Query 044385
Match_columns 132
No_of_seqs 109 out of 321
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 3.4E-31 1.2E-35 183.8 1.3 73 47-132 6-78 (80)
2 1l6h_A LTP2, non-specific lipi 96.0 0.00071 2.4E-08 44.4 -1.1 60 55-126 7-66 (69)
3 1n89_A Lipid transfer protein; 95.9 0.00066 2.3E-08 44.3 -1.4 60 55-126 6-65 (67)
4 2rkn_A DIR1 protein, AT5G48485 95.3 0.0029 9.9E-08 41.9 -0.2 70 47-127 3-75 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 92.9 0.011 3.7E-07 40.4 -1.2 70 49-126 3-78 (91)
6 2alg_A Non-specific lipid tran 92.2 0.0062 2.1E-07 41.7 -3.2 67 52-126 7-79 (92)
7 1afh_A Maize nonspecific lipid 87.3 0.043 1.5E-06 37.5 -2.1 71 49-126 4-80 (93)
8 2ljo_A Non-specific lipid-tran 87.2 0.068 2.3E-06 36.8 -1.2 71 54-131 9-88 (93)
9 1bwo_A NS-LTP1, nonspecific li 87.0 0.03 1E-06 38.2 -3.1 66 53-126 7-78 (90)
10 1t12_A LTP 1, nonspecific lipi 82.8 0.12 4.1E-06 35.2 -1.6 69 49-126 4-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=3.4e-31 Score=183.81 Aligned_cols=73 Identities=51% Similarity=1.060 Sum_probs=66.6
Q ss_pred CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385 47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P 126 (132)
++|| ||++|+|||+|.+ | +.++|||+|+||+|+|||+||||||| +||| +|+|+++++|+|.|||++|
T Consensus 6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lgi-lnlpv~L~llln~Cgk~~P 72 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALGI-LNLNRNLQLILNSCGRSYP 72 (80)
T ss_dssp CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHTC-SCHHHHHHHHHHHTTCSSC
T ss_pred CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccce-eecChhHHHHHHHhCCcCc
Confidence 4799 8999999997543 2 66789999999999999999999999 4899 9999999999999999999
Q ss_pred CCCccC
Q 044385 127 RGFQCA 132 (132)
Q Consensus 127 ~gf~C~ 132 (132)
+||+|+
T Consensus 73 ~gF~C~ 78 (80)
T 1hyp_A 73 SNATCP 78 (80)
T ss_dssp CCCCCS
T ss_pred CCCCCC
Confidence 999996
No 2
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=95.95 E-value=0.00071 Score=44.38 Aligned_cols=60 Identities=25% Similarity=0.590 Sum_probs=44.6
Q ss_pred cccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385 55 KLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 55 kL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P 126 (132)
+|..|.+.+. -|.++..+||.-+++ ...|||..+|...++..+|.+.+. .|...||..+|
T Consensus 7 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P 66 (69)
T 1l6h_A 7 QLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNAR-KAVSSCGIALP 66 (69)
T ss_dssp THHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGG-GCCCCCSSCSC
T ss_pred hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence 5788888763 134567789999984 489999999876555456666665 47889999987
No 3
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=95.91 E-value=0.00066 Score=44.29 Aligned_cols=60 Identities=28% Similarity=0.593 Sum_probs=44.3
Q ss_pred cccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385 55 KLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 55 kL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P 126 (132)
+|..|.+.+. -|.++..+||.-+++ ...|+|..+|...++..+|.+.+. .|...||..+|
T Consensus 6 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P 65 (67)
T 1n89_A 6 QLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHAR-DTLTSCGLAVP 65 (67)
T ss_dssp TTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHH-HHHHHHTSCCS
T ss_pred hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence 5788888763 134567789999984 478999999876665445655555 57889999987
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.26 E-value=0.0029 Score=41.90 Aligned_cols=70 Identities=29% Similarity=0.521 Sum_probs=47.9
Q ss_pred CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhh---hhcccceecccchhhhhhhhcCC
Q 044385 47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIK---ANILGINLNIPLSLSLLLNVCSK 123 (132)
Q Consensus 47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aik---a~vlgi~~~ipv~l~~lln~CGk 123 (132)
..|-.+..+|..|.+.+.+ .. ..++...||.-+++ +| -.|||..++ +.-+|| |...++ .|...||.
