Query 044387
Match_columns 446
No_of_seqs 167 out of 1741
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 3.8E-17 8.3E-22 143.2 -3.2 187 12-223 98-296 (419)
2 KOG4341 F-box protein containi 99.5 9E-17 1.9E-21 147.1 -6.0 351 14-421 74-441 (483)
3 smart00579 FBD domain in FBox 99.5 3.1E-13 6.8E-18 97.3 8.5 72 374-446 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.3 3.9E-12 8.5E-17 84.0 5.0 50 366-415 2-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 4.9E-09 1.1E-13 68.3 1.0 35 12-46 1-35 (47)
6 PLN00113 leucine-rich repeat r 98.7 1.8E-08 3.8E-13 110.2 5.2 173 115-302 93-270 (968)
7 cd00116 LRR_RI Leucine-rich re 98.6 6.9E-09 1.5E-13 98.4 -1.3 37 162-199 80-119 (319)
8 PLN00113 leucine-rich repeat r 98.5 6.7E-08 1.5E-12 105.7 3.8 104 115-223 164-270 (968)
9 cd00116 LRR_RI Leucine-rich re 98.4 1.6E-07 3.4E-12 89.1 3.3 250 139-419 22-291 (319)
10 KOG1909 Ran GTPase-activating 98.4 7.8E-08 1.7E-12 87.2 0.5 180 159-356 88-282 (382)
11 PF00646 F-box: F-box domain; 98.3 1.1E-07 2.3E-12 62.3 -0.6 37 12-48 3-39 (48)
12 PLN03210 Resistant to P. syrin 98.2 1.3E-06 2.7E-11 96.6 5.2 111 130-252 602-715 (1153)
13 KOG4194 Membrane glycoprotein 98.1 3.1E-07 6.6E-12 88.8 -1.4 276 115-407 173-470 (873)
14 KOG4194 Membrane glycoprotein 98.1 1.1E-06 2.3E-11 85.1 2.0 268 117-416 151-426 (873)
15 smart00256 FBOX A Receptor for 98.1 9.1E-07 2E-11 55.7 0.5 33 15-47 1-33 (41)
16 KOG3207 Beta-tubulin folding c 98.1 1.9E-07 4.2E-12 87.1 -3.8 207 138-355 119-337 (505)
17 PLN03210 Resistant to P. syrin 97.8 9.5E-06 2.1E-10 89.8 3.5 79 115-199 634-715 (1153)
18 KOG2982 Uncharacterized conser 97.7 2.1E-05 4.5E-10 70.3 3.0 240 142-403 47-307 (418)
19 KOG2120 SCF ubiquitin ligase, 97.6 5.7E-06 1.2E-10 73.8 -2.2 59 163-223 185-244 (419)
20 KOG0444 Cytoskeletal regulator 97.5 1.5E-06 3.3E-11 84.8 -8.3 207 131-356 23-234 (1255)
21 PRK15370 E3 ubiquitin-protein 97.5 0.00011 2.4E-09 76.7 4.6 199 116-355 179-378 (754)
22 KOG0444 Cytoskeletal regulator 97.4 5.9E-07 1.3E-11 87.5 -11.7 207 128-356 91-303 (1255)
23 PF07723 LRR_2: Leucine Rich R 97.4 0.00015 3.2E-09 40.0 2.1 25 164-188 1-26 (26)
24 KOG1909 Ran GTPase-activating 97.3 8.2E-05 1.8E-09 68.0 0.6 121 75-201 20-170 (382)
25 KOG0618 Serine/threonine phosp 97.2 1.5E-05 3.2E-10 81.4 -4.9 68 104-177 255-324 (1081)
26 PRK15370 E3 ubiquitin-protein 97.2 0.00016 3.6E-09 75.4 2.5 59 292-356 367-427 (754)
27 PF14580 LRR_9: Leucine-rich r 97.2 5.6E-05 1.2E-09 64.0 -0.9 103 116-224 20-124 (175)
28 KOG4341 F-box protein containi 97.2 2.3E-05 4.9E-10 73.2 -3.5 97 101-200 125-228 (483)
29 KOG3207 Beta-tubulin folding c 97.2 8.4E-05 1.8E-09 69.9 0.0 127 139-271 171-310 (505)
30 PF14580 LRR_9: Leucine-rich r 97.2 0.00022 4.8E-09 60.4 2.5 64 290-355 86-151 (175)
31 PRK15387 E3 ubiquitin-protein 97.1 0.00055 1.2E-08 71.3 5.0 112 116-253 202-314 (788)
32 KOG3665 ZYG-1-like serine/thre 96.9 0.00031 6.8E-09 72.6 1.4 157 139-353 121-284 (699)
33 PRK15387 E3 ubiquitin-protein 96.8 0.0016 3.4E-08 68.1 4.8 52 116-176 223-275 (788)
34 KOG1259 Nischarin, modulator o 96.7 0.00047 1E-08 61.9 0.5 241 131-401 173-450 (490)
35 PF13855 LRR_8: Leucine rich r 96.6 0.002 4.4E-08 44.2 3.2 59 140-199 1-60 (61)
36 COG5238 RNA1 Ran GTPase-activa 96.6 0.0024 5.2E-08 56.7 3.9 178 159-355 88-283 (388)
37 KOG1947 Leucine rich repeat pr 96.2 0.00025 5.5E-09 71.2 -5.0 40 9-48 42-81 (482)
38 KOG0617 Ras suppressor protein 95.9 0.00016 3.5E-09 59.5 -6.3 66 130-199 46-113 (264)
39 KOG2739 Leucine-rich acidic nu 95.5 0.0014 3.1E-08 57.8 -2.4 110 139-251 42-153 (260)
40 PF12799 LRR_4: Leucine Rich r 95.5 0.0096 2.1E-07 37.7 1.9 36 163-200 1-36 (44)
41 PF13855 LRR_8: Leucine rich r 95.4 0.037 8E-07 37.8 4.8 57 116-174 2-60 (61)
42 KOG1947 Leucine rich repeat pr 95.3 0.0029 6.3E-08 63.5 -1.4 38 318-355 294-332 (482)
43 KOG1259 Nischarin, modulator o 94.7 0.026 5.6E-07 51.1 3.1 132 292-440 284-432 (490)
44 KOG3665 ZYG-1-like serine/thre 94.5 0.016 3.4E-07 60.3 1.4 156 241-414 122-283 (699)
45 KOG1859 Leucine-rich repeat pr 94.5 0.0016 3.4E-08 65.5 -5.5 66 86-156 54-123 (1096)
46 KOG0472 Leucine-rich repeat pr 94.2 0.0019 4.1E-08 60.5 -5.4 29 393-421 515-543 (565)
47 KOG2982 Uncharacterized conser 94.0 0.017 3.7E-07 52.2 0.4 158 163-355 45-210 (418)
48 KOG0281 Beta-TrCP (transducin 93.8 0.016 3.4E-07 53.0 -0.3 37 8-44 71-111 (499)
49 PF12799 LRR_4: Leucine Rich r 93.7 0.046 1E-06 34.6 1.8 36 140-177 1-38 (44)
50 KOG2997 F-box protein FBX9 [Ge 93.0 0.032 7E-07 50.6 0.3 35 10-44 105-144 (366)
51 PLN03215 ascorbic acid mannose 92.9 0.037 8E-07 52.5 0.7 37 12-48 4-41 (373)
52 KOG0617 Ras suppressor protein 92.9 0.012 2.5E-07 48.8 -2.4 83 116-200 57-139 (264)
53 KOG1644 U2-associated snRNP A' 92.9 0.2 4.3E-06 42.9 4.8 61 139-200 63-125 (233)
54 KOG0618 Serine/threonine phosp 92.1 0.049 1.1E-06 56.7 0.3 38 316-355 238-275 (1081)
55 COG4886 Leucine-rich repeat (L 91.6 0.043 9.3E-07 53.6 -0.6 164 139-328 115-286 (394)
56 KOG1644 U2-associated snRNP A' 91.6 0.35 7.6E-06 41.5 4.9 79 140-223 42-123 (233)
57 PLN03150 hypothetical protein; 91.0 0.19 4E-06 52.3 3.3 81 142-226 420-503 (623)
58 KOG2123 Uncharacterized conser 90.8 0.015 3.3E-07 52.0 -4.2 102 242-353 20-126 (388)
59 KOG2123 Uncharacterized conser 90.0 0.0028 6.1E-08 56.5 -9.3 78 116-198 20-98 (388)
60 COG5238 RNA1 Ran GTPase-activa 89.7 0.23 4.9E-06 44.6 2.2 201 139-356 29-254 (388)
61 KOG4658 Apoptotic ATPase [Sign 87.7 0.15 3.2E-06 54.8 -0.4 66 130-198 585-652 (889)
62 PRK15386 type III secretion pr 86.7 0.76 1.6E-05 44.5 3.9 112 138-272 50-166 (426)
63 KOG3864 Uncharacterized conser 85.6 0.087 1.9E-06 45.1 -2.7 92 130-223 91-186 (221)
64 PRK15386 type III secretion pr 85.0 2.1 4.6E-05 41.5 5.9 132 115-270 52-185 (426)
65 PLN03150 hypothetical protein; 82.9 0.74 1.6E-05 47.9 2.1 84 164-253 419-502 (623)
66 KOG0274 Cdc4 and related F-box 81.7 0.42 9E-06 48.4 -0.2 39 7-45 103-141 (537)
67 COG4886 Leucine-rich repeat (L 80.0 0.52 1.1E-05 46.0 -0.2 165 116-302 117-287 (394)
68 KOG3864 Uncharacterized conser 79.0 2.2 4.8E-05 36.8 3.3 16 406-421 176-191 (221)
69 smart00367 LRR_CC Leucine-rich 79.0 1.3 2.8E-05 24.1 1.3 21 162-182 1-22 (26)
70 KOG2739 Leucine-rich acidic nu 77.1 0.72 1.6E-05 41.2 -0.2 19 235-253 85-103 (260)
71 PF13013 F-box-like_2: F-box-l 76.7 1 2.3E-05 34.7 0.6 30 11-40 21-50 (109)
72 KOG0472 Leucine-rich repeat pr 74.3 0.64 1.4E-05 44.2 -1.3 38 317-356 503-540 (565)
73 PF13516 LRR_6: Leucine Rich r 73.7 1.3 2.9E-05 23.5 0.4 18 163-180 2-19 (24)
74 PF13504 LRR_7: Leucine rich r 72.0 2.4 5.3E-05 20.5 1.1 11 164-174 2-12 (17)
75 KOG4658 Apoptotic ATPase [Sign 68.0 2.1 4.6E-05 46.2 0.7 39 317-355 640-679 (889)
76 PF01827 FTH: FTH domain; Int 63.9 36 0.00077 27.3 7.2 117 73-195 3-124 (142)
77 PF13306 LRR_5: Leucine rich r 57.3 16 0.00036 28.6 4.0 64 132-197 3-67 (129)
78 PF08387 FBD: FBD; InterPro: 57.0 16 0.00035 23.7 3.2 34 319-352 14-50 (51)
79 KOG0531 Protein phosphatase 1, 54.1 2.2 4.8E-05 42.0 -2.0 79 137-223 92-172 (414)
80 KOG1859 Leucine-rich repeat pr 50.6 4.8 0.0001 41.7 -0.3 60 159-223 183-242 (1096)
81 smart00368 LRR_RI Leucine rich 50.3 12 0.00027 20.7 1.5 18 163-180 2-19 (28)
82 KOG0531 Protein phosphatase 1, 45.9 8.6 0.00019 37.8 0.7 60 159-223 91-150 (414)
83 KOG4237 Extracellular matrix p 45.3 7.7 0.00017 37.1 0.3 60 139-199 273-333 (498)
84 PF09372 PRANC: PRANC domain; 44.5 11 0.00024 28.4 1.0 24 10-33 70-93 (97)
85 smart00579 FBD domain in FBox 44.3 39 0.00086 23.5 3.8 38 319-356 5-45 (72)
86 KOG4237 Extracellular matrix p 43.1 6.5 0.00014 37.6 -0.6 59 116-176 68-129 (498)
87 PF00560 LRR_1: Leucine Rich R 37.4 14 0.00031 19.0 0.5 8 142-149 2-9 (22)
88 KOG3926 F-box proteins [Amino 33.7 6.4 0.00014 35.3 -2.0 51 9-59 199-256 (332)
89 PF13306 LRR_5: Leucine rich r 33.1 55 0.0012 25.5 3.5 76 116-196 13-89 (129)
90 smart00370 LRR Leucine-rich re 32.2 30 0.00065 18.4 1.2 13 163-175 2-14 (26)
