Query 044384
Match_columns 322
No_of_seqs 222 out of 1318
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.6E-47 3.5E-52 356.4 28.4 284 3-302 7-304 (451)
2 PLN02152 indole-3-acetate beta 100.0 2.4E-47 5.1E-52 354.5 28.4 281 1-301 1-300 (455)
3 PLN02562 UDP-glycosyltransfera 100.0 1.2E-46 2.6E-51 351.3 30.0 291 3-301 6-313 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 1.5E-46 3.2E-51 348.6 28.3 278 3-301 5-301 (449)
5 PLN02555 limonoid glucosyltran 100.0 4.7E-46 1E-50 347.9 29.5 292 3-301 7-316 (480)
6 PLN02992 coniferyl-alcohol glu 100.0 2.6E-46 5.6E-51 348.9 26.6 276 2-301 4-302 (481)
7 PLN03004 UDP-glycosyltransfera 100.0 4.4E-46 9.5E-51 345.6 26.8 289 1-301 1-309 (451)
8 PLN03015 UDP-glucosyl transfer 100.0 6.7E-46 1.4E-50 344.4 27.7 282 1-301 1-306 (470)
9 PLN02207 UDP-glycosyltransfera 100.0 1.8E-45 3.9E-50 342.6 28.1 290 1-301 1-314 (468)
10 PLN00164 glucosyltransferase; 100.0 1.3E-45 2.9E-50 346.7 27.3 286 1-302 1-312 (480)
11 PLN02670 transferase, transfer 100.0 1.4E-45 3E-50 343.8 26.4 285 3-302 6-318 (472)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 1E-44 2.2E-49 339.8 26.5 287 2-302 8-323 (477)
13 PLN02534 UDP-glycosyltransfera 100.0 1.2E-44 2.6E-49 339.0 26.9 285 3-301 8-322 (491)
14 PLN02764 glycosyltransferase f 100.0 2.9E-44 6.4E-49 332.4 27.2 268 3-302 5-297 (453)
15 PLN02554 UDP-glycosyltransfera 100.0 2.5E-43 5.4E-48 332.4 27.1 286 3-301 2-313 (481)
16 PLN02167 UDP-glycosyltransfera 100.0 7.1E-43 1.5E-47 328.8 26.6 291 1-301 1-319 (475)
17 PLN02210 UDP-glucosyl transfer 100.0 1.4E-42 3.1E-47 324.3 27.7 281 3-301 8-308 (456)
18 PLN00414 glycosyltransferase f 100.0 5.6E-43 1.2E-47 325.5 24.9 263 3-303 4-293 (446)
19 PLN02208 glycosyltransferase f 100.0 1.5E-42 3.2E-47 322.4 25.7 263 1-301 1-290 (442)
20 PLN02448 UDP-glycosyltransfera 100.0 5.2E-41 1.1E-45 315.4 28.3 286 3-301 10-313 (459)
21 PLN03007 UDP-glucosyltransfera 100.0 2E-40 4.3E-45 313.0 27.4 283 3-302 5-325 (482)
22 PHA03392 egt ecdysteroid UDP-g 99.9 4.7E-26 1E-30 215.9 16.8 263 5-302 22-339 (507)
23 PF00201 UDPGT: UDP-glucoronos 99.9 3.8E-28 8.2E-33 232.3 -6.4 261 5-301 2-316 (500)
24 KOG1192 UDP-glucuronosyl and U 99.9 1.3E-24 2.7E-29 207.9 12.7 287 3-303 5-322 (496)
25 TIGR01426 MGT glycosyltransfer 99.8 5.8E-17 1.3E-21 150.5 21.8 236 10-294 2-250 (392)
26 cd03784 GT1_Gtf_like This fami 99.7 2.8E-17 6.1E-22 153.1 15.0 123 4-138 1-135 (401)
27 PF03033 Glyco_transf_28: Glyc 99.0 6.1E-10 1.3E-14 87.9 7.1 123 6-138 1-131 (139)
28 COG1819 Glycosyl transferases, 99.0 1.6E-09 3.5E-14 100.6 10.8 117 3-135 1-123 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.3 9.9E-06 2.2E-10 73.0 12.7 119 4-138 1-124 (318)
30 TIGR00661 MJ1255 conserved hyp 98.1 3.7E-05 8E-10 69.5 11.8 117 6-136 2-121 (321)
31 PRK12446 undecaprenyldiphospho 97.7 0.00051 1.1E-08 62.9 12.2 118 5-139 3-125 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.2 0.0063 1.4E-07 55.6 12.1 119 5-139 2-125 (357)
33 PRK00726 murG undecaprenyldiph 97.1 0.0079 1.7E-07 55.0 12.5 115 4-134 2-120 (357)
34 cd03785 GT1_MurG MurG is an N- 97.1 0.0089 1.9E-07 54.3 11.9 113 6-134 2-118 (350)
35 TIGR01133 murG undecaprenyldip 97.0 0.014 3.1E-07 53.0 12.5 114 5-134 2-119 (348)
36 cd03818 GT1_ExpC_like This fam 96.4 0.057 1.2E-06 50.2 12.6 102 20-135 13-116 (396)
37 cd03816 GT1_ALG1_like This fam 96.4 0.09 2E-06 49.3 13.4 39 3-41 3-41 (415)
38 TIGR03590 PseG pseudaminic aci 96.1 0.088 1.9E-06 46.6 11.4 97 12-135 12-110 (279)
39 cd03800 GT1_Sucrose_synthase T 95.9 0.046 1E-06 50.3 9.2 108 14-134 21-130 (398)
40 COG4671 Predicted glycosyl tra 95.9 0.032 7E-07 49.9 7.2 57 3-67 9-69 (400)
41 PF13477 Glyco_trans_4_2: Glyc 95.8 0.2 4.3E-06 38.8 11.1 98 6-132 2-103 (139)
42 PF13579 Glyco_trans_4_4: Glyc 95.6 0.013 2.8E-07 46.2 3.7 97 18-135 5-103 (160)
43 cd03823 GT1_ExpE7_like This fa 95.4 0.18 3.9E-06 45.2 10.8 29 14-42 15-43 (359)
44 TIGR00215 lpxB lipid-A-disacch 95.1 0.17 3.7E-06 47.0 9.9 36 4-40 6-41 (385)
45 PLN02871 UDP-sulfoquinovose:DA 95.0 0.12 2.5E-06 49.3 8.7 40 2-41 57-101 (465)
46 PRK10307 putative glycosyl tra 94.8 0.37 8E-06 45.0 11.4 22 20-41 21-42 (412)
47 PF04007 DUF354: Protein of un 94.8 0.53 1.1E-05 42.7 11.8 104 15-140 11-115 (335)
48 cd04962 GT1_like_5 This family 94.6 0.39 8.5E-06 43.7 10.9 37 5-41 2-39 (371)
49 cd03794 GT1_wbuB_like This fam 94.3 0.51 1.1E-05 42.5 10.8 29 14-42 14-42 (394)
50 cd03808 GT1_cap1E_like This fa 94.1 0.62 1.3E-05 41.4 10.8 38 6-43 2-39 (359)
51 PRK13609 diacylglycerol glucos 94.1 0.19 4.1E-06 46.4 7.6 38 3-40 4-42 (380)
52 PF12000 Glyco_trans_4_3: Gkyc 94.0 0.66 1.4E-05 37.7 9.4 94 29-135 1-95 (171)
53 COG3980 spsG Spore coat polysa 93.8 0.45 9.8E-06 41.5 8.4 99 5-142 2-107 (318)
54 cd03814 GT1_like_2 This family 93.5 0.31 6.8E-06 43.7 7.7 28 14-41 14-41 (364)
55 cd03817 GT1_UGDG_like This fam 93.2 0.54 1.2E-05 42.2 8.8 32 10-41 10-41 (374)
56 PRK00025 lpxB lipid-A-disaccha 93.1 0.7 1.5E-05 42.5 9.5 35 5-40 3-37 (380)
57 cd03805 GT1_ALG2_like This fam 91.9 3.4 7.3E-05 37.9 12.4 36 5-40 2-39 (392)
58 TIGR02468 sucrsPsyn_pln sucros 91.9 2.3 4.9E-05 44.3 11.9 121 14-134 195-339 (1050)
59 cd03802 GT1_AviGT4_like This f 91.8 1.7 3.6E-05 38.8 10.1 29 13-41 18-46 (335)
60 PF13439 Glyco_transf_4: Glyco 91.8 2.3 5E-05 33.6 10.0 29 13-41 11-39 (177)
61 cd03819 GT1_WavL_like This fam 91.8 2.6 5.6E-05 37.9 11.3 98 14-136 10-109 (355)
62 PLN00142 sucrose synthase 91.6 1.6 3.6E-05 44.2 10.4 106 22-135 319-438 (815)
63 TIGR03449 mycothiol_MshA UDP-N 91.5 1.5 3.1E-05 40.7 9.6 111 13-135 19-131 (405)
64 TIGR02470 sucr_synth sucrose s 91.2 2.9 6.3E-05 42.3 11.7 112 14-134 279-414 (784)
65 cd03796 GT1_PIG-A_like This fa 91.1 2.5 5.4E-05 39.2 10.7 102 14-134 14-119 (398)
66 TIGR02472 sucr_P_syn_N sucrose 90.6 2.2 4.9E-05 40.2 9.9 112 15-134 27-143 (439)
67 cd03820 GT1_amsD_like This fam 90.3 2.1 4.6E-05 37.7 9.2 30 13-42 12-41 (348)
68 cd04955 GT1_like_6 This family 90.0 4 8.6E-05 36.7 10.8 31 12-42 13-43 (363)
69 cd03801 GT1_YqgM_like This fam 89.7 2.8 6.2E-05 37.1 9.6 29 14-42 14-42 (374)
70 PRK02261 methylaspartate mutas 89.6 8.4 0.00018 30.1 13.2 46 1-46 1-46 (137)
71 cd01635 Glycosyltransferase_GT 88.6 4 8.6E-05 33.6 9.2 26 13-38 12-37 (229)
72 cd03795 GT1_like_4 This family 88.6 6.3 0.00014 35.3 11.0 30 13-42 13-42 (357)
73 PLN02275 transferase, transfer 88.2 18 0.0004 33.1 14.0 58 4-67 5-63 (371)
74 cd03812 GT1_CapH_like This fam 86.3 7.5 0.00016 34.9 10.2 31 12-42 10-40 (358)
75 cd03798 GT1_wlbH_like This fam 83.7 8.8 0.00019 34.0 9.4 31 13-43 13-43 (377)
76 PRK05749 3-deoxy-D-manno-octul 83.4 7.5 0.00016 36.4 8.9 98 6-135 52-154 (425)
77 COG1817 Uncharacterized protei 81.8 27 0.00059 31.2 10.9 106 14-141 10-117 (346)
78 PRK05986 cob(I)alamin adenolsy 81.6 29 0.00063 28.8 11.6 39 2-40 21-59 (191)
79 cd03807 GT1_WbnK_like This fam 78.3 36 0.00079 29.9 11.4 31 11-41 9-39 (365)
80 cd03825 GT1_wcfI_like This fam 78.0 3.5 7.6E-05 37.1 4.6 38 5-42 2-41 (365)
81 PRK13608 diacylglycerol glucos 76.9 34 0.00074 31.7 10.9 36 3-38 5-44 (391)
82 COG1066 Sms Predicted ATP-depe 76.5 15 0.00032 34.2 7.9 40 6-46 96-135 (456)
83 TIGR02655 circ_KaiC circadian 76.0 31 0.00067 33.1 10.6 43 6-48 266-308 (484)
84 PLN02846 digalactosyldiacylgly 75.1 4.8 0.0001 38.3 4.8 38 3-40 4-46 (462)
85 cd04951 GT1_WbdM_like This fam 75.1 3.5 7.6E-05 37.0 3.8 29 13-41 11-39 (360)
86 cd02067 B12-binding B12 bindin 75.1 32 0.0007 25.7 10.8 36 5-40 1-36 (119)
87 PRK00654 glgA glycogen synthas 75.0 4.7 0.0001 38.4 4.8 27 14-40 17-43 (466)
88 cd01425 RPS2 Ribosomal protein 74.5 13 0.00028 30.9 6.6 34 106-139 126-161 (193)
89 PF08660 Alg14: Oligosaccharid 73.8 30 0.00065 28.1 8.5 32 10-41 4-37 (170)
90 cd00561 CobA_CobO_BtuR ATP:cor 73.5 46 0.00099 26.7 11.5 35 5-39 4-38 (159)
91 cd03792 GT1_Trehalose_phosphor 73.4 17 0.00037 33.2 8.0 30 12-41 10-39 (372)
92 COG0052 RpsB Ribosomal protein 73.0 23 0.00051 30.4 7.8 33 107-139 156-190 (252)
93 PRK01175 phosphoribosylformylg 72.4 36 0.00077 29.8 9.2 37 1-40 1-37 (261)
94 COG1484 DnaC DNA replication p 72.3 8.4 0.00018 33.5 5.3 45 4-48 106-150 (254)
95 TIGR01007 eps_fam capsular exo 72.0 55 0.0012 27.0 12.3 40 3-42 16-57 (204)
96 PLN02605 monogalactosyldiacylg 71.9 23 0.00049 32.7 8.4 33 7-39 3-38 (382)
97 cd03821 GT1_Bme6_like This fam 71.7 6.1 0.00013 35.2 4.5 30 13-42 13-42 (375)
98 TIGR00715 precor6x_red precorr 71.2 37 0.00079 29.6 8.9 23 20-42 12-34 (256)
99 cd01121 Sms Sms (bacterial rad 71.1 66 0.0014 29.7 11.1 41 6-46 85-125 (372)
100 TIGR00347 bioD dethiobiotin sy 71.1 44 0.00095 26.5 9.0 27 11-37 6-32 (166)
101 TIGR00236 wecB UDP-N-acetylglu 70.7 42 0.00091 30.6 9.8 111 5-134 2-116 (365)
102 TIGR03087 stp1 sugar transfera 70.5 16 0.00034 33.8 7.1 32 9-41 8-40 (397)
103 COG2894 MinD Septum formation 70.3 50 0.0011 28.2 9.0 36 5-40 3-40 (272)
104 cd03806 GT1_ALG11_like This fa 70.1 53 0.0011 30.8 10.5 29 15-43 15-45 (419)
105 PRK10422 lipopolysaccharide co 69.4 76 0.0017 28.8 11.2 43 4-46 6-50 (352)
106 TIGR02193 heptsyl_trn_I lipopo 69.1 26 0.00057 31.3 8.0 42 5-46 1-44 (319)
107 cd03786 GT1_UDP-GlcNAc_2-Epime 68.7 15 0.00033 33.2 6.5 30 11-40 6-36 (363)
108 PRK11823 DNA repair protein Ra 68.5 51 0.0011 31.3 10.0 41 6-46 83-123 (446)
109 cd03811 GT1_WabH_like This fam 68.5 8.3 0.00018 33.9 4.6 31 12-42 10-40 (353)
110 cd01424 MGS_CPS_II Methylglyox 67.0 48 0.001 24.4 8.1 83 15-132 10-99 (110)
111 cd02070 corrinoid_protein_B12- 66.9 73 0.0016 26.5 11.6 44 3-46 82-125 (201)
112 COG2910 Putative NADH-flavin r 66.5 8.1 0.00018 31.8 3.6 33 5-41 2-34 (211)
113 COG2874 FlaH Predicted ATPases 66.3 61 0.0013 27.5 8.7 33 12-44 37-69 (235)
114 PF02441 Flavoprotein: Flavopr 65.9 14 0.0003 28.3 4.8 41 5-46 2-42 (129)
115 TIGR03600 phage_DnaB phage rep 65.9 43 0.00093 31.4 9.0 41 6-46 197-238 (421)
116 PF02951 GSH-S_N: Prokaryotic 65.8 14 0.00031 28.0 4.7 37 5-41 2-41 (119)
117 TIGR02095 glgA glycogen/starch 65.5 11 0.00023 36.0 4.9 37 5-41 2-44 (473)
118 COG0496 SurE Predicted acid ph 65.3 40 0.00088 29.2 7.8 28 16-44 12-39 (252)
119 PRK13934 stationary phase surv 64.8 62 0.0013 28.4 9.0 26 18-44 14-39 (266)
120 PRK13935 stationary phase surv 64.2 57 0.0012 28.4 8.6 25 19-44 15-39 (253)
121 TIGR00087 surE 5'/3'-nucleotid 63.5 63 0.0014 27.9 8.8 25 19-44 15-39 (244)
122 PRK13932 stationary phase surv 63.2 48 0.001 28.9 8.0 25 18-43 19-43 (257)
123 smart00851 MGS MGS-like domain 62.8 51 0.0011 23.2 8.2 25 20-46 2-26 (90)
124 PRK10964 ADP-heptose:LPS hepto 62.7 57 0.0012 29.2 8.9 40 5-44 2-43 (322)
125 PRK14099 glycogen synthase; Pr 62.5 14 0.0003 35.5 5.1 41 1-41 1-47 (485)
126 cd02069 methionine_synthase_B1 62.3 75 0.0016 26.8 8.9 44 3-46 88-131 (213)
127 PF08323 Glyco_transf_5: Starc 61.9 8.9 0.00019 33.1 3.3 27 15-41 17-43 (245)
128 PRK01077 cobyrinic acid a,c-di 61.9 1.4E+02 0.003 28.4 11.7 40 1-40 1-41 (451)
129 PRK13931 stationary phase surv 61.7 63 0.0014 28.3 8.5 25 20-44 16-43 (261)
130 PF12146 Hydrolase_4: Putative 61.6 17 0.00038 25.2 4.2 33 5-37 17-49 (79)
131 PRK08506 replicative DNA helic 61.6 49 0.0011 31.7 8.5 41 6-46 195-235 (472)
132 PF04244 DPRP: Deoxyribodipyri 61.0 8.6 0.00019 32.8 3.0 26 16-41 47-72 (224)
133 PRK10916 ADP-heptose:LPS hepto 60.5 1.3E+02 0.0029 27.2 11.0 42 5-46 2-45 (348)
134 PRK12342 hypothetical protein; 60.1 1.2E+02 0.0025 26.5 10.3 31 107-137 109-145 (254)
135 cd03791 GT1_Glycogen_synthase_ 59.3 10 0.00022 36.1 3.5 28 14-41 16-43 (476)
136 TIGR02201 heptsyl_trn_III lipo 59.2 1.2E+02 0.0027 27.3 10.5 106 5-134 1-110 (344)
137 COG1618 Predicted nucleotide k 58.9 60 0.0013 26.3 7.1 38 4-41 6-43 (179)
138 PF02310 B12-binding: B12 bind 58.5 25 0.00055 26.1 5.0 36 5-40 2-37 (121)
139 cd05844 GT1_like_7 Glycosyltra 58.1 82 0.0018 28.2 9.2 28 106-133 81-110 (367)
140 PRK08760 replicative DNA helic 57.8 49 0.0011 31.7 7.8 41 6-46 232-273 (476)
141 PF04127 DFP: DNA / pantothena 56.9 12 0.00026 30.8 3.2 22 20-41 32-53 (185)
142 PRK07952 DNA replication prote 56.8 53 0.0012 28.4 7.2 36 5-40 101-136 (244)
143 TIGR03088 stp2 sugar transfera 56.4 1.5E+02 0.0033 26.7 11.3 99 8-132 7-107 (374)
144 TIGR00416 sms DNA repair prote 56.2 1.1E+02 0.0024 29.2 9.9 41 6-46 97-137 (454)
145 COG1435 Tdk Thymidine kinase [ 55.8 1E+02 0.0022 25.7 8.2 39 4-42 4-43 (201)
146 cd01423 MGS_CPS_I_III Methylgl 55.3 65 0.0014 24.0 6.8 86 16-132 11-105 (116)
147 PRK08305 spoVFB dipicolinate s 55.1 21 0.00046 29.7 4.3 40 3-43 5-45 (196)
148 PF09314 DUF1972: Domain of un 54.6 21 0.00045 29.5 4.1 55 5-66 3-62 (185)
149 PRK06321 replicative DNA helic 54.3 86 0.0019 30.1 8.8 41 6-46 229-270 (472)
150 PRK10867 signal recognition pa 53.9 73 0.0016 30.1 8.1 39 6-44 103-142 (433)
151 TIGR01425 SRP54_euk signal rec 53.5 91 0.002 29.5 8.6 38 6-43 103-140 (429)
152 TIGR03568 NeuC_NnaA UDP-N-acet 53.2 1.8E+02 0.004 26.6 11.0 108 11-135 7-124 (365)
153 PRK11519 tyrosine kinase; Prov 53.0 2.7E+02 0.0057 28.4 14.0 38 4-41 526-565 (719)
154 COG1519 KdtA 3-deoxy-D-manno-o 53.0 2E+02 0.0044 27.0 10.9 99 6-136 51-154 (419)
155 COG2099 CobK Precorrin-6x redu 52.8 1E+02 0.0022 26.7 8.1 81 20-136 14-101 (257)
156 TIGR02195 heptsyl_trn_II lipop 52.0 1.7E+02 0.0036 26.2 10.1 42 5-46 1-44 (334)
157 PRK12311 rpsB 30S ribosomal pr 51.9 61 0.0013 29.3 7.0 34 107-140 152-187 (326)
158 PF07894 DUF1669: Protein of u 51.3 17 0.00037 32.0 3.2 45 92-137 134-183 (284)
159 PF02374 ArsA_ATPase: Anion-tr 49.8 27 0.00058 31.3 4.4 40 5-44 2-42 (305)
160 PRK06849 hypothetical protein; 48.5 1.9E+02 0.0041 26.7 10.1 35 3-41 4-38 (389)
161 PRK11889 flhF flagellar biosyn 47.9 1.5E+02 0.0032 28.0 8.8 39 5-43 243-281 (436)
162 PRK09841 cryptic autophosphory 47.7 3E+02 0.0066 28.0 12.0 38 4-41 531-570 (726)
163 PF01975 SurE: Survival protei 47.6 18 0.0004 30.1 2.8 27 18-44 14-40 (196)
164 TIGR02370 pyl_corrinoid methyl 47.5 54 0.0012 27.2 5.7 46 3-48 84-129 (197)
165 COG2185 Sbm Methylmalonyl-CoA 47.4 38 0.00082 26.6 4.3 40 1-40 10-49 (143)
166 TIGR01005 eps_transp_fam exopo 47.3 2.8E+02 0.0061 28.3 11.8 39 4-42 546-586 (754)
167 PF00070 Pyr_redox: Pyridine n 46.2 31 0.00067 23.6 3.5 23 19-41 10-32 (80)
168 PF06925 MGDG_synth: Monogalac 46.0 59 0.0013 26.0 5.6 25 16-40 1-28 (169)
169 COG1797 CobB Cobyrinic acid a, 45.7 1.1E+02 0.0024 28.8 7.7 28 9-36 7-34 (451)
170 TIGR00708 cobA cob(I)alamin ad 45.3 1.7E+02 0.0036 23.9 10.9 33 5-37 7-39 (173)
171 cd03789 GT1_LPS_heptosyltransf 44.7 2.1E+02 0.0045 24.8 10.5 42 5-46 1-44 (279)
172 PRK07773 replicative DNA helic 44.3 1.3E+02 0.0028 31.5 8.9 41 6-46 220-261 (886)
173 PRK13886 conjugal transfer pro 44.3 46 0.001 28.7 4.8 44 1-44 1-44 (241)
174 PRK05636 replicative DNA helic 43.8 66 0.0014 31.1 6.3 41 6-46 268-309 (505)
175 PRK06719 precorrin-2 dehydroge 42.9 54 0.0012 26.1 4.8 32 4-40 14-45 (157)
176 cd03822 GT1_ecORF704_like This 42.9 36 0.00078 30.2 4.3 29 13-41 12-40 (366)
177 PRK11064 wecC UDP-N-acetyl-D-m 42.2 47 0.001 31.2 5.0 36 1-41 1-36 (415)
178 TIGR03880 KaiC_arch_3 KaiC dom 42.2 1.3E+02 0.0029 25.1 7.5 43 6-48 19-61 (224)
179 cd03799 GT1_amsK_like This is 42.1 45 0.00098 29.6 4.8 26 16-41 13-38 (355)
180 PRK08057 cobalt-precorrin-6x r 41.8 1.5E+02 0.0032 25.7 7.6 39 91-136 55-100 (248)
181 PF13450 NAD_binding_8: NAD(P) 41.7 35 0.00075 22.8 3.0 21 20-40 8-28 (68)
182 COG1703 ArgK Putative periplas 41.7 55 0.0012 29.3 4.9 39 5-43 53-91 (323)
183 COG0381 WecB UDP-N-acetylgluco 40.9 3E+02 0.0066 25.6 10.1 115 1-134 1-122 (383)
184 PRK09620 hypothetical protein; 40.5 29 0.00063 29.7 3.0 20 21-40 33-52 (229)
185 PRK14106 murD UDP-N-acetylmura 39.9 48 0.001 31.3 4.8 33 3-40 5-37 (450)
186 PRK00090 bioD dithiobiotin syn 39.7 2.2E+02 0.0048 23.7 9.7 28 11-38 8-35 (222)
187 PRK09165 replicative DNA helic 39.7 1.6E+02 0.0034 28.5 8.2 41 6-46 220-275 (497)
188 cd02034 CooC The accessory pro 39.1 76 0.0016 23.8 4.8 37 5-41 1-37 (116)
189 PRK07236 hypothetical protein; 38.5 57 0.0012 30.0 4.9 34 1-39 4-37 (386)
190 PF07015 VirC1: VirC1 protein; 38.3 75 0.0016 27.2 5.1 40 6-45 4-44 (231)
191 PRK06732 phosphopantothenate-- 38.2 34 0.00073 29.2 3.1 21 20-40 29-49 (229)
192 PRK08939 primosomal protein Dn 37.7 64 0.0014 28.9 4.9 40 5-44 158-197 (306)
193 PRK07313 phosphopantothenoylcy 37.3 47 0.001 27.2 3.7 40 5-45 3-42 (182)
194 COG0801 FolK 7,8-dihydro-6-hyd 37.3 29 0.00063 27.8 2.3 24 271-294 3-26 (160)
195 KOG4626 O-linked N-acetylgluco 36.8 41 0.00088 33.2 3.6 42 267-308 756-804 (966)
196 PF02572 CobA_CobO_BtuR: ATP:c 36.7 2.3E+02 0.005 23.0 8.8 37 5-41 5-41 (172)
197 PF03403 PAF-AH_p_II: Platelet 36.5 37 0.00079 31.5 3.3 36 5-40 101-136 (379)
198 PRK13234 nifH nitrogenase redu 35.7 77 0.0017 28.1 5.1 41 1-41 1-42 (295)
199 TIGR03492 conserved hypothetic 35.7 3.7E+02 0.0079 25.0 10.7 29 13-41 6-39 (396)
200 TIGR02990 ectoine_eutA ectoine 35.6 2.9E+02 0.0062 23.8 9.4 100 17-134 105-212 (239)
201 PF01695 IstB_IS21: IstB-like 35.4 76 0.0017 25.8 4.7 43 4-46 48-90 (178)
202 TIGR02852 spore_dpaB dipicolin 35.3 57 0.0012 27.0 3.8 38 5-42 2-39 (187)
203 cd01840 SGNH_hydrolase_yrhL_li 35.1 44 0.00095 26.1 3.1 27 268-294 50-76 (150)
204 KOG1014 17 beta-hydroxysteroid 34.5 41 0.00089 30.0 3.0 20 21-40 63-82 (312)
205 PLN02891 IMP cyclohydrolase 34.5 1.1E+02 0.0025 29.5 6.1 39 18-67 33-71 (547)
206 COG0467 RAD55 RecA-superfamily 34.3 96 0.0021 26.8 5.5 44 5-48 25-68 (260)
207 COG2109 BtuR ATP:corrinoid ade 34.3 2.7E+02 0.0059 23.1 9.3 98 5-117 30-132 (198)
208 COG1255 Uncharacterized protei 34.3 44 0.00095 25.2 2.7 21 19-39 24-44 (129)
209 PF01210 NAD_Gly3P_dh_N: NAD-d 33.9 43 0.00094 26.5 2.9 22 20-41 11-32 (157)
210 PF06506 PrpR_N: Propionate ca 33.4 51 0.0011 26.7 3.3 43 90-138 111-153 (176)
211 PF08452 DNAP_B_exo_N: DNA pol 33.4 30 0.00065 17.4 1.1 17 258-274 4-20 (22)
212 TIGR02015 BchY chlorophyllide 33.0 3.8E+02 0.0083 25.2 9.5 31 5-40 287-317 (422)
213 COG0300 DltE Short-chain dehyd 32.8 46 0.001 29.2 3.1 32 6-40 8-39 (265)
214 TIGR03029 EpsG chain length de 32.3 3.3E+02 0.0072 23.5 11.1 37 4-40 103-141 (274)
215 PRK06249 2-dehydropantoate 2-r 32.3 62 0.0013 28.9 4.0 36 1-41 3-38 (313)
216 COG4088 Predicted nucleotide k 32.2 56 0.0012 27.7 3.3 106 6-143 4-115 (261)
217 KOG2585 Uncharacterized conser 32.1 82 0.0018 29.6 4.6 36 2-40 265-302 (453)
218 PF06722 DUF1205: Protein of u 32.0 33 0.0007 25.0 1.7 39 256-294 27-70 (97)
219 PRK05920 aromatic acid decarbo 31.5 71 0.0015 26.8 3.9 41 5-46 5-45 (204)
220 PRK13982 bifunctional SbtC-lik 31.5 45 0.00099 31.9 3.0 20 21-40 286-305 (475)
221 PRK06835 DNA replication prote 31.4 87 0.0019 28.4 4.7 41 4-44 184-224 (329)
222 PLN00016 RNA-binding protein; 31.2 67 0.0015 29.5 4.1 36 5-40 54-89 (378)
223 cd01983 Fer4_NifH The Fer4_Nif 31.1 1.2E+02 0.0027 20.6 4.8 33 6-38 2-34 (99)
224 PF13460 NAD_binding_10: NADH( 31.1 74 0.0016 25.4 4.0 23 20-42 11-33 (183)
225 PRK14569 D-alanyl-alanine synt 31.0 1.2E+02 0.0026 26.9 5.6 38 1-39 1-43 (296)
226 PLN02949 transferase, transfer 30.7 4.8E+02 0.01 24.9 12.3 26 15-40 48-75 (463)
227 COG1090 Predicted nucleoside-d 30.7 53 0.0011 29.0 3.0 24 20-43 11-34 (297)
228 PF03808 Glyco_tran_WecB: Glyc 30.6 2.9E+02 0.0062 22.2 10.7 98 19-141 36-138 (172)
229 TIGR00176 mobB molybdopterin-g 30.4 1E+02 0.0023 24.4 4.6 35 6-40 2-36 (155)
230 cd01421 IMPCH Inosine monophos 30.2 3E+02 0.0066 22.7 7.2 38 18-66 11-48 (187)
231 COG2085 Predicted dinucleotide 30.1 56 0.0012 27.5 3.0 29 13-43 8-36 (211)
232 TIGR02113 coaC_strep phosphopa 30.0 71 0.0015 26.1 3.6 34 11-44 7-40 (177)
233 PRK09739 hypothetical protein; 30.0 1.5E+02 0.0033 24.4 5.7 39 1-39 1-42 (199)
234 PF10657 RC-P840_PscD: Photosy 29.5 82 0.0018 23.8 3.4 40 3-42 46-85 (144)
235 PRK07206 hypothetical protein; 29.4 3.5E+02 0.0076 25.1 8.7 32 5-41 4-35 (416)
236 PTZ00254 40S ribosomal protein 29.4 30 0.00065 29.9 1.3 33 108-140 119-153 (249)
237 PRK03359 putative electron tra 29.2 1E+02 0.0022 26.9 4.6 39 93-137 104-148 (256)
238 PRK05632 phosphate acetyltrans 29.1 6.2E+02 0.013 25.6 12.1 38 1-39 1-39 (684)
239 TIGR01012 Sa_S2_E_A ribosomal 28.9 28 0.00061 29.0 1.1 33 107-139 108-142 (196)
240 cd03115 SRP The signal recogni 28.8 1.3E+02 0.0028 23.9 5.0 38 6-43 3-40 (173)
241 TIGR00355 purH phosphoribosyla 28.4 2.3E+02 0.0049 27.5 7.0 38 18-66 11-48 (511)
242 PRK14098 glycogen synthase; Pr 28.2 63 0.0014 31.1 3.5 38 4-41 6-49 (489)
243 cd01018 ZntC Metal binding pro 28.2 2.2E+02 0.0048 24.7 6.7 44 92-138 205-250 (266)
244 PRK11199 tyrA bifunctional cho 28.1 4.8E+02 0.01 24.0 9.8 32 4-40 99-131 (374)
245 PLN02316 synthase/transferase 28.0 68 0.0015 33.9 3.8 38 4-41 588-631 (1036)
246 TIGR02149 glgA_Coryne glycogen 28.0 4.5E+02 0.0097 23.7 9.7 22 18-40 20-41 (388)
247 COG0299 PurN Folate-dependent 27.9 1.5E+02 0.0033 24.6 5.1 45 93-137 14-59 (200)
248 PF02558 ApbA: Ketopantoate re 27.8 75 0.0016 24.6 3.4 21 21-41 11-31 (151)
