L~~L~ 519 (543)
+++|+.++
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 55555554
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=3e-11 Score=104.55 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=74.9
Q ss_pred cccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchh-hhcccccceeecC
Q 044382 81 VRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLE 158 (543)
Q Consensus 81 ~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~ 158 (543)
+++++|.+.. +|..++ ++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 17 l~~~~n~l~~-iP~~~~------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 17 VNCQNIRLAS-VPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp EECCSSCCSS-CCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEeCCCCCCc-cCCCcC------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3577777653 333333 4788888888888876 55678888888888888888888665 4678888888888
Q ss_pred CCchhhhhhHH-HhhhcccceeecCCCCCcccccccc
Q 044382 159 GCRRLKKLCAD-MGNLIKLHHLNDSNTDSLEEMPLGI 194 (543)
Q Consensus 159 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~l 194 (543)
+| .+..+|.. +..+++|++|++++|. +.-.+..+
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDI 124 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGG
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCC-cccccccH
Confidence 86 45566654 7778888888888887 54444433
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=1e-10 Score=120.70 Aligned_cols=118 Identities=23% Similarity=0.249 Sum_probs=99.7
Q ss_pred CceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCccccCcccccEEecCCCCccccchhhhcccccc
Q 044382 74 HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTLPESVNKLYNLH 153 (543)
Q Consensus 74 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 153 (543)
.|+.| ++++|.+.+ + + .++.+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+| .++.+++|+
T Consensus 442 ~L~~L---~Ls~n~l~~-l----p-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVL---HLAHKDLTV-L----C-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp TCSEE---ECTTSCCSS-C----C-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred CceEE---EecCCCCCC-C----c-CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 45555 599999886 3 2 266999999999999999999999999999999999999999998 899999999
Q ss_pred eeecCCCchhhhh--hHHHhhhcccceeecCCCCCccccccccc----cccccccc
Q 044382 154 TLLLEGCRRLKKL--CADMGNLIKLHHLNDSNTDSLEEMPLGIG----KLTCLQTL 203 (543)
Q Consensus 154 ~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~lp~~l~----~l~~L~~L 203 (543)
+|++++|. +..+ |..++.+++|+.|++++|. +..+|+.+. .+++|+.|
T Consensus 512 ~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 512 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999984 5555 8889999999999999999 666665543 36677766
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=2.2e-10 Score=99.67 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=75.3
Q ss_pred ceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-ccCccc
Q 044382 50 LRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS-IGDLRY 128 (543)
Q Consensus 50 ~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-~~~l~~ 128 (543)
.+.+++..+.+..... . -.+.++.|. +++|.+.+ ++... |..+++|++|++++|.++.+|.. +..+++
T Consensus 9 ~~~l~~~~~~l~~~p~--~--~~~~l~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT--G--IPSSATRLE---LESNKLQS-LPHGV---FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCT--T--CCTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCC--C--CCCCCcEEE---eCCCcccE-eCHHH---hcCcccccEEECCCCcceEeChhHccCCCc
Confidence 3456666655533321 1 123455553 66666664 22222 33677777777777777766543 567777
Q ss_pred ccEEecCCCCccccchh-hhcccccceeecCCCchhhhhhHH-HhhhcccceeecCCCC
Q 044382 129 LRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSNTD 185 (543)
Q Consensus 129 L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 185 (543)
|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 77777777777766543 566777777777776 44455543 4567777777777776
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=7.1e-10 Score=106.86 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCCCCCCccEEEeecCCCCCCCC--CCCCCCccc-eeeecC
Q 044382 286 HKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLK-HLTVRG 344 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~-~L~l~~ 344 (543)
+++|+.+++.++....++..... .+++|+.+++.++ +..++ .+..|++|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 56677777776665555554332 3666777777664 33333 456666666 666654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=1.5e-10 Score=99.86 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=64.5
Q ss_pred ccCCCccccccccccccccccCCeeeEEEecCCCcccc-CccccCcccccEEecCCCCccccchh-hhcccccceeecCC
Q 044382 82 RLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEG 159 (543)
Q Consensus 82 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~ 159 (543)
++++|.+.. +|..++ +.|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +..+++|++|++++
T Consensus 15 ~~s~n~l~~-ip~~~~------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 15 DCSGKSLAS-VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ECTTSCCSS-CCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCCcCc-cCccCC------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 466666663 333333 4677777777777766 44577777777777777777777554 46777777777777
Q ss_pred CchhhhhhH-HHhhhcccceeecCCCC
Q 044382 160 CRRLKKLCA-DMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 160 ~~~~~~l~~-~~~~l~~L~~L~l~~~~ 185 (543)
| .+..+|. .+..+++|++|++++|.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6 4555554 36677777777777776
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=5.1e-10 Score=97.29 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=92.5
Q ss_pred cCCCCCceEEEeeccccCCccchhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccCcc-
Q 044382 44 QSFPKNLRHLSYIPEYFDGGKRFEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELPDS- 122 (543)
Q Consensus 44 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~- 122 (543)
..++.++++|++.+|.+..... ..+..+++|++|. +++|.+.+ ++... |..+++|++|++++|.++.+|..