91 smart00369 LRR_TYP Leucine-ric 32.2 30 0.00065 18.4 1.2 13 163-175 2-14 (26)
92 KOG4408 Putative Mg2+ and Co2+ 28.3 15 0.00032 34.2 -0.7 35 12-46 8-42 (386)
93 KOG0532 Leucine-rich repeat (L 24.3 4 8.6E-05 40.9 -5.4 32 294-329 213-244 (722)
94 KOG4579 Leucine-rich repeat (L 21.8 16 0.00035 29.7 -1.5 58 139-200 52-112 (177)
95 PF01827 FTH: FTH domain; Int 20.8 4.3E+02 0.0092 20.8 7.7 37 378-414 89-125 (142)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.8e-17 Score=143.22 Aligned_cols=187 Identities=20% Similarity=0.209 Sum_probs=124.4
Q ss_pred cCCCChHHHHHHhccCCccceeeecccccchHH------HhccCceeEeeccccccCCCCCCCCCCcHHHHHHHhhccCC
Q 044387 12 ISALPDSVLCHILSYLPTKNAVATSLLARRWKL------VWTSLQKLYFDDRQSRRLPGMMGDPMPGFEEFVETVLTGTY 85 (446)
Q Consensus 12 is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~------lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~ 85 (446)
+..|||||+..||+.|+-||+.+.+.|||||.+ +|.. +++....+ +| ....+.+. +
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i--~p-----------~~l~~l~~-r- 159 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNI--HP-----------DVLGRLLS-R- 159 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCcc--Ch-----------hHHHHHHh-C-
Confidence 678999999999999999999999999999986 4543 33333333 12 22223222 2
Q ss_pred CCcceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCC---CccC
Q 044387 86 PTNITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAG---GTSF 162 (446)
Q Consensus 86 ~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~---~~~~ 162 (446)
.|..|++.-. ..+...++.. ...++.+++++++....-....+.-.+..|..|+.|.|.| ..+.+|- ...-
T Consensus 160 --gV~v~Rlar~-~~~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg--~~LdD~I~~~iAkN 233 (419)
T KOG2120|consen 160 --GVIVFRLARS-FMDQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG--LRLDDPIVNTIAKN 233 (419)
T ss_pred --CeEEEEcchh-hhcCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc--cccCcHHHHHHhcc
Confidence 3666665422 1122222221 1234557899998775444455555566799999999999 8888863 4567
Q ss_pred CcccEEEeeeec-CCchhhhhhhhcCCccceeEEEeecCCCCCCeEEE--eecCCcceEEEeee
Q 044387 163 PNVKILSVQLES-PENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFV--ISSSTLKRCTLWVA 223 (446)
Q Consensus 163 ~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~--i~~~~L~~L~l~~~ 223 (446)
.+|+.|+|+.+. ++..++.-++++|..|.+|.|+-|...... +... ..+++|+.|.+.+|
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhh
Confidence 889999999996 455559999999999999999999754211 1100 23455666666555
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.54 E-value=9e-17 Score=147.11 Aligned_cols=351 Identities=17% Similarity=0.144 Sum_probs=208.2
Q ss_pred CCChHHHHHHhccCCccceeeecccccchHHH------hccCceeEeeccccccCCCCCCCCCCcHHHHHHHhhccCCCC
Q 044387 14 ALPDSVLCHILSYLPTKNAVATSLLARRWKLV------WTSLQKLYFDDRQSRRLPGMMGDPMPGFEEFVETVLTGTYPT 87 (446)
Q Consensus 14 ~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~ 87 (446)
.||+|++..|||+|+++...+++.+|+-|..+ |..+.-..|.... + -..|..+.. +.|.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv----~----------g~VV~~~~~-Rcgg 138 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV----D----------GGVVENMIS-RCGG 138 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC----C----------CcceehHhh-hhcc
Confidence 69999999999999999999999999999965 4333322221111 1 022333333 3445
Q ss_pred cceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCC-CccccCCcccccCcccEEEEeceeEe-ecCC----CCcc
Q 044387 88 NITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQN-HRVELPEELYTSVSVEVLKLMSDFVI-KVPA----GGTS 161 (446)
Q Consensus 88 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~~~-l~~~----~~~~ 161 (446)
.++.+.++.........+...- ...+++++|.+..+.. ....+-...-.|.+|++|.|.+ |. +... ...+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~--c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS--CSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc--cchhHHHHHHHHHHh
Confidence 7888888887544333333221 1356788887655431 1111111111388888888888 52 2221 2457
Q ss_pred CCcccEEEeeeec-CCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEe--ecCCcceEEEeeecccccccccceeEEE
Q 044387 162 FPNVKILSVQLES-PENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVI--SSSTLKRCTLWVATEGEMFTQAEYKVRI 238 (446)
Q Consensus 162 ~~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i--~~~~L~~L~l~~~~~~~~~~~~~~~~~i 238 (446)
|++|++|+++++. +.+..++.+..+|..|+++.+++|...+++.+.. + ..+-+.++.+..|..... .....+.-
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~-~~~~~~~i~~lnl~~c~~lTD--~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK-AAAYCLEILKLNLQHCNQLTD--EDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH-HhccChHhhccchhhhccccc--hHHHHHhh
Confidence 8888888888885 4444588888888888888888886544333220 1 122233333334411100 01111222
Q ss_pred ecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccC-c
Q 044387 239 TAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFP-A 317 (446)
Q Consensus 239 ~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p-~ 317 (446)
.+-.|+.+.++++. . .+...+..+-++.++|+.|.+..... +.+.....+. .
T Consensus 292 ~c~~lq~l~~s~~t---------------------~----~~d~~l~aLg~~~~~L~~l~l~~c~~--fsd~~ft~l~rn 344 (483)
T KOG4341|consen 292 GCHALQVLCYSSCT---------------------D----ITDEVLWALGQHCHNLQVLELSGCQQ--FSDRGFTMLGRN 344 (483)
T ss_pred hhhHhhhhcccCCC---------------------C----CchHHHHHHhcCCCceEEEeccccch--hhhhhhhhhhcC
Confidence 23334444333321 1 01111677778888999998887532 2222333332 4
Q ss_pred cccceeEEEEecccc-hhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEeecCChhHHH
Q 044387 318 LSHLQHLEVAVGAIG-WAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKGVEGDDDELI 396 (446)
Q Consensus 318 ~~~L~~L~l~~~~~~-~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~~~g~~~~~~ 396 (446)
.+.|+.|++..+... +..+.++-.+||.||+|.++.+.....+ ..... ....|...+|..+++.+..+... +
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l----~~~~c~~~~l~~lEL~n~p~i~d--~ 417 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHL----SSSSCSLEGLEVLELDNCPLITD--A 417 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hhhhh----hhccccccccceeeecCCCCchH--H
Confidence 578999999877763 3459999999999999999976642111 01111 12346778899999988777633 4
Q ss_pred HHHHHHhcCccccceEEEeecCCCh
Q 044387 397 LVDYLLKYSSVLEVMVICFKGSVSK 421 (446)
Q Consensus 397 l~~~ll~~a~~Le~m~i~~~~~~~~ 421 (446)
..+++ .+.++||++.+...+.+.+
T Consensus 418 ~Le~l-~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 418 TLEHL-SICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHHHH-hhCcccceeeeechhhhhh
Confidence 55554 7778999998887776665
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.46 E-value=3.1e-13 Score=97.33 Aligned_cols=72 Identities=32% Similarity=0.621 Sum_probs=64.6
Q ss_pred cccccceEEEEEEeecCChhHHHHHHHHHhcCccccceEEEeecCCChhHHHHHHHHHhhccccCCccEEEEC
Q 044387 374 NCLLQHVKKIEIKGVEGDDDELILVDYLLKYSSVLEVMVICFKGSVSKQERRDIGRSILQVQRASNRCKLELV 446 (446)
Q Consensus 374 ~c~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~~~~~~~~~~~~~~L~~~~r~S~~~~~~~~ 446 (446)
+|+.++|++|+|.+|.|...|+++++||++||+.||+|+|..+..... +..++.++|..++|||+.|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~-~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDD-EKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCcc-HHHHHHHHHHhCcCCCCceEEEeC
Confidence 378889999999999999999999999999999999999999876554 345678999999999999999874
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.30 E-value=3.9e-12 Score=83.97 Aligned_cols=50 Identities=48% Similarity=0.927 Sum_probs=47.1
Q ss_pred cccccccCcccccceEEEEEEeecCChhHHHHHHHHHhcCccccceEEEe
Q 044387 366 WIEGDIVPNCLLQHVKKIEIKGVEGDDDELILVDYLLKYSSVLEVMVICF 415 (446)
Q Consensus 366 ~~~~~~~~~c~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~ 415 (446)
|.++..+|+|+.+||+.|++.||.|...|++|++|+++||++||+|+|..