249 KOG4667 Predicted esterase [Li 27.7 1E+02 0.0022 26.3 4.1 44 267-310 31-78 (269)
250 PRK05973 replicative DNA helic 27.6 1.5E+02 0.0033 25.4 5.4 43 6-48 67-109 (237)
251 TIGR02114 coaB_strep phosphopa 27.5 61 0.0013 27.6 2.9 20 19-38 27-46 (227)
252 COG0541 Ffh Signal recognition 27.5 3.5E+02 0.0075 25.7 7.8 39 5-43 102-140 (451)
253 TIGR00421 ubiX_pad polyprenyl 27.4 84 0.0018 25.7 3.6 27 20-46 15-41 (181)
254 cd00983 recA RecA is a bacter 27.4 2.6E+02 0.0055 25.4 7.0 38 6-43 58-95 (325)
255 PRK04020 rps2P 30S ribosomal p 27.4 32 0.00069 28.8 1.1 34 107-140 114-149 (204)
256 TIGR00064 ftsY signal recognit 27.2 1.2E+02 0.0026 26.6 4.8 37 6-42 75-111 (272)
257 TIGR02012 tigrfam_recA protein 27.1 2.1E+02 0.0046 25.9 6.4 38 6-43 58-95 (321)
258 PRK15427 colanic acid biosynth 27.1 1.1E+02 0.0023 28.6 4.7 36 6-42 3-40 (406)
259 cd02032 Bchl_like This family 27.1 1.1E+02 0.0025 26.4 4.7 36 6-41 3-38 (267)
260 TIGR02700 flavo_MJ0208 archaeo 27.0 1E+02 0.0022 26.3 4.3 36 9-44 4-42 (234)
261 COG0569 TrkA K+ transport syst 27.0 57 0.0012 27.7 2.6 22 20-41 12-33 (225)
262 PRK04148 hypothetical protein; 26.9 67 0.0015 24.9 2.8 20 21-40 29-48 (134)
263 COG0003 ArsA Predicted ATPase 26.8 1.3E+02 0.0028 27.3 5.0 40 4-43 2-42 (322)
264 COG0162 TyrS Tyrosyl-tRNA synt 26.8 73 0.0016 29.8 3.4 34 6-40 37-73 (401)
265 TIGR01990 bPGM beta-phosphoglu 26.8 3.2E+02 0.007 21.6 8.4 23 20-42 92-114 (185)
266 TIGR02699 archaeo_AfpA archaeo 26.7 1.1E+02 0.0023 25.0 4.1 32 13-44 8-41 (174)
267 TIGR00745 apbA_panE 2-dehydrop 26.5 61 0.0013 28.4 2.9 19 22-40 5-23 (293)
268 COG2210 Peroxiredoxin family p 26.5 1.4E+02 0.0031 23.2 4.4 40 5-44 4-44 (137)
269 COG4081 Uncharacterized protei 26.5 1.6E+02 0.0035 22.7 4.6 36 5-40 5-41 (148)
270 cd01124 KaiC KaiC is a circadi 26.4 1.8E+02 0.004 23.2 5.6 41 6-46 2-42 (187)
271 PRK14092 2-amino-4-hydroxy-6-h 26.4 64 0.0014 26.0 2.6 25 264-288 2-26 (163)
272 cd01075 NAD_bind_Leu_Phe_Val_D 26.4 1.7E+02 0.0036 24.3 5.3 30 4-38 29-58 (200)
273 PF03720 UDPG_MGDP_dh_C: UDP-g 26.3 87 0.0019 22.9 3.3 25 18-42 17-41 (106)
274 PRK06179 short chain dehydroge 26.3 1.4E+02 0.003 25.6 5.1 37 1-40 1-37 (270)
275 cd03466 Nitrogenase_NifN_2 Nit 26.2 5.5E+02 0.012 24.1 10.5 33 93-134 364-396 (429)
276 cd02065 B12-binding_like B12 b 26.2 1.8E+02 0.0039 21.4 5.2 38 6-43 2-39 (125)
277 KOG2941 Beta-1,4-mannosyltrans 26.1 5.3E+02 0.011 23.9 11.0 59 3-67 12-70 (444)
278 PRK06718 precorrin-2 dehydroge 26.1 1.4E+02 0.003 24.8 4.8 32 4-40 11-42 (202)
279 cd02040 NifH NifH gene encodes 26.0 1.2E+02 0.0025 26.2 4.5 38 5-42 3-40 (270)
280 TIGR01281 DPOR_bchL light-inde 25.9 1.3E+02 0.0028 26.1 4.8 35 6-40 3-37 (268)
281 cd01981 Pchlide_reductase_B Pc 25.7 1.1E+02 0.0025 28.7 4.7 27 106-135 369-395 (430)
282 PF12695 Abhydrolase_5: Alpha/ 25.7 1.5E+02 0.0032 22.2 4.7 33 7-39 2-34 (145)
283 PF03205 MobB: Molybdopterin g 25.7 1.5E+02 0.0032 23.0 4.6 35 5-39 2-36 (140)
284 PRK06029 3-octaprenyl-4-hydrox 25.6 1.2E+02 0.0027 24.9 4.3 41 5-46 3-44 (185)
285 PRK12377 putative replication 25.6 1.4E+02 0.003 25.9 4.8 38 5-42 103-140 (248)
286 TIGR02157 PA_CoA_Oxy2 phenylac 25.5 41 0.00088 24.0 1.2 39 270-308 13-60 (90)
287 PRK13781 paaB phenylacetate-Co 25.5 44 0.00096 24.1 1.4 48 259-308 9-65 (95)
288 PTZ00445 p36-lilke protein; Pr 25.4 87 0.0019 26.5 3.3 28 15-42 74-102 (219)
289 PF03853 YjeF_N: YjeF-related 25.2 85 0.0018 25.3 3.2 33 4-39 26-60 (169)
290 TIGR02237 recomb_radB DNA repa 25.1 3.8E+02 0.0083 21.9 10.1 36 6-41 15-50 (209)
291 PRK01372 ddl D-alanine--D-alan 25.0 1.5E+02 0.0033 26.1 5.2 41 1-41 2-46 (304)
292 cd02071 MM_CoA_mut_B12_BD meth 24.9 3E+02 0.0065 20.6 12.9 40 5-44 1-40 (122)
293 PRK06841 short chain dehydroge 24.9 4.2E+02 0.009 22.2 8.0 21 20-40 28-48 (255)
294 KOG1838 Alpha/beta hydrolase [ 24.7 1.7E+02 0.0037 27.4 5.4 38 4-41 126-164 (409)
295 COG1763 MobB Molybdopterin-gua 24.5 1.6E+02 0.0035 23.7 4.6 36 6-41 5-40 (161)
296 PTZ00318 NADH dehydrogenase-li 24.4 1.1E+02 0.0023 28.7 4.3 36 1-41 8-43 (424)
297 COG1233 Phytoene dehydrogenase 24.3 1.3E+02 0.0028 28.9 4.8 33 1-38 1-33 (487)
298 PRK09361 radB DNA repair and r 24.2 1.7E+02 0.0036 24.5 5.1 35 6-40 26-60 (225)
299 PRK06128 oxidoreductase; Provi 24.2 4.3E+02 0.0093 23.1 8.0 20 20-39 68-87 (300)
300 PRK04940 hypothetical protein; 24.2 2.1E+02 0.0045 23.5 5.3 33 108-140 61-94 (180)
301 cd00550 ArsA_ATPase Oxyanion-t 24.1 1.2E+02 0.0026 26.2 4.2 42 6-48 2-44 (254)
302 PF09140 MipZ: ATPase MipZ; I 24.1 1.2E+02 0.0027 26.3 4.1 37 5-41 1-39 (261)
303 PRK13185 chlL protochlorophyll 23.7 1.5E+02 0.0033 25.6 4.9 40 1-41 1-40 (270)
304 PRK06522 2-dehydropantoate 2-r 23.7 1.3E+02 0.0029 26.3 4.6 31 5-40 2-32 (304)
305 COG3914 Spy Predicted O-linked 23.5 45 0.00097 32.5 1.4 35 267-301 427-468 (620)
306 CHL00072 chlL photochlorophyll 23.4 1.6E+02 0.0035 26.0 5.0 37 6-42 3-39 (290)
307 COG3046 Uncharacterized protei 23.2 95 0.0021 29.0 3.4 26 16-41 51-76 (505)
308 cd01120 RecA-like_NTPases RecA 23.0 2.2E+02 0.0048 21.7 5.3 41 5-45 1-41 (165)
309 PLN02240 UDP-glucose 4-epimera 22.9 1.6E+02 0.0035 26.4 5.1 34 2-39 4-37 (352)
310 PF01380 SIS: SIS domain SIS d 22.5 1.8E+02 0.0039 21.5 4.6 32 12-43 61-92 (131)
311 COG4126 Hydantoin racemase [Am 22.3 2.4E+02 0.0053 24.0 5.3 35 106-140 68-103 (230)
312 KOG3062 RNA polymerase II elon 22.3 1.8E+02 0.004 25.0 4.6 29 5-33 3-31 (281)
313 PRK10037 cell division protein 22.3 1.7E+02 0.0036 25.1 4.8 38 5-42 3-41 (250)
314 PRK05579 bifunctional phosphop 22.0 1.5E+02 0.0033 27.7 4.6 44 2-46 5-48 (399)
315 PRK00771 signal recognition pa 22.0 1.7E+02 0.0037 27.8 5.0 39 5-43 97-135 (437)
316 PRK06222 ferredoxin-NADP(+) re 21.9 2.2E+02 0.0047 25.0 5.5 38 5-44 100-137 (281)
317 PF00185 OTCace: Aspartate/orn 21.9 2.4E+02 0.0052 22.4 5.2 35 4-41 3-37 (158)
318 TIGR00853 pts-lac PTS system, 21.8 2.5E+02 0.0055 20.1 4.9 40 1-40 1-40 (95)
319 PRK13604 luxD acyl transferase 21.7 2.1E+02 0.0046 25.7 5.3 33 5-37 38-70 (307)
320 COG1348 NifH Nitrogenase subun 21.6 2E+02 0.0043 24.9 4.7 40 5-44 3-42 (278)
321 PF04413 Glycos_transf_N: 3-De 21.5 4.5E+02 0.0098 21.4 8.2 99 6-136 23-126 (186)
322 PF07355 GRDB: Glycine/sarcosi 21.5 2E+02 0.0042 26.3 5.0 30 106-135 79-118 (349)
323 cd00861 ProRS_anticodon_short 21.5 1.9E+02 0.0042 20.0 4.3 34 5-38 3-38 (94)
324 PRK06731 flhF flagellar biosyn 21.4 5.6E+02 0.012 22.5 9.7 39 4-42 76-114 (270)
325 PRK02645 ppnK inorganic polyph 21.4 1.9E+02 0.004 26.0 4.9 39 1-39 1-40 (305)
326 TIGR00640 acid_CoA_mut_C methy 21.4 1.5E+02 0.0032 22.9 3.8 37 3-39 53-90 (132)
327 cd03412 CbiK_N Anaerobic cobal 21.4 76 0.0017 24.2 2.2 25 270-294 2-26 (127)
328 PRK06180 short chain dehydroge 21.3 2.1E+02 0.0045 24.7 5.3 23 18-40 15-37 (277)
329 PRK08181 transposase; Validate 21.3 1.9E+02 0.004 25.4 4.8 36 5-40 108-143 (269)
330 TIGR01278 DPOR_BchB light-inde 21.3 1.6E+02 0.0035 28.5 4.9 27 106-135 363-389 (511)
331 TIGR02622 CDP_4_6_dhtase CDP-g 21.3 1.6E+02 0.0036 26.5 4.7 32 4-39 5-36 (349)
332 PF01738 DLH: Dienelactone hyd 21.3 1.9E+02 0.0042 23.9 4.9 33 6-38 16-48 (218)
333 PRK14489 putative bifunctional 21.2 1.9E+02 0.0042 26.5 5.2 36 5-40 207-242 (366)
334 PRK15411 rcsA colanic acid cap 21.2 2E+02 0.0044 23.9 4.9 33 106-138 46-87 (207)
335 PF01316 Arg_repressor: Argini 21.0 53 0.0011 22.3 1.1 20 19-38 21-40 (70)
336 cd02037 MRP-like MRP (Multiple 21.0 1.7E+02 0.0037 23.2 4.3 31 11-41 8-38 (169)
337 PF09001 DUF1890: Domain of un 20.9 1.2E+02 0.0026 23.6 3.0 31 16-46 12-42 (139)
338 PF10087 DUF2325: Uncharacteri 20.9 1.8E+02 0.0038 20.8 3.9 36 108-143 49-90 (97)
339 CHL00076 chlB photochlorophyll 20.8 1.6E+02 0.0034 28.7 4.6 27 106-135 373-399 (513)
340 PRK13236 nitrogenase reductase 20.8 1.4E+02 0.003 26.5 4.0 30 12-41 15-44 (296)
341 COG3460 Uncharacterized enzyme 20.8 90 0.0019 23.0 2.2 45 259-305 13-66 (117)
342 TIGR00521 coaBC_dfp phosphopan 20.8 1.7E+02 0.0037 27.3 4.7 44 2-46 2-45 (390)
343 PF00072 Response_reg: Respons 20.7 2.7E+02 0.0059 19.6 5.1 34 106-139 42-82 (112)
344 cd01141 TroA_d Periplasmic bin 20.3 1.8E+02 0.0039 23.4 4.4 39 91-136 60-100 (186)
345 PF05724 TPMT: Thiopurine S-me 20.3 1.3E+02 0.0029 25.4 3.6 28 6-39 40-67 (218)
346 PRK14494 putative molybdopteri 20.1 1.7E+02 0.0036 25.1 4.2 34 6-39 4-37 (229)
347 PF13844 Glyco_transf_41: Glyc 20.1 1.4E+02 0.003 28.6 4.0 36 267-302 282-324 (468)
348 PRK09126 hypothetical protein; 20.1 1.7E+02 0.0037 26.8 4.6 33 1-38 1-33 (392)
349 PF03446 NAD_binding_2: NAD bi 20.1 1.2E+02 0.0026 24.0 3.2 23 18-40 11-33 (163)
350 cd04950 GT1_like_1 Glycosyltra 20.1 1.6E+02 0.0035 26.9 4.4 37 6-42 7-44 (373)
351 TIGR02329 propionate_PrpR prop 20.0 1.8E+02 0.0039 28.4 4.9 42 90-137 131-172 (526)
352 PF03721 UDPG_MGDP_dh_N: UDP-g 20.0 1.1E+02 0.0024 25.0 3.0 32 5-41 2-33 (185)
353 cd03809 GT1_mtfB_like This fam 20.0 1.1E+02 0.0025 26.9 3.4 30 13-42 14-43 (365)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-47 Score=356.39 Aligned_cols=284 Identities=20% Similarity=0.351 Sum_probs=208.9
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCC-CCCCHHHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-DRNDFGKL 81 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~ 81 (322)
+.||++||+|++||++||++||++|+.||+.|||++|..+.... . ....+|++..+|+++|++. .......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 56999999999999999999999999999999999998764211 0 1113699999999887642 22233355
Q ss_pred HHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCC-cCCC
Q 044384 82 IEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGI-IDSH 160 (322)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~-~~~~ 160 (322)
+..+.+.+.+.++++|+++..+...+++|||+|+|++|+.++|+++|||++.|++++++.++++.+++.+...+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 555555677888888887642222468999999999999999999999999999999999888776555443322 1211
Q ss_pred CCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC-----CCcee
Q 044384 161 GTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF-----PELLP 235 (322)
Q Consensus 161 ~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~-----p~v~~ 235 (322)
+.. ++....+||+++++..++| .+.... ......++... ...+++++|++|||++||+.+++++ +++++
T Consensus 160 ~~~--~~~~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 160 EPK--GQQNELVPEFHPLRCKDFP-VSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred ccc--cCccccCCCCCCCChHHCc-chhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 100 1112358999888888888 433211 12222333222 2356789999999999999988775 57999
Q ss_pred eccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCCC
Q 044384 236 IGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPTT 302 (322)
Q Consensus 236 VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~~ 302 (322)
|||+++..... .+.++..++|++|||+|+++|||||||||...++.+|++|+|.|| |||+|++.
T Consensus 234 vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~ 304 (451)
T PLN02410 234 IGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGS 304 (451)
T ss_pred ecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 99998643211 111123457999999999999999999999999999999999999 99999653
No 2
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.4e-47 Score=354.48 Aligned_cols=281 Identities=25% Similarity=0.432 Sum_probs=208.5
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccc-hhhHHhhhccCCCCCCCeEEEecCCCCCCCC-C-CC
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYY-HKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-D-RN 76 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~-rGh~VT~it~~~~-~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~-~~ 76 (322)
|+++||+++|+|++||++||++||++|++ ||+.|||++|..+ .+.+... . ....+++++.++++++.+. . ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~-~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---H-NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---C-CCCCCEEEEEcCCCCCCccccccc
Confidence 88999999999999999999999999996 7999999999864 2221111 1 1113599999999887652 2 33
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCC
Q 044384 77 DFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGI 156 (322)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~ 156 (322)
+....+..+...+.+.++++++++...+ .+++|||+|.+++|+.++|+++|||.+.|++++++.++.+++++. +.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~~ 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----GN 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----cC
Confidence 4444555555567888999998764322 357999999999999999999999999999999999888765431 11
Q ss_pred cCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhcc--CCCEEEEcCchhccHHHHhhC--CC
Q 044384 157 IDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMR--AVNFHFCNSTYELESEAFTMF--PE 232 (322)
Q Consensus 157 ~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~Ns~~~le~~~~~~~--p~ 232 (322)
+ ....+||++.++..++| .+....+......+++.+..+... .+++|++|||++||+.+++.+ .+
T Consensus 152 ---------~-~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 220 (455)
T PLN02152 152 ---------N-SVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIE 220 (455)
T ss_pred ---------C-CeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCC
Confidence 0 12258999888889999 554332222223344434444332 357999999999999998887 36
Q ss_pred ceeeccCCCCCC-CCCCCC---CCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCC
Q 044384 233 LLPIGPLTASNR-QGNSAG---YFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 233 v~~VGpl~~~~~-~~~~~~---~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
+++|||+++... .....+ +.++.+.+|++|||+|+++|||||||||+..++.+|++|||.|| |||+|++
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 999999986321 010001 11123457999999998899999999999999999999999999 9999974
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-46 Score=351.33 Aligned_cols=291 Identities=28% Similarity=0.561 Sum_probs=212.0
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLI 82 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 82 (322)
++||+++|+|++||++||++||++|++||++||++|+..+.+++.+..+. ..+|+++.+|++.+.+. ..++..+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCCCCCCCc-cccHHHHH
Confidence 45999999999999999999999999999999999998876655433211 12599999998775421 12344444
Q ss_pred HHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCCcCCCCC
Q 044384 83 EKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSHGT 162 (322)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 162 (322)
..+...+.+.++++++++... .+++|||+|.|++|+.++|+++|||.+.||+++++.++.+.+++.+...+..+..+.
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 454445788899999876431 357999999999999999999999999999999988887766665433332221111
Q ss_pred CCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhh---------CCCc
Q 044384 163 PMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTM---------FPEL 233 (322)
Q Consensus 163 ~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~---------~p~v 233 (322)
+...+++..+||++.++..++| .+...........+.+.+..+...++++|++|||++||+.+++. .|++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v 237 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQI 237 (448)
T ss_pred cccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCE
Confidence 1111222368999888889999 54432211222244455556677789999999999999976552 3689
Q ss_pred eeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcc-cCCHHHHHHHHHcc-------eeeecCC
Q 044384 234 LPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLT-ILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 234 ~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~-~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
++|||+++.........+.++.+.+|++|||+|+++|||||||||+. .++.+|+++++.|| |||+|++
T Consensus 238 ~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 238 LQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred EEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 99999987432110001111234579999999988999999999986 78999999999999 9999974
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-46 Score=348.62 Aligned_cols=278 Identities=23% Similarity=0.465 Sum_probs=208.5
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCC--CCCCCHHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW--EDRNDFGK 80 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~--~~~~~~~~ 80 (322)
+.|+++||+|++||++||++||++|++||+.|||++|+.+.+++... ....|+++.+|+++|++ +...+...
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~~~~~ 78 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAGSVPE 78 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCcccccccCHHH
Confidence 45999999999999999999999999999999999998765543211 11359999999988863 22334555
Q ss_pred HHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCCcCCC
Q 044384 81 LIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSH 160 (322)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 160 (322)
++..+.+.+.+.++++|+++..++ .+++|||+|.|++|+.++|+++|||++.|++++++.+..+++ +. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~-~~~~----- 150 (449)
T PLN02173 79 YLQNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SY-INNG----- 150 (449)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HH-hccC-----
Confidence 666665567889999998764322 345999999999999999999999999999999888766543 11 1111
Q ss_pred CCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC---CCceeec
Q 044384 161 GTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF---PELLPIG 237 (322)
Q Consensus 161 ~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~---p~v~~VG 237 (322)
+ ....+||+|.++..++| .+.......+...+.+.+..+...++++|++|||++||+++.+.+ +++++||
T Consensus 151 -----~-~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VG 223 (449)
T PLN02173 151 -----S-LTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIG 223 (449)
T ss_pred -----C-ccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEc
Confidence 0 11247999888889999 544332222233444445566677899999999999999988776 5799999
Q ss_pred cCCCCC---CCC-CCC---CCCC--cCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-----eeeecCC
Q 044384 238 PLTASN---RQG-NSA---GYFW--REDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-----FWLRLPT 301 (322)
Q Consensus 238 pl~~~~---~~~-~~~---~~~~--~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-----lWv~r~~ 301 (322)
|+++.. ... ... ++.+ ..+++|.+|||+|+++|||||||||+..++.+|++|++.|| |||+|.+
T Consensus 224 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~ 301 (449)
T PLN02173 224 PTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRAS 301 (449)
T ss_pred ccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 998521 000 000 1122 12346999999999999999999999999999999999999 9999964
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.7e-46 Score=347.93 Aligned_cols=292 Identities=23% Similarity=0.433 Sum_probs=213.5
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh--hh-ccC-CC-CCCCeEEEecCCCCCCCC-CCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE--SL-QGK-NY-LEEQIRLVSIPDGMEPWE-DRN 76 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~--~~-~~~-~~-~~~~i~~~~i~~~~~~~~-~~~ 76 (322)
++||+++|+|++||++||++||++|+.||..|||++|..+..++.. .. +.. .. ....++|..+|+++|.+. ...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 5799999999999999999999999999999999999977665432 11 110 00 112377877888887652 233
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCC
Q 044384 77 DFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGI 156 (322)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~ 156 (322)
+...++..+.+.+.+.++++|+++..+. .+++|||+|.|++|+.++|+++|||+++|++++++.++.+.+++ .+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HGL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hcC
Confidence 4445555555567888999988764222 44699999999999999999999999999999999998877653 232
Q ss_pred cCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC---CCc
Q 044384 157 IDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF---PEL 233 (322)
Q Consensus 157 ~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~---p~v 233 (322)
.+.... .+++....+||+|.++..++| .+......+....+.+.+..+...++++|++|||++||+.+++.+ .++
T Consensus 162 ~~~~~~-~~~~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 162 VPFPTE-TEPEIDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred CCcccc-cCCCceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 221100 001122358999989999999 544322223333444555566777899999999999999988765 249
Q ss_pred eeeccCCCCCCCC-CCC-CCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCC
Q 044384 234 LPIGPLTASNRQG-NSA-GYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 234 ~~VGpl~~~~~~~-~~~-~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
++|||++...... .+. ++.+..+++|++|||+|+++|||||||||+..++.+|++||+.|| ||++|+.
