BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044384
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 31/313 (9%)
Query: 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLE-EQIRL 62
PHV+++P P QGH+ PL + ++ L GF +TFVNT+Y HKR+++S K +
Sbjct: 9 PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNF 68
Query: 63 VSIPDGMEPWEDRNDFGKLIEKFLQVMPRKL----EELIEEIN-SREDEKIDCFIADGNM 117
SIPDG+ P E D + + Q + + EL+ +N S + C ++D M
Sbjct: 69 ESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCM 128
Query: 118 GWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGII----DSHGTPMSMQMFLI-A 172
++++ A++ + +++SSSA S+ V ++ GII +S+ T ++ +
Sbjct: 129 SFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWI 188
Query: 173 PNMPEMNSRDCF----WAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAF- 227
P + +D + D+ + F ++ DR + + N+ ELES+
Sbjct: 189 PGLKNFRLKDIVDFIRTTNPNDIMLE-FFIEVADRVNKDTTIL----LNTFNELESDVIN 243
Query: 228 ---TMFPELLPIGPLTASNRQ-------GNSAGYFWREDSNCLKWLDQQQPSSVIYAAFG 277
+ P + PIGPL + +Q + W+ED+ CL WL+ ++P SV+Y FG
Sbjct: 244 ALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 278 SLTILDQVQFQEF 290
S T++ Q EF
Sbjct: 304 STTVMTPEQLLEF 316
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 124/311 (39%), Gaps = 48/311 (15%)
Query: 3 SPHVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVESLQGKNYLEEQIR 61
+PHV ++P P GH+IPL+EF++ L HG VTFV +G ++
Sbjct: 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAG----------EGPPSKAQRTV 55
Query: 62 LVSIPDGME----PWEDRNDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNM 117
L S+P + P D D + ++ + N + D F+ G +
Sbjct: 56 LDSLPSSISSVFLPPVDLTDLSSSTR-----IESRISLTVTRSNPELRKVFDSFVEGGRL 110
Query: 118 GWSL----------EVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSHGTPMSMQ 167
+L +VA + +V +F+ ++A ++ +PKL D + ++
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL--DETVSCEFRELTEP 168
Query: 168 MFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAF 227
+ L P + +D F D + L NT+ + N+ +ELE A
Sbjct: 169 LML--PGCVPVAGKD-FLDPAQDRKDDA--YKWLLHNTKRYKEAEGILVNTFFELEPNAI 223
Query: 228 TMF-------PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLT 280
P + P+GPL +Q E+S CLKWLD Q SV+Y +FGS
Sbjct: 224 KALQEPGLDKPPVYPVGPLVNIGKQEAKQ----TEESECLKWLDNQPLGSVLYVSFGSGG 279
Query: 281 ILDQVQFQEFV 291
L Q E
Sbjct: 280 TLTCEQLNELA 290
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 24/284 (8%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVS 64
HV V+ P H PLL + +A +VTF + +L I+ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLP-NIKYYN 73
Query: 65 IPDGM-EPWEDRNDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEV 123
+ DG+ + + + + I F++ M + +I+E + + I C + D + ++
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 124 AKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSHGTP--MSMQMFLIAPNMPEMNSR 181
A++M+ + W++ S+ + + D I + G+ ++ + P PE+ +
Sbjct: 134 AEEMHAKWVPLWTAGPHSL-----LTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKAS 188
Query: 182 DCFWAHIGDLTT------QKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMFPELLP 235
D I D+ K+ +L N A+ + F +E+E + F LL
Sbjct: 189 DLPEGVIKDIDVPFATMLHKMGLELPRANAVAINS----FATIHPLIENELNSKFKLLLN 244
Query: 236 IGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSL 279
+GP + Q + ++ CL+WLDQ + SSV+Y +FGS+
Sbjct: 245 VGPFNLTTPQRKVS-----DEHGCLEWLDQHENSSVVYISFGSV 283
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 135/323 (41%), Gaps = 50/323 (15%)
Query: 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAK---HG----FRVTFVNTDYYHKRVVESLQGKN 54
++PHV V+ P H PLL + LA H F + N +H + +
Sbjct: 6 TNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSM-------H 58