T Consensus 2 W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 2 WIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 76777889999999999999999999999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.69 E-value=4.9e-09 Score=68.34 Aligned_cols=35 Identities=43% Similarity=0.808 Sum_probs=30.9
Q ss_pred cCCCChHHHHHHhccCCccceeeecccccchHHHh
Q 044387 12 ISALPDSVLCHILSYLPTKNAVATSLLARRWKLVW 46 (446)
Q Consensus 12 is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw 46 (446)
|+.||+||+.+||++|+.+|.++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999764
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.67 E-value=1.8e-08 Score=110.20 Aligned_cols=173 Identities=17% Similarity=0.082 Sum_probs=89.7
Q ss_pred CCceEEEEEecCCCccccCCccc-ccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVELPEELY-TSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
..++.|++..+.- ...+|..++ .+++|++|+|++ +.+.. .+...+++|++|+|+++.+.+. +...+.++++|+.
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~--n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSN--NNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcC--CccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCE
Confidence 3677776654321 135676666 578888888877 44432 2234577788888877766532 3334566778888
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC---cEEEecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l 269 (446)
|++.+|...+...-. +...++|+.|.+..|...+.. ....-..++|+.|.+.++... ...+.++++|+.+++
T Consensus 169 L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 169 LDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQI----PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred EECccCcccccCChh-hhhCcCCCeeeccCCCCcCcC----ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 888777542111111 023456777777766322110 011122355666666554322 122345566666655
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEch
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYG 302 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 302 (446)
....... . ....+..+++++.|.++.+
T Consensus 244 ~~n~l~~--~----~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 244 VYNNLTG--P----IPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCceecc--c----cChhHhCCCCCCEEECcCC
Confidence 4332110 0 1223445555555555543
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=6.9e-09 Score=98.39 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=16.9
Q ss_pred CCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEeec
Q 044387 162 FPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~ 199 (446)
+++|+.|+|+++.+.... +..+..+ |+|+.|++.+|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 445555555555544211 3333333 445555555543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.50 E-value=6.7e-08 Score=105.68 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
.+++.|++..+.- ...+|..+..+++|++|+|++ +.+. +.....+++|++|+|.++.+.+. +...++++++|+
T Consensus 164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 239 (968)
T PLN00113 164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLAS--NQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLN 239 (968)
T ss_pred CCCCEEECccCcc-cccCChhhhhCcCCCeeeccC--CCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCC
Confidence 4778887765322 135666667788888888887 4432 22355677888888877766543 233356677788
Q ss_pred eeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 192 ELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
.|++.+|...+...-. +-..++|+.|.+..+
T Consensus 240 ~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 270 (968)
T PLN00113 240 HLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN 270 (968)
T ss_pred EEECcCceeccccChh-HhCCCCCCEEECcCC
Confidence 8777776542111101 022355666666655
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=1.6e-07 Score=89.06 Aligned_cols=250 Identities=15% Similarity=0.076 Sum_probs=110.1
Q ss_pred cCcccEEEEeceeEeecCC-------CCccCCcccEEEeeeecCC--chh---hhhhhhcCCccceeEEEeecCCCCCC-
Q 044387 139 SVSVEVLKLMSDFVIKVPA-------GGTSFPNVKILSVQLESPE--NSL---TEKLFCSCPALEELSIQAYLNDEGPT- 205 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~-------~~~~~~~L~~L~L~~~~~~--~~~---l~~lls~cp~Le~L~l~~~~~~~~~~- 205 (446)
...|+.|.+.+ +.+... .....+.|++|++++..+. ... +...+..++.|+.|++.+|...+...
T Consensus 22 l~~L~~l~l~~--~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEG--NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HhhccEEeecC--CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 45577777777 554321 1234556777777776665 222 33445556677777777765431100
Q ss_pred -eEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecC-CCceEEEEEEEeCccccCChhh
Q 044387 206 -TKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDL-NSLTDVILDIVYGEWSRVDPNR 283 (446)
Q Consensus 206 -~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~-p~L~~~~l~~~~~~~~~~~~~~ 283 (446)
+......++|+.|.+.+|..... +...+ ...+... ++|+++++..+.........
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~---~~~~l------------------~~~l~~~~~~L~~L~L~~n~l~~~~~~~-- 156 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDR---GLRLL------------------AKGLKDLPPALEKLVLGRNRLEGASCEA-- 156 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchH---HHHHH------------------HHHHHhCCCCceEEEcCCCcCCchHHHH--
Confidence 00000013355555555522110 00000 0011122 44555544433221100001
Q ss_pred HHHHHHhccCceEEEEEchhHHhhh-cccccccCccccceeEEEEecccc---hhHHHHHHhcCCCCcEEEEEecccccc
Q 044387 284 AIQLLQRLNNTKNLTVSYGVLCALD-HAYHIWFPALSHLQHLEVAVGAIG---WAVLPVILSSSQNLQSLILRKQSRFEV 359 (446)
Q Consensus 284 ~~~~l~~l~~l~~L~l~~~~~~~~~-~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~lL~~~p~L~~L~i~~~~~~~~ 359 (446)
+...+..+++++.|.++.+.+..-. ......++.+++|++|+++.+... ...+...+..+|+|+.|++..+.-.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~-- 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT-- 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc--
Confidence 3344555566777777665433100 000222334457777777655432 2334445566677777777665421
Q ss_pred cccccCcccccccCcccccceEEEEEEeec-CChhHHHHHHHHHhcCccccceEEEeecCC
Q 044387 360 TEEQFGWIEGDIVPNCLLQHVKKIEIKGVE-GDDDELILVDYLLKYSSVLEVMVICFKGSV 419 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~c~~~~L~~v~i~~~~-g~~~~~~l~~~ll~~a~~Le~m~i~~~~~~ 419 (446)
......... ..+. ....|+.+.+.+.. +......+++.+ .+.+.|+.+.+..+.-.
T Consensus 235 ~~~~~~l~~--~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 235 DAGAAALAS--ALLS-PNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNKFG 291 (319)
T ss_pred hHHHHHHHH--HHhc-cCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCCCc
Confidence 000000000 0000 12456666665421 122333444544 33367777766655433
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=7.8e-08 Score=87.22 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=114.3
Q ss_pred CccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeeccccccccccee
Q 044387 159 GTSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYK 235 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~ 235 (446)
..++|+|++|+|++..+.... +..++++|..|++|.|.+|... ...-. .-...|..|. ...
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~--~l~~al~~l~-------------~~k 151 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGG--RLGRALFELA-------------VNK 151 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHH--HHHHHHHHHH-------------HHh
Confidence 456778999999999887764 9999999999999999999643 11000 0000111111 012
Q ss_pred EEEecCCceEEEeeecccCc-------EEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhh
Q 044387 236 VRITAPSLERLHIMSDIFGK-------FVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALD 308 (446)
Q Consensus 236 ~~i~ap~L~~L~l~~~~~~~-------~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~ 308 (446)
..-++|.|+.+....+.... -.+...|.|+++.+........+... +..-+..+++++.|.+..+++..-.
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a--l~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA--LAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH--HHHHHHhCCcceeeecccchhhhHH
Confidence 22334666666655433221 12344577777776544332222211 4555778999999999998876543
Q ss_pred c-ccccccCccccceeEEEEeccc---chhHHHH-HHhcCCCCcEEEEEeccc
Q 044387 309 H-AYHIWFPALSHLQHLEVAVGAI---GWAVLPV-ILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 309 ~-~~~~~~p~~~~L~~L~l~~~~~---~~~~l~~-lL~~~p~L~~L~i~~~~~ 356 (446)
. +....+|.|++|+.|.++.|-. ....+.. +-+..|+|+.|.+.++.-
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 3 2267889999999999998865 3333333 455689999999988774
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=1.1e-07 Score=62.34 Aligned_cols=37 Identities=43% Similarity=0.761 Sum_probs=31.2
Q ss_pred cCCCChHHHHHHhccCCccceeeecccccchHHHhcc
Q 044387 12 ISALPDSVLCHILSYLPTKNAVATSLLARRWKLVWTS 48 (446)
Q Consensus 12 is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw~~ 48 (446)
|++||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999987654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=1.3e-06 Score=96.62 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=60.3
Q ss_pred cccCCcccccCcccEEEEeceeEeecC--CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeE
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVP--AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTK 207 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~ 207 (446)
..+|..+ ...+|+.|+|.+ +.+.. .+...+++|+.|+|+++..... +.. ++.+|+|+.|.+.+|... ..+.
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~--s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L--~~lp 674 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQG--SKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSL--VELP 674 (1153)
T ss_pred CCCCCcC-CccCCcEEECcC--ccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCc--cccc
Confidence 3455433 467788888887 44432 2345677888888876542211 111 556788888888777532 1110
Q ss_pred -EEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecc
Q 044387 208 -FVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDI 252 (446)
Q Consensus 208 -~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 252 (446)
.+-..++|+.|.+.+|...... ...+..++|++|.++++.
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~L-----p~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEIL-----PTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCcc-----CCcCCCCCCCEEeCCCCC
Confidence 0023456777777766322111 111245566666666653
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.13 E-value=3.1e-07 Score=88.76 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=148.0
Q ss_pred CCceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
.++++|.+....-. .+-..-|. ..+|..|+|+.+.. .++...+..+|+|+.|+|....+.--. .--+.+.|+|+.
T Consensus 173 ~ni~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQN 249 (873)
T ss_pred CCceEEeecccccc--ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhh
Confidence 37777777664322 23222343 56888899988433 233334556888999988888765422 111456788888
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEE---ecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVV---HDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~---~~~p~L~~~~l 269 (446)
|.+..+....+..=. +.....+++|.+..+..... -......-..|+.|+++......+.. .-+++|.++++
T Consensus 250 lklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGA-FYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhcCcccccCcc-eeeecccceeecccchhhhh----hcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 888877543222211 15566777887776632110 01233444567777777655444332 35778888877
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc--hhHHHHHHhcCCCCc
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG--WAVLPVILSSSQNLQ 347 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~lL~~~p~L~ 347 (446)
+..... .++++ -+..++.++.|.++.+.+..+.+.. +..+++|+.|+|+.+... .+.-.......|.|+
T Consensus 325 s~N~i~--~l~~~----sf~~L~~Le~LnLs~Nsi~~l~e~a---f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 325 SSNRIT--RLDEG----SFRVLSQLEELNLSHNSIDHLAEGA---FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccccc--cCChh----HHHHHHHhhhhcccccchHHHHhhH---HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 654322 24432 3556667777777777666654332 233456666666533320 011223345577777
Q ss_pred EEEEEecccccc-cccccC---ccc------c--cccCc-ccccceEEEEEEe--ecCChhHHHHHHHHHhcCcc
Q 044387 348 SLILRKQSRFEV-TEEQFG---WIE------G--DIVPN-CLLQHVKKIEIKG--VEGDDDELILVDYLLKYSSV 407 (446)
Q Consensus 348 ~L~i~~~~~~~~-~~~~~~---~~~------~--~~~~~-c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~~a~~ 407 (446)
+|.+.++.-... +....+ .|+ + +..++ ...-+|+++.|.. |-+++.-..+...+..+...