T Consensus 240 ~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~ 316 (480)
T PLN02555 240 KPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPP 316 (480)
T ss_pred EEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 9999998632211 111 112234568999999998899999999999999999999999999 9999964
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.6e-46 Score=348.94 Aligned_cols=276 Identities=23% Similarity=0.335 Sum_probs=202.8
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC----CCCCCCCCC
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD----GMEPWEDRN 76 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La-~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~----~~~~~~~~~ 76 (322)
+++||+++|+|++||++||++||++|+ +||++||+++|+.+..++..... . ..+|+++.+|+ ++++.. .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~---~-~~~i~~~~lp~p~~~glp~~~--~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL---N-STGVDIVGLPSPDISGLVDPS--A 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc---c-CCCceEEECCCccccCCCCCC--c
Confidence 478999999999999999999999998 79999999999987654422210 1 12588988885 343111 1
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCC
Q 044384 77 DFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGI 156 (322)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~ 156 (322)
+....+......+.+.++++++++. .+++|||+|+|++|+.++|+++|||++.|++++++.++.+.++|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~-- 151 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD-- 151 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc--
Confidence 2222222333456778888887742 3689999999999999999999999999999999988777665543211
Q ss_pred cCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC------
Q 044384 157 IDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF------ 230 (322)
Q Consensus 157 ~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~------ 230 (322)
.... ....+. ...+||++.++..|+| ....... ...+..+.+......++++|++|||++||+++++.+
T Consensus 152 ~~~~-~~~~~~-~~~iPg~~~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 152 IKEE-HTVQRK-PLAMPGCEPVRFEDTL-DAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred cccc-cccCCC-CcccCCCCccCHHHhh-HhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 1100 000011 2368999988888888 4322222 123344445556677899999999999999988764
Q ss_pred -----CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeee
Q 044384 231 -----PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLR 298 (322)
Q Consensus 231 -----p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~ 298 (322)
+++++||||++..... ..+++|++|||+|+++|||||||||+..++.+|++||+.|| |||+
T Consensus 227 ~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 227 GRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred ccccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999998632111 13457999999998899999999999999999999999999 9999
Q ss_pred cCC
Q 044384 299 LPT 301 (322)
Q Consensus 299 r~~ 301 (322)
|++
T Consensus 300 r~~ 302 (481)
T PLN02992 300 RPP 302 (481)
T ss_pred eCC
Confidence 975
No 7
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.4e-46 Score=345.64 Aligned_cols=289 Identities=18% Similarity=0.304 Sum_probs=204.2
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEE--EeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCC--C
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTF--VNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE--D 74 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rG--h~VT~--it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~--~ 74 (322)
|.+.||+++|+|++||++||++||++|++|| +.||+ +++..+...+...........++|+++.+|++.+... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7889999999999999999999999999998 55665 4444333222111111111113599999998754221 1
Q ss_pred -CCCHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhh
Q 044384 75 -RNDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLID 153 (322)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~ 153 (322)
..+....+....+.+.+.++++|+++.. + .+++|||+|.|++|+.++|+++|||.+.|++++++.++++.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~- 157 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID- 157 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc-
Confidence 1122333333334577788888887632 1 35799999999999999999999999999999999999887755321
Q ss_pred cCCcCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC---
Q 044384 154 DGIIDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF--- 230 (322)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~--- 230 (322)
+..+..+. .+.....+||++.++..|+| .+.+..+ +....++.+......++++|++|||++||+.+++.+
T Consensus 158 -~~~~~~~~--~~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 158 -ETTPGKNL--KDIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred -cccccccc--ccCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 11110000 11122368999999999999 5554322 223344455556677889999999999999887765
Q ss_pred ---CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecC
Q 044384 231 ---PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLP 300 (322)
Q Consensus 231 ---p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~ 300 (322)
+++++||||+....... +.. ..+++|++|||+|+++|||||||||+..++.+|++|||.|| |||+|+
T Consensus 232 ~~~~~v~~vGPl~~~~~~~~--~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~ 308 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIED--RND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRN 308 (451)
T ss_pred CCCCCEEEEeeeccCccccc--ccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 47999999985322110 111 12357999999999999999999999999999999999999 999996
Q ss_pred C
Q 044384 301 T 301 (322)
Q Consensus 301 ~ 301 (322)
+
T Consensus 309 ~ 309 (451)
T PLN03004 309 P 309 (451)
T ss_pred C
Confidence 4
No 8
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.7e-46 Score=344.39 Aligned_cols=282 Identities=19% Similarity=0.269 Sum_probs=204.1
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccchhhHH--hhhccCCCCCCCeEEEecCCCCCCCC-CC-
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVV--ESLQGKNYLEEQIRLVSIPDGMEPWE-DR- 75 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~r-Gh~VT~it~~~~~~~~~--~~~~~~~~~~~~i~~~~i~~~~~~~~-~~- 75 (322)
|.++|++++|+|++||++||++||++|++| |..||++++..+...+. ....... ...+|+++.+|+....+- ..
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccccCCCCC
Confidence 788999999999999999999999999987 99999999876554331 1111110 112599999985432220 10
Q ss_pred CCHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCc-eEEEccchHHHHHHHHhhhhhhhc
Q 044384 76 NDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVR-GGVFWSSSAASVALVFRIPKLIDD 154 (322)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP-~i~~~~~~~~~~~~~~~~~~l~~~ 154 (322)
.+....+....+.+.+.++++|+++. .+++|||+|.|++|+.++|+++||| .+.|++++++.+..++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~-- 153 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD-- 153 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh--
Confidence 12332233334467888999998753 3579999999999999999999999 6899999998887777766432
Q ss_pred CCcCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC----
Q 044384 155 GIIDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF---- 230 (322)
Q Consensus 155 g~~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~---- 230 (322)
+..+.. ....+++ ..+||+|.++..++| .+..... ......+.+..+...++++|++|||++||+.+++.+
T Consensus 154 ~~~~~~-~~~~~~~-~~vPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 154 TVVEGE-YVDIKEP-LKIPGCKPVGPKELM-ETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred cccccc-cCCCCCe-eeCCCCCCCChHHCC-HhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 211110 0011222 368999999999999 4332222 112233334555678899999999999999887665
Q ss_pred -------CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------ee
Q 044384 231 -------PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FW 296 (322)
Q Consensus 231 -------p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lW 296 (322)
+++|+|||++...... ..+++|++|||+|+++|||||||||...++.+|++|||.|| ||
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~~-------~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlW 301 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVHV-------EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVW 301 (470)
T ss_pred ccccccCCceEEecCCCCCcccc-------cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEE
Confidence 5699999998522111 13357999999999999999999999999999999999999 99
Q ss_pred eecCC
Q 044384 297 LRLPT 301 (322)
Q Consensus 297 v~r~~ 301 (322)
|+|++
T Consensus 302 v~r~~ 306 (470)
T PLN03015 302 VLRRP 306 (470)
T ss_pred EEecC
Confidence 99965
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-45 Score=342.60 Aligned_cols=290 Identities=17% Similarity=0.276 Sum_probs=201.7
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccch-hhHHhhhccCCCCCCCeEEEecCCCCCCC--CCC
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPW--EDR 75 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rG--h~VT~it~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~--~~~ 75 (322)
|+++|++++|+|++||++||++||++|++|| +.||++++..+. ..+....+......+.|+++.+|++.... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8999999999999999999999999999998 999999998765 22222222111111369999999653211 112
Q ss_pred CCHHHHHHHHHHHchH----HHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhh
Q 044384 76 NDFGKLIEKFLQVMPR----KLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKL 151 (322)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (322)
.+....+....+.+.+ .+++++++...++ .+++|||+|.|++|+.++|+++|||.++|++++++.++.+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 2343333333334533 4455554432111 3469999999999999999999999999999999988887766532
Q ss_pred hhcC-CcCCCCCCCCccccccCCCC-CCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhh
Q 044384 152 IDDG-IIDSHGTPMSMQMFLIAPNM-PEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTM 229 (322)
Q Consensus 152 ~~~g-~~~~~~~~~~~~~~~~vP~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~ 229 (322)
.... ..+ .+..+ ....+||+ +.++..++| .+...... +..+.+.....++++++|+|||++||+++++.
T Consensus 160 ~~~~~~~~---~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 160 HSKDTSVF---VRNSE-EMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred cccccccC---cCCCC-CeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 1110 000 01111 22368998 679999999 54432221 23333445567889999999999999986533
Q ss_pred ------CCCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------ee
Q 044384 230 ------FPELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FW 296 (322)
Q Consensus 230 ------~p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lW 296 (322)
+|++++|||+++....+....+. ..+++|++|||+|+++|||||||||...++.+|++|++.|| ||
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~~~~~~-~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPHPEQDL-ARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCCCcccc-chhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 46899999998743211000001 12367999999998899999999999999999999999999 99
Q ss_pred eecCC
Q 044384 297 LRLPT 301 (322)
Q Consensus 297 v~r~~ 301 (322)
|+|++
T Consensus 310 ~~r~~ 314 (468)
T PLN02207 310 SLRTE 314 (468)
T ss_pred EEeCC
Confidence 99964
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.3e-45 Score=346.73 Aligned_cols=286 Identities=22% Similarity=0.348 Sum_probs=208.1
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCC----CEEEEEeCccchh----hHHhhhccCCCCCCCeEEEecCCCCCCC
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG----FRVTFVNTDYYHK----RVVESLQGKNYLEEQIRLVSIPDGMEPW 72 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rG----h~VT~it~~~~~~----~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 72 (322)
|+++||+++|+|++||++||++||++|+.|| +.|||+++..+.. .+....+.......+|+++.+|++.++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8999999999999999999999999999996 8999999876432 2322221111111259999999764221
Q ss_pred CCCCCHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhh
Q 044384 73 EDRNDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLI 152 (322)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~ 152 (322)
...+...++..+.+.+.+.++++|+++. .+++|||+|.|++|+.++|+++|||++.|++++++.++++.+++.+.
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1123334455445567788888887751 35799999999999999999999999999999999999887765432
Q ss_pred hcCCcCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC--
Q 044384 153 DDGIIDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF-- 230 (322)
Q Consensus 153 ~~g~~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~-- 230 (322)
+..+. +.....++ ..+||++.++..++| .+..... +....++....+...++++|++|||++||+.+.+.+
T Consensus 156 --~~~~~-~~~~~~~~-~~iPGlp~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 --EEVAV-EFEEMEGA-VDVPGLPPVPASSLP-APVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred --ccccC-cccccCcc-eecCCCCCCChHHCC-chhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 11110 01111112 258999989999999 5443222 112233334445567899999999999999887665
Q ss_pred ---------CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------
Q 044384 231 ---------PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR------- 294 (322)
Q Consensus 231 ---------p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l------- 294 (322)
|++++|||+++..... .....+++|.+|||+|+++|||||||||+..++.+|++||+.||
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 5799999998532111 00124567999999999999999999999999999999999999
Q ss_pred eeeecCCC
Q 044384 295 FWLRLPTT 302 (322)
Q Consensus 295 lWv~r~~~ 302 (322)
||++|.+.
T Consensus 305 lWv~~~~~ 312 (480)
T PLN00164 305 LWVLRGPP 312 (480)
T ss_pred EEEEcCCc
Confidence 99999753
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-45 Score=343.75 Aligned_cols=285 Identities=23% Similarity=0.339 Sum_probs=199.3
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC----CCCCCCC-CCCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP----DGMEPWE-DRND 77 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~----~~~~~~~-~~~~ 77 (322)
+.||+++|+|++||++||++||++|+.||+.||+++|+.+..++.... +.....|+++.+| +++|.+. ...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~---~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIP---SQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcc---ccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 469999999999999999999999999999999999998776553211 0111358999988 6676542 2222
Q ss_pred H----HHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhh
Q 044384 78 F----GKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLID 153 (322)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~ 153 (322)
. ...+....+.+.+.+++++++ .+++|||+|.|++|+.++|+++|||+++|++++++.++.+.+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 123334445577788888876 458999999999999999999999999999999988887654433333
Q ss_pred cCCcCCCCCCCCccccccCCCCC------CCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHH
Q 044384 154 DGIIDSHGTPMSMQMFLIAPNMP------EMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAF 227 (322)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~vP~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~ 227 (322)
.|..+ ..++....+|++. .++..++| .+.............+.+......++++||+|||++||+.++
T Consensus 157 ~~~~~-----~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 157 GGDLR-----STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred cccCC-----CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 33222 1111111245442 24556888 444321111111222233444567899999999999999988
Q ss_pred hhC-----CCceeeccCCCCC-CCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------
Q 044384 228 TMF-----PELLPIGPLTASN-RQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR------- 294 (322)
Q Consensus 228 ~~~-----p~v~~VGpl~~~~-~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l------- 294 (322)
+++ +++++|||+++.. ....+........++|++|||+|+++|||||||||+..++.+|++|||.||
T Consensus 231 ~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 231 DLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred HHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 775 5799999997631 111000000001257999999998899999999999999999999999999
Q ss_pred eeeecCCC
Q 044384 295 FWLRLPTT 302 (322)
Q Consensus 295 lWv~r~~~ 302 (322)
|||+|++.
T Consensus 311 lWv~r~~~ 318 (472)
T PLN02670 311 FWVLRNEP 318 (472)
T ss_pred EEEEcCCc
Confidence 99999753
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-44 Score=339.82 Aligned_cols=287 Identities=22% Similarity=0.305 Sum_probs=202.6
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC----CCCCCCC-CCC
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP----DGMEPWE-DRN 76 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~----~~~~~~~-~~~ 76 (322)
+++||+++|+|++||++||++||++|+.||+.|||++|+.+.+++....+ ...+|+++.+| +++|++. ...
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 36899999999999999999999999999999999999988766643211 11357877654 2444442 111
Q ss_pred C----HHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhh
Q 044384 77 D----FGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLI 152 (322)
Q Consensus 77 ~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~ 152 (322)
+ ....+......+.+.++++++++ + .+++|||+|.|++|+.++|+++|||++.||+++++.++.+++++...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 1 11122222334566677777653 1 46799999999999999999999999999999999999887654211
Q ss_pred hcCCcCCCCCCCC-ccc--cccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhh
Q 044384 153 DDGIIDSHGTPMS-MQM--FLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTM 229 (322)
Q Consensus 153 ~~g~~~~~~~~~~-~~~--~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~ 229 (322)
+......+ ++. +..+||++.++..++| .+.+.....+...+++.+.....+++++|++|||++||+++++.
T Consensus 160 -----~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 233 (477)
T PLN02863 160 -----PTKINPDDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEH 233 (477)
T ss_pred -----cccccccccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHH
Confidence 10000001 111 2358999888889998 54432211222334444444456678899999999999998876
Q ss_pred C------CCceeeccCCCCCCCCC---CCC-CCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-----
Q 044384 230 F------PELLPIGPLTASNRQGN---SAG-YFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR----- 294 (322)
Q Consensus 230 ~------p~v~~VGpl~~~~~~~~---~~~-~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l----- 294 (322)
+ +++++|||+++...... ..+ +....+++|.+|||+|+++|||||||||...++++|++|++.||
T Consensus 234 ~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~ 313 (477)
T PLN02863 234 LKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGV 313 (477)
T ss_pred HHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCC
Confidence 4 57999999986321110 001 11112457999999999899999999999999999999999999
Q ss_pred --eeeecCCC
Q 044384 295 --FWLRLPTT 302 (322)
Q Consensus 295 --lWv~r~~~ 302 (322)
||++|++.
T Consensus 314 ~flw~~~~~~ 323 (477)
T PLN02863 314 HFIWCVKEPV 323 (477)
T ss_pred cEEEEECCCc
Confidence 99999653
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-44 Score=339.00 Aligned_cols=285 Identities=24% Similarity=0.386 Sum_probs=197.2
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC-----CCCCCCC-CCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP-----DGMEPWE-DRN 76 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~-----~~~~~~~-~~~ 76 (322)
+.|++++|+|++||++||++||++|++||+.|||++|+.+..++....+........|+++.+| +++|++. ...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 4699999999999999999999999999999999999988765544322111111248999988 5777652 211
Q ss_pred C-----HHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhh
Q 044384 77 D-----FGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKL 151 (322)
Q Consensus 77 ~-----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (322)
+ +...+......+.+.++++|++. + .+++|||+|.|++|+.++|+++|||.++|++++++..+.++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~-~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~- 162 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA---K-PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL- 162 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C-CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH-
Confidence 1 12122222234667778877653 1 468999999999999999999999999999999988876543321
Q ss_pred hhcCCcCCCCCCCCccccccCCCCCC---CCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHh
Q 044384 152 IDDGIIDSHGTPMSMQMFLIAPNMPE---MNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFT 228 (322)
Q Consensus 152 ~~~g~~~~~~~~~~~~~~~~vP~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~ 228 (322)
..+..+ .+.+.. ...+||++. ++..++| .+........ .+........+++++|++|||++||+.+++
T Consensus 163 -~~~~~~---~~~~~~-~~~iPg~p~~~~l~~~dlp-~~~~~~~~~~---~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 163 -HNAHLS---VSSDSE-PFVVPGMPQSIEITRAQLP-GAFVSLPDLD---DVRNKMREAESTAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred -hccccc---CCCCCc-eeecCCCCccccccHHHCC-hhhcCcccHH---HHHHHHHhhcccCCEEEEecHHHhhHHHHH
Confidence 111111 111112 235899874 6777888 4332111111 222222223456789999999999998877
Q ss_pred hC-----CCceeeccCCCCCCCCCC---CCCCCc-CCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-----
Q 044384 229 MF-----PELLPIGPLTASNRQGNS---AGYFWR-EDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR----- 294 (322)
Q Consensus 229 ~~-----p~v~~VGpl~~~~~~~~~---~~~~~~-~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l----- 294 (322)
.+ +++++|||++.......+ .+.... ++++|++|||+|+++|||||||||...++.+|++|++.||
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred HHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 65 579999999753211000 011111 2357999999999899999999999999999999999999
Q ss_pred --eeeecCC
Q 044384 295 --FWLRLPT 301 (322)
Q Consensus 295 --lWv~r~~ 301 (322)
|||+|++
T Consensus 314 ~flW~~r~~ 322 (491)
T PLN02534 314 PFIWVIKTG 322 (491)
T ss_pred CEEEEEecC
Confidence 9999964
No 14
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-44 Score=332.43 Aligned_cols=268 Identities=24% Similarity=0.351 Sum_probs=193.1
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC--CCCCCC-CCCCC--
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP--DGMEPW-EDRND-- 77 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~--~~~~~~-~~~~~-- 77 (322)
++||++||+|++||++||++||++|+.||+.||+++|+.+...+.+. . .....-.++++.+| +++|.+ +...+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-LFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-cCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 57999999999999999999999999999999999998876544321 0 00101137777777 677665 22111
Q ss_pred --HHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcC
Q 044384 78 --FGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDG 155 (322)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g 155 (322)
....+......+.+.++++|++ .++||||+|+ ++|+.++|+++|||++.|++++++.++++.. + .+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 1112222233466788888876 3579999995 8999999999999999999999988887642 1 11
Q ss_pred CcCCCCCCCCccccccCCCCCC----CCccccccccccC-C-chhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhh
Q 044384 156 IIDSHGTPMSMQMFLIAPNMPE----MNSRDCFWAHIGD-L-TTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTM 229 (322)
Q Consensus 156 ~~~~~~~~~~~~~~~~vP~~~~----~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~ 229 (322)
..+ ..+||+|. ++..+++ .+... . ...+....++.+..+..+++++|++|||++||+.++++
T Consensus 151 ~~~-----------~~~pglp~~~v~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 151 ELG-----------VPPPGYPSSKVLLRKQDAY-TMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred cCC-----------CCCCCCCCCcccCcHhhCc-chhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 111 12477762 5666776 33221 1 11122223344444567789999999999999998877
Q ss_pred C-----CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eee
Q 044384 230 F-----PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWL 297 (322)
Q Consensus 230 ~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv 297 (322)
+ +++|+|||+++..... . ..+++|++|||+|+++|||||||||...++.+|+.|+|.|| +||
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~---~---~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT---R---ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc---c---cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 6 4699999997643111 0 13468999999999999999999999999999999999997 999
Q ss_pred ecCCC
Q 044384 298 RLPTT 302 (322)
Q Consensus 298 ~r~~~ 302 (322)
+|++.
T Consensus 293 ~r~~~ 297 (453)
T PLN02764 293 VKPPR 297 (453)
T ss_pred EeCCC
Confidence 99753
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-43 Score=332.37 Aligned_cols=286 Identities=21% Similarity=0.340 Sum_probs=199.5
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccchhhHH---hhhccCCC-CCCCeEEEecCCCCCCCCCCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHKRVV---ESLQGKNY-LEEQIRLVSIPDGMEPWEDRN 76 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rG--h~VT~it~~~~~~~~~---~~~~~~~~-~~~~i~~~~i~~~~~~~~~~~ 76 (322)
|.|++++|+|++||++||++||++|+.|| ..|||++|+.+..++. ....+... ...+|+++.+|++.+......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 45999999999999999999999999998 8999999987754321 11111111 123599999997754221111
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcc----CCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhh
Q 044384 77 DFGKLIEKFLQVMPRKLEELIEEINSR----EDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLI 152 (322)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~ 152 (322)
.+... ...+.+.+++.++++..+ +.++++|||+|+|++|+.++|+++|||++.|++++++.++.+.+++.+.
T Consensus 82 ---~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 ---TFQSY-IDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred ---HHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 22222 223445555655554311 1123589999999999999999999999999999999999887766532
Q ss_pred hcCCcCCCCCCCCccccccCCCCC-CCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC-
Q 044384 153 DDGIIDSHGTPMSMQMFLIAPNMP-EMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF- 230 (322)
Q Consensus 153 ~~g~~~~~~~~~~~~~~~~vP~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~- 230 (322)
..+..+..+.. +......+||++ +++..++| .+... ......+.+......++++|++|||++||+.+...+
T Consensus 158 ~~~~~~~~~~~-~~~~~v~iPgl~~pl~~~dlp-~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSELE-DSEVELDVPSLTRPYPVKCLP-SVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCccccC-CCCceeECCCCCCCCCHHHCC-CcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 11111100111 111123589984 78888998 44322 122344445566677899999999999999876543
Q ss_pred ------CCceeeccCC-CCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------ee
Q 044384 231 ------PELLPIGPLT-ASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FW 296 (322)
Q Consensus 231 ------p~v~~VGpl~-~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lW 296 (322)
|++++|||++ ...... +....++++|++|||+|+++|||||||||+..++.+|+++++.|| ||
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred hcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 6899999994 322211 000125578999999998899999999999999999999999999 99
Q ss_pred eecCC
Q 044384 297 LRLPT 301 (322)
Q Consensus 297 v~r~~ 301 (322)
++|++
T Consensus 309 ~~~~~ 313 (481)
T PLN02554 309 SLRRA 313 (481)
T ss_pred EEcCC
Confidence 99974
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.1e-43 Score=328.79 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=198.8
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCC---EEEEEeCccchh-hHHhhhccCCCCCCCeEEEecCCCCCC-CCC-
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGF---RVTFVNTDYYHK-RVVESLQGKNYLEEQIRLVSIPDGMEP-WED- 74 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh---~VT~it~~~~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~-~~~- 74 (322)
|+++||++||+|++||++||++||++|+.||. .||++++..+.. ......+......++|+++.+|++..+ +..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78999999999999999999999999999993 567766543321 111111111111135999999975422 111
Q ss_pred -CCCHHHHHHHHHHHchHHHHHHHHHHhcc----CCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhh
Q 044384 75 -RNDFGKLIEKFLQVMPRKLEELIEEINSR----EDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIP 149 (322)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (322)
.......+..+...+.+.+++.++++..+ +..+++|||+|.|++|+.++|+++|||++.|++++++.++.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11121222333345666777777665321 1125699999999999999999999999999999999988877665
Q ss_pred hhhhcCCcCCCCCCC-CccccccCCCCC-CCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHH
Q 044384 150 KLIDDGIIDSHGTPM-SMQMFLIAPNMP-EMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAF 227 (322)
Q Consensus 150 ~l~~~g~~~~~~~~~-~~~~~~~vP~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~ 227 (322)
... +..+. +... ..+....+||++ .++..++| .+.+... .++.+.+..+..+++++|++|||++||++++
T Consensus 161 ~~~--~~~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 161 ERH--RKTAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred Hhc--ccccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 321 11110 0100 001123589984 68888888 4332221 1233445556678899999999999999887
Q ss_pred hhC-------CCceeeccCCCCCCCCCCCCCCC-cCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-----
Q 044384 228 TMF-------PELLPIGPLTASNRQGNSAGYFW-REDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR----- 294 (322)
Q Consensus 228 ~~~-------p~v~~VGpl~~~~~~~~~~~~~~-~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l----- 294 (322)
+++ |++++|||+++...... .... ..+++|++|||+|+++|||||||||+..++.+|++||+.||
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 654 68999999987432110 0110 12357999999998899999999999999999999999999
Q ss_pred --eeeecCC
Q 044384 295 --FWLRLPT 301 (322)
Q Consensus 295 --lWv~r~~ 301 (322)
||++|++
T Consensus 311 ~flw~~~~~ 319 (475)
T PLN02167 311 RFLWSIRTN 319 (475)
T ss_pred cEEEEEecC
Confidence 9999975
No 17
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.4e-42 Score=324.32 Aligned_cols=281 Identities=24% Similarity=0.437 Sum_probs=202.3
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHH--HHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQC--LAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGK 80 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~--La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 80 (322)
+.||+++|+|++||++||++||++ |++||++|||++|+.+.+++.. .. .....+++..+|++++++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~-~~---~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLST-VE---KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcc-cc---CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 469999999999999999999999 5699999999999987655422 11 11235888888888776532 23334
Q ss_pred HHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCCcCCC
Q 044384 81 LIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSH 160 (322)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 160 (322)
++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||.+.||+.++..++.+.+++. ..+..+.
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~--~~~~~~~- 153 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM--KTNSFPD- 153 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh--ccCCCCc-
Confidence 5555544556667777655 469999999999999999999999999999999998887765432 1111110
Q ss_pred CCCCCccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC---CCceeec
Q 044384 161 GTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF---PELLPIG 237 (322)
Q Consensus 161 ~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~---p~v~~VG 237 (322)
. .+.+....+||++.++..+++ .+...... ......+.+..+....+++|++|||++||+++.+.+ +++++||
T Consensus 154 -~-~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VG 229 (456)
T PLN02210 154 -L-EDLNQTVELPALPLLEVRDLP-SFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIG 229 (456)
T ss_pred -c-cccCCeeeCCCCCCCChhhCC-hhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEc
Confidence 0 010112358999888888888 44332211 112222223434556789999999999999988875 5799999
Q ss_pred cCCCCC---C-CCCC-CC---CCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCC
Q 044384 238 PLTASN---R-QGNS-AG---YFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 238 pl~~~~---~-~~~~-~~---~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
|+++.. . .... .+ +.+..+++|.+|||+|+++|||||||||...++.+|+++++.|| ||++|++
T Consensus 230 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 230 PLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred ccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 998521 1 1000 01 12334567999999998899999999999999999999999999 9999964
No 18
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.6e-43 Score=325.50 Aligned_cols=263 Identities=24% Similarity=0.397 Sum_probs=183.2
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC----CCCCCCC-CCCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP----DGMEPWE-DRND 77 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~----~~~~~~~-~~~~ 77 (322)
++||+++|+|++||++||++||++|++||++||++++..+...+.... .....|+++.++ +++|.+. ...+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCccccccc
Confidence 569999999999999999999999999999999999987665543221 111247885553 5666552 2222
Q ss_pred HH----HHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhh
Q 044384 78 FG----KLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLID 153 (322)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~ 153 (322)
+. ..+......+.+.++++++. .++||||+|+ ++|+.++|+++|||++.|++++++.++++.+ +. ..
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~-~~ 150 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR-AE 150 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH-hh
Confidence 21 11222222344555555543 4579999995 8999999999999999999999998887654 21 00
Q ss_pred cCCcCCCCCCCCccccccCCCCCC----CCccc--cccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHH
Q 044384 154 DGIIDSHGTPMSMQMFLIAPNMPE----MNSRD--CFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAF 227 (322)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~vP~~~~----~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~ 227 (322)
.+ ..+||+|. ++..+ ++ .+... ..+.+.+..+...++++|++|||++||+.++
T Consensus 151 ~~--------------~~~pg~p~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 209 (446)
T PLN00414 151 LG--------------FPPPDYPLSKVALRGHDANVC-SLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLC 209 (446)
T ss_pred cC--------------CCCCCCCCCcCcCchhhcccc-hhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHH
Confidence 00 01355543 22222 22 11110 1122333445667799999999999999988
Q ss_pred hhC-----CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------e
Q 044384 228 TMF-----PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------F 295 (322)
Q Consensus 228 ~~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------l 295 (322)
+.+ +++++|||+++...... + ...+++|++|||+|+++|||||||||...++.+|+.|+|.|| |
T Consensus 210 ~~~~~~~~~~v~~VGPl~~~~~~~~--~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Fl 285 (446)
T PLN00414 210 DFIERQCQRKVLLTGPMLPEPQNKS--G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFL 285 (446)
T ss_pred HHHHHhcCCCeEEEcccCCCccccc--C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeE
Confidence 765 46999999975332110 1 012357999999999999999999999999999999999998 9
Q ss_pred eeecCCCC
Q 044384 296 WLRLPTTR 303 (322)
Q Consensus 296 Wv~r~~~~ 303 (322)
||+|++..
T Consensus 286 wvvr~~~~ 293 (446)
T PLN00414 286 IAVMPPKG 293 (446)
T ss_pred EEEecCCC
Confidence 99998643
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-42 Score=322.36 Aligned_cols=263 Identities=24% Similarity=0.385 Sum_probs=187.2
Q ss_pred CC-CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEec--C--CCCCCCCC-
Q 044384 1 MS-SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSI--P--DGMEPWED- 74 (322)
Q Consensus 1 m~-~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i--~--~~~~~~~~- 74 (322)
|. ++|+++||+|++||++||++||++|++|||+||++|+..+...+.+. ......+++..+ + ++++.+..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCCccCCCCCccc
Confidence 44 56999999999999999999999999999999999988765554321 111124666654 3 45655422
Q ss_pred CCCHH----HHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhh
Q 044384 75 RNDFG----KLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPK 150 (322)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~ 150 (322)
..++. ..+......+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++++.++ +.+++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 22222 11222233455666666655 468999999 6899999999999999999999998764 433321
Q ss_pred hhhcCCcCCCCCCCCccccccCCCCCC----CCccccccccccCCchhhHHHHHHH-HHHHhccCCCEEEEcCchhccHH
Q 044384 151 LIDDGIIDSHGTPMSMQMFLIAPNMPE----MNSRDCFWAHIGDLTTQKIFFDLLD-RNTRAMRAVNFHFCNSTYELESE 225 (322)
Q Consensus 151 l~~~g~~~~~~~~~~~~~~~~vP~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vl~Ns~~~le~~ 225 (322)
+..+ ..+||+|. ++..+++ .+.. .....+.+. ...+...++++|++|||++||+.
