Query 044385
Match_columns 132
No_of_seqs 109 out of 321
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 3.5E-36 7.6E-41 211.9 5.1 84 48-132 1-85 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 3.9E-37 8.4E-42 216.9 0.3 84 47-131 2-85 (85)
3 smart00499 AAI Plant lipid tra 96.7 0.00042 9E-09 44.5 0.2 74 50-131 2-79 (79)
4 PF14368 LTP_2: Probable lipid 96.5 0.00016 3.4E-09 49.4 -2.9 57 72-131 39-96 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 95.9 0.00098 2.1E-08 44.8 -1.6 62 54-127 4-65 (66)
6 cd04660 nsLTP_like nsLTP_like: 95.6 0.002 4.3E-08 43.3 -1.0 68 54-131 6-73 (73)
7 PF07172 GRP: Glycine rich pro 94.4 0.035 7.5E-07 39.8 2.5 25 1-25 1-25 (95)
8 PF00234 Tryp_alpha_amyl: Prot 93.2 0.0057 1.2E-07 41.5 -3.2 67 54-131 13-90 (90)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 92.7 0.034 7.3E-07 35.5 0.1 59 57-122 2-62 (63)
10 cd01960 nsLTP1 nsLTP1: Non-spe 87.5 0.13 2.9E-06 35.2 -0.5 68 53-126 7-79 (89)
11 PF03058 Sar8_2: Sar8.2 family 36.7 34 0.00074 24.8 2.4 13 1-17 1-13 (93)
12 PF07803 GSG-1: GSG1-like prot 27.0 1.1E+02 0.0023 23.1 3.8 24 1-24 2-25 (118)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=3.5e-36 Score=211.92 Aligned_cols=84 Identities=76% Similarity=1.413 Sum_probs=82.2
Q ss_pred CCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhccc-ceecccchhhhhhhhcCCCCC
Q 044385 48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILG-INLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 48 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlg-i~~~ipv~l~~lln~CGk~~P 126 (132)
+||+|++||++|+||| |++++.+|.+++++||++|+||+|+|||+|||+|+|+|++| |++|+|+++++++|.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 59999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCccC
Q 044385 127 RGFQCA 132 (132)
Q Consensus 127 ~gf~C~ 132 (132)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=3.9e-37 Score=216.93 Aligned_cols=84 Identities=74% Similarity=1.318 Sum_probs=82.0
Q ss_pred CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385 47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P 126 (132)
++||+|++||++|+|||+ +++..+|+++.++||++|+||+|+|||+|||||||+|++||++|+|+++++++|.|||++|
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence 589999999999999996 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 044385 127 RGFQC 131 (132)
Q Consensus 127 ~gf~C 131 (132)
+||+|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 99998
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.73 E-value=0.00042 Score=44.53 Aligned_cols=74 Identities=35% Similarity=0.674 Sum_probs=50.5
Q ss_pred CcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhccccee----cccchhhhhhhhcCCCC
Q 044385 50 PRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINL----NIPLSLSLLLNVCSKSV 125 (132)
Q Consensus 50 P~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~----~ipv~l~~lln~CGk~~ 125 (132)
.....++..|.+.+.+.. ....+.++||..++++. ...|+|.+++....++.. + ......|.+.||...
T Consensus 2 ~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~-~~~a~~lp~~C~~~~ 74 (79)
T smart00499 2 GQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVN-AQNAASLPSACGVPP 74 (79)
T ss_pred hhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhh-HHHHHhhHHhcCCCC
Confidence 334445557777764211 12456688999999887 677999999988766532 3 344557889999998
Q ss_pred CCCCcc
Q 044385 126 PRGFQC 131 (132)
Q Consensus 126 P~gf~C 131 (132)
|. +.|
T Consensus 75 ~~-~~C 79 (79)
T smart00499 75 PY-TDC 79 (79)
T ss_pred CC-CCC
Confidence 75 554
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.55 E-value=0.00016 Score=49.41 Aligned_cols=57 Identities=26% Similarity=0.697 Sum_probs=34.5
Q ss_pred CCCCCCCCCccccccccchhhhHHHHHhhhhc-ccceecccchhhhhhhhcCCCCCCCCcc
Q 044385 72 GTPPVQPCCTLIQGLADLEAAVCLCTAIKANI-LGINLNIPLSLSLLLNVCSKSVPRGFQC 131 (132)
Q Consensus 72 g~p~~~~CC~li~gL~d~dAa~CLC~aika~v-lgi~~~ipv~l~~lln~CGk~~P~gf~C 131 (132)
+..|.++||..++.+.+.| ..|||..++... .++++|..-.+ .|...||...|. ++|
T Consensus 39 ~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~in~~~a~-~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQAD-PPCLCQLLNSPGAPGFGINVTRAL-ALPAACGVPVPP-SKC 96 (96)
T ss_dssp -----HHHHHHHCC----H-CCHHHCCCC-CCHCHHCCTCHHHH-HHHHHCTSS-S-----
T ss_pred CCCCCHHHHHHHHHhccCC-CCCHHHhcCccccccCCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence 3567788999999997744 899999999987 55566655544 678999999998 887
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=95.88 E-value=0.00098 Score=44.76 Aligned_cols=62 Identities=27% Similarity=0.568 Sum_probs=46.5
Q ss_pred ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCC
Q 044385 54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPR 127 (132)
Q Consensus 54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~ 127 (132)
.+|..|...+. .|.+|.++||..++. +-.|||.-+|...++.-+|.+-+. -|.+.||..+|.