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 777777653200 000000 000 0 00011 1122788887764 66776666777777665433
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.12 E-value=1.1e-06 Score=85.13 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=162.6
Q ss_pred ceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 117 AREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 117 v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
++.+++.... ..++|..-|. ..++++|.|.++.. .+....+.+|.+|.+|.|+..+++.-. .+.+.+.|.||.|+
T Consensus 151 lrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 151 LRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhhhh
Confidence 4555554422 2344544454 57899999998433 444456778889999999999887643 45577889999999
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEEEEEE
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDI 271 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~ 271 (446)
|..+...-.+.+.| -..++|+.|.+..++... -.....-.+.+++.|++.......+ -+-++.+|+.+++.+
T Consensus 228 LnrN~irive~ltF-qgL~Sl~nlklqrN~I~k----L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTF-QGLPSLQNLKLQRNDISK----LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ccccceeeehhhhh-cCchhhhhhhhhhcCccc----ccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 99987543334331 346889999998874331 1123455567888898887655433 234567777777765
Q ss_pred EeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHH-HHhcCCCCcEEE
Q 044387 272 VYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPV-ILSSSQNLQSLI 350 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~-lL~~~p~L~~L~ 350 (446)
..... +.+. --.-++.++.|.++.+.+..+ ..+.+..++.|+.|.|+-+. ...+.. -+.+..+|++|+
T Consensus 303 NaI~r--ih~d----~WsftqkL~~LdLs~N~i~~l---~~~sf~~L~~Le~LnLs~Ns--i~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 303 NAIQR--IHID----SWSFTQKLKELDLSSNRITRL---DEGSFRVLSQLEELNLSHNS--IDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred hhhhe--eecc----hhhhcccceeEeccccccccC---ChhHHHHHHHhhhhcccccc--hHHHHhhHHHHhhhhhhhc
Confidence 33221 1111 123356899999998766543 24455667788888886543 223333 367778999999
Q ss_pred EEecccccccccccCcc--cccccCcccccceEEEEEEeecCChhHHHHHHHHHhcCccccceEEEee
Q 044387 351 LRKQSRFEVTEEQFGWI--EGDIVPNCLLQHVKKIEIKGVEGDDDELILVDYLLKYSSVLEVMVICFK 416 (446)
Q Consensus 351 i~~~~~~~~~~~~~~~~--~~~~~~~c~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~ 416 (446)
+..+.-. |- +....++. +.+|+.+.+. |++ -..+.+.-++-.++||.+.+..+
T Consensus 372 Lr~N~ls--------~~IEDaa~~f~g-l~~LrkL~l~---gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 372 LRSNELS--------WCIEDAAVAFNG-LPSLRKLRLT---GNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CcCCeEE--------EEEecchhhhcc-chhhhheeec---Cce-eeecchhhhccCcccceecCCCC
Confidence 9887732 21 11111222 4556666555 321 12344444555566666665544
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.08 E-value=9.1e-07 Score=55.68 Aligned_cols=33 Identities=39% Similarity=0.704 Sum_probs=31.1
Q ss_pred CChHHHHHHhccCCccceeeecccccchHHHhc
Q 044387 15 LPDSVLCHILSYLPTKNAVATSLLARRWKLVWT 47 (446)
Q Consensus 15 LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw~ 47 (446)
||+|++.+||++|+.+|..+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998754
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-07 Score=87.08 Aligned_cols=207 Identities=19% Similarity=0.120 Sum_probs=138.3
Q ss_pred ccCcccEEEEeceeEeecCCC----CccCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCCCCCCeEEEeec
Q 044387 138 TSVSVEVLKLMSDFVIKVPAG----GTSFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLNDEGPTTKFVISS 212 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~~~----~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~ 212 (446)
+.++|+...|.+ +.+..++ .-.||+++.|+|+..-+.... +.++....|+||.|.|+.+.......-......
T Consensus 119 n~kkL~~IsLdn--~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDN--YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecC--ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467888889998 7665543 457999999999999998877 889999999999999999865322111100456
Q ss_pred CCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC---cEEEecCCCceEEEEEEEeCccccCChhhHHHHHH
Q 044387 213 STLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQ 289 (446)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~ 289 (446)
+.||.|.+..|...+. ....+....|+|+.|.+.+.... ......+..|++++|....... ++ ......
T Consensus 197 ~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~---~~~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FD---QGYKVG 268 (505)
T ss_pred hhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cc---cccccc
Confidence 7899999999954331 33456777899999999887422 1122345667777776433221 22 123456
Q ss_pred hccCceEEEEEchhHHhhhcccc---cccCccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecc
Q 044387 290 RLNNTKNLTVSYGVLCALDHAYH---IWFPALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 290 ~l~~l~~L~l~~~~~~~~~~~~~---~~~p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+++++.|.++.+.+..+..... .....|++|++|.+..+.. ++..+-+ ++..++|+.|.+....
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLNY 337 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccccc
Confidence 77888888888877766544432 2345788899999876554 3444333 4566777777655543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=9.5e-06 Score=89.77 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEe-e-cCC-CCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVI-K-VPA-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-l-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
.+++.+.+..+.. ...+| .+..+++|+.|+|.+ |. + ..| ....+++|+.|+|++|..... +..-+ ++++|+
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~--c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-Lp~~i-~l~sL~ 707 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSD--CSSLVELPSSIQYLNKLEDLDMSRCENLEI-LPTGI-NLKSLY 707 (1153)
T ss_pred CCCCEEECCCCCC-cCcCC-ccccCCcccEEEecC--CCCccccchhhhccCCCCEEeCCCCCCcCc-cCCcC-CCCCCC
Confidence 3566666643221 12344 244567777777777 42 2 122 345667777777776642211 11101 456666
Q ss_pred eeEEEeec
Q 044387 192 ELSIQAYL 199 (446)
Q Consensus 192 ~L~l~~~~ 199 (446)
.|.+.+|.
T Consensus 708 ~L~Lsgc~ 715 (1153)
T PLN03210 708 RLNLSGCS 715 (1153)
T ss_pred EEeCCCCC
Confidence 66666653
No 18
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=2.1e-05 Score=70.32 Aligned_cols=240 Identities=18% Similarity=0.150 Sum_probs=141.6
Q ss_pred ccEEEEeceeEeecCCC-----CccCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCCC-CCCeEEEeecCC
Q 044387 142 VEVLKLMSDFVIKVPAG-----GTSFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLNDE-GPTTKFVISSST 214 (446)
Q Consensus 142 L~~L~L~~~~~~l~~~~-----~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~~-~~~~~~~i~~~~ 214 (446)
+..|.+.+ +.++..+ ...++.++.|+|.+..+++.. +..++.+.|.|+.|.|+.+.... ...+- .+..+
T Consensus 47 ~ellvln~--~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNG--SIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKN 122 (418)
T ss_pred hhhheecC--CCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccc
Confidence 44555556 5554432 236788999999999999987 99999999999999999886531 22222 34567
Q ss_pred cceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEE------ecCCCceEEEEEEEeCccccCChhhHHHHH
Q 044387 215 LKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVV------HDLNSLTDVILDIVYGEWSRVDPNRAIQLL 288 (446)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~------~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l 288 (446)
|+.|.+.+.+-.+. ......-+-|.+.+|++++.....+.+ .--|.+.++....+ ....+.. ...+-
T Consensus 123 l~~lVLNgT~L~w~---~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c--~~~~w~~--~~~l~ 195 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT---QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC--LEQLWLN--KNKLS 195 (418)
T ss_pred eEEEEEcCCCCChh---hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc--HHHHHHH--HHhHH
Confidence 88888877632221 222445556778888777654332211 11122322222211 1101111 56677
Q ss_pred HhccCceEEEEEchhHHhhhccc-ccccCccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecccccccccccCc
Q 044387 289 QRLNNTKNLTVSYGVLCALDHAY-HIWFPALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGW 366 (446)
Q Consensus 289 ~~l~~l~~L~l~~~~~~~~~~~~-~~~~p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~ 366 (446)
+.|+++..+.+..+.++...... .+.+|.|+ -|.++-... ++++ ..-|..+|.|..|.+..++-. +. ..+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~---~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~--d~-l~~- 267 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS---CLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLS--DP-LRG- 267 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcch---hhhhcccccccHHH-HHHHcCCchhheeeccCCccc--cc-ccC-
Confidence 88999999999998777654332 55566544 566655444 3444 445789999999999887741 11 001
Q ss_pred ccccccCcccccceEEEEEEe---ecC---ChhHHHHHHHHHh
Q 044387 367 IEGDIVPNCLLQHVKKIEIKG---VEG---DDDELILVDYLLK 403 (446)
Q Consensus 367 ~~~~~~~~c~~~~L~~v~i~~---~~g---~~~~~~l~~~ll~ 403 (446)
.++.. -+--+|..|++.+ ++. ...|..|++|..+
T Consensus 268 ~err~---llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 268 GERRF---LLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred CcceE---EEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 00000 0123455565554 222 2467888888866
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.7e-06 Score=73.79 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=44.3
Q ss_pred CcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEe-ecCCcceEEEeee
Q 044387 163 PNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVI-SSSTLKRCTLWVA 223 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i-~~~~L~~L~l~~~ 223 (446)
++|+.|+|+...++...++.+++.|..|+.|.|.+...++..... + ....|+.|.+..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH--Hhccccceeeccccc
Confidence 469999999999998889999999999999999998765432222 2 1234666666665
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.48 E-value=1.5e-06 Score=84.79 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=108.2
Q ss_pred ccCCcccccCcccEEEEeceeEeec-CC-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEE
Q 044387 131 ELPEELYTSVSVEVLKLMSDFVIKV-PA-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKF 208 (446)
Q Consensus 131 ~lp~~l~~~~~L~~L~L~~~~~~l~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~ 208 (446)
.||..+.....++.|+|.. ..+. .| ....+.+|+.|++.+..+.. ++.=++..|.|+.+.+..+...+.....-
T Consensus 23 ~FP~~v~qMt~~~WLkLnr--t~L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNR--TKLEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred cCchhHHHhhheeEEEech--hhhhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCch
Confidence 4666666666666666665 3332 12 24566667777666665433 34445666777777776654321111000
Q ss_pred EeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEEEEEEEeCccccCChhhHH
Q 044387 209 VISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRAI 285 (446)
Q Consensus 209 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~ 285 (446)
+....-|..|+++.+.-... ..-...|.++..|+++......+ .+.++..|-.+++. .+.- +. +.