T Consensus 149 ----~~~~-----------~~~pglp~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~ 208 (442)
T PLN02208 149 ----GKLG-----------VPPPGYPSSKVLFRENDAH-ALAT----LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGK 208 (442)
T ss_pred ----cccC-----------CCCCCCCCcccccCHHHcC-cccc----cchHHHHHHHHHHhhhccCCEEEEECHHHHHHH
Confidence 1100 12577764 4567777 4311 112222222 22345668999999999999998
Q ss_pred HHhhC-----CCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc------
Q 044384 226 AFTMF-----PELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR------ 294 (322)
Q Consensus 226 ~~~~~-----p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l------ 294 (322)
+++++ |++++|||+++..... ..++++|++|||+|+++|||||||||+..++.+|+.|++.||
T Consensus 209 ~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~p 282 (442)
T PLN02208 209 FCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLP 282 (442)
T ss_pred HHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCc
Confidence 88764 6899999998743211 025678999999998899999999999999999999999986
Q ss_pred -eeeecCC
Q 044384 295 -FWLRLPT 301 (322)
Q Consensus 295 -lWv~r~~ 301 (322)
+|++|.+
T Consensus 283 f~wv~r~~ 290 (442)
T PLN02208 283 FLIAVKPP 290 (442)
T ss_pred EEEEEeCC
Confidence 9999965
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.2e-41 Score=315.40 Aligned_cols=286 Identities=21% Similarity=0.372 Sum_probs=208.3
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCC-CCCCHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-DRNDFG 79 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~ 79 (322)
+.||+++|+|++||++||++||++|++| ||+||++++..+.+.+.... . ..+++|+.+|++++... ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~----~-~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP----K-PDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC----C-CCCEEEEECCCCCCCccccccCHH
Confidence 5799999999999999999999999999 99999999998776654321 1 13699999998766542 223444
Q ss_pred HHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCCcCC
Q 044384 80 KLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDS 159 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~~~~ 159 (322)
.++..+.+.+.+.++++++++. .++||||+|.+++|+..+|+++|||++.|+++++..++.+.+++.+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 4555544456777888887752 368999999999999999999999999999999988887766554322222221
Q ss_pred CCCCC-CccccccCCCCCCCCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCchhccHHHHhhC-----CCc
Q 044384 160 HGTPM-SMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTYELESEAFTMF-----PEL 233 (322)
Q Consensus 160 ~~~~~-~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~~le~~~~~~~-----p~v 233 (322)
. ... .+.....+||++.++..+++ .+.... .....+.+.+......++++|++|||++||+.+.+.+ +++
T Consensus 161 ~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~ 236 (459)
T PLN02448 161 E-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPV 236 (459)
T ss_pred c-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCce
Confidence 1 000 11122358999888888888 444322 1222344445555667789999999999999877664 479
Q ss_pred eeeccCCCCCCCCCCCCC--CCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCC
Q 044384 234 LPIGPLTASNRQGNSAGY--FWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 234 ~~VGpl~~~~~~~~~~~~--~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
++|||+.+.......... ....+.+|.+|||+|+++|||||||||+..++.+|+++++.|| ||++|.+
T Consensus 237 ~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~ 313 (459)
T PLN02448 237 YPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE 313 (459)
T ss_pred EEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 999999763211100000 0012347999999998899999999999999999999999999 9999865
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2e-40 Score=313.02 Aligned_cols=283 Identities=27% Similarity=0.413 Sum_probs=189.7
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccC----CCCCCCeEEEecC---CCCCCCC-C
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGK----NYLEEQIRLVSIP---DGMEPWE-D 74 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~----~~~~~~i~~~~i~---~~~~~~~-~ 74 (322)
+.||+++|+|++||++||++||++|++||++|||++++.+...+.+..+.. ......+....+| +++|.+. .
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 569999999999999999999999999999999999998776554332110 0001134555565 4565441 1
Q ss_pred CC--------CHHHHHHHHH---HHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHH
Q 044384 75 RN--------DFGKLIEKFL---QVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVA 143 (322)
Q Consensus 75 ~~--------~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~ 143 (322)
.. ....++..+. ..+.+.+++++++ .++||||+|.+++|+.++|+++|||.++||+++++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 10 1112222222 2233444444433 46899999999999999999999999999999998877
Q ss_pred HHHhhhhhhhcCCcCCCCCCCCccccccCCCCCC---CCccccccccccCCchhhHHHHHHHHHHHhccCCCEEEEcCch
Q 044384 144 LVFRIPKLIDDGIIDSHGTPMSMQMFLIAPNMPE---MNSRDCFWAHIGDLTTQKIFFDLLDRNTRAMRAVNFHFCNSTY 220 (322)
Q Consensus 144 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~vP~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ns~~ 220 (322)
.+..+........ .+..+. ...+||+|. ++..+++ .. ........++....+...++++|++|||+
T Consensus 159 ~~~~~~~~~~~~~-----~~~~~~-~~~~pg~p~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~ 227 (482)
T PLN03007 159 ASYCIRVHKPQKK-----VASSSE-PFVIPDLPGDIVITEEQIN-DA----DEESPMGKFMKEVRESEVKSFGVLVNSFY 227 (482)
T ss_pred HHHHHHhcccccc-----cCCCCc-eeeCCCCCCccccCHHhcC-CC----CCchhHHHHHHHHHhhcccCCEEEEECHH
Confidence 6654321100000 111111 124788862 3444555 21 11222334455555667889999999999
Q ss_pred hccHHHHhhC-----CCceeeccCCCCCCCC--CC-CC-CCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHH
Q 044384 221 ELESEAFTMF-----PELLPIGPLTASNRQG--NS-AG-YFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFV 291 (322)
Q Consensus 221 ~le~~~~~~~-----p~v~~VGpl~~~~~~~--~~-~~-~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela 291 (322)
+||+++.+.+ .++++|||+.+..... .. .+ ..+..+++|.+|||+|+++|||||||||+..++.+|+.+++
T Consensus 228 ~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 228 ELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 9999977776 3699999987532210 00 01 11113467999999998899999999999999999999999
Q ss_pred Hcc-------eeeecCCC
Q 044384 292 DAR-------FWLRLPTT 302 (322)
Q Consensus 292 ~~l-------lWv~r~~~ 302 (322)
.|| ||++|++.
T Consensus 308 ~~l~~~~~~flw~~~~~~ 325 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNE 325 (482)
T ss_pred HHHHHCCCCEEEEEecCC
Confidence 999 99999753
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.94 E-value=4.7e-26 Score=215.89 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=165.3
Q ss_pred eEEEE-cCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC---CCC----CCC--C
Q 044384 5 HVLVM-PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD---GME----PWE--D 74 (322)
Q Consensus 5 hv~~~-p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~---~~~----~~~--~ 74 (322)
+|+++ |.++.||++.+..++++|++|||+||++++...... ... ...+++...++. ... ... .
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-ASH------LCGNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-ccC------CCCCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 56644 889999999999999999999999999988642110 000 013455544431 100 000 0
Q ss_pred C-C---CHHH----HHHHHHHHc-----hHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHc-CCceEEEccchHH
Q 044384 75 R-N---DFGK----LIEKFLQVM-----PRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKM-NVRGGVFWSSSAA 140 (322)
Q Consensus 75 ~-~---~~~~----~~~~~~~~~-----~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l-~iP~i~~~~~~~~ 140 (322)
. . +... ....+...| .+.+.++|++ ++.+||+||+|.+..|+..+|+++ ++|.|.+++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~----~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN----KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc----CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 0 0000 011111122 2334444431 115799999999989999999999 9998888775554
Q ss_pred HHHHHHhhhhhhhcCCcCCCCCCCCccccccCCCCCCCCccccccccccCCchh----------------hHHH-HHHH-
Q 044384 141 SVALVFRIPKLIDDGIIDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQ----------------KIFF-DLLD- 202 (322)
Q Consensus 141 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~----------------~~~~-~~~~- 202 (322)
....... |- .+.+++|+|.+......+|. ++.|..+.. +.+. +++.
T Consensus 171 ~~~~~~~-------gg--------~p~~~syvP~~~~~~~~~Ms-f~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~ 234 (507)
T PHA03392 171 AENFETM-------GA--------VSRHPVYYPNLWRSKFGNLN-VWETINEIYTELRLYNEFSLLADEQNKLLKQQFGP 234 (507)
T ss_pred hhHHHhh-------cc--------CCCCCeeeCCcccCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCC
Confidence 3322211 20 12345688876544334444 333332210 1111 1111
Q ss_pred ---HHHHhccCCCEEEEcCchhccHHHHhhCCCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCc
Q 044384 203 ---RNTRAMRAVNFHFCNSTYELESEAFTMFPELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSL 279 (322)
Q Consensus 203 ---~~~~~~~~~~~vl~Ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~ 279 (322)
...+..++++++|+|+++.+|++. +..|+++.|||++.+..+. .++++++.+|||++ ++|||||||||+
T Consensus 235 ~~~~~~~l~~~~~l~lvns~~~~d~~r-p~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~-~~g~V~vS~GS~ 306 (507)
T PHA03392 235 DTPTIRELRNRVQLLFVNVHPVFDNNR-PVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNS-TNGVVYVSFGSS 306 (507)
T ss_pred CCCCHHHHHhCCcEEEEecCccccCCC-CCCCCeeeecccccCCCCC------CCCCHHHHHHHhcC-CCcEEEEECCCC
Confidence 122344677899999999999984 7889999999999743221 13788999999986 568999999998
Q ss_pred c---cCCHHHHHHHHHcc-------eeeecCCC
Q 044384 280 T---ILDQVQFQEFVDAR-------FWLRLPTT 302 (322)
Q Consensus 280 ~---~l~~~q~~ela~~l-------lWv~r~~~ 302 (322)
. .++.++++.++.+| ||+..++.
T Consensus 307 ~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~ 339 (507)
T PHA03392 307 IDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV 339 (507)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 6 47899999999998 99998643
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.93 E-value=3.8e-28 Score=232.32 Aligned_cols=261 Identities=21% Similarity=0.245 Sum_probs=136.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCC---CCCCH---
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE---DRNDF--- 78 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~---~~~~~--- 78 (322)
||+++|. ++||+++|..++++|++|||+||++++.... .+... ...+++++.++.+.+... .....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888884 8899999999999999999999999875422 11111 113567777665443321 11111
Q ss_pred -----------HHHHHHH---H----HHchHHH--HHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 044384 79 -----------GKLIEKF---L----QVMPRKL--EELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 79 -----------~~~~~~~---~----~~~~~~~--~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (322)
...+... . ..|...+ .++++.+.+ .+||++|+|.+.+|+..+|+++|+|.+.+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 0011110 0 1111100 111112221 469999999999999999999999987654433
Q ss_pred HHHHHHHHhhhhhhhcCCcCCCCCCCCccccccCCCCCCCCccccccccccCCchhhHH-HHHHHH--------------
Q 044384 139 AASVALVFRIPKLIDDGIIDSHGTPMSMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIF-FDLLDR-------------- 203 (322)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-------------- 203 (322)
...... . ...| .+.+++++|....-...+|. ++.|..+..... .++..+
T Consensus 151 ~~~~~~-----~-~~~g---------~p~~psyvP~~~s~~~~~ms-f~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (500)
T PF00201_consen 151 PMYDLS-----S-FSGG---------VPSPPSYVPSMFSDFSDRMS-FWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYF 214 (500)
T ss_dssp SCSCCT-----C-CTSC---------CCTSTTSTTCBCCCSGTTSS-SST--TTSHHHHHHHHHHHHGGGS-TTS-EEES
T ss_pred ccchhh-----h-hccC---------CCCChHHhccccccCCCccc-hhhhhhhhhhhhhhccccccchhhHHHHHhhhc
Confidence 211100 0 0001 12234566655322223344 344333321111 111100
Q ss_pred -----HHHhccCCCEEEEcCchhccHHHHhhCCCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCC
Q 044384 204 -----NTRAMRAVNFHFCNSTYELESEAFTMFPELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGS 278 (322)
Q Consensus 204 -----~~~~~~~~~~vl~Ns~~~le~~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS 278 (322)
..+..++++.+++|++..++.+. +.+|++++|||++..++++ +++++++|+|+.+++|||||||||
T Consensus 215 ~~~~~~~~~~~~~~l~l~ns~~~ld~pr-p~~p~v~~vGgl~~~~~~~--------l~~~~~~~~~~~~~~~vv~vsfGs 285 (500)
T PF00201_consen 215 GFPFSFRELLSNASLVLINSHPSLDFPR-PLLPNVVEVGGLHIKPAKP--------LPEELWNFLDSSGKKGVVYVSFGS 285 (500)
T ss_dssp S-GGGCHHHHHHHHHCCSSTEEE----H-HHHCTSTTGCGC-S----T--------CHHHHHHHTSTTTTTEEEEEE-TS
T ss_pred ccccccHHHHHHHHHHhhhccccCcCCc-chhhcccccCccccccccc--------cccccchhhhccCCCCEEEEecCc
Confidence 11223355677999999999884 6789999999999865543 788999999986678999999999
Q ss_pred cc-cCCHHHHHHHHHcc-------eeeecCC
Q 044384 279 LT-ILDQVQFQEFVDAR-------FWLRLPT 301 (322)
Q Consensus 279 ~~-~l~~~q~~ela~~l-------lWv~r~~ 301 (322)
++ .++++++++++.|| ||++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~ 316 (500)
T PF00201_consen 286 IVSSMPEEKLKEIAEAFENLPQRFIWKYEGE 316 (500)
T ss_dssp SSTT-HHHHHHHHHHHHHCSTTEEEEEETCS
T ss_pred ccchhHHHHHHHHHHHHhhCCCccccccccc
Confidence 87 57778899999999 9999983
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=1.3e-24 Score=207.85 Aligned_cols=287 Identities=26% Similarity=0.362 Sum_probs=161.1
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCC-C--CCCCeEEEecCCCCCCCCCCC--C
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKN-Y--LEEQIRLVSIPDGMEPWEDRN--D 77 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~-~--~~~~i~~~~i~~~~~~~~~~~--~ 77 (322)
+.|++++|+|++||++|+..+|++|++|||+||++++..+............ . ....+.+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4689999999999999999999999999999999999865443211000000 0 000011111111222211100 1
Q ss_pred HHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcC-CceEEEccchHHHHHHHHhhhhhhhcCC
Q 044384 78 FGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMN-VRGGVFWSSSAASVALVFRIPKLIDDGI 156 (322)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~-iP~i~~~~~~~~~~~~~~~~~~l~~~g~ 156 (322)
.......+...+...+++.+..+......+|||+|+|.|..|...+|...+ ++..++++.++.........+. .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~----~~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL----SY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc----cc
Confidence 111122233334444545333322222134999999999888888888875 9999998888876654322111 12
Q ss_pred cCCCCCCCCccccccCCCCC-CCCccccccccccCCch---hhHH-HHHH-------HHHHHhccCCCEEEEcCchhccH
Q 044384 157 IDSHGTPMSMQMFLIAPNMP-EMNSRDCFWAHIGDLTT---QKIF-FDLL-------DRNTRAMRAVNFHFCNSTYELES 224 (322)
Q Consensus 157 ~~~~~~~~~~~~~~~vP~~~-~~~~~~l~~~~~~~~~~---~~~~-~~~~-------~~~~~~~~~~~~vl~Ns~~~le~ 224 (322)
+|........+.. .+++.. .+....++ .+...... +... ..+. ........+++.+++|+...++.
T Consensus 161 ~p~~~~~~~~~~~-~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 161 VPSPFSLSSGDDM-SFPERVPNLIKKDLP-SFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cCcccCccccccC-cHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 2210000000000 001000 01111111 10000000 0000 0010 01123455666778888877776
Q ss_pred HHHhhCCCceeeccCCCCCCCCCCCCCCCcCCCccccccCCCCCC--cEEEEecCCcc---cCCHHHHHHHHHcc-----
Q 044384 225 EAFTMFPELLPIGPLTASNRQGNSAGYFWREDSNCLKWLDQQQPS--SVIYAAFGSLT---ILDQVQFQEFVDAR----- 294 (322)
Q Consensus 225 ~~~~~~p~v~~VGpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~--sVIYvSfGS~~---~l~~~q~~ela~~l----- 294 (322)
...+..+++++|||++...... ....|++|+|.+++. |||||||||++ .++++|.++|+.||
T Consensus 239 ~~~~~~~~v~~IG~l~~~~~~~--------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~ 310 (496)
T KOG1192|consen 239 EPRPLLPKVIPIGPLHVKDSKQ--------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQG 310 (496)
T ss_pred CCCCCCCCceEECcEEecCccc--------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCC
Confidence 3333468999999999863322 122688999988776 99999999998 89999999999999
Q ss_pred ---eeeecCCCC
Q 044384 295 ---FWLRLPTTR 303 (322)
Q Consensus 295 ---lWv~r~~~~ 303 (322)
||++|++..
T Consensus 311 ~~FiW~~~~~~~ 322 (496)
T KOG1192|consen 311 VTFLWKYRPDDS 322 (496)
T ss_pred ceEEEEecCCcc
Confidence 899998654
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.77 E-value=5.8e-17 Score=150.49 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=131.4
Q ss_pred cCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCC-----CCCHHHHHHH
Q 044384 10 PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWED-----RNDFGKLIEK 84 (322)
Q Consensus 10 p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~-----~~~~~~~~~~ 84 (322)
.+|+.||++|+++||++|.+|||+||++++..+.+.+.. .++.++.+++....... ..+....+..
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA---------AGAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH---------cCCEEEecCCcCccccccccccCcchHHHHHH
Confidence 578999999999999999999999999999877766644 36788877754332110 0122333333
Q ss_pred HHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHHHHHHHhhhhhhhcCCcCCCCCCC
Q 044384 85 FLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAASVALVFRIPKLIDDGIIDSHGTPM 164 (322)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 164 (322)
+...+...+.++++.+.. .++||||+|.+..|+..+|+++|||+|.+++..... . ..+.. . .|
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~---~-~~~~~---~-~~------ 135 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN---E-EFEEM---V-SP------ 135 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc---c-ccccc---c-cc------
Confidence 332233333333333222 579999999988899999999999999885432110 0 00000 0 00
Q ss_pred CccccccCCCCCCCCccccccccccCCchhhHHHHHHHHH-------HH-hccCCCEEEEcCchhccHHHHhhCCCceee
Q 044384 165 SMQMFLIAPNMPEMNSRDCFWAHIGDLTTQKIFFDLLDRN-------TR-AMRAVNFHFCNSTYELESEAFTMFPELLPI 236 (322)
Q Consensus 165 ~~~~~~~vP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~vl~Ns~~~le~~~~~~~p~v~~V 236 (322)
.-+++.. ......... ......+.++..+. .. .....+..+..+-..++++..+..+++..|
T Consensus 136 ------~~~~~~~--~~~~~~~~~--~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 205 (392)
T TIGR01426 136 ------AGEGSAE--EGAIAERGL--AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFV 205 (392)
T ss_pred ------cchhhhh--hhccccchh--HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEE
Confidence 0000000 000000000 00001111111100 00 011222345555555655432334578999
Q ss_pred ccCCCCCCCCCCCCCCCcCCCccccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc
Q 044384 237 GPLTASNRQGNSAGYFWREDSNCLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR 294 (322)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l 294 (322)
||+..... +...|.+.++.+.+|||||||......+.+++++.+|
T Consensus 206 Gp~~~~~~-------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al 250 (392)
T TIGR01426 206 GPCIGDRK-------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAF 250 (392)
T ss_pred CCCCCCcc-------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHH
Confidence 99764321 1223777666778999999998766667888888887
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.74 E-value=2.8e-17 Score=153.05 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=86.4
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCC---C------
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE---D------ 74 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~---~------ 74 (322)
+||+++++|+.||++|+++|+++|.+|||+||++++......+.. .+++++.+++..+... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 479999999999999999999999999999999999866555543 3678877765322110 0
Q ss_pred ---CCCHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 044384 75 ---RNDFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (322)
..........+.......+.++++.+.. .++||||+|.+..++..+|+++|||++.++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeeccc
Confidence 0011112222222333444444444322 579999999988888999999999999998654
No 27
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.04 E-value=6.1e-10 Score=87.90 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=75.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKF 85 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (322)
|++...++.||++|++.|+++|.+|||+|++.++....+.+.. .+++++.++... ...............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecCCc-CcCcccchhhhhhhH
Confidence 5788889999999999999999999999999999887776643 479999887540 000000011111111
Q ss_pred HHH--chHHHHHHHHHHhcc------CCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 044384 86 LQV--MPRKLEELIEEINSR------EDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 86 ~~~--~~~~~~~ll~~l~~~------~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (322)
.+. .-..+.+.+.+...+ +....|+++.+.....+..+|+++++|.+.....+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 110 011122233222111 11246788888877788899999999999876544
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-09 Score=100.58 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCC--C-CCCCHH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW--E-DRNDFG 79 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~--~-~~~~~~ 79 (322)
++|++++..|..||++|.+.|+++|.++||+|+++++....+.+... ++.|..++...... . ......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 35799999999999999999999999999999999998887777553 45565554321111 1 000011
Q ss_pred H-HHHHH--HHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEc
Q 044384 80 K-LIEKF--LQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 80 ~-~~~~~--~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~ 135 (322)
. +.... .........+++.+ ..+|.++.|.-.... .++...++|++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 123 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE------LEPDLVVDDARLSLG-LAARLLGIPVVGIN 123 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh------cchhhhhcchhhhhh-hhhhhcccchhhhh
Confidence 1 11111 11112222233333 468988888665544 77888888877654
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.32 E-value=9.9e-06 Score=72.96 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=69.7
Q ss_pred CeEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCC-CCCCCHHHH
Q 044384 4 PHVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW-EDRNDFGKL 81 (322)
Q Consensus 4 ~hv~~~p~p-~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~-~~~~~~~~~ 81 (322)
+||++.... |.||..-.+.|+++| |||+|++++.....+.+.. .+....+++-.... ....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 357776655 789999999999999 6999999998754433321 23344443211111 111122111
Q ss_pred HHHHH---HHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 044384 82 IEKFL---QVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 82 ~~~~~---~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (322)
..... ......++++++.+.. .+||+||+|. .+.+...|+..|+|.+.+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQY 124 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehH
Confidence 11111 1112233344433332 5799999994 4456788899999999876554
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.11 E-value=3.7e-05 Score=69.53 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=63.7
Q ss_pred EEE-EcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeE-EEecCCC-CCCCCCCCCHHHHH
Q 044384 6 VLV-MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIR-LVSIPDG-MEPWEDRNDFGKLI 82 (322)
Q Consensus 6 v~~-~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~-~~~~~~~~~~~~~~ 82 (322)
|++ ....|.||+.+.++++++|.+ ||+|+++++......+... ++. +..+|.. +.......+....+
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~l 71 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKTL 71 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHHH
Confidence 344 345677999999999999999 9999999876522222111 122 2222210 00000011121111
Q ss_pred HHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEcc
Q 044384 83 EKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWS 136 (322)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (322)
..........+.+..+-+.. .+||+||+| +.+.+..+|+.+|||.+.+.-
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 72 RNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred HhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 11000101122222222222 679999999 556667899999999997654
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.73 E-value=0.00051 Score=62.95 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=69.0
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC-CCCCCCCCCCHHHHHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD-GMEPWEDRNDFGKLIE 83 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~-~~~~~~~~~~~~~~~~ 83 (322)
+|++..-...||+.|.++++++|.++||+|+++++....+. ..+. ..++.+..++. ++. ....+. .+.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~~~l~---~~~~~~-~~~ 71 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISSGKLR---RYFDLK-NIK 71 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEeccCcC---CCchHH-HHH
Confidence 36666555569999999999999999999999987643221 1110 12466665542 111 111121 111
Q ss_pred HHHHHchH--HHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccchH
Q 044384 84 KFLQVMPR--KLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVFWSSSA 139 (322)
Q Consensus 84 ~~~~~~~~--~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~~~~~~ 139 (322)
........ ....++++ .+||+||+.--.. .+...|..+++|.+..-....
T Consensus 72 ~~~~~~~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~ 125 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT 125 (352)
T ss_pred HHHHHHHHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC
Confidence 11111111 12234444 6799999965443 245778889999988765543
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.0063 Score=55.64 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=69.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCC-EEEEEeCccchh-hHHhhhccCCCCCCCeEEEecCCCCCCCC-CCCCHHHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYYHK-RVVESLQGKNYLEEQIRLVSIPDGMEPWE-DRNDFGKL 81 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh-~VT~it~~~~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~ 81 (322)
.+++.-..+.||+.|.++++++|.+||+ +|.++.+....+ .+... ..+.+..++-+-.... ........
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~~ 73 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKAP 73 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHHH
Confidence 3666666777999999999999999999 577775543322 11111 2566666653221111 11111111
Q ss_pred HHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccchH
Q 044384 82 IEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVFWSSSA 139 (322)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~~~~~~ 139 (322)
+..+. ......++|++ .+||+||.=.-+. .+...|..+|+|.+.--+...
T Consensus 74 ~~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~ 125 (357)
T COG0707 74 FKLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV 125 (357)
T ss_pred HHHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC
Confidence 11111 12234566766 6799999954443 445677889999988655443
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.14 E-value=0.0079 Score=55.01 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHH
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIE 83 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 83 (322)
++|+++.....||...+..|+++|.++||+|++++....... ... ...+++++.++..-.. .......+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~--~~~-----~~~g~~~~~~~~~~~~---~~~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA--RLV-----PKAGIEFHFIPSGGLR---RKGSLANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh--hcc-----ccCCCcEEEEeccCcC---CCChHHHHH
Confidence 468888776779999999999999999999999987542111 110 0024555555421100 111111111
Q ss_pred HHHHH--chHHHHHHHHHHhccCCCCccEEEecCCc-ch-HHHHHHHcCCceEEE
Q 044384 84 KFLQV--MPRKLEELIEEINSREDEKIDCFIADGNM-GW-SLEVAKKMNVRGGVF 134 (322)
Q Consensus 84 ~~~~~--~~~~~~~ll~~l~~~~~~~~d~vI~D~~~-~~-~~~vA~~l~iP~i~~ 134 (322)
..... .-..+.+++++ .+||+|++.... .+ +..++...++|.+..
T Consensus 72 ~~~~~~~~~~~~~~~ik~------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 72 APFKLLKGVLQARKILKR------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHh------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 11110 11123344444 579999999743 33 334566688998765
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.05 E-value=0.0089 Score=54.35 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=63.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKF 85 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (322)
+++..--..||......+++.|.++||+|++++...... . ... ...++++..++-.-... ......+...
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 71 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLV-----PKAGIPLHTIPVGGLRR---KGSLKKLKAP 71 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hcc-----cccCCceEEEEecCcCC---CChHHHHHHH
Confidence 455555566999999999999999999999998753211 1 110 00235555554210000 1111111111
Q ss_pred HH--HchHHHHHHHHHHhccCCCCccEEEecCCc-c-hHHHHHHHcCCceEEE
Q 044384 86 LQ--VMPRKLEELIEEINSREDEKIDCFIADGNM-G-WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 86 ~~--~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~-~-~~~~vA~~l~iP~i~~ 134 (322)
.. .....+.+++++ .+||+|++..-. . ++..+|...++|.+..
T Consensus 72 ~~~~~~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 72 FKLLKGVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 10 011223444544 579999987543 2 3456678889998864
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.97 E-value=0.014 Score=52.97 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=64.4
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEK 84 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 84 (322)
|++++.--..||+.....|+++|.++||+|++++...... .... ...++++..++-.-. ........+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~~~---~~~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVGGL---RRKGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEeccCc---CCCChHHHHHH
Confidence 6787777777999977899999999999999998643211 0100 002455555542110 01112111111
Q ss_pred HHHH--chHHHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEE
Q 044384 85 FLQV--MPRKLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 85 ~~~~--~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~ 134 (322)
.... ....+.+++++ .+||+|++..... .+..++...++|.+..
T Consensus 72 ~~~~~~~~~~l~~~i~~------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 72 PLKLLKAVFQARRILKK------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1110 11123444554 6799999975443 2334577789998753
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.44 E-value=0.057 Score=50.18 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCH-HHHHHHHHHHchHHHHHHHH
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDF-GKLIEKFLQVMPRKLEELIE 98 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~ 98 (322)
+.+||++|+++||+|+++|........ .+++.+.++..-......... ..+..... .... +...+.
T Consensus 13 ~~~la~~L~~~G~~v~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 79 (396)
T cd03818 13 FRHLAPALAAQGHEVVFLTEPNAAPPP-----------GGVRVVRYRPPRGPTSGTHPYLREFEEAVL-RGQA-VARALL 79 (396)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCCCC-----------CCeeEEEecCCCCCCCCCCccchhHHHHHH-HHHH-HHHHHH
Confidence 788999999999999999986432110 136665554221111111111 11111111 1111 222222
Q ss_pred HHhccCCCCccEEEecCCcchHHHHHHHc-CCceEEEc
Q 044384 99 EINSREDEKIDCFIADGNMGWSLEVAKKM-NVRGGVFW 135 (322)
Q Consensus 99 ~l~~~~~~~~d~vI~D~~~~~~~~vA~~l-~iP~i~~~ 135 (322)
.+...+ .+||+|++-.-+.++..+.+.+ ++|.+.++
T Consensus 80 ~~~~~~-~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 80 ALRAKG-FRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHhcC-CCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 222222 5799999997766677777775 48888754
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.35 E-value=0.09 Score=49.30 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+.+|+++.....|+-.=+..+|+.|+++||+||+++...