T Consensus 4 ~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~-~l~~~Cgv~~P~ 65 (66)
T cd01959 4 TQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNAR-KVLAACGVPYPN 65 (66)
T ss_pred hhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHH-HHHHHcCCCCCC
Confidence 47888988753 256888899999996 237999999876666446666655 578899999864
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=95.63 E-value=0.002 Score=43.27 Aligned_cols=68 Identities=24% Similarity=0.512 Sum_probs=46.7
Q ss_pred ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCCCCcc
Q 044385 54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQC 131 (132)
Q Consensus 54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~gf~C 131 (132)
.+|..|...+.+ ..-..++.+.||+-|+.+ |. .|+|..++...+.+ +|..- ...|...||..+|. ++|
T Consensus 6 ~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~-i~~~~-a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 6 DLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI-IDPDK-AVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred HHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc-cCHHH-HHHHHHHcCCCCCC-CCC
Confidence 467778887631 100123567899999974 22 39999998876543 55444 45789999999999 988
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.36 E-value=0.035 Score=39.82 Aligned_cols=25 Identities=40% Similarity=0.380 Sum_probs=17.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhc
Q 044385 1 MGSKTSASLALFLAVNILFFALVTA 25 (132)
Q Consensus 1 MAsk~~~~~al~l~lnll~f~~~s~ 25 (132)
||||+...+++||++.||++|-|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999744466666666666666664
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=93.20 E-value=0.0057 Score=41.52 Aligned_cols=67 Identities=27% Similarity=0.571 Sum_probs=48.3
Q ss_pred ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccc-----------eecccchhhhhhhhcC
Q 044385 54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGI-----------NLNIPLSLSLLLNVCS 122 (132)
Q Consensus 54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi-----------~~~ipv~l~~lln~CG 122 (132)
..+..|...+.+-. ..+.++||.-|++| -..|.|.+||..+.++ .++.. ....|.+.||
T Consensus 13 ~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred ccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence 55777777764211 13456799999988 8899999999988773 34443 3457889999
Q ss_pred CCCCCCCcc
Q 044385 123 KSVPRGFQC 131 (132)
Q Consensus 123 k~~P~gf~C 131 (132)
..+|. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 665
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=92.75 E-value=0.034 Score=35.49 Aligned_cols=59 Identities=25% Similarity=0.549 Sum_probs=37.1
Q ss_pred cchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccc-ee-cccchhhhhhhhcC
Q 044385 57 GVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGI-NL-NIPLSLSLLLNVCS 122 (132)
Q Consensus 57 ~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi-~~-~ipv~l~~lln~CG 122 (132)
-.|.+.+.| . +..+.++||.-++.+.+.| ..|||..+|...... .+ |. -....|...||
T Consensus 2 ~~C~~y~~~---~--~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg 62 (63)
T cd00010 2 APCLSYLTG---G--ATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA-TRALALPAACG 62 (63)
T ss_pred cchHHHHcC---C--CCCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence 346666531 1 1356678999999887764 469999999865432 11 22 23345667776
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=87.47 E-value=0.13 Score=35.22 Aligned_cols=68 Identities=29% Similarity=0.542 Sum_probs=44.0
Q ss_pred cccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhcccce-ecccchhhhhhhhcCCCCC
Q 044385 53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILGIN-LNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlgi~-~~ipv~l~~lln~CGk~~P 126 (132)
..+|..|.+.+.|- +..|..+||.-++.|.+. +.-.|+|.-+|....++. +|...+ ..|-..||-..|
T Consensus 7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a-~~LP~~C~v~~~ 79 (89)
T cd01960 7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRA-AGLPGKCGVSIP 79 (89)
T ss_pred HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHH-HhChHhcccCCC
Confidence 34677888887531 135667899999998654 223566666777666554 554333 467888988754
No 11
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=36.74 E-value=34 Score=24.79 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=9.5
Q ss_pred CCCcchhHHHHHHHHHH
Q 044385 1 MGSKTSASLALFLAVNI 17 (132)
Q Consensus 1 MAsk~~~~~al~l~lnl 17 (132)
|++|+ -+||-|+|
T Consensus 1 M~~Kt----nlfl~lSL 13 (93)
T PF03058_consen 1 MVSKT----NLFLCLSL 13 (93)
T ss_pred Ccchh----hhHHHHHH
Confidence 89985 56677776
No 12
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=26.96 E-value=1.1e+02 Score=23.12 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=11.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHh
Q 044385 1 MGSKTSASLALFLAVNILFFALVT 24 (132)
Q Consensus 1 MAsk~~~~~al~l~lnll~f~~~s 24 (132)
|.++.++.++++|.+--|+|+.++
T Consensus 2 ~sr~~Ra~Ls~~ln~LAL~~S~tA 25 (118)
T PF07803_consen 2 MSRRQRALLSLILNLLALAFSTTA 25 (118)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444443
Done!