Query: 55 YLEEQIRLVSIPDGM--------EPWEDRNDFGKLIEKFLQVMPRKLEELIEEINSREDE 106
++ I+ I DG+ P ED IE F + P + + +
Sbjct: 59 TMQCNIKSYDISDGVPEGYVFAGRPQED-------IELFTRAAPESFRQGMVMAVAETGR 111
Query: 107 KIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDD-GIIDSHGTPMS 165
+ C +AD + ++ ++A +M V FW++ S++ I ++ + G+ G
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE 171
Query: 166 MQMFLIAPNMPEMNSRDCFWAHI-GDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELE- 223
+ F+ P M ++ RD + G+L + +F +L R + + F NS EL+
Sbjct: 172 LLNFI--PGMSKVRFRDLQEGIVFGNLNS--LFSRMLHRMGQVLPKATAVFINSFEELDD 227
Query: 224 ---SEAFTMFPELLPIGP---LTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFG 277
++ + L IGP +T N+ G CL+WL +++P+SV+Y +FG
Sbjct: 228 SLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTG--------CLQWLKERKPTSVVYISFG 279
Query: 278 SLTILDQVQFQEFVDARFWLRLP 300
++T + +A R+P
Sbjct: 280 TVTTPPPAEVVALSEALEASRVP 302
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 27/290 (9%)
Query: 6 VLVMPGPAQGHVIPLLEFSQCLAKHG-------FRVTFVN---TDYYHKRVVESLQGKNY 55
++ +P P GH+ LEF++ L H F + F D Y K V+ S
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS------ 65
Query: 56 LEEQIRLVSIPDGMEPWEDRNDFGKL-IEKFLQVMPRKLEELIEEINSREDEKIDCFIAD 114
+ QI+L+ +P+ P ++ + I FL+ + ++ I+ I S K+ + D
Sbjct: 66 -QPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN---KVVGLVLD 121
Query: 115 GNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIP-KLIDDGIIDSHGTPMSMQMFLIAP 173
++V + + +F +S+ ++L+ + + I++ DS + + I+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 174 NMPEMNSRD-CFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFH-FCNSTYELESEAFTMFP 231
+P D CF G + K+ R+T+ + F S+ + + P
Sbjct: 182 QVPSNVLPDACFNKDGGYIAYYKLAERF--RDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239
Query: 232 ELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTI 281
+ +GPL Q N + D LKWLD+Q SV++ FGS+ +
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGV 288
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 27/290 (9%)
Query: 6 VLVMPGPAQGHVIPLLEFSQCLAKHG-------FRVTFVN---TDYYHKRVVESLQGKNY 55
++ +P P GH+ LEF++ L H F + F D Y K V+ S
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS------ 65
Query: 56 LEEQIRLVSIPDGMEPWEDRNDFGKL-IEKFLQVMPRKLEELIEEINSREDEKIDCFIAD 114
+ QI+L+ +P+ P ++ + I FL+ + ++ I+ I S K+ + D
Sbjct: 66 -QPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN---KVVGLVLD 121
Query: 115 GNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIP-KLIDDGIIDSHGTPMSMQMFLIAP 173
++V + + +F +S+ ++L+ + + I++ DS + + I+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 174 NMPEMNSRD-CFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFH-FCNSTYELESEAFTMFP 231
+P D CF G + K+ R+T+ + F S+ + + P
Sbjct: 182 QVPSNVLPDACFNKDGGYIAYYKLAERF--RDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239
Query: 232 ELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTI 281
+ +GPL Q N + D LKWLD+Q SV++ FGS+ +
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGV 288
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 42 YHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEELIEE 99
Y +RV+ +L K + E+ + P ME WE + F +L+E ++ + +E I E
Sbjct: 364 YSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINE 421
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46
H+L GHV P L LA+ G R+T+V T + V
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,661,716
Number of Sequences: 62578
Number of extensions: 391981
Number of successful extensions: 809
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 12
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)