T Consensus 99 iF~l~dLt~lDLShNqL~Ev-----P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS--~NrL---e~--LP 166 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREV-----PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS--NNRL---EM--LP 166 (1255)
T ss_pred hcccccceeeecchhhhhhc-----chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc--cchh---hh--cC
Confidence 12334555566555421110 01122355666677766544322 23344444333333 2221 11 33
Q ss_pred HHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 286 QLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 286 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.-.+.+.++++|.++.+.+.. .-...+|.+..|..|+++....+...++.-+....||..++++.++.
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~h---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNH---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhH---HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 446777888888888876653 22456777777777777654444444444455556666666665553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.48 E-value=0.00011 Score=76.70 Aligned_cols=199 Identities=18% Similarity=0.161 Sum_probs=105.2
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSI 195 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l 195 (446)
+...+.+.. .....+|..+. ++|+.|+|++ +.+..-....+++|++|+|+++.+.. +..- -.+.|+.|.+
T Consensus 179 ~~~~L~L~~--~~LtsLP~~Ip--~~L~~L~Ls~--N~LtsLP~~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKI--LGLTTIPACIP--EQITTLILDN--NELKSLPENLQGNIKTLYANSNQLTS--IPAT--LPDTIQEMEL 248 (754)
T ss_pred CceEEEeCC--CCcCcCCcccc--cCCcEEEecC--CCCCcCChhhccCCCEEECCCCcccc--CChh--hhccccEEEC
Confidence 344444433 23345665442 5788999988 54433112234689999998887653 2111 1357899999
Q ss_pred EeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEE-ecCCceEEEeeecccCcEEEecCCCceEEEEEEEeC
Q 044387 196 QAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRI-TAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYG 274 (446)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~ 274 (446)
++|....+.. ....+|+.|.+.++... .+.- -.++|+.|.++++....+...-.++|+.+++.....
T Consensus 249 s~N~L~~LP~----~l~s~L~~L~Ls~N~L~--------~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 249 SINRITELPE----RLPSALQSLDLFHNKIS--------CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred cCCccCcCCh----hHhCCCCEEECcCCccC--------ccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence 8886532211 11246888888766322 1110 125788888887654322111123455544433211
Q ss_pred ccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEec
Q 044387 275 EWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQ 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~ 354 (446)
. .. | . ...++++.|.++.+.+..+ +..+| ++|+.|+++.+... .++.-+ .++|+.|+|..+
T Consensus 317 t--~L-P----~--~l~~sL~~L~Ls~N~Lt~L----P~~l~--~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 317 T--AL-P----E--TLPPGLKTLEAGENALTSL----PASLP--PELQVLDVSKNQIT--VLPETL--PPTITTLDVSRN 377 (754)
T ss_pred c--cC-C----c--cccccceeccccCCccccC----Chhhc--CcccEEECCCCCCC--cCChhh--cCCcCEEECCCC
Confidence 1 00 1 0 1124677777776654332 12222 57888888765432 111111 368888888876
Q ss_pred c
Q 044387 355 S 355 (446)
Q Consensus 355 ~ 355 (446)
.
T Consensus 378 ~ 378 (754)
T PRK15370 378 A 378 (754)
T ss_pred c
Confidence 5
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.42 E-value=5.9e-07 Score=87.52 Aligned_cols=207 Identities=18% Similarity=0.164 Sum_probs=120.1
Q ss_pred CccccCCcccccCcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCC
Q 044387 128 HRVELPEELYTSVSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPT 205 (446)
Q Consensus 128 ~~~~lp~~l~~~~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~ 205 (446)
....+|..+|..+.|+.|+|+. ..+. +.+...-.++-.|+|++..+..-. ..++-+..-|-.|+|+++..+.+..
T Consensus 91 KnsGiP~diF~l~dLt~lDLSh--NqL~EvP~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSH--NQLREVPTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred ccCCCCchhcccccceeeecch--hhhhhcchhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhhhcCH
Confidence 3467888999999999999988 5443 224445567788888888765422 2233344556677787776542221
Q ss_pred eEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC----cEEEecCCCceEEEEEEEeCccccCCh
Q 044387 206 TKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG----KFVVHDLNSLTDVILDIVYGEWSRVDP 281 (446)
Q Consensus 206 ~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~ 281 (446)
-- -+...|+.|.+.++.-.+- ...++ =.+.+|+.|++++.... +..+.++.+|.++++....-..
T Consensus 168 Q~--RRL~~LqtL~Ls~NPL~hf---QLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~----- 236 (1255)
T KOG0444|consen 168 QI--RRLSMLQTLKLSNNPLNHF---QLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI----- 236 (1255)
T ss_pred HH--HHHhhhhhhhcCCChhhHH---HHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-----
Confidence 11 2334577777776632110 00010 11234555666654322 3345667777777665433222
Q ss_pred hhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 282 NRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 282 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+...+-.+++++.|.++++.+.-+.. ..-.+.+|+.|.++.+.. ..++.-+-..|.|++|.+..+..
T Consensus 237 --vPecly~l~~LrrLNLS~N~iteL~~----~~~~W~~lEtLNlSrNQL--t~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 237 --VPECLYKLRNLRRLNLSGNKITELNM----TEGEWENLETLNLSRNQL--TVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred --chHHHhhhhhhheeccCcCceeeeec----cHHHHhhhhhhccccchh--ccchHHHhhhHHHHHHHhccCcc
Confidence 56667777888888888776543311 122446777777765432 34455556677888887766553
No 23
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.36 E-value=0.00015 Score=40.03 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.0
Q ss_pred cccEEEeeeecCCchh-hhhhhhcCC
Q 044387 164 NVKILSVQLESPENSL-TEKLFCSCP 188 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~-l~~lls~cp 188 (446)
+||+|+|..+.+.+++ +++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 5899999999998886 999999998
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.26 E-value=8.2e-05 Score=68.01 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=68.9
Q ss_pred HHHHHhhccCCCCcceEEEEEecCCCCccchhHHHHHHHhC--CceEEEEEec-CC-CccccC-------CcccccCccc
Q 044387 75 EFVETVLTGTYPTNITTFFVHCSRPVDLSSFHLWVCSAVRR--NAREIELYLD-QN-HRVELP-------EELYTSVSVE 143 (446)
Q Consensus 75 ~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~--~v~~L~l~~~-~~-~~~~lp-------~~l~~~~~L~ 143 (446)
.-|-..+.... .+..+.+... .-+.-..+|+..+.++ .+++..+.-. .+ ...++| ..+..|+.|+
T Consensus 20 ~~v~~~~~~~~--s~~~l~lsgn--t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 20 KDVEEELEPMD--SLTKLDLSGN--TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred hhHHHHhcccC--ceEEEeccCC--chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 33444444433 3666666543 3455678888877764 3343333211 11 112333 2344588999
Q ss_pred EEEEeceeEeecCCC-------CccCCcccEEEeeeecCCchh---hhhh---------hhcCCccceeEEEeecCC
Q 044387 144 VLKLMSDFVIKVPAG-------GTSFPNVKILSVQLESPENSL---TEKL---------FCSCPALEELSIQAYLND 201 (446)
Q Consensus 144 ~L~L~~~~~~l~~~~-------~~~~~~L~~L~L~~~~~~~~~---l~~l---------ls~cp~Le~L~l~~~~~~ 201 (446)
+|+|+. ..+.+.+ ..++..|+.|.|..|-+.... +.+. +..-|.|+.+...++...
T Consensus 96 ~ldLSD--NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 96 KLDLSD--NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred Eeeccc--cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 999998 5555422 236888999999999877654 3332 223466666666666543
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.23 E-value=1.5e-05 Score=81.41 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=43.1
Q ss_pred chhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCc
Q 044387 104 SFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPEN 177 (446)
Q Consensus 104 ~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~ 177 (446)
.+..|+.. +.+++-+.... .....+|..++...+|+.|.... +.+. +|...++.+|++|+|....+.+
T Consensus 255 ~lp~wi~~--~~nle~l~~n~--N~l~~lp~ri~~~~~L~~l~~~~--nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 255 NLPEWIGA--CANLEALNANH--NRLVALPLRISRITSLVSLSAAY--NELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred cchHHHHh--cccceEecccc--hhHHhhHHHHhhhhhHHHHHhhh--hhhhhCCCcccccceeeeeeehhccccc
Confidence 34466654 33556555544 22356666667777777777666 5443 3445569999999999987654
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.22 E-value=0.00016 Score=75.40 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=35.1
Q ss_pred cCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc--hhHHHHHHhcCCCCcEEEEEeccc
Q 044387 292 NNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG--WAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 292 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
++++.|.|+.+.+..+ +..++ .+|+.|+++.+... ...+..++..+|++..|.+..++-
T Consensus 367 ~~L~~LdLs~N~Lt~L----P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 367 PTITTLDVSRNALTNL----PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCEEECCCCcCCCC----CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 4666777766543321 11122 35777777665431 235667777788888888887663
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.21 E-value=5.6e-05 Score=64.05 Aligned_cols=103 Identities=23% Similarity=0.167 Sum_probs=34.6
Q ss_pred CceEEEEEecCCCccccCCccc-ccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELY-TSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
+.++|.++...-. .+ ..+. .+.+|+.|+|++ +.+.. ++...+++|++|+|++..+.+-. ..+..+||+|++|
T Consensus 20 ~~~~L~L~~n~I~--~I-e~L~~~l~~L~~L~Ls~--N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS--TI-ENLGATLDKLEVLDLSN--NQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TT--S--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred ccccccccccccc--cc-cchhhhhcCCCEEECCC--CCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence 4566666553221 12 2333 367888999988 55443 56667888999999888887621 2233568999999
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeec
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~ 224 (446)
.+.++...+...+..+...|.|+.|++.+++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 9988876544443311245677777777663
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.21 E-value=2.3e-05 Score=73.21 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=58.9
Q ss_pred CccchhHHHHHHHhCCceEEEEEecCCC-ccccCCcccccCcccEEEEeceeE-eecCC----CCccCCcccEEEeeeec
Q 044387 101 DLSSFHLWVCSAVRRNAREIELYLDQNH-RVELPEELYTSVSVEVLKLMSDFV-IKVPA----GGTSFPNVKILSVQLES 174 (446)
Q Consensus 101 ~~~~~~~wl~~~~~~~v~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~----~~~~~~~L~~L~L~~~~ 174 (446)
+...+...+..+- ..++++.+..+.+. ...+-....+|+++++|.+.+ | .+.+. -...+++|+.|+|..|.