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~---l~~n~l~~-~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 24 TGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLS---LSQNQIQS-LPDGV---FDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp TTCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEE---CCSSCCCC-CCTTT---TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCcEEEeCCCcccEeCH-HHhcCcccccEEE---CCCCcceE-eChhH---ccCCCccCEEECCCCCccccCHHH
Confidence 4567899999999999876543 4566677777775 99998885 33333 44899999999999999988664
Q ss_pred ccCcccccEEecCCCCccccchh-hhcccccceeecCCCchhhhh
Q 044382 123 IGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRRLKKL 166 (543)
Q Consensus 123 ~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~l 166 (543)
+..+++|++|++++|.++.+|.. +..+++|++|++++|......
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 78999999999999999999766 578999999999998654433
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=2.3e-08 Score=98.89 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=54.2
Q ss_pred ccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCcccccc
Q 044382 432 SIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 511 (543)
Q Consensus 432 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 511 (543)
.+..+.+|+.+.+..+-...-..++.++++|+++.|.+ .++.++..+|.++.+|+.+.+.. .++.|. ...+.+
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~---~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG---ANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTBTT
T ss_pred cccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh---HHHhhC
Confidence 34446667777665442222334666777777777764 46777777777777777777765 377775 336777
Q ss_pred CCccceEeecc
Q 044382 512 ICSLKRLLITS 522 (543)
Q Consensus 512 l~~L~~L~l~~ 522 (543)
+++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77777777643
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=6e-10 Score=96.33 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=86.0
Q ss_pred eeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecCC
Q 044382 106 LRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDSN 183 (543)
Q Consensus 106 L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~ 183 (543)
-+.++++++.++.+|..+. ++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3789999999999998774 8999999999999988 667899999999999998 56677765 57999999999999
Q ss_pred CCCccccccc-cccccccccccceEec
Q 044382 184 TDSLEEMPLG-IGKLTCLQTLCNFVVG 209 (543)
Q Consensus 184 ~~~~~~lp~~-l~~l~~L~~L~~~~~~ 209 (543)
|. +..+|.+ +..+++|+.|++..+.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 99 7777765 8889999999765443
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=3.8e-08 Score=97.28 Aligned_cols=165 Identities=10% Similarity=0.067 Sum_probs=89.8
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 390 (543)
..+|+.+.+......-.-..+..+..|+.+.+... ...+.... ......++.+...... + .... .
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~-----F~~~~~l~~~~~~~~~-i----~~~~---F 293 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSL-----FYNCSGLKKVIYGSVI-V----PEKT---F 293 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCT-----TTTCTTCCEEEECSSE-E----CTTT---T
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCC--cceeeccc-----cccccccceeccCcee-e----cccc---c
Confidence 34666666654321111114556777777777543 12222111 1224445444443211 1 1111 3
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDT 470 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c 470 (543)
..+.+|+.+.+.. .++ .++. ..+..+.+|+.++|...-...-..+|.++++|+++.+..