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 457888888778887778889999999999999998753
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.13 E-value=0.088 Score=46.58 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=58.1
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchH
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPR 91 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (322)
-|.||+.=++.||++|.++||+|+|++......... .+. ..++.+..+++.... . .-..
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~-~i~-----~~g~~v~~~~~~~~~--------------~-~d~~ 70 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLID-LLL-----SAGFPVYELPDESSR--------------Y-DDAL 70 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHH-HHH-----HcCCeEEEecCCCch--------------h-hhHH
Confidence 477999999999999999999999999875432211 110 135666666643110 0 0011
Q ss_pred HHHHHHHHHhccCCCCccEEEecCCc-chHH-HHHHHcCCceEEEc
Q 044384 92 KLEELIEEINSREDEKIDCFIADGNM-GWSL-EVAKKMNVRGGVFW 135 (322)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~-~~~~-~vA~~l~iP~i~~~ 135 (322)
.+.+++++ .++|+||+|... .... ...+..+.+.+++-
T Consensus 71 ~~~~~l~~------~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iD 110 (279)
T TIGR03590 71 ELINLLEE------EKFDILIVDHYGLDADWEKLIKEFGRKILVID 110 (279)
T ss_pred HHHHHHHh------cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEe
Confidence 24445554 468999999874 2222 33334455555543
No 39
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.95 E-value=0.046 Score=50.31 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=57.0
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHH
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKL 93 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (322)
.|+-..+.+|++.|+++||+|++++........... ....++.+..++..................+ ...+
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 91 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAEYLPKEELWPYLDEF----ADDL 91 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccccCCChhhcchhHHHH----HHHH
Confidence 589999999999999999999999865332111000 0113455555542110000000011111111 1112
Q ss_pred HHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEE
Q 044384 94 EELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~ 134 (322)
.+.++. .. .++|+|++..... .+..+++.+|+|+|..
T Consensus 92 ~~~~~~---~~-~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 92 LRFLRR---EG-GRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHHh---cC-CCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 223332 10 2799999986542 3456788899998753
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.87 E-value=0.032 Score=49.88 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=44.3
Q ss_pred CCeEEEEcC--CCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC
Q 044384 3 SPHVLVMPG--PAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (322)
Q Consensus 3 ~~hv~~~p~--p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 67 (322)
.++++++.. .|-||+.=++.+|+.|++. |.+|++||..+..... ....+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F--------~~~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF--------PGPAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC--------CCcccCceEecCc
Confidence 347888884 5779999999999999986 9999999986543322 1225789999984
No 41
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.82 E-value=0.2 Score=38.83 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=57.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKF 85 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (322)
|+++......| ...+++.|.++||+|++++.......... ..++++..++.... .....+.
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~~k------~~~~~~~-- 62 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSPRK------SPLNYIK-- 62 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCCCC------ccHHHHH--
Confidence 56665444444 56889999999999999999544322211 14677777742211 1111111
Q ss_pred HHHchHHHHHHHHHHhccCCCCccEEEecCCcc-hHH-H-HHHHcC-CceE
Q 044384 86 LQVMPRKLEELIEEINSREDEKIDCFIADGNMG-WSL-E-VAKKMN-VRGG 132 (322)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~~~-~-vA~~l~-iP~i 132 (322)
.. .+..++++ .+||+|.+-...+ +.. . ++...+ +|.|
T Consensus 63 ---~~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i 103 (139)
T PF13477_consen 63 ---YF-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVI 103 (139)
T ss_pred ---HH-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEE
Confidence 11 34555555 6799998887664 332 2 445667 6766
No 42
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.64 E-value=0.013 Score=46.20 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHH
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEELI 97 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (322)
.-+..|+++|+++||+||++++.......... ..++++..++-.-... ........ ..+.+++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPW--PLRLLRFL--------RRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSS--GGGHCCHH--------HHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccch--hhhhHHHH--------HHHHHHH
Confidence 45789999999999999999975443321100 1356666665211110 00000011 1233444
Q ss_pred HHHhccCCCCccEEEecCCcc-hHHHHHH-HcCCceEEEc
Q 044384 98 EEINSREDEKIDCFIADGNMG-WSLEVAK-KMNVRGGVFW 135 (322)
Q Consensus 98 ~~l~~~~~~~~d~vI~D~~~~-~~~~vA~-~l~iP~i~~~ 135 (322)
.. .. .++|+|.+-.... +...+++ ..++|.|.-.
T Consensus 68 ~~-~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 AA-RR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HH-CT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hh-hc---cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 11 11 5799999887432 3334555 7889987553
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.41 E-value=0.18 Score=45.16 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.|+-.....++++|+++||+|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 58999999999999999999999988643
No 44
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=95.15 E-value=0.17 Score=46.97 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
++|++..--..||+.|. +++++|.++|++|+++...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~g 41 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVA 41 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEc
Confidence 46777666667999999 9999999999999999865
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.02 E-value=0.12 Score=49.30 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCC-----CcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 2 SSPHVLVMPGPA-----QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 2 ~~~hv~~~p~p~-----~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++||+++..+. .|=-+-+..+++.|.++||+|+++++..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467888884321 2444677899999999999999999754
No 46
>PRK10307 putative glycosyl transferase; Provisional
Probab=94.84 E-value=0.37 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~ 41 (322)
...|+++|.++||+||++|+.+
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 47
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=94.82 E-value=0.53 Score=42.73 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=62.0
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccch-hhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHH
Q 044384 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKL 93 (322)
Q Consensus 15 gH~~p~~~la~~La~rGh~VT~it~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (322)
-|..-+.++.++|-++||+|.+.+-.... ..+... .++.+..+... . .....-....... .-.+
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~--------yg~~y~~iG~~-----g-~~~~~Kl~~~~~R-~~~l 75 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL--------YGIDYIVIGKH-----G-DSLYGKLLESIER-QYKL 75 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH--------cCCCeEEEcCC-----C-CCHHHHHHHHHHH-HHHH
Confidence 49999999999999999999977654322 222222 25666655421 1 1121111111111 1112
Q ss_pred HHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHH
Q 044384 94 EELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAA 140 (322)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (322)
.+++++ .+||++|+- ....+..+|.-+|+|.|.|.=+.-+
T Consensus 76 ~~~~~~------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 76 LKLIKK------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHHHHh------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchh
Confidence 233333 579999963 2356777999999999999766433
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.65 E-value=0.39 Score=43.70 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=30.4
Q ss_pred eEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p-~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++++.+| ..|.-.....+++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 45666654 45889999999999999999999998753
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.30 E-value=0.51 Score=42.52 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.3
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.|+-.....+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 59999999999999999999999987643
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=94.11 E-value=0.62 Score=41.40 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=32.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
|+++.....|+...+..++++|.++||+|++++.....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 56666567899999999999999999999999987544
No 51
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=94.11 E-value=0.19 Score=46.38 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=31.3
Q ss_pred CCeEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 3 SPHVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 3 ~~hv~~~p~p-~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.++++++... |.||..+..+|+++|.++||+|+++...
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 4578888865 5599999999999999999987776553
No 52
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.95 E-value=0.66 Score=37.68 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=52.7
Q ss_pred hCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHhccCCCCc
Q 044384 29 KHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEELIEEINSREDEKI 108 (322)
Q Consensus 29 ~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (322)
++||+|++++........ ++++.+.+...-............++..... ...+.+.+.+|.+++ -.|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHcC-CCC
Confidence 479999999954332211 2566655532111111111111111111111 223445555565544 678
Q ss_pred cEEEecCCcchHHHHHHHc-CCceEEEc
Q 044384 109 DCFIADGNMGWSLEVAKKM-NVRGGVFW 135 (322)
Q Consensus 109 d~vI~D~~~~~~~~vA~~l-~iP~i~~~ 135 (322)
|+||.-.-+..++-+-+.+ ++|.++++
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999998888888889988 89988774
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.75 E-value=0.45 Score=41.50 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=64.5
Q ss_pred eEEEEcC----CCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHH
Q 044384 5 HVLVMPG----PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGK 80 (322)
Q Consensus 5 hv~~~p~----p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 80 (322)
||+++.- -|.||+.=++.||++|.++|..+++++......-+...+ ..+.+..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~---------------- 58 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLE---------------- 58 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhcccee----------------
Confidence 5677653 467999999999999999999999999865433221111 0011000
Q ss_pred HHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcc---hHHHHHHHcCCceEEEccchHHHH
Q 044384 81 LIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMG---WSLEVAKKMNVRGGVFWSSSAASV 142 (322)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~---~~~~vA~~l~iP~i~~~~~~~~~~ 142 (322)
.+ .. ..+++ .+||++|+|...- ....+..+.+.+.+.|-.-....+
T Consensus 59 -----~~-~~----n~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~ 107 (318)
T COG3980 59 -----GR-GN----NLIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSF 107 (318)
T ss_pred -----ee-cc----ccccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccch
Confidence 00 00 13333 6899999998853 334678889999999877655444
No 54
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.48 E-value=0.31 Score=43.75 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=26.1
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.|+.+.+..|+++|+++||+|+++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~ 41 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGP 41 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999999999999999999999999864
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.20 E-value=0.54 Score=42.19 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.8
Q ss_pred cCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 10 PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 10 p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|....|+-.....+++.|+++||+|+++++..
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~ 41 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSY 41 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34467999999999999999999999998754
No 56
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.09 E-value=0.7 Score=42.52 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+|++..---.||+.|.. ++++|.++++++.++...
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 57777666679999998 999999988888877643
No 57
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=91.89 E-value=3.4 Score=37.93 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.6
Q ss_pred eEEEEc-CCC-CcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMP-GPA-QGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p-~p~-~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+|+++. ... .|=-.-+..||++|+++||+||++++.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 355443 322 355567799999999999999999975
No 58
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=91.87 E-value=2.3 Score=44.33 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=64.3
Q ss_pred CcChHHHHHHHHHHHhCC--CEEEEEeCccchhhHHhhhccC---------------CCCCCCeEEEecCCCCCCC-CCC
Q 044384 14 QGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHKRVVESLQGK---------------NYLEEQIRLVSIPDGMEPW-EDR 75 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rG--h~VT~it~~~~~~~~~~~~~~~---------------~~~~~~i~~~~i~~~~~~~-~~~ 75 (322)
.|+..=.++||++|+++| |+|+++|-..........+... ....++++++.+|.+-... -..
T Consensus 195 GGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K 274 (1050)
T TIGR02468 195 GGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK 274 (1050)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCH
Confidence 467788899999999998 8999998753321110000000 0012367777777553321 112
Q ss_pred CCHHHHHHHHHHHchHHHHH----HHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEE
Q 044384 76 NDFGKLIEKFLQVMPRKLEE----LIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~----ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~ 134 (322)
..+..++..+.+.+...+.+ +.+++.......||+|-+-.... .+..+++.+|||.|..
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T 339 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLT 339 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEE
Confidence 22333333333322222221 12222111112489999987653 4457899999997643
No 59
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=91.83 E-value=1.7 Score=38.81 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
..|--.-...|++.|.++||+|++++...
T Consensus 18 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 18 YGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cCcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 34667889999999999999999999754
No 60
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.81 E-value=2.3 Score=33.65 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
..|=-.-+..|+++|+++||+||++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 44777889999999999999999998754
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.77 E-value=2.6 Score=37.92 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=56.0
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHH
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKL 93 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (322)
.|--.....++++|+++||+|++++........... .++++..++-.. ......+.. ...+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~-----~~~l 70 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEA--------EGSRHIKLPFIS------KNPLRILLN-----VARL 70 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh--------cCCeEEEccccc------cchhhhHHH-----HHHH
Confidence 577888999999999999999999875432211111 245554443210 001111111 1123
Q ss_pred HHHHHHHhccCCCCccEEEecCCc-chHH-HHHHHcCCceEEEcc
Q 044384 94 EELIEEINSREDEKIDCFIADGNM-GWSL-EVAKKMNVRGGVFWS 136 (322)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~-~~~~-~vA~~l~iP~i~~~~ 136 (322)
..++++ .++|+|++.... .|.. .++..+++|.+....
T Consensus 71 ~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 71 RRLIRE------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHHHH------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 344444 579999987654 3443 456678999876443
No 62
>PLN00142 sucrose synthase
Probab=91.62 E-value=1.6 Score=44.17 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCEEE----EEeCccchhhHHhhhcc---CCCCCCCeEEEecCCCCCCCC-----CCCCHHHHHHHHHHHc
Q 044384 22 EFSQCLAKHGFRVT----FVNTDYYHKRVVESLQG---KNYLEEQIRLVSIPDGMEPWE-----DRNDFGKLIEKFLQVM 89 (322)
Q Consensus 22 ~la~~La~rGh~VT----~it~~~~~~~~~~~~~~---~~~~~~~i~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~ 89 (322)
+++++|+++||+|+ ++|---.... .+.++. .....++.+++.+|.+-..+. ...++..++..+..
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~-~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~-- 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAK-GTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAE-- 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCcc-CCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHH--
Confidence 46688889999775 7665221110 011100 001123567777775432211 11122223333221
Q ss_pred hHHHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEEc
Q 044384 90 PRKLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~~ 135 (322)
...+.+.++. . .+||+|.+-+... .+..+|+++|||.+...
T Consensus 396 -~~~~~~~~~~---~-~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 396 -DAASEILAEL---Q-GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred -HHHHHHHHhc---C-CCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 1122222321 1 4699999997764 34589999999988543
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.54 E-value=1.5 Score=40.72 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=56.9
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHH
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRK 92 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (322)
..|.-.-...|+++|+++||+||++++....... ... ....++++..++..--.. .........+.......
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~-~~~----~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 90 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQP-PVV----EVAPGVRVRNVVAGPYEG---LDKEDLPTQLCAFTGGV 90 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCC-Ccc----ccCCCcEEEEecCCCccc---CCHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999975321110 000 011356665553211000 00111111110001111
Q ss_pred HHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEEc
Q 044384 93 LEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~~ 135 (322)
+..+++.. . .++|+|-+-.+.. ++..+++.+++|.|...
T Consensus 91 ~~~~~~~~---~-~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~ 131 (405)
T TIGR03449 91 LRAEARHE---P-GYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTA 131 (405)
T ss_pred HHHHhhcc---C-CCCCeEEechHHHHHHHHHHHHhcCCCEEEec
Confidence 22333321 1 3689987765432 34456777899987644
No 64
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.23 E-value=2.9 Score=42.33 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=59.1
Q ss_pred CcChHHHHHHHHH--------HHhCCC----EEEEEeCccchhhHHhhhccC---CCCCCCeEEEecCCCCCCCC-----
Q 044384 14 QGHVIPLLEFSQC--------LAKHGF----RVTFVNTDYYHKRVVESLQGK---NYLEEQIRLVSIPDGMEPWE----- 73 (322)
Q Consensus 14 ~gH~~p~~~la~~--------La~rGh----~VT~it~~~~~~~~~~~~~~~---~~~~~~i~~~~i~~~~~~~~----- 73 (322)
.|+..=.+++|++ |+++|| +|+++|-...... ...++.. .....+++++.+|.+-....
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~-~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~ 357 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE-GTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNW 357 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc-ccccccccccccCCCceEEEEecCCCCcccccccc
Confidence 5777777878886 578999 7778886432110 0000000 01124677777775432221
Q ss_pred -CCCCHHHHHHHHHHHchHHHHH-HHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEE
Q 044384 74 -DRNDFGKLIEKFLQVMPRKLEE-LIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~ 134 (322)
...++..++..+. ..+.+ +..+. + .+||+|++-.... .+..+|+++|||.+..
T Consensus 358 i~k~~l~p~l~~f~----~~~~~~~~~~~---~-~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 358 ISRFEIWPYLETFA----EDAEKEILAEL---Q-GKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred cCHHHHHHHHHHHH----HHHHHHHHHhc---C-CCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 1112222333222 12222 22221 1 4699999987653 3457899999996643
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=91.06 E-value=2.5 Score=39.21 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=55.1
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHH
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKL 93 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (322)
.|--.-...|++.|+++||+|+++++.......... ...++++..+|........ ....... ....+
T Consensus 14 GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~i~v~~~p~~~~~~~~--~~~~~~~-----~~~~l 80 (398)
T cd03796 14 GGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY------LTNGLKVYYLPFVVFYNQS--TLPTFFG-----TFPLL 80 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc------ccCceeEEEecceeccCCc--cccchhh-----hHHHH
Confidence 466778999999999999999999975321100000 0124555555531100000 0000110 11223
Q ss_pred HHHHHHHhccCCCCccEEEecCCcc-h---HHHHHHHcCCceEEE
Q 044384 94 EELIEEINSREDEKIDCFIADGNMG-W---SLEVAKKMNVRGGVF 134 (322)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~~-~---~~~vA~~l~iP~i~~ 134 (322)
.+.+++ .+||+|-+-.... + +..+++.+++|.|..
T Consensus 81 ~~~~~~------~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 81 RNILIR------ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHHHh------cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 344443 5799888775432 2 345678889998753
No 66
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=90.56 E-value=2.2 Score=40.23 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred cChHHHHHHHHHHHhCCC--EEEEEeCccchhhHHhhhc-cCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchH
Q 044384 15 GHVIPLLEFSQCLAKHGF--RVTFVNTDYYHKRVVESLQ-GKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPR 91 (322)
Q Consensus 15 gH~~p~~~la~~La~rGh--~VT~it~~~~~~~~~~~~~-~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (322)
|=-.-+..|+++|+++|| +|+++|...........+. .......++++..++..-...........++. .+..
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~----~~~~ 102 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLD----ELAD 102 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHH----HHHH
Confidence 455678899999999997 9999996421100000000 00000135666655532110000011111111 1222
Q ss_pred HHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEE
Q 044384 92 KLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVF 134 (322)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~ 134 (322)
.+.+++++. . .+||+|-+-.+.. .+..+++.+++|.|..
T Consensus 103 ~l~~~~~~~---~-~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t 143 (439)
T TIGR02472 103 NLLQHLRQQ---G-HLPDLIHAHYADAGYVGARLSRLLGVPLIFT 143 (439)
T ss_pred HHHHHHHHc---C-CCCCEEEEcchhHHHHHHHHHHHhCCCEEEe
Confidence 333444431 1 3699999976432 2345677789998653
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=90.35 E-value=2.1 Score=37.72 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
..|....+..++++|+++||+|++++....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 467778899999999999999999988654
No 68
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.98 E-value=4 Score=36.74 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
...|=-.-...++++|.++||+|++++....
T Consensus 13 ~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 13 KYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4456677888999999999999999997643
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=89.70 E-value=2.8 Score=37.07 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.5
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.|+...+..+++.|.+.||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~ 42 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDG 42 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCC
Confidence 69999999999999999999999998643
No 70
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.61 E-value=8.4 Score=30.05 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
|+++++++...++-+|-.-..-++..|.++|++|+++-..-..+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 8899999999999999999999999999999999998775444433
No 71
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.63 E-value=4 Score=33.63 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=24.7
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
..||-.....+++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 67999999999999999999999988
No 72
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.56 E-value=6.3 Score=35.28 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
..|.-.-...++++|.++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 568999999999999999999999998654
No 73
>PLN02275 transferase, transferring glycosyl groups
Probab=88.20 E-value=18 Score=33.14 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=38.6
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCC-EEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh-~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 67 (322)
.++.++..+..|.---|..++.+|+++|| +||+++........ ... ...+++...++.
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~-~~~-----~~~~v~v~r~~~ 63 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIP-ALL-----NHPSIHIHLMVQ 63 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCH-HHh-----cCCcEEEEECCC
Confidence 35566666788888899999999999986 79999864432111 110 113577777764
No 74
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=86.32 E-value=7.5 Score=34.90 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
...|.-.-...++++|+++||+||+++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 4569999999999999999999999997643
No 75
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=83.75 E-value=8.8 Score=34.00 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4799999999999999999999999986543
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=83.37 E-value=7.5 Score=36.40 Aligned_cols=98 Identities=6% Similarity=-0.022 Sum_probs=56.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCE--EEEEeCccchhhHH-hhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFR--VTFVNTDYYHKRVV-ESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLI 82 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~--VT~it~~~~~~~~~-~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 82 (322)
++-+-..+-|.+.-..+|+++|.+++++ |.+.++........ ... ..++....+|-..+
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~------~~~~~~~~~P~d~~------------ 113 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF------GDDVEHRYLPYDLP------------ 113 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc------CCCceEEEecCCcH------------
Confidence 4445556779999999999999988744 33322222222221 111 12344444542111
Q ss_pred HHHHHHchHHHHHHHHHHhccCCCCccEEEecC--CcchHHHHHHHcCCceEEEc
Q 044384 83 EKFLQVMPRKLEELIEEINSREDEKIDCFIADG--NMGWSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~--~~~~~~~vA~~l~iP~i~~~ 135 (322)
..+..++++ .+||++++-. +++.....+++.|+|.+.+.
T Consensus 114 --------~~~~~~l~~------~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 --------GAVRRFLRF------WRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred --------HHHHHHHHh------hCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 234566666 5689887542 23444566788999998764
No 77
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.83 E-value=27 Score=31.23 Aligned_cols=106 Identities=22% Similarity=0.164 Sum_probs=63.7
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCccc-hhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHH-HHHHHHHHHchH
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY-HKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFG-KLIEKFLQVMPR 91 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~~-~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (322)
.-|..-+..+..+|.++||+|-+-+-... ...+...+ ++.+..+... ....+. .......+ .-
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y--------gf~~~~Igk~-----g~~tl~~Kl~~~~eR--~~ 74 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY--------GFPYKSIGKH-----GGVTLKEKLLESAER--VY 74 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh--------CCCeEeeccc-----CCccHHHHHHHHHHH--HH
Confidence 45777789999999999999986554322 22232332 4555544321 111222 11211111 11
Q ss_pred HHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccchHHH
Q 044384 92 KLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSSAAS 141 (322)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~ 141 (322)
.+.++..+ .++|+.+. ...+.+..+|.-+|+|.|+|.-+.-+.
T Consensus 75 ~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 75 KLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred HHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 23344444 67999999 667788899999999999987665443
No 78
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.62 E-value=29 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+..|.++.-+|.|-....+.++.+.+.+|++|.++-.-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 345789999999999999999999999999999988553
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=78.34 E-value=36 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=26.9
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+...|+-.....|+++|.++||+|.+++...
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 3447899999999999999999999998754
No 80
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=78.02 E-value=3.5 Score=37.11 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.2
Q ss_pred eEEEEcCC-C-CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 5 HVLVMPGP-A-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 5 hv~~~p~p-~-~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
||+++... + .|+-.-...++++|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666543 3 69999999999999999999999987643
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=76.87 E-value=34 Score=31.69 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCeEEEEcC-CCCcChHHHHHHHHHHHhCC---CEEEEEe
Q 044384 3 SPHVLVMPG-PAQGHVIPLLEFSQCLAKHG---FRVTFVN 38 (322)
Q Consensus 3 ~~hv~~~p~-p~~gH~~p~~~la~~La~rG---h~VT~it 38 (322)
.++|++++. -|.||.-...+|.++|.++| .+|.++-
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D 44 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHD 44 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEee
Confidence 357888885 46799999999999999876 4566553
No 82
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=76.49 E-value=15 Score=34.24 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=33.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++=--||.|--.-+++++..||++| .|-+++.+....++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 34445799999999999999999999 99999998665554
No 83
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=76.00 E-value=31 Score=33.13 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=36.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
+++.-.||.|-.+-.++++.+.+++|..+.+++.+.....+..
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 5666788999999999999999999999999999876655543
No 84
>PLN02846 digalactosyldiacylglycerol synthase
Probab=75.12 E-value=4.8 Score=38.29 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCeEEEEcC---CCC-cChHHHHHHHHHHHhCC-CEEEEEeCc
Q 044384 3 SPHVLVMPG---PAQ-GHVIPLLEFSQCLAKHG-FRVTFVNTD 40 (322)
Q Consensus 3 ~~hv~~~p~---p~~-gH~~p~~~la~~La~rG-h~VT~it~~ 40 (322)
++||++|+- |-. |=..-.+.++..|+++| |+||++.+.
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~ 46 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPW 46 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecC
Confidence 679999984 333 66577788888999999 899999885
No 85
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=75.10 E-value=3.5 Score=37.00 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
..|+-.....|++.|.++||+|++++...
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 36999999999999999999999998643
No 86
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=75.06 E-value=32 Score=25.67 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.9
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
++++.+.++-.|.....-++..|.++|++|+++-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 478888899999999999999999999999887654
No 87
>PRK00654 glgA glycogen synthase; Provisional
Probab=75.03 E-value=4.7 Score=38.41 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=24.3
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.|.-..+..|+++|+++||+|+++++.
T Consensus 17 GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 17 GGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 477788899999999999999999975
No 88
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=74.54 E-value=13 Score=30.91 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCccE-EEecCCc-chHHHHHHHcCCceEEEccchH
Q 044384 106 EKIDC-FIADGNM-GWSLEVAKKMNVRGGVFWSSSA 139 (322)
Q Consensus 106 ~~~d~-vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~ 139 (322)
..||+ ||.|.-- ..+..-|.++|||.|++.-+.+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 45785 5556554 4677889999999999976653
No 89
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=73.75 E-value=30 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=22.1
Q ss_pred cCCCCcChHHHHHHHHHH-HhCC-CEEEEEeCcc
Q 044384 10 PGPAQGHVIPLLEFSQCL-AKHG-FRVTFVNTDY 41 (322)
Q Consensus 10 p~p~~gH~~p~~~la~~L-a~rG-h~VT~it~~~ 41 (322)
-..+.||..=|+.|.+.+ -++. ++.-+++...
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 345789999999999999 4444 4444444433
No 90
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=73.50 E-value=46 Score=26.71 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=30.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
-|.++..+|.|-......++.+.+.+|++|.++-.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46788889999999999999999999999999543
No 91
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=73.45 E-value=17 Score=33.18 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=25.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.+.|=-..+..+++.|.+.||+|+++++..
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 456778888899999999999999998754
No 92
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.01 E-value=23 Score=30.44 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=25.2
Q ss_pred Ccc-EEEecCCc-chHHHHHHHcCCceEEEccchH
Q 044384 107 KID-CFIADGNM-GWSLEVAKKMNVRGGVFWSSSA 139 (322)
Q Consensus 107 ~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~ 139 (322)
-|| ++|+|.-. .-+..=|.++|||.|++.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 377 56778776 3677889999999999876544
No 93
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=72.36 E-value=36 Score=29.78 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|.+++|+++-+||...-. +...+|.+.|+++.++...
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 677899999999987654 5578888899999988754
No 94
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.29 E-value=8.4 Score=33.52 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=37.7
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
..++++-.||.|-..-..+++.+|..+|+.|+|++.+.....+..
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 358888889988888899999999999999999998766655544
No 95
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=71.98 E-value=55 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=30.5
Q ss_pred CCeEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 3 SPHVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 3 ~~hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
+++++.+.. ++-|-..-...||..|+++|++|.+|=....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345555553 4568999999999999999999998865433
No 96
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=71.88 E-value=23 Score=32.68 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.8
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhC-C--CEEEEEeC
Q 044384 7 LVMPGPAQGHVIPLLEFSQCLAKH-G--FRVTFVNT 39 (322)
Q Consensus 7 ~~~p~p~~gH~~p~~~la~~La~r-G--h~VT~it~ 39 (322)
++-...|.||.-...+|.++|.++ | .+|+++-.
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~ 38 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDL 38 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEeh
Confidence 444567889999999999999865 4 45666543
No 97
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=71.67 E-value=6.1 Score=35.21 Aligned_cols=30 Identities=40% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
..|+......+++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 469999999999999999999999988643
No 98
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.16 E-value=37 Score=29.61 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~ 42 (322)
-..|+++|.++||+|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 67899999999999998766543
No 99
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=71.14 E-value=66 Score=29.74 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=33.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++.--||.|-..-+++++..++.+|..|-+++.+.....+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45555789999999999999999999999999887544443
No 100
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=71.09 E-value=44 Score=26.52 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=24.1
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEE
Q 044384 11 GPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~rGh~VT~i 37 (322)
-++.|.......|++.|+++|.+|-++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 356799999999999999999999886
No 101
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=70.68 E-value=42 Score=30.57 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=58.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIE 83 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r-Gh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 83 (322)
+|+++ .....|+.-+.++.++|.++ +.++.++.|...........+. -+|.. .++-.+ +...........