T Consensus 125 ~g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~g--c~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 125 DGGVVENMISRCG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYG--CKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred CCcceehHhhhhc-cccccccccccccCCcchhhHHhhhCCchhhhhhhc--ceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 3444444443322 45777777765432 223333334588888888887 5 33332 13467788888888854
Q ss_pred C-CchhhhhhhhcCCccceeEEEeecC
Q 044387 175 P-ENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 175 ~-~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
. ++..+..+..+||+|+.|.++.|..
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 4 4444777778888888888888754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=8.4e-05 Score=69.91 Aligned_cols=127 Identities=18% Similarity=0.036 Sum_probs=80.2
Q ss_pred cCcccEEEEeceeEeecCC----CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCC
Q 044387 139 SVSVEVLKLMSDFVIKVPA----GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSST 214 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~----~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~ 214 (446)
.++|+.|.|+. ..+..| ....+++|++|.|+.|.++-.+++.++..||+|+.|.+..+......... .-...+
T Consensus 171 Lp~Le~LNls~--Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~ 247 (505)
T KOG3207|consen 171 LPSLENLNLSS--NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQT 247 (505)
T ss_pred cccchhccccc--ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhH
Confidence 56777777776 444433 13478999999999999997779999999999999999988521111111 023467
Q ss_pred cceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE---------EecCCCceEEEEEE
Q 044387 215 LKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---------VHDLNSLTDVILDI 271 (446)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---------~~~~p~L~~~~l~~ 271 (446)
|+.|+|.++.... .......-..|+|+.|.++.+....+. ....|+|+.+.+..
T Consensus 248 L~~LdLs~N~li~---~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 248 LQELDLSNNNLID---FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred HhhccccCCcccc---cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 9999998874321 111133444588888887765433221 13356666655543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.19 E-value=0.00022 Score=60.44 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=25.2
Q ss_pred hccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc--chhHHHHHHhcCCCCcEEEEEecc
Q 044387 290 RLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI--GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 290 ~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~--~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+++++.|.++.+.+..+.. ...+..+++|++|++..+.. ...+=..++..+|+|+.|+-....
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 34444444444443332211 22233444555555543221 234445678889999999665544
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.12 E-value=0.00055 Score=71.35 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=64.7
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
+-..|++.. .....+|..+. ++|+.|.+.+ ..+.. |. ..++|++|+|+++.++.- . ...++|++|.
T Consensus 202 ~~~~LdLs~--~~LtsLP~~l~--~~L~~L~L~~--N~Lt~LP~--lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGE--SGLTTLPDCLP--AHITTLVIPD--NNLTSLPA--LPPELRTLEVSGNQLTSL--P---VLPPGLLELS 268 (788)
T ss_pred CCcEEEcCC--CCCCcCCcchh--cCCCEEEccC--CcCCCCCC--CCCCCcEEEecCCccCcc--c---Ccccccceee
Confidence 444444433 23346776554 4788888887 44432 22 357889999888876542 1 1246788888
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeeccc
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIF 253 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 253 (446)
+.++... .+. -..++|+.|.+..+... .+....|+|++|+++++..
T Consensus 269 Ls~N~L~---~Lp--~lp~~L~~L~Ls~N~Lt--------~LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 269 IFSNPLT---HLP--ALPSGLCKLWIFGNQLT--------SLPVLPPGLQELSVSDNQL 314 (788)
T ss_pred ccCCchh---hhh--hchhhcCEEECcCCccc--------cccccccccceeECCCCcc
Confidence 8777543 211 22245777777766221 2222346788887776544
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00031 Score=72.63 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=94.0
Q ss_pred cCcccEEEEeceeEeecCC---CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 139 SVSVEVLKLMSDFVIKVPA---GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~---~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
-.+|++|+++|...-...+ -...||+|++|.+++..+..+++..+..++|+|..|+++++...++..+ ...++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GI---S~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGI---SRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHH---hccccH
Confidence 5789999998821111121 2457999999999999999888999999999999999998865433111 223444
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCce
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTK 295 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~ 295 (446)
+.|.+.+-.+.. . .+ +.. +-.+++|+
T Consensus 198 q~L~mrnLe~e~----------------------------------------------~----~~---l~~-LF~L~~L~ 223 (699)
T KOG3665|consen 198 QVLSMRNLEFES----------------------------------------------Y----QD---LID-LFNLKKLR 223 (699)
T ss_pred HHHhccCCCCCc----------------------------------------------h----hh---HHH-HhcccCCC
Confidence 444443321100 0 00 111 22345555
Q ss_pred EEEEEchhH----HhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEe
Q 044387 296 NLTVSYGVL----CALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 296 ~L~l~~~~~----~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
.|+++.... ..+..+. +---.+++|+.|+.+....+...+..++..-|+|+...+-.
T Consensus 224 vLDIS~~~~~~~~~ii~qYl-ec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYL-ECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred eeeccccccccchHHHHHHH-HhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 555554211 0111111 11112458899999866667788888999999888876543
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.76 E-value=0.0016 Score=68.07 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=29.1
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCC
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPE 176 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~ 176 (446)
+++.|.+..+. ...+|. ..++|++|+|++ +.+.. |. ..++|++|+|..+.+.
T Consensus 223 ~L~~L~L~~N~--Lt~LP~---lp~~Lk~LdLs~--N~LtsLP~--lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNN--LTSLPA---LPPELRTLEVSG--NQLTSLPV--LPPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCc--CCCCCC---CCCCCcEEEecC--CccCcccC--cccccceeeccCCchh
Confidence 66777665432 234553 246788888887 43332 22 2456666666665443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.71 E-value=0.00047 Score=61.89 Aligned_cols=241 Identities=18% Similarity=0.155 Sum_probs=136.1
Q ss_pred ccCCcccccCcccEEEEeceeEe--ec-----C----CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 131 ELPEELYTSVSVEVLKLMSDFVI--KV-----P----AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 131 ~lp~~l~~~~~L~~L~L~~~~~~--l~-----~----~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
.+...+--|..|+.|..++ .. +. + .+...|.+|+++..+.|.-.. +..+...=|.|+++.+.+..
T Consensus 173 d~~hildf~~~l~~l~vs~--~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTP--VKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred chHHHHHhhhheeEEEecC--CCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccc
Confidence 3333333477888888876 31 11 1 123467888888888775433 55666677999999988764
Q ss_pred CCCCC---------------------CeEEEeecC---CcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc
Q 044387 200 NDEGP---------------------TTKFVISSS---TLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK 255 (446)
Q Consensus 200 ~~~~~---------------------~~~~~i~~~---~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~ 255 (446)
..+.. .+- ...+ -|+.|+++.+... ....-..-+|.++.|.++.+....
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~--~~~dTWq~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~ 321 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSAL--VSADTWQELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRT 321 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceE--EecchHhhhhhccccccchh-----hhhhhhhhccceeEEeccccceee
Confidence 32110 000 1112 3566666654211 001112235888888887655432
Q ss_pred E-EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc-ch
Q 044387 256 F-VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI-GW 333 (446)
Q Consensus 256 ~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~-~~ 333 (446)
+ .+..+++|+++++....-.. +..+-..+-|++.|.+..+.++.++. +.++-+|..|+++.+.. ..
T Consensus 322 v~nLa~L~~L~~LDLS~N~Ls~-------~~Gwh~KLGNIKtL~La~N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 322 VQNLAELPQLQLLDLSGNLLAE-------CVGWHLKLGNIKTLKLAQNKIETLSG-----LRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred ehhhhhcccceEeecccchhHh-------hhhhHhhhcCEeeeehhhhhHhhhhh-----hHhhhhheeccccccchhhH
Confidence 2 35678888888876543221 34455567788899998888776433 33556788888876654 23
Q ss_pred hHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEeecCChhHHHHHHHH
Q 044387 334 AVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKGVEGDDDELILVDYL 401 (446)
Q Consensus 334 ~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~~~g~~~~~~l~~~l 401 (446)
+.+ .-+.+.|+|+.|.+..++-. .. .++ ...+-+-+...-..|.+.+-.+...|+.-+..+
T Consensus 390 deV-~~IG~LPCLE~l~L~~NPl~--~~--vdY--RTKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 390 DEV-NHIGNLPCLETLRLTGNPLA--GS--VDY--RTKVLARFGERASEISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred HHh-cccccccHHHHHhhcCCCcc--cc--chH--HHHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence 333 33578899999988887741 00 000 000111122333455666667777776666554
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.63 E-value=0.002 Score=44.23 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=36.4
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
++|++|+++++.. .++...+.++++|++|+|+++.+..- -...+.++|.|+.|.+++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 4577777777322 23333456777777777777766432 23456677777777777653
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.57 E-value=0.0024 Score=56.72 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=106.4
Q ss_pred CccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeeccccccccccee
Q 044387 159 GTSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYK 235 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~ 235 (446)
...||+|++.+|+...|.... +..++++...|++|.+.+|..+....-+ +. ..|.+| +...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r--ig-kal~~l-------------a~nK 151 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR--IG-KALFHL-------------AYNK 151 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhH--HH-HHHHHH-------------HHHh
Confidence 456778888888888776654 8899999999999999998643111111 10 001110 0112
Q ss_pred EEEecCCceEEEeeecccCcE-------EEecCCCceEEEEEEEeCccccCChhhHHHH--HHhccCceEEEEEchhHHh
Q 044387 236 VRITAPSLERLHIMSDIFGKF-------VVHDLNSLTDVILDIVYGEWSRVDPNRAIQL--LQRLNNTKNLTVSYGVLCA 306 (446)
Q Consensus 236 ~~i~ap~L~~L~l~~~~~~~~-------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~--l~~l~~l~~L~l~~~~~~~ 306 (446)
-..++|.|+.+.+..+..... .+.+--.|.++.+........+.. +..+ +..+++++.|+|..+++..
T Consensus 152 Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~---~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT---MLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH---HHHHHHHHHhCcceeeeccccchhh
Confidence 345678888887655432211 122235666776654322211111 2222 3457889999999887755
Q ss_pred hhc-ccccccCccccceeEEEEecccchhHHHHHHhc-----CCCCcEEEEEecc
Q 044387 307 LDH-AYHIWFPALSHLQHLEVAVGAIGWAVLPVILSS-----SQNLQSLILRKQS 355 (446)
Q Consensus 307 ~~~-~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~-----~p~L~~L~i~~~~ 355 (446)
... +....++.+++|+.|.+.-|-.+..+...+++. .|+|..|-.+-+.
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 432 225667888889999998776666666777766 4777777665544
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.00025 Score=71.20 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=32.7
Q ss_pred CcccCCCChHHHHHHhccCCccceeeecccccchHHHhcc
Q 044387 9 ADWISALPDSVLCHILSYLPTKNAVATSLLARRWKLVWTS 48 (446)
Q Consensus 9 ~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw~~ 48 (446)
.+.....|+.....+....+..+...+..++++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3556678889999999999999999999999999876544
No 38
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.92 E-value=0.00016 Score=59.48 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=31.9
Q ss_pred cccCCcccccCcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
...|+.+-...+|+.|.+.+ ..+. ++...++|+|+.|++.-..+.. +-+-+.++|.||.|++.++.