T Consensus 294 ~~~~~L~~i~l~~--~i~-~I~~-----------------~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~- 352 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVK-FIGE-----------------EAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL- 352 (394)
T ss_dssp TTCTTCCEEEECT--TCC-EECT-----------------TTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT-
T ss_pred ccccccccccccc--ccc-eech-----------------hhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc-
Confidence 4566677776654 243 2221 134445566666664331111235788899999999976
Q ss_pred CCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceE
Q 044382 471 SNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 518 (543)
Q Consensus 471 ~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L 518 (543)
.++.++..+|.++.+|+.+++.. .++.+ ...+.++++|+.+
T Consensus 353 -~l~~I~~~aF~~C~~L~~i~lp~--~~~~~----~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 -SLRKIGANAFQGCINLKKVELPK--RLEQY----RYDFEDTTKFKWI 393 (394)
T ss_dssp -TCCEECTTTBTTCTTCCEEEEEG--GGGGG----GGGBCTTCEEEEE
T ss_pred -cccEehHHHhhCCCCCCEEEECC--CCEEh----hheecCCCCCcEE
Confidence 48889888899999999999975 45555 2245556666554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=5.8e-10 Score=96.07 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=85.8
Q ss_pred eeeEEEecCCCccccCccccCcccccEEecCCCCcccc-chhhhcccccceeecCCCchhhhhhHH-HhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTVIRTL-PESVNKLYNLHTLLLEGCRRLKKLCAD-MGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~ 182 (543)
..+++++++|.++.+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 4578999999999999876 48999999999999988 667899999999999998 56666654 6899999999999
Q ss_pred CCCCccccccc-cccccccccccceEec
Q 044382 183 NTDSLEEMPLG-IGKLTCLQTLCNFVVG 209 (543)
Q Consensus 183 ~~~~~~~lp~~-l~~l~~L~~L~~~~~~ 209 (543)
+|. +..+|.. +..+++|+.|++..+.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999 7777764 8899999998765443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=8.9e-09 Score=100.01 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=63.5
Q ss_pred ccCCC-ccccccccccccccccCCeeeEEEecC-CCccccC-ccccCcccccEEecCCCCccccc-hhhhcccccceeec
Q 044382 82 RLSNG-FLSGYLACSILPKLFKLQRLRVFSLRG-YHIYELP-DSIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLL 157 (543)
Q Consensus 82 ~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l 157 (543)
+++++ .+.+ +|. +..+.+|++|+|++ |.++.+| ..|..+++|++|+|++|.++.+| ..+..+++|++|+|
T Consensus 14 ~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 14 RCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp ECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35555 5553 233 44677777777775 7777765 45777777777777777777664 45677777777777
Q ss_pred CCCchhhhhhHHHhhhcccceeecCCCC
Q 044382 158 EGCRRLKKLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 158 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 185 (543)
++| .+..+|..+.....|+.|++.+|.
T Consensus 88 ~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 776 455565443333337777777777
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=3.6e-07 Score=89.94 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=26.4
Q ss_pred ccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 455 ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 455 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
+|.++++|+.+.+.+ .++.++..+|.++.+|+.+.+.. +++.|. +..+.++ +|+.+++.+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~---~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN---FSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC---TTSSSSS-CCCEEEECC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc---HHhCCCC-CCCEEEEcC
Confidence 444444444444442 24444444444444444444432 244443 2244444 444444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=2.1e-07 Score=91.61 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=48.9
Q ss_pred eeeEEEecCCCccccCc-cccCcccccEEecCCCCccccc-hhhhcccccceeecCCCchhhhhhHHHhhhcccceeecC
Q 044382 105 RLRVFSLRGYHIYELPD-SIGDLRYLRYLNLSGTVIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCADMGNLIKLHHLNDS 182 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 182 (543)
+|+.+.+..+ ++.++. +|.++ +|+.+.+.. .++.++ ..+..|++|+.+++..| .+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 4666666544 444432 35443 466666654 455552 34556666666666654 444555443335566666665
Q ss_pred CCCCcccccc-cccccccccccc
Q 044382 183 NTDSLEEMPL-GIGKLTCLQTLC 204 (543)
Q Consensus 183 ~~~~~~~lp~-~l~~l~~L~~L~ 204 (543)
.+ +..++. .|..+++|+.+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEE
T ss_pred Cc--hheehhhHhhCCCCCCEEe
Confidence 32 344432 355555555553
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=4.3e-09 Score=102.70 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=100.8
Q ss_pred CCCCCceEEEeeccccCCccchhhhhcC--CCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccccC--
Q 044382 45 SFPKNLRHLSYIPEYFDGGKRFEDLYDI--QHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYELP-- 120 (543)
Q Consensus 45 ~~~~~~~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-- 120 (543)
.+...++.|+++.|.+..... ..+..+ .....|..+++++|.+...-...+.+ .+++|++|+|++|.++...