T Consensus 2 ~i~~~-~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-----~~i~~-~~~~~~--~~~~~~~~~~~~ 72 (365)
T TIGR00236 2 KVSIV-LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-----FHLPP-DYDLNI--MSPGQTLGEITS 72 (365)
T ss_pred eEEEE-EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCC-Ceeeec--CCCCCCHHHHHH
Confidence 35543 35678999999999999986 5676676664333222111100 01110 000001 001111111111
Q ss_pred HHHHHchHHHHHHHHHHhccCCCCccEEEec--CCc-chHHHHHHHcCCceEEE
Q 044384 84 KFLQVMPRKLEELIEEINSREDEKIDCFIAD--GNM-GWSLEVAKKMNVRGGVF 134 (322)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D--~~~-~~~~~vA~~l~iP~i~~ 134 (322)
. +-..+.+++++ .+||+|++= ... .++..+|.++|+|.+.+
T Consensus 73 ~----~~~~l~~~l~~------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 73 N----MLEGLEELLLE------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred H----HHHHHHHHHHH------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 1 11335566666 578988884 443 34567889999998854
No 102
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=70.53 E-value=16 Score=33.82 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.6
Q ss_pred EcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 9 MPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 9 ~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+|+|. .|.-+=+-+++++|+++ |+||++|...
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 56664 58899999999999776 8999998764
No 103
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=70.30 E-value=50 Score=28.21 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=30.3
Q ss_pred eEEEEcCC--CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGP--AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p--~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+++++++. |-|.....-.|+.+||.+|+.|.+|-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 36777753 5599999999999999999999998765
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=70.08 E-value=53 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=23.8
Q ss_pred cChHHHHHHHHHHHhC--CCEEEEEeCccch
Q 044384 15 GHVIPLLEFSQCLAKH--GFRVTFVNTDYYH 43 (322)
Q Consensus 15 gH~~p~~~la~~La~r--Gh~VT~it~~~~~ 43 (322)
|==..+...++.|.++ ||+||++|+....
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 5667788888999887 8999999997544
No 105
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=69.39 E-value=76 Score=28.83 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=37.1
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~ 46 (322)
.+|+++-.-+.|-++-..++.+.|.++ +.+||+++.......+
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 479999998999999999999999986 7999999987665443
No 106
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=69.13 E-value=26 Score=31.26 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=35.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~ 46 (322)
+++++-..+.|-+.-..++.+.|.++ +.+||+++.......+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~ 44 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV 44 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh
Confidence 47888888889999999999999986 8999999987665444
No 107
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=68.71 E-value=15 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCCCcChHHHHHHHHHHHhC-CCEEEEEeCc
Q 044384 11 GPAQGHVIPLLEFSQCLAKH-GFRVTFVNTD 40 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~r-Gh~VT~it~~ 40 (322)
......+.=+.++.++|.++ |+++.++.|.
T Consensus 6 ~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg 36 (363)
T cd03786 6 TGTRPEYIKLAPLIRALKKDPGFELVLVVTG 36 (363)
T ss_pred EecCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 34567777788889999987 8999987764
No 108
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.53 E-value=51 Score=31.35 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=34.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++.--||.|-..-+++++..++++|..|.+++.......+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45566789999999999999999999999999987655444
No 109
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=68.52 E-value=8.3 Score=33.86 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
+..|+...+..+++.|.++||+|++++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 3679999999999999999999999988643
No 110
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=66.97 E-value=48 Score=24.37 Aligned_cols=83 Identities=18% Similarity=0.091 Sum_probs=49.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHH
Q 044384 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLE 94 (322)
Q Consensus 15 gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (322)
++-.-+.++++.|.+.|+++- .+....+.+.. .++....+... . ...+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~---------~gi~~~~v~~~-~-----------------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQE---------AGIPVEVVNKV-S-----------------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHH---------cCCeEEEEeec-C-----------------CCchhHH
Confidence 455678899999999999883 45555444433 24443332110 0 0123344
Q ss_pred HHHHHHhccCCCCccEEEecCCc-------chHHHHHHHcCCceE
Q 044384 95 ELIEEINSREDEKIDCFIADGNM-------GWSLEVAKKMNVRGG 132 (322)
Q Consensus 95 ~ll~~l~~~~~~~~d~vI~D~~~-------~~~~~vA~~l~iP~i 132 (322)
+++++ .++|+||.-.-- .+....|-.+|||.+
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 55554 679999984321 234467999999987
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.94 E-value=73 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+.++++.+.++-.|-+...-++..|..+|++|+++...-..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 45899999999999999999999999999999987654333333
No 112
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=66.51 E-value=8.1 Score=31.78 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+|+++...|+ . -..++++...|||+||-|+-.+
T Consensus 2 KIaiIgAsG~--~--Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIGASGK--A--GSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEEecCch--h--HHHHHHHHHhCCCeeEEEEeCh
Confidence 4777764443 2 2367899999999999988643
No 113
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.27 E-value=61 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=27.8
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
-+.|-..-.++++..+...||+||+++|....+
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~r 69 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVR 69 (235)
T ss_pred CCccHHHHHHHHHHHHHhCCceEEEEEechhHH
Confidence 356888888999999999999999999986543
No 114
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=65.92 E-value=14 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
||++.-..+ ++..-...+.++|.++|++|+++.++.-.+.+
T Consensus 2 ~i~l~vtGs-~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGS-IAAYKAPDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SS-GGGGGHHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECH-HHHHHHHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 566555544 44444999999999999999999987554433
No 115
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=65.88 E-value=43 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=33.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La-~rGh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.+.++..++ ++|+.|-+++.+-....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 44555789999999999999998 679999999987554444
No 116
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=65.77 E-value=14 Score=28.00 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=24.9
Q ss_pred eEEEEcCCCCc---ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQG---HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~g---H~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++|+--|-.+ .-.....|+++-.+|||+|.++....
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 46666665544 44567889999999999999998754
No 117
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=65.50 E-value=11 Score=36.00 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=28.7
Q ss_pred eEEEEcC---C---CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPG---P---AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~---p---~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
||+++.. | ..|=-..+-.|+++|+++||+|+++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4666552 2 34666788999999999999999999853
No 118
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=65.26 E-value=40 Score=29.21 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
|---+..|++.|. .+++||++.+..+++
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qS 39 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQS 39 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCc
Confidence 3344677888888 999999999876553
No 119
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=64.79 E-value=62 Score=28.37 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
--+..|++.|.+.| +|+++.+..+.+
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 45778889998887 899888765543
No 120
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=64.20 E-value=57 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 19 PLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
-+..|.++|.+ +|+|+++.+.....
T Consensus 15 Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 15 GIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred HHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 36678888864 57999998875543
No 121
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=63.51 E-value=63 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 19 PLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
-+..|.++|.+.| +|+++.+..+..
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 3677888898888 899998876543
No 122
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=63.24 E-value=48 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
--+..|+++|.+.| +|+++.+..+.
T Consensus 19 ~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 19 EGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred HHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 34677888888878 79988886554
No 123
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=62.76 E-value=51 Score=23.22 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
++++++.|++.|++|- .|....+.+
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L 26 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFL 26 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHH
Confidence 4689999999999883 444444444
No 124
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=62.71 E-value=57 Score=29.20 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=35.2
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~ 44 (322)
||+++-..+.|-+.-..++.+.|.++ +.+||+++......
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 68999999999999999999999985 89999999865543
No 125
>PRK14099 glycogen synthase; Provisional
Probab=62.50 E-value=14 Score=35.48 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.0
Q ss_pred CCCCeEEEEcC---C---CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMPG---P---AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p~---p---~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|.++||+++.. | ..|=-..+-.|.++|+++||+|.++++..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 78889888763 2 34777889999999999999999999853
No 126
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=62.29 E-value=75 Score=26.80 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+.++++...++-.|-+...=++..|..+|++|+++-..-..+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 45899999999999999999999999999999998775444433
No 127
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=61.92 E-value=8.9 Score=33.11 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.1
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 15 GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 15 gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|=-.....|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 566778899999999999999999864
No 128
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=61.90 E-value=1.4e+02 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCCCeEEEEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 1 MSSPHVLVMPG-PAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 1 m~~~hv~~~p~-p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|...++++.-. .+.|-......|++.|+++|++|..+-+.
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 44445665543 45689999999999999999999887653
No 129
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=61.66 E-value=63 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=17.3
Q ss_pred HHHHHHHHHhC---CCEEEEEeCccchh
Q 044384 20 LLEFSQCLAKH---GFRVTFVNTDYYHK 44 (322)
Q Consensus 20 ~~~la~~La~r---Gh~VT~it~~~~~~ 44 (322)
+..|++.|.+. |++|+++.+.....
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 55677777663 47999998875543
No 130
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=61.62 E-value=17 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~i 37 (322)
-++++......|..-+.++|+.|+++|+.|..+
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 466777777899999999999999999888754
No 131
>PRK08506 replicative DNA helicase; Provisional
Probab=61.56 E-value=49 Score=31.70 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.+.++...+.+|+.|-+++.+-....+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 44455789999999999999999999999999987554444
No 132
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=60.99 E-value=8.6 Score=32.78 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|+-.|.+++.+|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67789999999999999999998873
No 133
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=60.50 E-value=1.3e+02 Score=27.19 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=35.9
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~ 46 (322)
+|+++-..+.|-++-..++.+.|.++ +.+||+++.+.....+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 58999989999999999999999984 8999999986655444
No 134
>PRK12342 hypothetical protein; Provisional
Probab=60.14 E-value=1.2e+02 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=24.1
Q ss_pred CccEEEecCCcc-h-----HHHHHHHcCCceEEEccc
Q 044384 107 KIDCFIADGNMG-W-----SLEVAKKMNVRGGVFWSS 137 (322)
Q Consensus 107 ~~d~vI~D~~~~-~-----~~~vA~~l~iP~i~~~~~ 137 (322)
.||+|++-.-.. . +..+|+.||+|.+.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 499999975542 2 568999999999987654
No 135
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=59.32 E-value=10 Score=36.07 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.8
Q ss_pred CcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 14 ~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.|=-..+..|+++|+++||+|+++++..
T Consensus 16 GGl~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 16 GGLGDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4666777899999999999999999753
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=59.23 E-value=1.2e+02 Score=27.28 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=63.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhHHhhhccCCCCCCCeE-EEecCCCCCCCCCCCCHHHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVVESLQGKNYLEEQIR-LVSIPDGMEPWEDRNDFGKL 81 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~ 81 (322)
+|+++-..+.|-+.-...+.+.|.++ +.+||+++.......++.. +.|+ ++.++..... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~----~~---- 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK----AG---- 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc----ch----
Confidence 47788888899999999999999985 7999999987665444322 3443 2333211000 00
Q ss_pred HHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCce-EEE
Q 044384 82 IEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRG-GVF 134 (322)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~-i~~ 134 (322)
...+. ...++++++.. .+||++|.=.....+..++...|+|. +++
T Consensus 65 ~~~~~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 65 ERKLA-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred HHHHH-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 00010 11233444433 57998885433344567788889885 444
No 137
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=58.92 E-value=60 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++++--.||.|-..-.+.++..|.++|+.|-=+.++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 47888889999999999999999999999987665543
No 138
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.47 E-value=25 Score=26.13 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=32.3
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
++++...+..-|-.-+.-++..|.++||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 678888999999999999999999999999988554
No 139
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=58.08 E-value=82 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=19.9
Q ss_pred CCccEEEecCCc--chHHHHHHHcCCceEE
Q 044384 106 EKIDCFIADGNM--GWSLEVAKKMNVRGGV 133 (322)
Q Consensus 106 ~~~d~vI~D~~~--~~~~~vA~~l~iP~i~ 133 (322)
.++|+|.+-... ..+..+++++|+|.+.
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~ 110 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVV 110 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEE
Confidence 578988874332 2345678899999886
No 140
>PRK08760 replicative DNA helicase; Provisional
Probab=57.78 E-value=49 Score=31.75 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=32.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~-rGh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.+.+|...+. .|+.|-+++.+-....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 444557899999999999999985 58999999887554443
No 141
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=56.89 E-value=12 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~ 41 (322)
-..||+++..||++||+++.+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 3678999999999999999863
No 142
>PRK07952 DNA replication protein DnaC; Validated
Probab=56.79 E-value=53 Score=28.37 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+++.-.+|.|-..-..+++++|..+|+.|.+++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 466666778888888888888888888888877653
No 143
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=56.44 E-value=1.5e+02 Score=26.70 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=54.6
Q ss_pred EEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHH
Q 044384 8 VMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFL 86 (322)
Q Consensus 8 ~~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (322)
+++... .|.-.-+..|++.|.++||++++++..... ....... ..++++..++... ...+ ..+
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~-----~~~i~~~~~~~~~-----~~~~----~~~- 70 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQ-----RPDVAFYALHKQP-----GKDV----AVY- 70 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHH-----hcCceEEEeCCCC-----CCCh----HHH-
Confidence 344443 577799999999999999999988753221 1111110 0256666654210 0111 111
Q ss_pred HHchHHHHHHHHHHhccCCCCccEEEecCCcc-hHHHHHHHcCCceE
Q 044384 87 QVMPRKLEELIEEINSREDEKIDCFIADGNMG-WSLEVAKKMNVRGG 132 (322)
Q Consensus 87 ~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~~~~vA~~l~iP~i 132 (322)
..+.+++++ .+||+|-+-.... ++..++...++|..
T Consensus 71 ----~~l~~~l~~------~~~Divh~~~~~~~~~~~~~~~~~~~~~ 107 (374)
T TIGR03088 71 ----PQLYRLLRQ------LRPDIVHTRNLAALEAQLPAALAGVPAR 107 (374)
T ss_pred ----HHHHHHHHH------hCCCEEEEcchhHHHHHHHHHhcCCCeE
Confidence 123345554 5789988754433 23355667788853
No 144
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=56.18 E-value=1.1e+02 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=33.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++.--||.|-..-+++++..++++|..|.+++.+.....+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45566789999999999999999999999999987654444
No 145
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=55.84 E-value=1e+02 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=31.4
Q ss_pred CeEEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 4 PHVLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 4 ~hv~~~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.++-++..|+ .|-..-++.-+++...+|-.|.++++.-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3566666655 49999999999999999999999988643
No 146
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.33 E-value=65 Score=23.95 Aligned_cols=86 Identities=23% Similarity=0.125 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHH
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEE 95 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (322)
.---+.++++.|.+.|++| +++....+.+... ++....+......+. .-.+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~---------gi~~~~v~~~~~~~~--------------~~~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN---------GIPVTPVAWPSEEPQ--------------NDKPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc---------CCCceEeeeccCCCC--------------CCchhHHH
Confidence 3445789999999999887 4555555444331 333322211000000 00133556
Q ss_pred HHHHHhccCCCCccEEEecCC---------cchHHHHHHHcCCceE
Q 044384 96 LIEEINSREDEKIDCFIADGN---------MGWSLEVAKKMNVRGG 132 (322)
Q Consensus 96 ll~~l~~~~~~~~d~vI~D~~---------~~~~~~vA~~l~iP~i 132 (322)
++++ .++|+||.-.- .......|-++|+|++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 6655 67999998432 1233467899999985
No 147
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=55.07 E-value=21 Score=29.67 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCCcChHH-HHHHHHHHHhCCCEEEEEeCccch
Q 044384 3 SPHVLVMPGPAQGHVIP-LLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p-~~~la~~La~rGh~VT~it~~~~~ 43 (322)
..+|+ +-..|.+...- ...++++|.++||+|+++.|....
T Consensus 5 ~k~Il-lgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIG-FGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEE-EEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 34555 44456666666 699999999999999999887543
No 148
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=54.57 E-value=21 Score=29.48 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=34.9
Q ss_pred eEEEEcC---CC--CcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC
Q 044384 5 HVLVMPG---PA--QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP 66 (322)
Q Consensus 5 hv~~~p~---p~--~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 66 (322)
||+++-. |+ .|==.-...|+.+|+++||+||+.+...........+ .+++...+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y-------~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY-------NGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCccc-------CCeEEEEeC
Confidence 4666653 33 2555666778888888999999998754432211222 467777775
No 149
>PRK06321 replicative DNA helicase; Provisional
Probab=54.33 E-value=86 Score=30.08 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=32.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~-rGh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.++++...+. .|..|-|++-+-....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 344557899999999999999984 68999999887554444
No 150
>PRK10867 signal recognition particle protein; Provisional
Probab=53.91 E-value=73 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=32.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccchh
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHK 44 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~r-Gh~VT~it~~~~~~ 44 (322)
++++-.+|.|-......||..|+.+ |..|.+++.+....
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4555577889999999999999998 99999999875543
No 151
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.48 E-value=91 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=32.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
++++-.+|.|-..-...||..|.++|++|.+++++.+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 55666788999999999999999999999999987654
No 152
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=53.24 E-value=1.8e+02 Score=26.62 Aligned_cols=108 Identities=12% Similarity=0.037 Sum_probs=55.7
Q ss_pred CCCCcChHHHHHHHHHHHhC-CCEEEEEeCccch-hh----HHhhhccCCCCCCCeEEE-ecCCCCCCCCCCCCHHHHHH
Q 044384 11 GPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYH-KR----VVESLQGKNYLEEQIRLV-SIPDGMEPWEDRNDFGKLIE 83 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~r-Gh~VT~it~~~~~-~~----~~~~~~~~~~~~~~i~~~-~i~~~~~~~~~~~~~~~~~~ 83 (322)
.....-++=|.++.++|.++ ++++.++.|.... .. ...... .++... .+.-.+. ............
T Consensus 7 ~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (365)
T TIGR03568 7 TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK------DGFDIDEKIEILLD-SDSNAGMAKSMG 79 (365)
T ss_pred EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH------cCCCCCCccccccC-CCCCCCHHHHHH
Confidence 35678888899999999874 7888887764332 11 111100 011110 0000010 001112222221
Q ss_pred HHHHHchHHHHHHHHHHhccCCCCccEEEe--cCCcc-hHHHHHHHcCCceEEEc
Q 044384 84 KFLQVMPRKLEELIEEINSREDEKIDCFIA--DGNMG-WSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~--D~~~~-~~~~vA~~l~iP~i~~~ 135 (322)
. +...+.+++++ .+||+||+ |.+.. .+..+|.++|||.+-+.
T Consensus 80 ~----~~~~~~~~~~~------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 80 L----TIIGFSDAFER------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred H----HHHHHHHHHHH------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEE
Confidence 1 22345566666 56787765 44543 55678999999999543
No 153
>PRK11519 tyrosine kinase; Provisional
Probab=53.03 E-value=2.7e+02 Score=28.39 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=31.6
Q ss_pred CeEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.+++++.. ||-|-......||..||..|++|-+|-.+.
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45666664 677999999999999999999999986653
No 154
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=52.96 E-value=2e+02 Score=27.00 Aligned_cols=99 Identities=10% Similarity=0.176 Sum_probs=64.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccch-hhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLI 82 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 82 (322)
++-+-..+.|-.+...+|.++|-++ +..|++-|..+.. +.....+ +..+....+|-.+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D~------------- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLDL------------- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcCc-------------
Confidence 5556667789999999999999998 7777765533332 2332322 1235555565321
Q ss_pred HHHHHHchHHHHHHHHHHhccCCCCcc-EEEecCCc-chHHHHHHHcCCceEEEcc
Q 044384 83 EKFLQVMPRKLEELIEEINSREDEKID-CFIADGNM-GWSLEVAKKMNVRGGVFWS 136 (322)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~ 136 (322)
...+.+.++. .+|| +||++.=. +....-+++.|+|.+.+..
T Consensus 112 -------~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 112 -------PIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred -------hHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 2235566666 4577 66677544 5667889999999998765
No 155
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=52.76 E-value=1e+02 Score=26.74 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHH
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEELIEE 99 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (322)
-..|+++|+..++.+++.|............ ...+. - + ..-.+.+.++|++
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-------~~~~~---~-G------------------~l~~e~l~~~l~e 64 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQI-------GPVRV---G-G------------------FLGAEGLAAFLRE 64 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhcc-------CCeee---c-C------------------cCCHHHHHHHHHH
Confidence 4789999999998888777654432221110 11111 0 0 0123446677776
Q ss_pred HhccCCCCccEEEecCCcchH-------HHHHHHcCCceEEEcc
Q 044384 100 INSREDEKIDCFIADGNMGWS-------LEVAKKMNVRGGVFWS 136 (322)
Q Consensus 100 l~~~~~~~~d~vI~D~~~~~~-------~~vA~~l~iP~i~~~~ 136 (322)
.++| +|+|.--+++ ..+|+..|||++.|--
T Consensus 65 ------~~i~-llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 65 ------EGID-LLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred ------cCCC-EEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 4565 4557665554 4678889999888743
No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.00 E-value=1.7e+02 Score=26.23 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~~ 46 (322)
+|+++-..+-|-++-..++.+.|.++ +.+||+++.......+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL 44 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH
Confidence 47888888899999999999999985 8999999986554433
No 157
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=51.91 E-value=61 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=25.6
Q ss_pred Ccc-EEEecCCc-chHHHHHHHcCCceEEEccchHH
Q 044384 107 KID-CFIADGNM-GWSLEVAKKMNVRGGVFWSSSAA 140 (322)
Q Consensus 107 ~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~~ 140 (322)
.|| +||+|.-. ..+..=|.++|||.|++.-+.+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 577 55567665 47778899999999998766553
No 158
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=51.25 E-value=17 Score=32.04 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCCCccEEEecCCcch-----HHHHHHHcCCceEEEccc
Q 044384 92 KLEELIEEINSREDEKIDCFIADGNMGW-----SLEVAKKMNVRGGVFWSS 137 (322)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~-----~~~vA~~l~iP~i~~~~~ 137 (322)
.++++++++..+. .++-+||.|.|... ..++|.+.+||++++--.
T Consensus 134 ~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 134 HIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 4455554433222 57899999999742 346787999998876543
No 159
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=49.84 E-value=27 Score=31.33 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred eEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p-~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
++++|.-. |-|-.....++|.++|++|++|-++++++.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 36666654 45999999999999999999999999987653
No 160
>PRK06849 hypothetical protein; Provisional
Probab=48.52 E-value=1.9e+02 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++|++. |.+ ....+++++.|.++||+|+++...+
T Consensus 4 ~~~VLI~---G~~-~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLIT---GAR-APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEe---CCC-cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3455555 222 2357899999999999999987764
No 161
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.87 E-value=1.5e+02 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=33.8
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
.++++-..|.|-..-...||..|..+|..|.+++++...
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 466777788899999999999999999999999987553
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.67 E-value=3e+02 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.502 Sum_probs=31.1
Q ss_pred CeEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.+++++.. |+.|-......||..|+..|.+|-+|=.+.
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45666665 567999999999999999999999886654
No 163
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=47.60 E-value=18 Score=30.09 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
--+..|.++|.+.||+|+++.+..++.
T Consensus 14 ~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 14 PGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 346789999977889999999876653
No 164
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=47.51 E-value=54 Score=27.20 Aligned_cols=46 Identities=24% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
+.++++.+.++--|-+...-++..|..+|++|+++...-..+.+..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 3589999999999999999999999999999999877654444433
No 165
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.41 E-value=38 Score=26.59 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|+++++++.+...-||=.-..-+++.|++.|++|......
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 4688999999887799999999999999999999876544
No 166
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.31 E-value=2.8e+02 Score=28.30 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=31.4
Q ss_pred CeEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 4 PHVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 4 ~hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.+++.|.. +|-|-......||..||..|.+|-+|-.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35555554 5779999999999999999999998876544
No 167
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.24 E-value=31 Score=23.61 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCcc
Q 044384 19 PLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it~~~ 41 (322)
.-+++|..|+++|.+||++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998754
No 168
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.95 E-value=59 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHh-CC--CEEEEEeCc
Q 044384 16 HVIPLLEFSQCLAK-HG--FRVTFVNTD 40 (322)
Q Consensus 16 H~~p~~~la~~La~-rG--h~VT~it~~ 40 (322)
|.....+|+++|.+ +| .+|.++-..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 77788999999987 54 566655443
No 169
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=45.73 E-value=1.1e+02 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.4
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCEEEE
Q 044384 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTF 36 (322)
Q Consensus 9 ~p~p~~gH~~p~~~la~~La~rGh~VT~ 36 (322)
=|..+.|-....+.|+++|.+||++|.-
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 3556789999999999999999999874
No 170
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=45.27 E-value=1.7e+02 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~i 37 (322)
-+.++.-++.|-....+.+|-+.+.+|++|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 477888899999999999999999999999766
No 171
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=44.69 E-value=2.1e+02 Score=24.81 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=35.3
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rG--h~VT~it~~~~~~~~ 46 (322)
+++++-..+-|-++-+.++.++|.++. -+||+++.......+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 477888888999999999999999864 899999997665444
No 172
>PRK07773 replicative DNA helicase; Validated
Probab=44.29 E-value=1.3e+02 Score=31.48 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~r-Gh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.+++|...|.+ |..|.+++.+-....+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 4455578999999999999999864 8899999887655444
No 173
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=44.25 E-value=46 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
|++.|++.-.-.|.|-......||..|+.+|.+|.++-+++...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 66656665566788999999999999999999999997775543
No 174
>PRK05636 replicative DNA helicase; Provisional
Probab=43.78 E-value=66 Score=31.12 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=31.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~-rGh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-.+.+|...+. +|..|-+++.+-....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 355567899999999999998884 68889888877554433
No 175
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.94 E-value=54 Score=26.11 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+++++ |.|.+ -...++.|.+.|++||+|++.
T Consensus 14 ~~vlVv---GGG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVII---GGGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEE---CCCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 355655 45543 477889999999999999643
No 176
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=42.93 E-value=36 Score=30.22 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.4
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
..|--.-...|+++|+++||+|++++...
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 12 KCGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CCcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 45888899999999999999999998754
No 177
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=42.18 E-value=47 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|+.++|.++ |-|++ -..+|..|+++||+|+.+-..+
T Consensus 1 m~~~kI~VI---GlG~~--G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MSFETISVI---GLGYI--GLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCccEEEEE---Ccchh--hHHHHHHHHhCCCEEEEEeCCH
Confidence 777788877 56663 4678889999999999987643
No 178
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=42.17 E-value=1.3e+02 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
+++.--||.|-..-.++++..-+++|..|.+++.......+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 4555568899999999999988889999999999866555433
No 179
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=42.12 E-value=45 Score=29.59 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
--..+..+++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 45668899999999999999998754
No 180
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.81 E-value=1.5e+02 Score=25.74 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCCCCccEEEecCCcchH-------HHHHHHcCCceEEEcc
Q 044384 91 RKLEELIEEINSREDEKIDCFIADGNMGWS-------LEVAKKMNVRGGVFWS 136 (322)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~-------~~vA~~l~iP~i~~~~ 136 (322)
+.+++++++ .++++ |+|.--+++ ..+|+++|+|++-|-.
T Consensus 55 ~~l~~~l~~------~~i~~-VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLRE------EGIDL-VIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHH------CCCCE-EEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 345566665 56776 456655554 4678899999998864
No 181
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=41.69 E-value=35 Score=22.78 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~ 40 (322)
-+..|..|+++|++||++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 356788999999999998543
No 182
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.69 E-value=55 Score=29.28 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
.|.+--.||-|--.-.-.|.++|.++||+|-++..++..
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 356666899999999999999999999999999877644
No 183
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=40.87 E-value=3e+02 Score=25.55 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=61.6
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCC-CEEEEEeCccch-hhHHhhh-ccCCCCCCCeEEEecCCC-CCCCCCCC
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG-FRVTFVNTDYYH-KRVVESL-QGKNYLEEQIRLVSIPDG-MEPWEDRN 76 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rG-h~VT~it~~~~~-~~~~~~~-~~~~~~~~~i~~~~i~~~-~~~~~~~~ 76 (322)
|.+.+|+++ +..+=-++=|..+.+++-+.+ .+..++.|.-+. ..+...+ .. -+++. |+. +.......
T Consensus 1 m~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-----~~i~~---pdy~L~i~~~~~ 71 (383)
T COG0381 1 MKMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-----FGIRK---PDYDLNIMKPGQ 71 (383)
T ss_pred CCceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHH-----hCCCC---CCcchhccccCC
Confidence 555556544 355677888999999999987 776666654332 1232221 00 01211 221 11111122
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhccCCCCccEEEe--cCCcchH-HHHHHHcCCceEEE
Q 044384 77 DFGKLIEKFLQVMPRKLEELIEEINSREDEKIDCFIA--DGNMGWS-LEVAKKMNVRGGVF 134 (322)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~--D~~~~~~-~~vA~~l~iP~i~~ 134 (322)
++.+.... +-..+.+++.+ .+||+|++ |.....+ ..+|.+.+||..-+
T Consensus 72 tl~~~t~~----~i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~Hv 122 (383)
T COG0381 72 TLGEITGN----IIEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHV 122 (383)
T ss_pred CHHHHHHH----HHHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEE
Confidence 22222222 22346667766 57887665 6555434 67888899997654
No 184
>PRK09620 hypothetical protein; Provisional
Probab=40.49 E-value=29 Score=29.67 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 044384 21 LEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 21 ~~la~~La~rGh~VT~it~~ 40 (322)
.+||++|.++|++||++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999754
No 185
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.94 E-value=48 Score=31.30 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
..+++++ |.|+ .-+ .+|+.|+++|++||++...