T Consensus 46 ~~vppnia~l~nlevln~~n--nqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSN--NQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred eecCCcHHHhhhhhhhhccc--chhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhccccc
Confidence 34455455555566666555 3332 1234456666666554332221 22223445666666665543
No 39
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.52 E-value=0.0014 Score=57.84 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=70.6
Q ss_pred cCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcc
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 216 (446)
...|..|++.+ +.+.. .++-.+|+|++|.++...+.... +.-++..||+|++|.++.+....+..++-.-..++|.
T Consensus 42 ~~~le~ls~~n--~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVIN--VGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhc--cceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 55677777777 65543 45667889999999999665544 7777788999999999998765333332111235688
Q ss_pred eEEEeeecccccccccceeEEEecCCceEEEeeec
Q 044387 217 RCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSD 251 (446)
Q Consensus 217 ~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~ 251 (446)
.|.+.+|.... .+.....+..-+|+|++|+..+.
T Consensus 120 ~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 88888885332 11111233344567777765543
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.50 E-value=0.0096 Score=37.71 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=23.9
Q ss_pred CcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 163 PNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
++|++|+|+++.+.+ +...++.||.|+.|.++++..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 467777777777765 555567788888888877754
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.41 E-value=0.037 Score=37.85 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=41.9
Q ss_pred CceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeec
Q 044387 116 NAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLES 174 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~ 174 (446)
+++.|.+.. .....+|...|. +++|++|+++++.. .+++..+.++++|++|+|+++.
T Consensus 2 ~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS--STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC--CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455666654 345678877775 99999999998433 4445567899999999998875
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.33 E-value=0.0029 Score=63.48 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=22.1
Q ss_pred cccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecc
Q 044387 318 LSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 318 ~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+++|++|++..+.. ...++..++++||+|++|.+....
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 34566666665544 455566666667776666554443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.74 E-value=0.026 Score=51.06 Aligned_cols=132 Identities=18% Similarity=0.175 Sum_probs=61.5
Q ss_pred cCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccc
Q 044387 292 NNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDI 371 (446)
Q Consensus 292 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~ 371 (446)
..++.++++.+.+..+.. ...-.+.++.|.++.+... .+.+ |+..|+|+.|+++.+... ...||..+..
T Consensus 284 q~LtelDLS~N~I~~iDE----SvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~Ls----~~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDE----SVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNLLA----ECVGWHLKLG 352 (490)
T ss_pred hhhhhccccccchhhhhh----hhhhccceeEEecccccee--eehh-hhhcccceEeecccchhH----hhhhhHhhhc
Confidence 345666666665554321 1222346666666654431 1112 556677777777765532 1123322110
Q ss_pred -c---------Ccc-----cccceEEEEEEeecCChhHHHHHHHHHhcCccccceEEEeecCCChhHHHHHH-HHHhhc-
Q 044387 372 -V---------PNC-----LLQHVKKIEIKGVEGDDDELILVDYLLKYSSVLEVMVICFKGSVSKQERRDIG-RSILQV- 434 (446)
Q Consensus 372 -~---------~~c-----~~~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~~~~~~~~~~~~-~~L~~~- 434 (446)
+ .+- -+-+|..+...+ ....+++=++.+ .+.|+||.+.+..++-... .+.+ +-|..+
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~--N~Ie~ldeV~~I-G~LPCLE~l~L~~NPl~~~---vdYRTKVLa~FG 426 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSS--NQIEELDEVNHI-GNLPCLETLRLTGNPLAGS---VDYRTKVLARFG 426 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccc--cchhhHHHhccc-ccccHHHHHhhcCCCcccc---chHHHHHHHHHh
Confidence 0 000 011233332221 123345555555 6788888888876654332 1222 334444
Q ss_pred cccCCc
Q 044387 435 QRASNR 440 (446)
Q Consensus 435 ~r~S~~ 440 (446)
.|||.-
T Consensus 427 ERaSE~ 432 (490)
T KOG1259|consen 427 ERASEI 432 (490)
T ss_pred hhhhhe
Confidence 666643
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.52 E-value=0.016 Score=60.32 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=82.9
Q ss_pred CCceEEEeeecccC-----cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccccccc
Q 044387 241 PSLERLHIMSDIFG-----KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWF 315 (446)
Q Consensus 241 p~L~~L~l~~~~~~-----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 315 (446)
.+|++|+++|.... .-...-+|+|+.+.+.+..- ...++..+..+|++|.+|+|++..+..+ ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTNISNL-----SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCCccCc-----HHH
Confidence 35666666653221 11122467777776655432 1222677788888888888887655543 223
Q ss_pred CccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEeecCChhH
Q 044387 316 PALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKGVEGDDDE 394 (446)
Q Consensus 316 p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~~~g~~~~ 394 (446)
..++||+.|.+..-.. ....+.. |-+..+|+.|+|+.........-..-+ -+|. .-|-.+.+..+.|..-.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qY------lec~-~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQY------LECG-MVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHH------HHhc-ccCccccEEecCCcchh
Confidence 3556666666653222 2222222 334778888888876642111000001 2332 12344445555566555
Q ss_pred HHHHHHHHhcCccccceEEE
Q 044387 395 LILVDYLLKYSSVLEVMVIC 414 (446)
Q Consensus 395 ~~l~~~ll~~a~~Le~m~i~ 414 (446)
-++++.++..=|+|+++...
T Consensus 264 ~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 264 EEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHHHHhCccHhhhhhh
Confidence 57777777766777776643
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.51 E-value=0.0016 Score=65.48 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=38.6
Q ss_pred CCcceEEEEEecCCCCccc---hhHHHHHHHhCCceEEEEE-ecCCCccccCCcccccCcccEEEEeceeEeecC
Q 044387 86 PTNITTFFVHCSRPVDLSS---FHLWVCSAVRRNAREIELY-LDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP 156 (446)
Q Consensus 86 ~~~l~~l~l~~~~~~~~~~---~~~wl~~~~~~~v~~L~l~-~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~ 156 (446)
+++++.|........+... +.+.++..-. .+.+.+- .+..++.+ |-.+|...+|++|.|.+ |.+..
T Consensus 54 g~~~~~f~a~~s~~ads~vl~qLq~i~d~lqk--t~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg--~~L~~ 123 (1096)
T KOG1859|consen 54 GAPVDYFRAYVSDNADSRVLEQLQRILDFLQK--TKVLKLLPSPARDPTE-PISIFPFRSLRVLELRG--CDLST 123 (1096)
T ss_pred CCCCceeEEecCCcccchHHHHHHHHHHHHhh--heeeeecccCCCCCCC-CceeccccceeeEEecC--cchhh
Confidence 4789999988874444333 3344443322 2333331 12222333 77788889999999999 76543
No 46
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.21 E-value=0.0019 Score=60.48 Aligned_cols=29 Identities=10% Similarity=-0.014 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCccccceEEEeecCCCh
Q 044387 393 DELILVDYLLKYSSVLEVMVICFKGSVSK 421 (446)
Q Consensus 393 ~~~~l~~~ll~~a~~Le~m~i~~~~~~~~ 421 (446)
+.++.+--.+.|+++|+.+.++..+-..+
T Consensus 515 Ndlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 515 NDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred CchhhCChhhccccceeEEEecCCccCCC
Confidence 46788889999999999999998865544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.017 Score=52.17 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecC
Q 044387 163 PNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAP 241 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap 241 (446)
..|+-|.|.++.+.... +..+-+.|..+++|+|..+...+...+ ..+....|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI---------------------------~~ile~lP 97 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI---------------------------GAILEQLP 97 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH---------------------------HHHHhcCc
Confidence 35667888888887765 888888999999999988764322111 12333345
Q ss_pred CceEEEeeecccCcEEEecCC----CceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcc--ccccc
Q 044387 242 SLERLHIMSDIFGKFVVHDLN----SLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHA--YHIWF 315 (446)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~~~p----~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~--~~~~~ 315 (446)
.|+.|+++.....+ .+...| +|..+-+.+..-. +.. ...++..++.++.|+++.+.+..+... +.+.
T Consensus 98 ~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~---w~~--~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~- 170 (418)
T KOG2982|consen 98 ALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLS---WTQ--STSSLDDLPKVTELHMSDNSLRQLNLDDNCIED- 170 (418)
T ss_pred cceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCC---hhh--hhhhhhcchhhhhhhhccchhhhhccccccccc-
Confidence 55555555433321 122222 3333333222111 111 456677778888888887755443222 1222
Q ss_pred CccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecc
Q 044387 316 PALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 316 p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.=+.++.|+...|.. .+..+..+-+.+|++..+.+--++
T Consensus 171 -~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 171 -WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred -cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 112455566555543 567778888999999988887664
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.82 E-value=0.016 Score=53.02 Aligned_cols=37 Identities=41% Similarity=0.716 Sum_probs=34.7
Q ss_pred cCcccCCCC----hHHHHHHhccCCccceeeecccccchHH
Q 044387 8 KADWISALP----DSVLCHILSYLPTKNAVATSLLARRWKL 44 (446)
Q Consensus 8 ~~D~is~LP----d~vL~~Ils~L~~~~~~r~s~lsrrWr~ 44 (446)
..|-|..|| |+|-..|||+|+..+++.+-.+||+|+.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 358899999 9999999999999999999999999995
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.70 E-value=0.046 Score=34.56 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=26.3
Q ss_pred CcccEEEEeceeEeecC-CC-CccCCcccEEEeeeecCCc
Q 044387 140 VSVEVLKLMSDFVIKVP-AG-GTSFPNVKILSVQLESPEN 177 (446)
Q Consensus 140 ~~L~~L~L~~~~~~l~~-~~-~~~~~~L~~L~L~~~~~~~ 177 (446)
++|++|+|++ ..+.. |+ ...+++|+.|+|+++.+.+
T Consensus 1 ~~L~~L~l~~--N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN--NQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETS--SS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccC--CCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4688888888 55543 44 7789999999999888775
No 50
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.98 E-value=0.032 Score=50.64 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=30.6
Q ss_pred cccCCCChHHHHHHhcc-----CCccceeeecccccchHH
Q 044387 10 DWISALPDSVLCHILSY-----LPTKNAVATSLLARRWKL 44 (446)
Q Consensus 10 D~is~LPd~vL~~Ils~-----L~~~~~~r~s~lsrrWr~ 44 (446)
+.|+.||||||..||.+ |+.++..++|+|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 55789999999999974 467999999999999985
No 51
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.92 E-value=0.037 Score=52.55 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=33.0
Q ss_pred cCCCChHHHHHHhccCCc-cceeeecccccchHHHhcc
Q 044387 12 ISALPDSVLCHILSYLPT-KNAVATSLLARRWKLVWTS 48 (446)
Q Consensus 12 is~LPd~vL~~Ils~L~~-~~~~r~s~lsrrWr~lw~~ 48 (446)
.++||+|+|..|..+|+. -|.+|-+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 578999999999999986 5999999999999986543
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.86 E-value=0.012 Score=48.84 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=58.0
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSI 195 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l 195 (446)
+++.+.+.. ....++|..+.+.+.|+.|.++-+.....+.++++||.|+.|+|.+..+....+-.=+-....|+-|.+
T Consensus 57 nlevln~~n--nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 57 NLEVLNLSN--NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhccc--chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 455555544 445689999999999999999874344456689999999999999998776543222222455666666
Q ss_pred EeecC
Q 044387 196 QAYLN 200 (446)
Q Consensus 196 ~~~~~ 200 (446)
.++.+
T Consensus 135 ~dndf 139 (264)
T KOG0617|consen 135 GDNDF 139 (264)
T ss_pred cCCCc
Confidence 66554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.86 E-value=0.2 Score=42.94 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=35.1
Q ss_pred cCcccEEEEecee-EeecCCCCccCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecC
Q 044387 139 SVSVEVLKLMSDF-VIKVPAGGTSFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 139 ~~~L~~L~L~~~~-~~l~~~~~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~ 200 (446)
.+.|.+|.|.++. +.+.+.-...+|+|++|.|.+.++..-+ ++. +..||.|+.|++-++..