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---VFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---HHHTEEEEECCSSCCCHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---HHHhccHhhcCCCCCCHHHHH
Confidence 445678899999888754322 333222 11234444458888876532233333 5668899999999887431
Q ss_pred ---ccc-cCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchhh----hhhHHHhhhcccceeecCCCCCc
Q 044382 121 ---DSI-GDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRLK----KLCADMGNLIKLHHLNDSNTDSL 187 (543)
Q Consensus 121 ---~~~-~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~ 187 (543)
..+ ...++|++|+|++|.++. ++..+..+++|++|++++|.... .++..+...++|++|++++|. +
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-A 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-C
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-C
Confidence 222 346789999999998764 45556778889999999875322 234446677889999999988 4
Q ss_pred cc-----cccccccccccccccceEe
Q 044382 188 EE-----MPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 188 ~~-----lp~~l~~l~~L~~L~~~~~ 208 (543)
+. ++..+...++|+.|++..+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 43 2333445567777755433
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=1.6e-08 Score=98.25 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=81.0
Q ss_pred EEEecCC-CccccCccccCcccccEEecCC-CCccccc-hhhhcccccceeecCCCchhhhh-hHHHhhhcccceeecCC
Q 044382 108 VFSLRGY-HIYELPDSIGDLRYLRYLNLSG-TVIRTLP-ESVNKLYNLHTLLLEGCRRLKKL-CADMGNLIKLHHLNDSN 183 (543)
Q Consensus 108 ~L~Ls~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 183 (543)
.++.+++ .++.+|. +..+++|++|+|++ |.++.+| ..+..+++|++|++++|. +..+ |..++++++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999999 99999999999996 9999986 568999999999999985 5545 45689999999999999
Q ss_pred CCCccccccccccccccccccceEec
Q 044382 184 TDSLEEMPLGIGKLTCLQTLCNFVVG 209 (543)
Q Consensus 184 ~~~~~~lp~~l~~l~~L~~L~~~~~~ 209 (543)
|. +..+|..+.....|+.|++..+.
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCC
Confidence 99 77888664433338887654443
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.65 E-value=7.3e-09 Score=87.84 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=58.4
Q ss_pred ccceEEEcCCCCee-eecccCCCCCCceEEEcCCCCCcccCCCcCCCC----CCccEEecccCCCCccccccCccccccC
Q 044382 438 ALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRI----PKLEELKINNIQNETCIWKSHNELLQDI 512 (543)
Q Consensus 438 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~----~~L~~L~l~~c~~l~~l~~~~~~~l~~l 512 (543)
.|+.|++++|.... -...+..+++|++|++++|..+++-.-..+..+ ++|++|++++|.++|.-... .+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhcC
Confidence 34555555554221 112345678888888888887777443334332 46888888888888865432 56678
Q ss_pred CccceEeeccCCCCccc
Q 044382 513 CSLKRLLITSCPKLQSL 529 (543)
Q Consensus 513 ~~L~~L~l~~c~~l~~~ 529 (543)
++|++|++++||.++..
T Consensus 139 ~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCCEEEEESCTTCCCH
T ss_pred CCCCEEECCCCCCCCch
Confidence 88888888888888863
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=1.6e-08 Score=98.55 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=98.2
Q ss_pred CCceEEEeeccccCCccchhhh-hcCCCceEEeecccCCCcccccccccccccc-ccCCeeeEEEecCCCccc-----cC
Q 044382 48 KNLRHLSYIPEYFDGGKRFEDL-YDIQHLRTFLPVRLSNGFLSGYLACSILPKL-FKLQRLRVFSLRGYHIYE-----LP 120 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~Ls~~~l~~-----lp 120 (543)
.++++|+++.|.+..... ..+ ..+++|+ .+++++|.+...-...+...+ ...+.|++|+|++|.++. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~-~~l~~~L~~L~---~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL-RTLLPVFLRAR---KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHH-HHTHHHHHTEE---EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHH-HHHHHHHHhcc---HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 689999999998743322 222 2334454 456999988763322333322 246789999999999874 45
Q ss_pred ccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCchhh----hhhHHHhhhcccceeecCCCCCccc
Q 044382 121 DSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRRLK----KLCADMGNLIKLHHLNDSNTDSLEE 189 (543)
Q Consensus 121 ~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~ 189 (543)
..+..+++|++|+|++|.++. ++..+...++|++|++++|.... .++..+...++|++|++++|. ++.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 556789999999999998874 35667788899999999985432 334445677999999999999 543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=1.6e-05 Score=78.37 Aligned_cols=77 Identities=6% Similarity=0.132 Sum_probs=39.6
Q ss_pred cCC-eeeEEEecCCCccccC-ccccCcccccEEecCCC---Cccccc-hhhhcccccceeecCCCchhhhhhH-HHhhhc
Q 044382 102 KLQ-RLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGT---VIRTLP-ESVNKLYNLHTLLLEGCRRLKKLCA-DMGNLI 174 (543)
Q Consensus 102 ~l~-~L~~L~Ls~~~l~~lp-~~~~~l~~L~~L~L~~~---~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~ 174 (543)
+++ .|+...+..+ ++.+. .+|.+|.+|+.+.+..+ .++.++ ..+..+.+|+.+.+..+ +..++. .+..+.