T Consensus 3 ~~C~~~~~~L~pC~~yv~~---~~-~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~-~LP~~Cgv 71 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK---EN-PTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELAS-ALPKQCGL 71 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS---SS-CCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHH-HHHHHTTC
T ss_pred chHHhHHHhHhhCHHHHcC---CC-CCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHH-HHHHHcCC
Confidence 3577777788889888742 00 13566689999998 33 389999888 343454 444444 58889999
Q ss_pred CCCC
Q 044385 124 SVPR 127 (132)
Q Consensus 124 ~~P~ 127 (132)
.+|.
T Consensus 72 ~~p~ 75 (77)
T 2rkn_A 72 ANAP 75 (77)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=92.89 E-value=0.011 Score=40.44 Aligned_cols=70 Identities=24% Similarity=0.473 Sum_probs=45.3
Q ss_pred CCcccccccchhhhcccccccccCCCCCCCCCccccccccc-----h-hhhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385 49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL-----E-AAVCLCTAIKANILGINLNIPLSLSLLLNVCS 122 (132)
Q Consensus 49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-Aa~CLC~aika~vlgi~~~ipv~l~~lln~CG 122 (132)
|-....+|..|.+.+.| |.++..+||.-+++|.+. | -+.|+|..-.+.-++ .+|...+. .|...||
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A~-~LP~~Cg 74 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAE-ALPGKCG 74 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHHH-HHHHHHT
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHHH-HHHHHcC
Confidence 55555678888888742 233666899999988543 3 268999722223332 45555554 5888999
Q ss_pred CCCC
Q 044385 123 KSVP 126 (132)
Q Consensus 123 k~~P 126 (132)
..+|
T Consensus 75 v~~p 78 (91)
T 1siy_A 75 VNIP 78 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=92.16 E-value=0.0062 Score=41.73 Aligned_cols=67 Identities=24% Similarity=0.456 Sum_probs=45.2
Q ss_pred ccccccchhhhcccccccccCCCCCCCCCccccccccc-----h-hhhHHHHHhhhhcccceecccchhhhhhhhcCCCC
Q 044385 52 DALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL-----E-AAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSV 125 (132)
Q Consensus 52 d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-Aa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~ 125 (132)
...+|..|.+.+.| |.++..+||.-+++|... | -+.|||...++.-++ .+|...+. .|...||-.+
T Consensus 7 v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~-~LP~~Cgv~~ 78 (92)
T 2alg_A 7 VSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAA-ALPGKCGVSI 78 (92)
T ss_dssp HHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHH-HHHHHTTCCC
T ss_pred HHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHH-HHHHHcCCCC
Confidence 34467888887642 234555899999987632 2 268999977666663 45544554 5888999987
Q ss_pred C
Q 044385 126 P 126 (132)
Q Consensus 126 P 126 (132)
|
T Consensus 79 p 79 (92)
T 2alg_A 79 P 79 (92)
T ss_dssp S
T ss_pred C
Confidence 6
No 7
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=87.29 E-value=0.043 Score=37.51 Aligned_cols=71 Identities=27% Similarity=0.518 Sum_probs=45.2
Q ss_pred CCcccccccchhhhcccccccccCCCCCCCCCcccccccc---chh---hhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385 49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLAD---LEA---AVCLCTAIKANILGINLNIPLSLSLLLNVCS 122 (132)
Q Consensus 49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d---~dA---a~CLC~aika~vlgi~~~ipv~l~~lln~CG 122 (132)
|-....+|..|.+.+.| . +..+..+||.-+++|.+ ..+ +.|+|....+.-++ .+|...++ .|...||
T Consensus 4 C~~v~~~L~pCl~y~~~----~-~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~-~LP~~C~ 76 (93)
T 1afh_A 4 CGQVASAIAPCISYARG----Q-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAA-SIPSKCG 76 (93)
T ss_dssp SHHHHHHHGGGHHHHTT----S-CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHH-HHHHHHH