T Consensus 5 ~k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCC
Confidence 4456655 6666 444 9999999999999988764
No 186
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=39.70 E-value=2.2e+02 Score=23.68 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
-++.|-......|++.|.++|++|-++=
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4567999999999999999999998764
No 187
>PRK09165 replicative DNA helicase; Provisional
Probab=39.69 E-value=1.6e+02 Score=28.50 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC---------------CCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~r---------------Gh~VT~it~~~~~~~~ 46 (322)
+++-.-|+.|-..-++.++...+.+ |..|.+++.+-....+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 4455578999999999999998854 7889999887555444
No 188
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=39.06 E-value=76 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=32.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|+++..-++.|-......+++.|+++|.+|-++.+.+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4677778889999999999999999999999988876
No 189
>PRK07236 hypothetical protein; Provisional
Probab=38.48 E-value=57 Score=30.04 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
|...+|+++ |.| ..-+.+|..|+++|++||++=-
T Consensus 4 ~~~~~ViIV---GaG--~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVI---GGS--LGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEE---CCC--HHHHHHHHHHHhCCCCEEEEec
Confidence 566678877 344 5567889999999999999864
No 190
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=38.33 E-value=75 Score=27.22 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=32.6
Q ss_pred EEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccchhh
Q 044384 6 VLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (322)
Q Consensus 6 v~~~p~p-~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~ 45 (322)
|.+...- |-|-....+.||.+|++||-.|++|=.+++++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 3344443 559999999999999999999999999887653
No 191
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.16 E-value=34 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~ 40 (322)
-.+|+++|+++|++||++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 468899999999999998743
No 192
>PRK08939 primosomal protein DnaI; Reviewed
Probab=37.73 E-value=64 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
.+++.-.+|.|-..-+.+++.+|+++|..|++++.+....
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 5788888898998899999999999999999998754333
No 193
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.32 E-value=47 Score=27.25 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~ 45 (322)
||++.-. |.+-..-...+.++|.++|++|.++.|..-.+.
T Consensus 3 ~Ill~vt-Gsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 3 NILLAVS-GSIAAYKAADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred EEEEEEe-ChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 3555543 444455589999999999999999988754443
No 194
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=37.25 E-value=29 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.0
Q ss_pred EEEEecCCcccCCHHHHHHHHHcc
Q 044384 271 VIYAAFGSLTILDQVQFQEFVDAR 294 (322)
Q Consensus 271 VIYvSfGS~~~l~~~q~~ela~~l 294 (322)
.+|+|+||+..=+.++++....+|
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L 26 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAAL 26 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHH
Confidence 689999999987777788777777
No 195
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.79 E-value=41 Score=33.21 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=35.5
Q ss_pred CCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCCCCCCCCC
Q 044384 267 QPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPTTRMSARS 308 (322)
Q Consensus 267 ~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~~~~~~~~ 308 (322)
+++-|||.||--...++++-++.-++-| ||++|.|.+.+.+.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf 804 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRF 804 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHH
Confidence 4567999999999999999999888777 99999998865433
No 196
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=36.74 E-value=2.3e+02 Score=23.02 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
-|-++.-.|+|-....+-+|-+-+.+|.+|.++-.-+
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlK 41 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLK 41 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS-
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEec
Confidence 4778888999999999999999999999999886543
No 197
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=36.49 E-value=37 Score=31.51 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
-|++|.....|+-+-+-.+|.+||++|+-|..+-..
T Consensus 101 PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp EEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 588999999999999999999999999888776443
No 198
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=35.73 E-value=77 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCCCeEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVL-VMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~-~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|.+++++ ++.-.|-|-.+....||..|+++|.+|-+|-.++
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5555544 4433456999999999999999999999985554
No 199
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=35.73 E-value=3.7e+02 Score=25.02 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCcChHHHHHHHHHHHh--CCCEEE---EEeCcc
Q 044384 13 AQGHVIPLLEFSQCLAK--HGFRVT---FVNTDY 41 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~--rGh~VT---~it~~~ 41 (322)
|+|-=.-.+.++++|.+ +|++|. ++.+..
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~ 39 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGR 39 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCH
Confidence 44555667899999998 699999 887753
No 200
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.64 E-value=2.9e+02 Score=23.78 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhCC-CEEEEEeCccch--hhHHhhhccCCCCCCCeEEEecC-CCCCCCCCCCCHHHHHHHHHHHchHH
Q 044384 17 VIPLLEFSQCLAKHG-FRVTFVNTDYYH--KRVVESLQGKNYLEEQIRLVSIP-DGMEPWEDRNDFGKLIEKFLQVMPRK 92 (322)
Q Consensus 17 ~~p~~~la~~La~rG-h~VT~it~~~~~--~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (322)
.+|..++..+|..-| .+|.++|++... ..+...+. ..+|++..+- .+...... +.+.-.+.
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~-----~~G~eV~~~~~~~~~~~~~----------ia~i~p~~ 169 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFA-----VRGFEIVNFTCLGLTDDRE----------MARISPDC 169 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH-----hCCcEEeeeeccCCCCCce----------eeecCHHH
Confidence 467788888888888 678888886432 22223221 1355554442 11111100 11112334
Q ss_pred HHHHHHHHhccCCCCccEEEecCCcchHH----HHHHHcCCceEEE
Q 044384 93 LEELIEEINSREDEKIDCFIADGNMGWSL----EVAKKMNVRGGVF 134 (322)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~~~~----~vA~~l~iP~i~~ 134 (322)
+.++++++.. ...|.|+.-.-...+. .+=+.+|+|.+.-
T Consensus 170 i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 170 IVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 4455554422 4578776654433333 3456679997644
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=35.38 E-value=76 Score=25.81 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=33.0
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
..++++-.+|.|-..-...+++++..+|+.|-|++.......+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 3688888899988888999999999999999999876544433
No 202
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=35.26 E-value=57 Score=26.96 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
|+++--..+.|=+.-...+.++|.++|++|+++.+..-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 34433333333344445999999999999999988654
No 203
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.15 E-value=44 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHcc
Q 044384 268 PSSVIYAAFGSLTILDQVQFQEFVDAR 294 (322)
Q Consensus 268 ~~sVIYvSfGS~~~l~~~q~~ela~~l 294 (322)
..-+|.+++|++-....++++++...+
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~ 76 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDAL 76 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHc
Confidence 446999999999988899999998877
No 204
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=34.51 E-value=41 Score=30.04 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 044384 21 LEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 21 ~~la~~La~rGh~VT~it~~ 40 (322)
.+.|++||+||.+|.+|+-.
T Consensus 63 KayA~eLAkrG~nvvLIsRt 82 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRT 82 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 57899999999998888754
No 205
>PLN02891 IMP cyclohydrolase
Probab=34.48 E-value=1.1e+02 Score=29.54 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 67 (322)
.=+..||+.|.+.|.+ +++|....+.+.. .+|.+..+.+
T Consensus 33 tgi~~fAk~L~~~gve--IiSTgGTak~L~e---------~Gi~v~~Vsd 71 (547)
T PLN02891 33 TDLALLANGLQELGYT--IVSTGGTASALEA---------AGVSVTKVEE 71 (547)
T ss_pred cCHHHHHHHHHHCCCE--EEEcchHHHHHHH---------cCCceeeHHh
Confidence 3467899999998855 5777776666644 3677776664
No 206
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=34.34 E-value=96 Score=26.79 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=37.4
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
-+++.-.|+.|+.+-..+++.+.+++|..|-++++......+..
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 46677789999999999999999999999999999866555443
No 207
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.34 E-value=2.7e+02 Score=23.13 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=57.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc----chh-hHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY----YHK-RVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFG 79 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~----~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 79 (322)
-+.++.-+|+|-....+.++-+-+-+|.+|-++-.-+ +-+ ..... ....+.+...++++........ .
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~------~~~~v~~~~~~~g~tw~~~~~~-~ 102 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK------FGLGVEFHGMGEGFTWETQDRE-A 102 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh------hccceeEEecCCceeCCCcCcH-H
Confidence 4788999999999999999999999998888764321 111 11111 1135888888776543211110 0
Q ss_pred HHHHHHHHHchHHHHHHHHHHhccCCCCccEEEecCCc
Q 044384 80 KLIEKFLQVMPRKLEELIEEINSREDEKIDCFIADGNM 117 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~ 117 (322)
+. . .+....+...+.+.. .++|+||.|-++
T Consensus 103 d~-~----aa~~~w~~a~~~l~~---~~ydlviLDEl~ 132 (198)
T COG2109 103 DI-A----AAKAGWEHAKEALAD---GKYDLVILDELN 132 (198)
T ss_pred HH-H----HHHHHHHHHHHHHhC---CCCCEEEEehhh
Confidence 11 1 122223333333322 679999999654
No 208
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.31 E-value=44 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 044384 19 PLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it~ 39 (322)
-+...|++|++||++|+.+-.
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEec
Confidence 357899999999999986543
No 209
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=33.93 E-value=43 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~ 41 (322)
-..+|..|+++||+|++.+...
T Consensus 11 G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 11 GTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHcCCEEEEEeccH
Confidence 3588999999999999999864
No 210
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.40 E-value=51 Score=26.72 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccch
Q 044384 90 PRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (322)
...++..++++.. ..+|+||-+.. +..+|+++|+|.+.+.++-
T Consensus 111 ~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 111 EEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 3567777777665 45999999963 4689999999998887644
No 211
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=33.38 E-value=30 Score=17.39 Aligned_cols=17 Identities=18% Similarity=0.872 Sum_probs=14.0
Q ss_pred ccccccCCCCCCcEEEE
Q 044384 258 NCLKWLDQQQPSSVIYA 274 (322)
Q Consensus 258 ~~~~wLd~~~~~sVIYv 274 (322)
.|..|..++++.-.+|.
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 58999999888777774
No 212
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=32.96 E-value=3.8e+02 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=24.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
++.++..|+. ...+++.|.+-|-+|..+.+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6777776666 778888889999999987654
No 213
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.83 E-value=46 Score=29.17 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
-++++-.+.| --.++|++||+|||+|.++.-.
T Consensus 8 ~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 8 TALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred EEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 3444444333 2478999999999999988753
No 214
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=32.28 E-value=3.3e+02 Score=23.52 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=29.3
Q ss_pred CeEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 4 PHVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 4 ~hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+++.+.. +|.|-..-...||..||+.|++|-+|=..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 35555554 56799999999999999999999988553
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.26 E-value=62 Score=28.94 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|.+++|+++-..+.| .-+|..|++.||+||++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 456788888544444 456788999999999998754
No 216
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.16 E-value=56 Score=27.68 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=60.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKF 85 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (322)
+++--+|+.|...-..+|+++|.+++|+|..++.... ..|.. .+.++. ..+ ..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~---------------~~i~~---DEslpi------~ke---~y 56 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL---------------RGILW---DESLPI------LKE---VY 56 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh---------------hheec---ccccch------HHH---HH
Confidence 4555589999999999999999999999876654210 01221 011110 111 11
Q ss_pred HHHchHHHHHHHHHHhccCCCCccEEEecCCcch------HHHHHHHcCCceEEEccchHHHHH
Q 044384 86 LQVMPRKLEELIEEINSREDEKIDCFIADGNMGW------SLEVAKKMNVRGGVFWSSSAASVA 143 (322)
Q Consensus 86 ~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~------~~~vA~~l~iP~i~~~~~~~~~~~ 143 (322)
.....+....+|.+.. +=-+||+|..... ..-.|.+++.++.++......-..
T Consensus 57 res~~ks~~rlldSal-----kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc 115 (261)
T COG4088 57 RESFLKSVERLLDSAL-----KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTC 115 (261)
T ss_pred HHHHHHHHHHHHHHHh-----cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHH
Confidence 1222333444554421 1248999987532 234688899998777665544433
No 217
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.09 E-value=82 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCC--cChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 2 SSPHVLVMPGPAQ--GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 2 ~~~hv~~~p~p~~--gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+++|+++.-|+- |--+. .+++|+..||.++++.+.
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 4567999998875 33333 899999999999988765
No 218
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=31.95 E-value=33 Score=24.99 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCccccccCCCCCCcEEEEecCCcccC---CH--HHHHHHHHcc
Q 044384 256 DSNCLKWLDQQQPSSVIYAAFGSLTIL---DQ--VQFQEFVDAR 294 (322)
Q Consensus 256 ~~~~~~wLd~~~~~sVIYvSfGS~~~l---~~--~q~~ela~~l 294 (322)
+..+-.||...+.+--|.+++||.... +. ..+.++..++
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~al 70 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEAL 70 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHH
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 346788999988889999999998743 33 4677777777
No 219
>PRK05920 aromatic acid decarboxylase; Validated
Probab=31.48 E-value=71 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.8
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+|++ -..|.+...=...+.++|.+.|++|+++.|..-.+.+
T Consensus 5 rIll-gITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 5 RIVL-AITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred EEEE-EEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 4443 3456666678899999999999999999987654444
No 220
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.47 E-value=45 Score=31.89 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 044384 21 LEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 21 ~~la~~La~rGh~VT~it~~ 40 (322)
..||++++.||++||+|+.+
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCC
Confidence 57899999999999999865
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=31.35 E-value=87 Score=28.43 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
..++++-.+|.|-..-...+|++|..+|+.|.+++......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 35788888888888888999999999999999988754433
No 222
>PLN00016 RNA-binding protein; Provisional
Probab=31.22 E-value=67 Score=29.51 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+|++.-.-+.|+=.--.+|+++|.++||+|+.++-.
T Consensus 54 ~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 54 KVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred eEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 566663333444445678899999999999998864
No 223
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.10 E-value=1.2e+02 Score=20.62 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
+++...+|.|-......++..|+++|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344555678999999999999999999998765
No 224
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.07 E-value=74 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~ 42 (322)
-..++++|.++||+|+.++-.+.
T Consensus 11 G~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 11 GRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHHCCCEEEEEecCch
Confidence 45789999999999999987644
No 225
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.01 E-value=1.2e+02 Score=26.89 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCCcC-----hHHHHHHHHHHHhCCCEEEEEeC
Q 044384 1 MSSPHVLVMPGPAQGH-----VIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH-----~~p~~~la~~La~rGh~VT~it~ 39 (322)
|++.+|+++.- |.|+ +....++++.|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~g-g~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYG-GDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeC-CCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 78888887763 4454 56778899999999999988754
No 226
>PLN02949 transferase, transferring glycosyl groups
Probab=30.70 E-value=4.8e+02 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=21.4
Q ss_pred cChHHHHHHHHHHHhCCC--EEEEEeCc
Q 044384 15 GHVIPLLEFSQCLAKHGF--RVTFVNTD 40 (322)
Q Consensus 15 gH~~p~~~la~~La~rGh--~VT~it~~ 40 (322)
|==-.+...++.|.++|| +|+++|+.
T Consensus 48 G~ERvl~~a~~~l~~~~~~~~v~iyt~~ 75 (463)
T PLN02949 48 GGERVLWCAVRAIQEENPDLDCVIYTGD 75 (463)
T ss_pred ChhhHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 666788888899999988 88888865
No 227
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=30.67 E-value=53 Score=29.00 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCccch
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~~ 43 (322)
-.+|..+|.+.||+||++|-.+..
T Consensus 11 G~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 11 GRALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred hHHHHHHHHhCCCeEEEEEcCCcc
Confidence 357888999999999999976543
No 228
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.58 E-value=2.9e+02 Score=22.23 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccch-hhHHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHH
Q 044384 19 PLLEFSQCLAKHGFRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIEKFLQVMPRKLEELI 97 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (322)
-+..+.+...++|..|.++...+.. ..+...+. ...++++++....+.- .....++++
T Consensus 36 l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i~ 94 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAII 94 (172)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHHH
Confidence 4556677777789999999876432 22222110 1124677765443311 111233444
Q ss_pred HHHhccCCCCccEEEecCCcc----hHHHHHHHcCCceEEEccchHHH
Q 044384 98 EEINSREDEKIDCFIADGNMG----WSLEVAKKMNVRGGVFWSSSAAS 141 (322)
Q Consensus 98 ~~l~~~~~~~~d~vI~D~~~~----~~~~vA~~l~iP~i~~~~~~~~~ 141 (322)
+.+++ .++|+|++-+-.+ |.....++++.+ +.+...+++.
T Consensus 95 ~~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 95 NRINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 44443 5689999998775 677788888888 5555554443
No 229
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=30.40 E-value=1e+02 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=29.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+.++-+.+.|-..-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666778899999999999999999999998653
No 230
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=30.23 E-value=3e+02 Score=22.73 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP 66 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 66 (322)
.-+..+++.|.+.|+++ +.|....+.+.. .+|....+.
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e---------~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKE---------AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHH---------cCCeEEEhh
Confidence 34678999999999888 455555555543 356665554
No 231
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.08 E-value=56 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
|.|++ -..|+++|++.||+|++.+.....
T Consensus 8 GtGni--G~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNI--GSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChH--HHHHHHHHHhCCCeEEEecCCChh
Confidence 44544 457889999999999999776544
No 232
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=30.00 E-value=71 Score=26.08 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
..|.+...-...+.++|.++|++|.++.+..-.+
T Consensus 7 vtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 7 VTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 3455566667799999999999999998875443
No 233
>PRK09739 hypothetical protein; Provisional
Probab=29.97 E-value=1.5e+02 Score=24.39 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=24.2
Q ss_pred CCCCeEEEEc-CCCC-cCh-HHHHHHHHHHHhCCCEEEEEeC
Q 044384 1 MSSPHVLVMP-GPAQ-GHV-IPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 1 m~~~hv~~~p-~p~~-gH~-~p~~~la~~La~rGh~VT~it~ 39 (322)
|..++++++- +|-. |.. .....+.++|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 5656666664 4543 222 2355666777788999997753
No 234
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=29.50 E-value=82 Score=23.82 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
+..+-+.|..|.+.+.|.-++.+.|.+.-.++.++|+.+.
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 3467889999999999999999999999999999999754
No 235
>PRK07206 hypothetical protein; Provisional
Probab=29.45 E-value=3.5e+02 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+++++-. . .....+++++.++|+++.+++...
T Consensus 4 ~~liv~~-~----~~~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDP-F----SSGKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcC-C----chHHHHHHHHHHcCCeEEEEEcCC
Confidence 5666643 2 224568899999999998888764
No 236
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=29.38 E-value=30 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=25.3
Q ss_pred cc-EEEecCCc-chHHHHHHHcCCceEEEccchHH
Q 044384 108 ID-CFIADGNM-GWSLEVAKKMNVRGGVFWSSSAA 140 (322)
Q Consensus 108 ~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~~ 140 (322)
|| +||+|.-. .-+..-|.++|||.|+++-+.+.
T Consensus 119 P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~ 153 (249)
T PTZ00254 119 PRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSP 153 (249)
T ss_pred CCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCC
Confidence 55 67778776 46778899999999999765543
No 237
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=29.18 E-value=1e+02 Score=26.94 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCCCCccEEEecCCcc------hHHHHHHHcCCceEEEccc
Q 044384 93 LEELIEEINSREDEKIDCFIADGNMG------WSLEVAKKMNVRGGVFWSS 137 (322)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~------~~~~vA~~l~iP~i~~~~~ 137 (322)
+.+.+++ ..||+|++-.-.. -+..+|+.||+|.+.+...
T Consensus 104 La~ai~~------~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQK------AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHH------hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4455555 3499999975542 2457999999999987654
No 238
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=29.08 E-value=6.2e+02 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=29.8
Q ss_pred CCCCeEEEEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 1 MSSPHVLVMPG-PAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 1 m~~~hv~~~p~-p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
|.+ .+.+.+. ++.|-....+.|++.|.++|.+|-++=+
T Consensus 1 m~k-~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 1 MSR-SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 444 4666644 4569999999999999999999998754
No 239
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=28.89 E-value=28 Score=28.96 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=25.0
Q ss_pred Ccc-EEEecCCc-chHHHHHHHcCCceEEEccchH
Q 044384 107 KID-CFIADGNM-GWSLEVAKKMNVRGGVFWSSSA 139 (322)
Q Consensus 107 ~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~ 139 (322)
.|| +||+|... .-+..-|.++|||.|++.-+.+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 366 66678765 4677889999999999875544
No 240
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=28.82 E-value=1.3e+02 Score=23.94 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
+++.-.||.|-......++..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45566789999999999999999999999999987543
No 241
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.40 E-value=2.3e+02 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecC
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP 66 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 66 (322)
.=+..+++.|.+.|++| ++|....+.+.. .+|.+..+.
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e---------~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAE---------AGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHH---------CCCeEEEee
Confidence 34678999999999888 455556555544 356665554
No 242
>PRK14098 glycogen synthase; Provisional
Probab=28.24 E-value=63 Score=31.08 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=29.6
Q ss_pred CeEEEEcC---C---CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPG---P---AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~---p---~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
++|+++.. | ..|=-..+-.|.++|+++||+|.++.+..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 46666642 1 34777889999999999999999999853
No 243
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.18 E-value=2.2e+02 Score=24.68 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCCccEEEecCCcc--hHHHHHHHcCCceEEEccch
Q 044384 92 KLEELIEEINSREDEKIDCFIADGNMG--WSLEVAKKMNVRGGVFWSSS 138 (322)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~vA~~l~iP~i~~~~~~ 138 (322)
.+.++.+.+.+ .+..||+++.... .+-.+|+..|++.+.+.+.+
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 45555555543 5689999998764 34589999999988887665
No 244
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=28.06 E-value=4.8e+02 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=22.4
Q ss_pred CeEEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 4 PHVLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 4 ~hv~~~p-~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+|+++- ....| ..+|+.|.++||+|+++...
T Consensus 99 ~~I~IiGG~GlmG-----~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLG-----RLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhh-----HHHHHHHHHCCCeEEEeCCC
Confidence 3567664 33334 35788899999999998753
No 245
>PLN02316 synthase/transferase
Probab=27.99 E-value=68 Score=33.94 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.1
Q ss_pred CeEEEEcC---C---CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPG---P---AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~---p---~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+||+++.. | ..|=-..+..|+++|+++||+|.++++..
T Consensus 588 M~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 588 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred cEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57777652 3 23555667899999999999999999864
No 246
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=27.96 E-value=4.5e+02 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCc
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~ 40 (322)
.-..+|+++|.++ |+|++++..
T Consensus 20 ~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 20 VHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred HHHHHHHHHHHHh-cCeeEEcCC
Confidence 5677999999987 788877764
No 247
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.86 E-value=1.5e+02 Score=24.63 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=32.2
Q ss_pred HHHHHHHHhccC-CCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 044384 93 LEELIEEINSRE-DEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSS 137 (322)
Q Consensus 93 ~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~ 137 (322)
++++++...... +..+.+||+|---..+..-|++.|||...+..-
T Consensus 14 lqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 14 LQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 455555543211 135889999987788899999999999877543
No 248
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=27.82 E-value=75 Score=24.60 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 044384 21 LEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 21 ~~la~~La~rGh~VT~it~~~ 41 (322)
.-+|.+|++.||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 357889999999999999876
No 249
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=27.67 E-value=1e+02 Score=26.26 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=35.7
Q ss_pred CCCcEEEEecCCcccCCHHHHHHHHHcc----eeeecCCCCCCCCCCC
Q 044384 267 QPSSVIYAAFGSLTILDQVQFQEFVDAR----FWLRLPTTRMSARSTS 310 (322)
Q Consensus 267 ~~~sVIYvSfGS~~~l~~~q~~ela~~l----lWv~r~~~~~~~~~~~ 310 (322)
++.-++..|-|+.+.-...-+.-+|.+| +|++|-+=....||.+
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~g 78 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEG 78 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCC
Confidence 3455899999999988888888899998 9999998666556644
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=27.62 E-value=1.5e+02 Score=25.44 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=35.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
+++.--||.|-.+-.++++...+.+|..|.|++.+.....+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 4566678999999999999999999999999998866555443
No 251
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=27.48 E-value=61 Score=27.58 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCEEEEEe
Q 044384 19 PLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it 38 (322)
--.++|++|+++|++|+++.
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEc
Confidence 34789999999999999875
No 252
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.47 E-value=3.5e+02 Score=25.69 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=33.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
-|+++-.-|.|-....--||+.|.++|+.|-++..+-..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 356666789999999999999999999999999987544
No 253
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.44 E-value=84 Score=25.73 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
...+.++|.++|++|.++.|+.-.+.+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 378999999999999999997655444
No 254
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=27.42 E-value=2.6e+02 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=31.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
+.++-.|+.|-.+-.++++.+.+.+|-.+.|+.++...
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 34666788899999999999999999999999887543
No 255
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=27.37 E-value=32 Score=28.85 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=25.2
Q ss_pred Ccc-EEEecCCc-chHHHHHHHcCCceEEEccchHH
Q 044384 107 KID-CFIADGNM-GWSLEVAKKMNVRGGVFWSSSAA 140 (322)
Q Consensus 107 ~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~~ 140 (322)
.|| +||+|.-. .-+..-|.++|||.|++.-+.+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~d 149 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNL 149 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCC
Confidence 366 56667765 46678899999999999765543
No 256
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.20 E-value=1.2e+02 Score=26.61 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
++++..+|-|-..-...||..|+++|++|.++..+..
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 5566677889999999999999999999999998753
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=27.13 E-value=2.1e+02 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=32.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
+.++-.|+.|-.+-.++++.+.+++|-.|.||.++...
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 45666788999999999999999999999999887543
No 258
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=27.06 E-value=1.1e+02 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=28.2
Q ss_pred EEEE--cCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 6 VLVM--PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 6 v~~~--p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
|+++ -+|..||..-..++. +|.++||+|++++..+.
T Consensus 3 ia~~~~~~P~~setFi~~ei~-~l~~~G~~v~~~s~~~~ 40 (406)
T PRK15427 3 VGFFLLKFPLSSETFVLNQIT-AFIDMGFEVEIVALQKG 40 (406)
T ss_pred EEEEeccCCccchhhHHHHHH-HHHHcCceEEEEEccCC
Confidence 4444 489999999987765 67899999999987543
No 259
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.06 E-value=1.1e+02 Score=26.36 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=29.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|+++-=.|-|...-...||..||++|++|-++=.++
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 666655667999999999999999999998885543
No 260
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=27.00 E-value=1e+02 Score=26.34 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=27.5
Q ss_pred EcCCCCcCh-HHHHHHHHHHHhC--CCEEEEEeCccchh
Q 044384 9 MPGPAQGHV-IPLLEFSQCLAKH--GFRVTFVNTDYYHK 44 (322)
Q Consensus 9 ~p~p~~gH~-~p~~~la~~La~r--Gh~VT~it~~~~~~ 44 (322)
+-..|.|+. .=...++++|.++ |++|.++.+..-.+
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 334465666 5788999999999 99999999875443
No 261
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.98 E-value=57 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~ 41 (322)
-..+|+.|+++||+|+.|-..+
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcCH
Confidence 4689999999999999987653
No 262
>PRK04148 hypothetical protein; Provisional
Probab=26.95 E-value=67 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 044384 21 LEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 21 ~~la~~La~rGh~VT~it~~ 40 (322)
..+|+.|+++||+|+.+=..
T Consensus 29 ~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 29 FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 35788899999999987543
No 263
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.83 E-value=1.3e+02 Score=27.25 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.8
Q ss_pred CeEEEEcCCCC-cChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 4 PHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 4 ~hv~~~p~p~~-gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
.|+++|.--|. |-..-..++|-.||++|..|-++++++.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 47888886554 99999999999999999888878887654
No 264
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=73 Score=29.79 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEcCC---CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 6 VLVMPGP---AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 6 v~~~p~p---~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+.+=|.. --||+.|+.-|. +|...||+|+++...
T Consensus 37 ~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 37 IGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred EeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 4444543 239999998765 799999999998764
No 265
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=26.78 E-value=3.2e+02 Score=21.59 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~~~ 42 (322)
+.++.+.|.++|+.+.++|...+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 46778889999999999986543
No 266
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=26.69 E-value=1.1e+02 Score=24.99 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCcChHH-HHHHHHHHHh-CCCEEEEEeCccchh
Q 044384 13 AQGHVIP-LLEFSQCLAK-HGFRVTFVNTDYYHK 44 (322)
Q Consensus 13 ~~gH~~p-~~~la~~La~-rGh~VT~it~~~~~~ 44 (322)
|.||... ..++.++|.+ +|++|+++.+..-.+
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 4578877 8899999984 699999999875543
No 267
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=26.52 E-value=61 Score=28.36 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCEEEEEeCc
Q 044384 22 EFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 22 ~la~~La~rGh~VT~it~~ 40 (322)
-+|..|++.||+||++...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788899999999999875
No 268
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=26.51 E-value=1.4e+02 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=29.9
Q ss_pred eEEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
++.++-+.+ .--+.+..-++...+++|++|++..|+.-..
T Consensus 4 k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~ 44 (137)
T COG2210 4 KLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLM 44 (137)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHH
Confidence 344444334 4778899999999999999999998875443
No 269
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.48 E-value=1.6e+02 Score=22.68 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=26.1
Q ss_pred eEEEEcCCCC-cChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~-gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
-++++-.|-. =.+-..+=++.+|-++|++||+..++
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 3555555543 44555677889999999999998875
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=26.40 E-value=1.8e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+++.-.||.|-..-.++++...++.|..|.++++......+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 46677789999999999999999999999999987655544
No 271
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=26.38 E-value=64 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=16.0
Q ss_pred CCCCCCcEEEEecCCcccCCHHHHH
Q 044384 264 DQQQPSSVIYAAFGSLTILDQVQFQ 288 (322)
Q Consensus 264 d~~~~~sVIYvSfGS~~~l~~~q~~ 288 (322)
++++.+-.+|+|+||+..=+.+.++
T Consensus 2 ~~~~~~~~v~i~LGSNlg~~~~~l~ 26 (163)
T PRK14092 2 NGSPASALAYVGLGANLGDAAATLR 26 (163)
T ss_pred CCCCcCCEEEEEecCchHhHHHHHH
Confidence 3445556789999999743333333
No 272
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.38 E-value=1.7e+02 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
+++++. |.| +.-..+++.|.+.|++|+++.