T Consensus 61 ~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhc
Confidence 553 4677776543 55553 35677777777776654 244443 23445555555554432 222321 234455
Q ss_pred ccceeec
Q 044382 175 KLHHLND 181 (543)
Q Consensus 175 ~L~~L~l 181 (543)
+|+.+.+
T Consensus 138 ~L~~i~l 144 (394)
T 4gt6_A 138 ELDTVTI 144 (394)
T ss_dssp TCCEEEC
T ss_pred ccccccc
Confidence 5555554
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=3.6e-07 Score=77.46 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.0
Q ss_pred cCCCCccceEEEcCCCCeeee--cccCC----CCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCccc
Q 044382 433 IASLPALCKMEIGGCKKVVWR--SATDH----LGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCI 501 (543)
Q Consensus 433 ~~~~~~L~~L~l~~~~~~~~~--~~~~~----~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l 501 (543)
+..+++|++|+|++|..++.. ..+.. .++|++|+|++|+.+++-....+..+++|++|++++|++++..
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 345777777777777765521 11222 3579999999999898855445678899999999999999875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=5.6e-07 Score=86.95 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCCCCceEEEcCCCCCcccCCCc--CCCCCCccEEecccCCCCccccccC-ccccccCCccceEeeccC
Q 044382 458 HLGSQNSVVCRDTSNQVFLSGPL--KPRIPKLEELKINNIQNETCIWKSH-NELLQDICSLKRLLITSC 523 (543)
Q Consensus 458 ~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~-~~~l~~l~~L~~L~l~~c 523 (543)
.+++|++|.+.+|......+... ...+++|++|+++. +.++...... +..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 35677777776653222111110 12456677777765 4555421000 123345667777777666
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=1.3e-06 Score=75.88 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=70.3
Q ss_pred hcCCCceEEeecccCCC-ccccccccccccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc--
Q 044382 70 YDIQHLRTFLPVRLSNG-FLSGYLACSILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-- 141 (543)
Q Consensus 70 ~~~~~L~~L~~~~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-- 141 (543)
...+.|++|. +++| .+...-...+...+...+.|++|+|++|.++. +...+...+.|++|+|++|.++.
T Consensus 33 ~~~~~L~~L~---L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVN---LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEE---CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEE---ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445555554 6666 55542222344445566778888888887763 33445556778888888887763
Q ss_pred ---cchhhhcccccceeec--CCCchhhh----hhHHHhhhcccceeecCCCC
Q 044382 142 ---LPESVNKLYNLHTLLL--EGCRRLKK----LCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 142 ---lp~~~~~l~~L~~L~l--~~~~~~~~----l~~~~~~l~~L~~L~l~~~~ 185 (543)
+...+...+.|++|++ ++|..... +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4555666777888888 66533222 33335556778888888777
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=8.1e-05 Score=73.24 Aligned_cols=107 Identities=7% Similarity=0.148 Sum_probs=71.9
Q ss_pred hhhhcCC-CceEEeecccCCCccccccccccccccccCCeeeEEEecCCC---ccccC-ccccCcccccEEecCCCCccc
Q 044382 67 EDLYDIQ-HLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYH---IYELP-DSIGDLRYLRYLNLSGTVIRT 141 (543)
Q Consensus 67 ~~~~~~~-~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~---l~~lp-~~~~~l~~L~~L~L~~~~i~~ 141 (543)
.+|..+. .|+++. +-.+ +. .|.+.+|. ++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.