T ss_pred hHHHHHhccCcHHHHcC----C-CCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHH-HHHHHcC
Confidence 44445578888888742 1 23455679999998853 222 78999765555452 34444444 5788999
Q ss_pred CCCC
Q 044385 123 KSVP 126 (132)
Q Consensus 123 k~~P 126 (132)
-.+|
T Consensus 77 v~~p 80 (93)
T 1afh_A 77 VSIP 80 (93)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8766
No 8
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=87.22 E-value=0.068 Score=36.85 Aligned_cols=71 Identities=24% Similarity=0.478 Sum_probs=45.4
Q ss_pred ccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhccc-ceecccchhhhhhhhcCCCCC--
Q 044385 54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILG-INLNIPLSLSLLLNVCSKSVP-- 126 (132)
Q Consensus 54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlg-i~~~ipv~l~~lln~CGk~~P-- 126 (132)
..|.-|.+.+.| |..+..+||.-+++|.+. +.-.|+|..+|...-+ ..+|..-+ ..|-..||-++|
T Consensus 9 ~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a-~~LP~~CgV~~p~~ 81 (93)
T 2ljo_A 9 SDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNA-AALPGKCGVNIPYK 81 (93)
T ss_dssp HHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHH-HHHHHHHTCCCSSC
T ss_pred HHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHH-HhhhHhcCCCCCCC
Confidence 355667666532 234566899988877553 2347889888875532 23454444 358889999988
Q ss_pred --CCCcc
Q 044385 127 --RGFQC 131 (132)
Q Consensus 127 --~gf~C 131 (132)
..+.|
T Consensus 82 Is~~~dC 88 (93)
T 2ljo_A 82 ISTTTNC 88 (93)
T ss_dssp CSTTCCG
T ss_pred CCCCCCC
Confidence 55666
No 9
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=86.97 E-value=0.03 Score=38.18 Aligned_cols=66 Identities=23% Similarity=0.435 Sum_probs=41.7
Q ss_pred cccccchhhhcccccccccCCCCCCCCCccccccccc---h---hhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385 53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL---E---AAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP 126 (132)
Q Consensus 53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~---d---Aa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P 126 (132)
..+|..|.+.+.| |.++..+||.-+++|.+. . -+.|+|..-.+.-++ .+|...+. .|...||-.+|
T Consensus 7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~v~~p 78 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNAR-SIPPKCGVNLP 78 (90)
T ss_dssp HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHH-THHHHHTCCCS
T ss_pred HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHH-HHHHHcCCCCC
Confidence 4467788887642 223666899999987632 1 278999433333332 34544444 57889999866
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=82.76 E-value=0.12 Score=35.25 Aligned_cols=69 Identities=22% Similarity=0.474 Sum_probs=43.0
Q ss_pred CCcccccccchhhhcccccccccCCCCCCCCCccccccccch------hhhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385 49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLE------AAVCLCTAIKANILGINLNIPLSLSLLLNVCS 122 (132)
Q Consensus 49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~d------Aa~CLC~aika~vlgi~~~ipv~l~~lln~CG 122 (132)
|-....+|..|.+.+.| |.++. .||.-+++|...- -+.|+|..--++-++ .+|...++ .|...||
T Consensus 4 C~~v~~~L~pCl~y~~~------~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~ 74 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLRN------TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAA-GLPSTCG 74 (91)
T ss_dssp HHHHHHHTHHHHHHHTT------SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHH-HHHHHTT
T ss_pred hHHHHHhccCcHHHHcC------CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHH-HHHHHcC
Confidence 33334467778887642 12255 8999999886531 378999633334443 34544444 5888999
Q ss_pred CCCC
Q 044385 123 KSVP 126 (132)
Q Consensus 123 k~~P 126 (132)
-.+|
T Consensus 75 v~~p 78 (91)
T 1t12_A 75 VNIP 78 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9866
Done!