T Consensus 29 k~v~I~---G~G--~vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 29 KTVAVQ---GLG--KVGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CEEEEE---CCC--HHHHHHHHHHHHCCCEEEEEc
Confidence 456665 445 566789999999999999553
No 273
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.32 E-value=87 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
-|.+.++++|.++|.+|.+.=+.-.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~ 41 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVD 41 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccC
Confidence 4789999999999999987765433
No 274
>PRK06179 short chain dehydrogenase; Provisional
Probab=26.30 E-value=1.4e+02 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|.+.+.+++.- +.|-+ -.+++++|+++|++|+.+...
T Consensus 1 m~~~~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 44334455542 33433 579999999999999877653
No 275
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.25 E-value=5.5e+02 Score=24.14 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.4
Q ss_pred HHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEE
Q 044384 93 LEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVF 134 (322)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~ 134 (322)
+++++++ .++|++|.+.. ...+|+++|+|.+-+
T Consensus 364 ~~~~l~~------~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 364 IESYAKE------LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHh------cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 4555555 57999999864 568999999998755
No 276
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.16 E-value=1.8e+02 Score=21.40 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=31.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
++....++..|-....-++..|.++|++|.++......
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~ 39 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPP 39 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCH
Confidence 45666788899999999999999999999988664433
No 277
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=5.3e+02 Score=23.86 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHhhhccCCCCCCCeEEEecCC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 67 (322)
+.|++++....-||--=|.-=|.-||+.|++|+++........ .... + .++|+++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~----~-hprI~ih~m~~ 70 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL----N-HPRIRIHGMPN 70 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh----c-CCceEEEeCCC
Confidence 5578888888889999999999999999999999876543211 1111 1 26899998874
No 278
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.11 E-value=1.4e+02 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
.+++++ |.|-+ -...++.|.+.|++||++++.
T Consensus 11 k~vLVI---GgG~v--a~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIV---GGGKV--AGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEE---CCCHH--HHHHHHHHHHCCCeEEEEcCC
Confidence 356666 44443 367788999999999999864
No 279
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.99 E-value=1.2e+02 Score=26.21 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=30.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.|+++.=.|-|-..-...||..|+++|++|-+|=.++.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 36666545569999999999999999999999865543
No 280
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=25.88 E-value=1.3e+02 Score=26.07 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=28.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|+++.=.|-|-..-...||..||++|++|-+|=.+
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 66665456689999999999999999999988443
No 281
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.70 E-value=1.1e+02 Score=28.69 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=19.1
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 044384 106 EKIDCFIADGNMGWSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 106 ~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~ 135 (322)
.+||++|.+. ....+|+++|+|.+.+.
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 4578888876 34456788888887664
No 282
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=25.70 E-value=1.5e+02 Score=22.21 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.5
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 7 LVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 7 ~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
+++-....+.-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 334444455677799999999999988887754
No 283
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=25.68 E-value=1.5e+02 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
.|.++-+...|-..-...|+++|.++|++|-++-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 46777777889999999999999999999986543
No 284
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=25.63 E-value=1.2e+02 Score=24.92 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccchhhH
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~-rGh~VT~it~~~~~~~~ 46 (322)
+|++--.. .+-..=..+++++|.+ .|++|+++.|....+.+
T Consensus 3 ~IllgVTG-siaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 3 RLIVGISG-ASGAIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred EEEEEEEC-HHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 35544444 4346668999999999 59999999997655444
No 285
>PRK12377 putative replication protein; Provisional
Probab=25.55 E-value=1.4e+02 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.+++.-.||.|-..-..+++++|.++|+.|.+++....
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 46777778888888888888888888888877776543
No 286
>TIGR02157 PA_CoA_Oxy2 phenylacetate-CoA oxygenase, PaaH subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=25.49 E-value=41 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred cEEEEecCCcccCCHHHHHHHHHcc---------eeeecCCCCCCCCC
Q 044384 270 SVIYAAFGSLTILDQVQFQEFVDAR---------FWLRLPTTRMSARS 308 (322)
Q Consensus 270 sVIYvSfGS~~~l~~~q~~ela~~l---------lWv~r~~~~~~~~~ 308 (322)
|--..=-||.-.-+++...+.|.-+ |||++.......+.
T Consensus 13 g~~h~HvGSvhA~d~e~Al~~Ard~y~RR~e~vsiWVVp~~~I~as~p 60 (90)
T TIGR02157 13 GLPHQHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTP 60 (90)
T ss_pred CCCcceEeeeeCCCHHHHHHHHHHHhccccCCcEEEEeeHHHhhcCCh
Confidence 4444556888777888887777765 99998876654443
No 287
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=25.48 E-value=44 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=32.1
Q ss_pred cccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc---------eeeecCCCCCCCCC
Q 044384 259 CLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR---------FWLRLPTTRMSARS 308 (322)
Q Consensus 259 ~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l---------lWv~r~~~~~~~~~ 308 (322)
++-|..+ +.|--..=-||.-.-+++...+.|.-+ |||++.......+.
T Consensus 9 wEVFvr~--~~g~~h~HvGSvhApd~e~Al~~Ar~~y~RR~e~vsiWVVp~~~I~as~p 65 (95)
T PRK13781 9 WEVFVRS--KQGLSHKHVGSLHAADAEMALRNARDVYTRRNEGVSIWVVPSSAITASDP 65 (95)
T ss_pred EEEEEec--CCCCCcceEeeeeCCCHHHHHHHHHHHhccccCCcEEEEeeHHHccccCh
Confidence 3445444 334455566888877888888888766 99998876654443
No 288
>PTZ00445 p36-lilke protein; Provisional
Probab=25.35 E-value=87 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=23.7
Q ss_pred cChHH-HHHHHHHHHhCCCEEEEEeCccc
Q 044384 15 GHVIP-LLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 15 gH~~p-~~~la~~La~rGh~VT~it~~~~ 42 (322)
+|..| +..++++|-++|..|+++|....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45666 88999999999999999998654
No 289
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.20 E-value=85 Score=25.28 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcChHH--HHHHHHHHHhCCCEEEEEeC
Q 044384 4 PHVLVMPGPAQGHVIP--LLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p--~~~la~~La~rGh~VT~it~ 39 (322)
.+++++.-++ -|= -+.+|+.|+++|++|+++..
T Consensus 26 ~~v~il~G~G---nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 26 PRVLILCGPG---NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp -EEEEEE-SS---HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CeEEEEECCC---CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 4566665443 222 45688999999999999544
No 290
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=25.10 E-value=3.8e+02 Score=21.90 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=31.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+.+.-.||.|-..-.++++...+.+|..|.++++..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 445557889999999999999999999999999974
No 291
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.96 E-value=1.5e+02 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCCCeEEEEc-CCCCcChH---HHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMP-GPAQGHVI---PLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p-~p~~gH~~---p~~~la~~La~rGh~VT~it~~~ 41 (322)
|.+.+|+++. .++.=|-+ ....+.++|.++||+|..+....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 4445777666 33345666 77899999999999999986543
No 292
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.87 E-value=3e+02 Score=20.57 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.3
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
|+++...++-.|-.-..-++..|..+|++|......-..+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 4788889999999999999999999999999988754433
No 293
>PRK06841 short chain dehydrogenase; Provisional
Probab=24.85 E-value=4.2e+02 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCc
Q 044384 20 LLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~~ 40 (322)
-.+++++|+++|++|.++...
T Consensus 28 G~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 28 GHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 578999999999998876654
No 294
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=24.66 E-value=1.7e+02 Score=27.40 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=32.6
Q ss_pred CeEEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p-~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+-++++| ..+.||--=+++++.++.++|.++.+++.-.
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 5677787 5678999999999999999999999998754
No 295
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.51 E-value=1.6e+02 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=30.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+.++-+-..|-..-+..+.++|.+||++|-.|-..+
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 455667778999999999999999999999886643
No 296
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=24.45 E-value=1.1e+02 Score=28.74 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|.+.||+++- .||-- +..+++|...+++||+|...+
T Consensus 8 ~~~~~vVIvG---gG~aG--l~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLG---TGWAG--AYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEEC---CCHHH--HHHHHHhCcCCCeEEEEcCCC
Confidence 3456888873 33332 335778876789999998654
No 297
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.30 E-value=1.3e+02 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
|...+++|+ |.||= -+.-|..||++|++|+++=
T Consensus 1 ~~~~dvvVI---GaG~~--GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVI---GAGLN--GLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEE---CCChh--HHHHHHHHHhCCCEEEEEE
Confidence 566678877 56653 3566778999999999984
No 298
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=24.23 E-value=1.7e+02 Score=24.49 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+.+.-.||.|...-.++++...+++|..|.++++.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35566789999999999999999999999999997
No 299
>PRK06128 oxidoreductase; Provisional
Probab=24.18 E-value=4.3e+02 Score=23.10 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 044384 20 LLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 20 ~~~la~~La~rGh~VT~it~ 39 (322)
-.+++++|+++|++|.+...
T Consensus 68 G~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 68 GRATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 36899999999999976543
No 300
>PRK04940 hypothetical protein; Provisional
Probab=24.16 E-value=2.1e+02 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=25.8
Q ss_pred ccEEEecCCc-chHHHHHHHcCCceEEEccchHH
Q 044384 108 IDCFIADGNM-GWSLEVAKKMNVRGGVFWSSSAA 140 (322)
Q Consensus 108 ~d~vI~D~~~-~~~~~vA~~l~iP~i~~~~~~~~ 140 (322)
..++|--.+. .|+.-+|.++|+|.|.+.|+--.
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 4566666654 58899999999999999887543
No 301
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=24.14 E-value=1.2e+02 Score=26.21 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=33.1
Q ss_pred EEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhHHh
Q 044384 6 VLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (322)
Q Consensus 6 v~~~p-~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~~~ 48 (322)
++++. -+|.|.......+|..++++|++|-++.+++. ..+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~ 44 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSD 44 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHH
Confidence 34444 56779999999999999999999999998764 34433
No 302
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=24.11 E-value=1.2e+02 Score=26.32 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=26.4
Q ss_pred eEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPG--PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~--p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|++++.. .|-|-.....+||-+|+..|++|-++=.+-
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di 39 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDI 39 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--T
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5555554 356999999999999999999999986654
No 303
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=23.73 E-value=1.5e+02 Score=25.61 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|++ -+.+.-=.|-|...-...||..||++|++|-+|=.++
T Consensus 1 m~~-iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 1 MAL-VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred Cce-EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 543 3344433455999999999999999999998885443
No 304
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.66 E-value=1.3e+02 Score=26.34 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+++++ |.|.+= ..+|..|+++||+||++...
T Consensus 2 ~I~Ii---G~G~~G--~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAIL---GAGAIG--GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEE---CCCHHH--HHHHHHHHhCCCeEEEEECC
Confidence 45555 344432 66888899999999999863
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=45 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCcccCCHHHHH---HHHHcc----eeeecCC
Q 044384 267 QPSSVIYAAFGSLTILDQVQFQ---EFVDAR----FWLRLPT 301 (322)
Q Consensus 267 ~~~sVIYvSfGS~~~l~~~q~~---ela~~l----lWv~r~~ 301 (322)
+++.|||+||+-...+.++-+. +|...- ||-.-.+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~ 468 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG 468 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5689999999999988887554 344444 8877664
No 306
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=23.40 E-value=1.6e+02 Score=26.05 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
+++.-=.|-|-......||..|+++|++|-+|=.++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 6777767779999999999999999999998865543
No 307
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=23.20 E-value=95 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
|+-.|.+++.+|..+|++|+++....
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46789999999999999999988766
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.01 E-value=2.2e+02 Score=21.68 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~ 45 (322)
+++++-.+|.|...-...++..++.+|..|.+++.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 36777889999999999999999999999999988755443
No 309
>PLN02240 UDP-glucose 4-epimerase
Probab=22.88 E-value=1.6e+02 Score=26.36 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
+..++++. .+.|.+ -.+|+++|+++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 33455554 344544 56788999999999998853
No 310
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.48 E-value=1.8e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=26.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
...|+...+.+.++.+.++|..|..+|.....
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 36688899999999899999999888876543
No 311
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=22.30 E-value=2.4e+02 Score=23.98 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=27.1
Q ss_pred CCccEEEecCCcchHHHHHHH-cCCceEEEccchHH
Q 044384 106 EKIDCFIADGNMGWSLEVAKK-MNVRGGVFWSSSAA 140 (322)
Q Consensus 106 ~~~d~vI~D~~~~~~~~vA~~-l~iP~i~~~~~~~~ 140 (322)
+.+|.+|.-.|...+...+++ +++|++.++-++..
T Consensus 68 ~GvdaiiIaCf~DPgl~~~Re~~~~PviGi~eAsv~ 103 (230)
T COG4126 68 QGVDAIIIACFSDPGLAAARERAAIPVIGICEASVL 103 (230)
T ss_pred cCCcEEEEEecCChHHHHHHHHhCCCceehhHHHHH
Confidence 459999999998877765555 79999988766543
No 312
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.28 E-value=1.8e+02 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCE
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFR 33 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~ 33 (322)
-|++.-.|..|-..-..+|.++|++||+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 36667799999999999999999999975
No 313
>PRK10037 cell division protein; Provisional
Probab=22.26 E-value=1.7e+02 Score=25.08 Aligned_cols=38 Identities=11% Similarity=-0.071 Sum_probs=30.1
Q ss_pred eEEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 5 HVLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 5 hv~~~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
-|.+.-.-| -|-..-...||..|+++|++|-+|=.+++
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 356666554 49999999999999999999999855543
No 314
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.05 E-value=1.5e+02 Score=27.74 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
...+|++.-. |.+...=...+.++|.++|++|.++.|....+.+
T Consensus 5 ~~k~IllgvT-Gsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 5 AGKRIVLGVS-GGIAAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCeEEEEEe-CHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 3456665544 4445667789999999999999999987544433
No 315
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.99 E-value=1.7e+02 Score=27.78 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=33.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccch
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~ 43 (322)
.++++..+|.|-......||..|.++|+.|.+++.+...
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 366777889999999999999999999999999887543
No 316
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.92 E-value=2.2e+02 Score=25.00 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
+++++. +..=+.|++.+++.|+++|++|+++-......
T Consensus 100 ~~llIa--GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 100 TVVCVG--GGVGIAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred eEEEEe--CcCcHHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 566554 55558999999999999999999887655443
No 317
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.91 E-value=2.4e+02 Score=22.38 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.+|+++ |-+|-+....++..|+.-|.+|+++++..
T Consensus 3 l~i~~v---GD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYV---GDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEEEE---SSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CEEEEE---CCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 355655 34899999999999999999999999876
No 318
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.76 E-value=2.5e+02 Score=20.10 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
|++.+|+++...|.|=-.-...+-+.+.++|.++.+....
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 5667899999887753344455555556799988766543
No 319
>PRK13604 luxD acyl transferase; Provisional
Probab=21.74 E-value=2.1e+02 Score=25.72 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~i 37 (322)
..+++...-.++..-+..+|+.|+++|+.|..+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345555444566666999999999999887644
No 320
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=21.64 E-value=2e+02 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~ 44 (322)
+++++--.|.|.-.-...++.+|+..|++|-++..++...
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 4888888888999999999999999999999998876543
No 321
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=21.51 E-value=4.5e+02 Score=21.44 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=47.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccchhh-HHhhhccCCCCCCCeEEEecCCCCCCCCCCCCHHHHH
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKR-VVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLI 82 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~r--Gh~VT~it~~~~~~~-~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 82 (322)
++-+-..+-|=++...+|+++|.++ |++|.+-++...... ..+.+. ..+....+|-.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D-------------- 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD-------------- 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S--------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc--------------
Confidence 4445556678899999999999987 788877665443332 222210 12333334421
Q ss_pred HHHHHHchHHHHHHHHHHhccCCCCcc-EEEecCCc-chHHHHHHHcCCceEEEcc
Q 044384 83 EKFLQVMPRKLEELIEEINSREDEKID-CFIADGNM-GWSLEVAKKMNVRGGVFWS 136 (322)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d-~vI~D~~~-~~~~~vA~~l~iP~i~~~~ 136 (322)
....++..++.+ +|| +|+++.=. +-....|++.|||.+.+..
T Consensus 83 ------~~~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------FPWAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------SHHHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------CHHHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 122355667664 356 55555433 4456788999999987753
No 322
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.50 E-value=2e+02 Score=26.35 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=21.5
Q ss_pred CCccEEEecCCcch----------HHHHHHHcCCceEEEc
Q 044384 106 EKIDCFIADGNMGW----------SLEVAKKMNVRGGVFW 135 (322)
Q Consensus 106 ~~~d~vI~D~~~~~----------~~~vA~~l~iP~i~~~ 135 (322)
.+||++|+-..+.. +..+.++++||.++-.
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 57999999977532 1246678999988643
No 323
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.48 E-value=1.9e+02 Score=20.02 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.1
Q ss_pred eEEEEcCCCC--cChHHHHHHHHHHHhCCCEEEEEe
Q 044384 5 HVLVMPGPAQ--GHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 5 hv~~~p~p~~--gH~~p~~~la~~La~rGh~VT~it 38 (322)
+++++|.... .+..-...++..|.+.|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5888886653 466678888889988999998743
No 324
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.39 E-value=5.6e+02 Score=22.47 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
.+++++-..+.|-..-+..++..+..+|+.|-+++....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 367778778889999999999999989999999998754
No 325
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.37 E-value=1.9e+02 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCCcChHH-HHHHHHHHHhCCCEEEEEeC
Q 044384 1 MSSPHVLVMPGPAQGHVIP-LLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p-~~~la~~La~rGh~VT~it~ 39 (322)
|+..+++++..|+.++... +..+.+.|.++|++|.+..+
T Consensus 1 ~~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 7777899999987766543 45556668899999887654
No 326
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.37 E-value=1.5e+02 Score=22.85 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcChHHHHHHHHHHHhCCC-EEEEEeC
Q 044384 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNT 39 (322)
Q Consensus 3 ~~hv~~~p~p~~gH~~p~~~la~~La~rGh-~VT~it~ 39 (322)
+.+++.++....+|.--+..++++|.++|. ++.++..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 346788888888999999999999999886 5666655
No 327
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.36 E-value=76 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=17.3
Q ss_pred cEEEEecCCcccCCHHHHHHHHHcc
Q 044384 270 SVIYAAFGSLTILDQVQFQEFVDAR 294 (322)
Q Consensus 270 sVIYvSfGS~~~l~~~q~~ela~~l 294 (322)
+++.++|||...-..+.++.++..+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l 26 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKV 26 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6999999998763444555555554
No 328
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.33 E-value=2.1e+02 Score=24.70 Aligned_cols=23 Identities=17% Similarity=-0.065 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCc
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~ 40 (322)
---.+++++|+++|++|+.+...
T Consensus 15 giG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 15 GFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred hHHHHHHHHHHhCcCEEEEEeCC
Confidence 34688999999999999987653
No 329
>PRK08181 transposase; Validated
Probab=21.33 E-value=1.9e+02 Score=25.44 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
+++++-.+|.|-..-...+++++.++|+.|-+++..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 567776777777667777777777778777776653
No 330
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.32 E-value=1.6e+02 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=19.4
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 044384 106 EKIDCFIADGNMGWSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 106 ~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~ 135 (322)
.+||+||.+. ....+|+++|+|++.+.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 4588888876 35567888888877653
No 331
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=21.31 E-value=1.6e+02 Score=26.46 Aligned_cols=32 Identities=25% Similarity=0.054 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 4 ~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
+++++.- +.|.+ -.+++++|+++||+|+.+.-
T Consensus 5 k~ilItG--atG~I--G~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTG--HTGFK--GSWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CEEEEEC--CCChh--HHHHHHHHHHCCCEEEEEeC
Confidence 4555543 33432 37899999999999987754
No 332
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=21.30 E-value=1.9e+02 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=22.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
.+++-.-..|-..-+..+|.+|+++|+.|.+.-
T Consensus 16 ~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD 48 (218)
T PF01738_consen 16 AVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPD 48 (218)
T ss_dssp EEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-
T ss_pred EEEEEcCCCCCchHHHHHHHHHHhcCCCEEecc
Confidence 334444566877889999999999997777543
No 333
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=21.23 E-value=1.9e+02 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~ 40 (322)
-+.++-.++.|-..-...|.++|.++|++|-+|-..
T Consensus 207 ~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 207 LLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 466777889999999999999999999999988754
No 334
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=21.17 E-value=2e+02 Score=23.86 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=20.1
Q ss_pred CCccEEEec----CCcchHHHHHHHc-----CCceEEEccch
Q 044384 106 EKIDCFIAD----GNMGWSLEVAKKM-----NVRGGVFWSSS 138 (322)
Q Consensus 106 ~~~d~vI~D----~~~~~~~~vA~~l-----~iP~i~~~~~~ 138 (322)
.+|||||.| .-.+.+.++.+++ +++.++++...
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~ 87 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAIA 87 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999 3234444555543 45667775543
No 335
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.01 E-value=53 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCEEEEEe
Q 044384 19 PLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 19 p~~~la~~La~rGh~VT~it 38 (322)
.-.+|...|.++|++||=.|
T Consensus 21 sQ~eL~~~L~~~Gi~vTQaT 40 (70)
T PF01316_consen 21 SQEELVELLEEEGIEVTQAT 40 (70)
T ss_dssp SHHHHHHHHHHTT-T--HHH
T ss_pred CHHHHHHHHHHcCCCcchhH
Confidence 34578999999999988444
No 336
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=20.99 E-value=1.7e+02 Score=23.19 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 11 ~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
-+|.|-......||..|+++|++|.++=.+.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4677999999999999999999999987654
No 337
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=20.88 E-value=1.2e+02 Score=23.65 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 16 HVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 16 H~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
.+-..+-++..|-++||+||+..++...+.+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3444677888999999999999887554444
No 338
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.88 E-value=1.8e+02 Score=20.83 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=25.3
Q ss_pred ccE--EEecCCcc---hH-HHHHHHcCCceEEEccchHHHHH
Q 044384 108 IDC--FIADGNMG---WS-LEVAKKMNVRGGVFWSSSAASVA 143 (322)
Q Consensus 108 ~d~--vI~D~~~~---~~-~~vA~~l~iP~i~~~~~~~~~~~ 143 (322)
.|+ +++|.... |. -..|++.|+|++..-..+...+.
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLE 90 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 454 47787753 33 37899999999988866666543
No 339
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.84 E-value=1.6e+02 Score=28.67 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=19.7
Q ss_pred CCccEEEecCCcchHHHHHHHcCCceEEEc
Q 044384 106 EKIDCFIADGNMGWSLEVAKKMNVRGGVFW 135 (322)
Q Consensus 106 ~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~ 135 (322)
.+||+||.+. +...+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4688888886 34456888999987654
No 340
>PRK13236 nitrogenase reductase; Reviewed
Probab=20.83 E-value=1.4e+02 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 12 p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
.|-|-.+....||..|+++|++|-++=...
T Consensus 15 GGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 15 GGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 345899999999999999999999985443
No 341
>COG3460 Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.78 E-value=90 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=32.4
Q ss_pred cccccCCCCCCcEEEEecCCcccCCHHHHHHHHHcc---------eeeecCCCCCC
Q 044384 259 CLKWLDQQQPSSVIYAAFGSLTILDQVQFQEFVDAR---------FWLRLPTTRMS 305 (322)
Q Consensus 259 ~~~wLd~~~~~sVIYvSfGS~~~l~~~q~~ela~~l---------lWv~r~~~~~~ 305 (322)
++-|..+ .+|.-|=--||.-.-++++.-..|.-- |||+|......
T Consensus 13 wEVF~r~--~~~~p~q~vgSlhA~d~emAL~~Ardvf~RR~~~vsiWvVk~s~I~a 66 (117)
T COG3460 13 WEVFIRG--SQGLPHQHVGSLHAPDEEMALMMARDVFTRREEGVSIWVVKSSDIRA 66 (117)
T ss_pred eeEEeec--cCCCccceeeeeecCCHHHHHHHHHHHhhccCcCceEEEeehhhhhc
Confidence 4445544 456777888998888888887777544 99999976543
No 342
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.76 E-value=1.7e+02 Score=27.25 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 044384 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (322)
Q Consensus 2 ~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~~~~~~ 46 (322)
+..||++.- .|.+...-...+.++|.++|++|+++.+..-.+.+
T Consensus 2 ~~k~Illgi-TGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 2 ENKKILLGV-TGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCCEEEEEE-eCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 344666554 45566677899999999999999999987554433
No 343
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.69 E-value=2.7e+02 Score=19.56 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=21.7
Q ss_pred CCccEEEecCCcc--hHHHHHHH----c-CCceEEEccchH
Q 044384 106 EKIDCFIADGNMG--WSLEVAKK----M-NVRGGVFWSSSA 139 (322)
Q Consensus 106 ~~~d~vI~D~~~~--~~~~vA~~----l-~iP~i~~~~~~~ 139 (322)
.+||+||.|.-++ .+..+++. . ++|.|++....-
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred cCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 5699999997654 33344333 2 577777765544
No 344
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.33 E-value=1.8e+02 Score=23.37 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccCCCCccEEEecCCcc-h-HHHHHHHcCCceEEEcc
Q 044384 91 RKLEELIEEINSREDEKIDCFIADGNMG-W-SLEVAKKMNVRGGVFWS 136 (322)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~-~~~vA~~l~iP~i~~~~ 136 (322)
..++.+++ .+||+||+..... . ....-++.|||.+.+..
T Consensus 60 ~n~E~ll~-------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVA-------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhc-------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 44556554 4699999865442 2 44556778999887753
No 345
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=20.26 E-value=1.3e+02 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=21.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
=+++|--|.||= +..||++||+|+=+=.
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEES
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEec
Confidence 467899999986 5568899999987643
No 346
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=20.12 E-value=1.7e+02 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 044384 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (322)
Q Consensus 6 v~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~ 39 (322)
+.++-.++.|-..-...|+++|.++|++|-++-+
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4556567889999999999999999999999853
No 347
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=20.11 E-value=1.4e+02 Score=28.62 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCCcEEEEecCCcccCCHHHHHHHHHcc-------eeeecCCC
Q 044384 267 QPSSVIYAAFGSLTILDQVQFQEFVDAR-------FWLRLPTT 302 (322)
Q Consensus 267 ~~~sVIYvSfGS~~~l~~~q~~ela~~l-------lWv~r~~~ 302 (322)
+++.|+|.||.+...++++.++..++-| ||.++.+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~ 324 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA 324 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH
Confidence 4678999999999999999888777766 99998754
No 348
>PRK09126 hypothetical protein; Provisional
Probab=20.10 E-value=1.7e+02 Score=26.78 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 044384 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (322)
Q Consensus 1 m~~~hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it 38 (322)
|.+..|+++ |.| ..-+.+|..|+++|++|+++=
T Consensus 1 ~~~~dviIv---GgG--~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVV---GAG--PAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred CCcccEEEE---CcC--HHHHHHHHHHHhCCCcEEEEe
Confidence 445566665 333 445778888999999999984
No 349
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.10 E-value=1.2e+02 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCc
Q 044384 18 IPLLEFSQCLAKHGFRVTFVNTD 40 (322)
Q Consensus 18 ~p~~~la~~La~rGh~VT~it~~ 40 (322)
+.-..+++.|+++||+|+++...
T Consensus 11 ~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 11 NMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEeeccc
Confidence 34468999999999999988643
No 350
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=20.06 E-value=1.6e+02 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=28.4
Q ss_pred EEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 6 VLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 6 v~~~p~p~-~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
+++++..- ..++.--.+|+.+||++||+|.++.+...
T Consensus 7 ~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~ 44 (373)
T cd04950 7 ILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGL 44 (373)
T ss_pred EEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCc
Confidence 44444322 36788889999999999999999998754
No 351
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.04 E-value=1.8e+02 Score=28.35 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhccCCCCccEEEecCCcchHHHHHHHcCCceEEEccc
Q 044384 90 PRKLEELIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGGVFWSS 137 (322)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l~iP~i~~~~~ 137 (322)
...++..++++.+ ..+++||.|.. +...|+++|++.|.+.+.
T Consensus 131 ~~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3567777777765 46999999974 568999999999988764
No 352
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.03 E-value=1.1e+02 Score=25.05 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 044384 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (322)
Q Consensus 5 hv~~~p~p~~gH~~p~~~la~~La~rGh~VT~it~~~ 41 (322)
+|.++ |.||+ -+.+|..||++||+|+-+-...
T Consensus 2 ~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVI---GLGYV--GLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCCh
Confidence 45555 66776 4667778999999999886543
No 353
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=20.01 E-value=1.1e+02 Score=26.93 Aligned_cols=30 Identities=13% Similarity=-0.114 Sum_probs=25.3
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 044384 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (322)
Q Consensus 13 ~~gH~~p~~~la~~La~rGh~VT~it~~~~ 42 (322)
..|--.-+..|+++|+++||+|++++....
T Consensus 14 ~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 14 PTGIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 456777789999999999999999988644
Done!