T Consensus 57 ~aF~~~~~~L~sI~---iP~s-vt-~Ig~~AF~---~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQ---IPDT-VT-EIGSNAFY---NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTTCCSCCCEEE---ECTT-CC-EECTTTTT---TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hhccCCCCcCEEEE---ECCC-ee-EEhHHHhh---CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4455553 466665 3322 22 24445555 99999999998764 66674 45889999998887644 666
Q ss_pred cc-hhhhcccccceeecCCCchhhhhh-HHHhhhcccceeecCCC
Q 044382 142 LP-ESVNKLYNLHTLLLEGCRRLKKLC-ADMGNLIKLHHLNDSNT 184 (543)
Q Consensus 142 lp-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 184 (543)
++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 64 45788999999999753 34444 33667888888887543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00018 Score=70.26 Aligned_cols=64 Identities=11% Similarity=-0.078 Sum_probs=38.2
Q ss_pred CCCccceEEEcCCCCeee-ecccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEecccCCCCcccc
Q 044382 435 SLPALCKMEIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINNIQNETCIW 502 (543)
Q Consensus 435 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~ 502 (543)
.+++|+.+.+.++....+ ..+|.++++|+++.+.. .++.++..+|.++.+|+++.+.. .++.|.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 344555555544433333 24566677777777754 46667766677777777777754 466664
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=5.1e-06 Score=75.99 Aligned_cols=59 Identities=31% Similarity=0.311 Sum_probs=27.8
Q ss_pred CcccccEEecCCCCcccc---chhhhcccccceeecCCCchhhhhhHHHhhhc--ccceeecCCCC
Q 044382 125 DLRYLRYLNLSGTVIRTL---PESVNKLYNLHTLLLEGCRRLKKLCADMGNLI--KLHHLNDSNTD 185 (543)
Q Consensus 125 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~ 185 (543)
++++|++|+|++|.++.+ |..+..+++|+.|++++| .+..+. .+..+. +|++|++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence 445555555555555433 233445555555555554 232221 123333 55555555555
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=1.6e-06 Score=75.33 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=82.0
Q ss_pred CCCceEEEeecc-ccCCccc---hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----
Q 044382 47 PKNLRHLSYIPE-YFDGGKR---FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE---- 118 (543)
Q Consensus 47 ~~~~~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---- 118 (543)
...+++|++..| .+..... ...+...+.|++| ++++|.+...-...+...+...+.|++|+|++|.++.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L---~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKF---SIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEE---ECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEE---ECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 467999999998 7643221 1333444555555 5999988763333344555577899999999999884
Q ss_pred -cCccccCcccccEEec--CCCCccc-----cchhhhcccccceeecCCCc
Q 044382 119 -LPDSIGDLRYLRYLNL--SGTVIRT-----LPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 -lp~~~~~l~~L~~L~L--~~~~i~~-----lp~~~~~l~~L~~L~l~~~~ 161 (543)
+...+...+.|++|+| ++|.++. +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4566788889999999 8898873 45566777999999999984
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=1.9e-06 Score=78.89 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=61.8
Q ss_pred ccCCeeeEEEecCCCcccc---CccccCcccccEEecCCCCccccchhhhccc--ccceeecCCCchhhhhh-------H
Q 044382 101 FKLQRLRVFSLRGYHIYEL---PDSIGDLRYLRYLNLSGTVIRTLPESVNKLY--NLHTLLLEGCRRLKKLC-------A 168 (543)
Q Consensus 101 ~~l~~L~~L~Ls~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~l~-------~ 168 (543)
.++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3788999999999998865 35567899999999999999877 3355555 89999999986444332 3
Q ss_pred HHhhhcccceeec
Q 044382 169 DMGNLIKLHHLND 181 (543)
Q Consensus 169 ~~~~l~~L~~L~l 181 (543)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4678899998874
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.82 E-value=0.00035 Score=68.26 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=76.6
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCCccceeeecCccceeeeCccccCCCCCCCCCCcCeeeccCcccccccccCCCCCCC
Q 044382 311 FLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVNRLGSKFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGV 390 (543)
Q Consensus 311 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 390 (543)
..+|+.+.+......-.-..+..+..|+.+.+... ++.++... .....+|+.+.+.. .+..+... . +
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~a-----F~~~~~l~~i~l~~--~i~~i~~~-a---F 282 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFL-----LQNCTALKTLNFYA--KVKTVPYL-L---C 282 (379)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT--CCEECTTT-----TTTCTTCCEEEECC--CCSEECTT-T---T
T ss_pred ccccceeeeccceeEEccccccCCccceEEEcCCC--ccEeCccc-----cceeehhccccccc--cceecccc-c---c
Confidence 45666666654311111114556777777777542 44443222 22345566666543 12222111 1 3
Q ss_pred CCCCcccEEeeccCcCccCCCCCCCCCccEEEEecccCcccccCCCCccceEEEcCCCCeeeecccCCCCCCceEEEcCC
Q 044382 391 ERFPKLRELHILRCSKLQGTFPEHLPALEMLVIVECNELSISIASLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDT 470 (543)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~c 470 (543)
..+++|+.+.+.+ +.++ .++. ..+..+.+|+.+.|...-...-..+|.++++|+++.+..
T Consensus 283 ~~c~~L~~i~l~~-~~i~-~I~~-----------------~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~- 342 (379)
T 4h09_A 283 SGCSNLTKVVMDN-SAIE-TLEP-----------------RVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK- 342 (379)
T ss_dssp TTCTTCCEEEECC-TTCC-EECT-----------------TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT-
T ss_pred ccccccccccccc-cccc-eehh-----------------hhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC-
Confidence 5677777777765 3444 3331 134445666666664332211235788899999998865
Q ss_pred CCCcccCCCcCCCCCC
Q 044382 471 SNQVFLSGPLKPRIPK 486 (543)
Q Consensus 471 ~~l~~l~~~~~~~~~~ 486 (543)
.++.+...+|.+++.
T Consensus 343 -~v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 343 -SITLIESGAFEGSSI 357 (379)
T ss_dssp -TCCEECTTTTTTSSC
T ss_pred -ccCEEchhHhhCCCC
Confidence 577888777876643
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=3e-05 Score=74.80 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=92.5
Q ss_pred CCceEEEeeccccCC-----c--cch-hhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCcccc
Q 044382 48 KNLRHLSYIPEYFDG-----G--KRF-EDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYEL 119 (543)
Q Consensus 48 ~~~~~L~l~~~~~~~-----~--~~~-~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l 119 (543)
.+++.|.+....... . ..+ ..+..+++|+.|. +++|... .+++ + .+++|++|++..|.++.-
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~---L~g~~~l-----~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLK---IKGTNNL-----SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEE---EECCBTC-----BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEE---EeCCCCc-----eecc-c-cCCCCcEEEEecCCCChH
Confidence 588889886543211 0 112 3345678888887 5444211 1222 2 378999999988886522
Q ss_pred -Cccc--cCcccccEEecCCC--------Cccccchhh--hcccccceeecCCCchhhhhhHHHh---hhcccceeecCC
Q 044382 120 -PDSI--GDLRYLRYLNLSGT--------VIRTLPESV--NKLYNLHTLLLEGCRRLKKLCADMG---NLIKLHHLNDSN 183 (543)
Q Consensus 120 -p~~~--~~l~~L~~L~L~~~--------~i~~lp~~~--~~l~~L~~L~l~~~~~~~~l~~~~~---~l~~L~~L~l~~ 183 (543)
...+ ..+++|++|+|+.+ .+..+...+ ..+++|++|++++|......+..+. .+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 2223 36889999988531 132332222 3578999999988755444443343 578999999998
Q ss_pred CCCccc-----cccccccccccccccceEe
Q 044382 184 TDSLEE-----MPLGIGKLTCLQTLCNFVV 208 (543)
Q Consensus 184 ~~~~~~-----lp~~l~~l~~L~~L~~~~~ 208 (543)
|. ++. ++.++..+++|+.|++..+
T Consensus 289 n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 289 GV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 88 443 4455566788888876444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0034 Score=50.45 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=16.8
Q ss_pred eeeEEEecCCCccccCcc-ccCcccccEEecCCCCc
Q 044382 105 RLRVFSLRGYHIYELPDS-IGDLRYLRYLNLSGTVI 139 (543)
Q Consensus 105 ~L~~L~Ls~~~l~~lp~~-~~~l~~L~~L~L~~~~i 139 (543)
+|++|+|++|.|+.+|.. |..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555554332 34445555555554433
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.27 E-value=0.0024 Score=55.04 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=50.3
Q ss_pred cccccccCCeeeEEEecCCCccc-----cCccccCcccccEEecCCCCccc-----cchhhhcccccceeecCCCch--h
Q 044382 96 ILPKLFKLQRLRVFSLRGYHIYE-----LPDSIGDLRYLRYLNLSGTVIRT-----LPESVNKLYNLHTLLLEGCRR--L 163 (543)
Q Consensus 96 ~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~--~ 163 (543)
+..++..-..|+.|+|++|.++. +.+.+..-+.|++|+|++|.|+. +.+.+..-+.|++|++++|.. +
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 34444456677777777777662 23334455667777777776662 233444445677777764321 2
Q ss_pred h-----hhhHHHhhhcccceeecCCCC
Q 044382 164 K-----KLCADMGNLIKLHHLNDSNTD 185 (543)
Q Consensus 164 ~-----~l~~~~~~l~~L~~L~l~~~~ 185 (543)
+ .+...+..-+.|+.|++..+.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 223334445567777766554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.87 E-value=0.012 Score=47.14 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=43.1
Q ss_pred eEEEecCCCcc--ccCccccCcccccEEecCCCCccccchh-hhcccccceeecCCCch
Q 044382 107 RVFSLRGYHIY--ELPDSIGDLRYLRYLNLSGTVIRTLPES-VNKLYNLHTLLLEGCRR 162 (543)
Q Consensus 107 ~~L~Ls~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 162 (543)
.+++-+++.++ .+|..+ -.+|++|+|++|.++.+|.. +..+++|++|++++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 888654 34689999999999999654 67889999999998743
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.92 E-value=0.01 Score=51.10 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=77.3
Q ss_pred CCCceEEEeecc-ccCCc--cc-hhhhhcCCCceEEeecccCCCccccccccccccccccCCeeeEEEecCCCccc----
Q 044382 47 PKNLRHLSYIPE-YFDGG--KR-FEDLYDIQHLRTFLPVRLSNGFLSGYLACSILPKLFKLQRLRVFSLRGYHIYE---- 118 (543)
Q Consensus 47 ~~~~~~L~l~~~-~~~~~--~~-~~~~~~~~~L~~L~~~~l~~n~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---- 118 (543)
-..+++|++..+ .+... .. .+.+..-..|+.| ++++|.+...-...+...+..-+.|++|+|++|.|+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L---~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF---SLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEE---ECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEE---EccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 356899999875 55322 11 2444444455555 5999988864444555566677899999999999883
Q ss_pred -cCccccCcccccEEecCCC---Ccc-----ccchhhhcccccceeecCCCc
Q 044382 119 -LPDSIGDLRYLRYLNLSGT---VIR-----TLPESVNKLYNLHTLLLEGCR 161 (543)
Q Consensus 119 -lp~~~~~l~~L~~L~L~~~---~i~-----~lp~~~~~l~~L~~L~l~~~~ 161 (543)
+.+.+..-+.|++|+|+++ .+. .+...+..-+.|..|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3455666677999999865 344 244556677899999998863
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.33 E-value=3 Score=31.16 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=29.9
Q ss_pred cccCCCCCCceEEEcCCCCCcccCCCcCCCCCCccEEeccc
Q 044382 454 SATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELKINN 494 (543)
Q Consensus 454 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~L~~L~l~~ 494 (543)
.+|.++++|+++.|-. .++.+...+|.++.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 4677788888888876 56777777788888888888876
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.57 E-value=4.9 Score=29.91 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCcccCCCcCCCCCCccEEecccCCCCccccccCccccccCCccceEeecc
Q 044382 472 NQVFLSGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLLITS 522 (543)
Q Consensus 472 ~l~~l~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~l~~L~~L~l~~ 522 (543)
.++.|...+|.++.+|+.+.|-. .++.|.. ..+.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~---~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYD---GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCT---TSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcH---HHHhccCCccEEEEcC
Confidence 45666666777777777777765 5777763 3677777777777765
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=58.35 E-value=3.2 Score=42.14 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=23.6
Q ss_pred cccccC-CCCCcEEEchhHHHHHHHhccCceE
Q 044382 2 EVQKSS-NDASRFVMHDLISDLAQWAAGDIYF 32 (543)
Q Consensus 2 ~~~~~~-~~~~~~~mhd~~~~~~~~~~~~~~~ 32 (543)
++|.+. +....|+|||++|++|.+++.+++.
T Consensus 442 Ll~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 442 ALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 445433 3567899999999999999887653
Done!