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 5667777777632 2333333345667777777776665432 332 34577777777766544
No 54
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.06 E-value=0.049 Score=56.74 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred CccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 316 PALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 316 p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
|.-.||++++++.... ..++..+..|++|+.+.+..+.
T Consensus 238 p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cccccceeeecchhhh--hcchHHHHhcccceEecccchh
Confidence 3446888888876543 3455778889999999887766
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.64 E-value=0.043 Score=53.65 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=96.9
Q ss_pred cCcccEEEEeceeEeecC-CCCccCC--cccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFP--NVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~--~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
.+.++.|.+.+ ..+.. +....+. +|+.|++++..+..- ..-+..+|.|+.|.+.++...+..... ...+.|
T Consensus 115 ~~~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLSNL 188 (394)
T ss_pred ccceeEEecCC--cccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhh--hhhhhh
Confidence 46688888887 44332 3333333 899999988877652 234678999999999999765443322 367788
Q ss_pred ceEEEeeecccccccccceeEEE--ecCC-ceEEEeeecccC--cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHh
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRI--TAPS-LERLHIMSDIFG--KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQR 290 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i--~ap~-L~~L~l~~~~~~--~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 290 (446)
+.|.+.++... .+.. ..++ |+++.+...... ...+...+.+..+.+...... + ....+..
T Consensus 189 ~~L~ls~N~i~--------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~----~---~~~~~~~ 253 (394)
T COG4886 189 NNLDLSGNKIS--------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE----D---LPESIGN 253 (394)
T ss_pred hheeccCCccc--------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee----e---ccchhcc
Confidence 88888887321 2222 2344 788877765311 122334444444442111100 0 1245666
Q ss_pred ccCceEEEEEchhHHhhhcccccccCccccceeEEEEe
Q 044387 291 LNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAV 328 (446)
Q Consensus 291 l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~ 328 (446)
+++++.|.++.+.+..+ ..+..+.++++|++..
T Consensus 254 l~~l~~L~~s~n~i~~i-----~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQISSI-----SSLGSLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccccccc-----ccccccCccCEEeccC
Confidence 77788888877655542 1145566777777764
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.64 E-value=0.35 Score=41.48 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=50.3
Q ss_pred CcccEEEEeceeEee-cCCCCccCCcccEEEeeeecCCchh--hhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcc
Q 044387 140 VSVEVLKLMSDFVIK-VPAGGTSFPNVKILSVQLESPENSL--TEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 140 ~~L~~L~L~~~~~~l-~~~~~~~~~~L~~L~L~~~~~~~~~--l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 216 (446)
.....++|+. ..+ ..+.+.++++|.+|.|....++.=+ +.. ..|+|..|.+.++..-.+..+.=+..+|+|+
T Consensus 42 d~~d~iDLtd--Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTD--NDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccc--cchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccc
Confidence 3445566665 433 2356678899999999999887632 333 3588999999887543333332124566777
Q ss_pred eEEEeee
Q 044387 217 RCTLWVA 223 (446)
Q Consensus 217 ~L~l~~~ 223 (446)
.|++..+
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 7777665
No 57
>PLN03150 hypothetical protein; Provisional
Probab=91.01 E-value=0.19 Score=52.27 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=55.2
Q ss_pred ccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceE
Q 044387 142 VEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRC 218 (446)
Q Consensus 142 L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 218 (446)
++.|+|.+ +.+.. +....+++|+.|+|+++.+.+. +...+..++.|+.|+|++|...+...-. +-..++|+.|
T Consensus 420 v~~L~L~~--n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDN--QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRIL 495 (623)
T ss_pred EEEEECCC--CCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEE
Confidence 67788887 44432 2456788999999998877643 4445678899999999988764321111 1345789999
Q ss_pred EEeeeccc
Q 044387 219 TLWVATEG 226 (446)
Q Consensus 219 ~l~~~~~~ 226 (446)
.+.++...
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 99887443
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=0.015 Score=52.02 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=51.4
Q ss_pred CceEEEeeecccCcEEE-ecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCcccc
Q 044387 242 SLERLHIMSDIFGKFVV-HDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSH 320 (446)
Q Consensus 242 ~L~~L~l~~~~~~~~~~-~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~ 320 (446)
+.+.|+++|+....+.+ ..+|.|+.+.+....... + .-+..|++|+.|.|.-+.+..+.. ...+..+++
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--L------~pl~rCtrLkElYLRkN~I~sldE--L~YLknlps 89 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--L------APLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS 89 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccccc--c------hhHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence 34445555544443332 346666666655443321 1 124555666666555444433211 223334455
Q ss_pred ceeEEEEec--cc--chhHHHHHHhcCCCCcEEEEEe
Q 044387 321 LQHLEVAVG--AI--GWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 321 L~~L~l~~~--~~--~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
|+.|=|.-+ .. ....=...|+..|||++|+=.-
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 666555422 11 3445567889999999986443
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=0.0028 Score=56.53 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=45.7
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
+++.|.++.+....+.+ ....+.|.+|.|+- ..+.. ..+..|++|++|+|+...+.+-+=..-+.+.|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSv--NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSV--NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeec--cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45555555544332222 11346677777776 33332 34556777777777777777655334466777777777
Q ss_pred EEee
Q 044387 195 IQAY 198 (446)
Q Consensus 195 l~~~ 198 (446)
|..+
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 7664
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.68 E-value=0.23 Score=44.62 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=114.2
Q ss_pred cCcccEEEEeceeEeecCC-------CCccCCcccEEEeeeecCCch--h-------hhhhhhcCCccceeEEEeecCCC
Q 044387 139 SVSVEVLKLMSDFVIKVPA-------GGTSFPNVKILSVQLESPENS--L-------TEKLFCSCPALEELSIQAYLNDE 202 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~-------~~~~~~~L~~L~L~~~~~~~~--~-------l~~lls~cp~Le~L~l~~~~~~~ 202 (446)
..+++.++|+| ..+... ....-.+|+.-++++....-. . +...+..||.|+...|+++.+.
T Consensus 29 ~d~~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg- 105 (388)
T COG5238 29 MDELVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG- 105 (388)
T ss_pred hcceeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-
Confidence 67889999999 444331 123456777777777643321 1 3444558999999999998764
Q ss_pred CCCe----EEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCcccc
Q 044387 203 GPTT----KFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSR 278 (446)
Q Consensus 203 ~~~~----~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~ 278 (446)
.... .++..+..|++|.+.+|. .+.+ + .-.| +..|.+|.+.. ...+.|.|+.+...-. ....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~--a--G~ri-gkal~~la~nK------Kaa~kp~Le~vicgrN--Rlen 171 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPI--A--GGRI-GKALFHLAYNK------KAADKPKLEVVICGRN--RLEN 171 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCcc--c--hhHH-HHHHHHHHHHh------hhccCCCceEEEeccc--hhcc
Confidence 2111 111345678999998882 2110 0 0000 11233332221 3456777877654321 1111
Q ss_pred CChhhHHHHHHhccCceEEEEEchhHHhhhccc--ccccCccccceeEEEEeccc---chhHHHHHHhcCCCCcEEEEEe
Q 044387 279 VDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAY--HIWFPALSHLQHLEVAVGAI---GWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 279 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~--~~~~p~~~~L~~L~l~~~~~---~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
....-....++.-.+++.+.+..+++.--.... ...+...++|+.|++.-+.. ....+...+...|.|++|.+..
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 111113344555568999999887664210011 22233557888999874432 5667888888899999998887
Q ss_pred ccc
Q 044387 354 QSR 356 (446)
Q Consensus 354 ~~~ 356 (446)
|..
T Consensus 252 Cll 254 (388)
T COG5238 252 CLL 254 (388)
T ss_pred hhh
Confidence 764
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=87.67 E-value=0.15 Score=54.80 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=32.5
Q ss_pred cccCCcccccCcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEee
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAY 198 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~ 198 (446)
..||..+...-+|+.|+|++ ..+. +.+...+..|.+|++........ +..+....++|+.|.+...
T Consensus 585 ~~LP~~I~~Li~LryL~L~~--t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSD--TGISHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CcCChHHhhhhhhhcccccC--CCccccchHHHHHHhhheecccccccccc-ccchhhhcccccEEEeecc
Confidence 44555555555555555555 3322 22344455555555554432211 1333444566777666554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.72 E-value=0.76 Score=44.49 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=62.9
Q ss_pred ccCcccEEEEeceeEeecC-CCCccCC-cccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 138 TSVSVEVLKLMSDFVIKVP-AGGTSFP-NVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~-~~~~~~~-~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
.|..+++|++++ |.+.. | .+| +|++|.+.++.-... +-..+ .++|+.|.+.+|.. + . .-.++|
T Consensus 50 ~~~~l~~L~Is~--c~L~sLP---~LP~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~Cs~--L---~--sLP~sL 114 (426)
T PRK15386 50 EARASGRLYIKD--CDIESLP---VLPNELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHCPE--I---S--GLPESV 114 (426)
T ss_pred HhcCCCEEEeCC--CCCcccC---CCCCCCcEEEccCCCCccc-CCchh--hhhhhheEccCccc--c---c--cccccc
Confidence 478899999999 65443 3 344 699999987643211 11112 46899999998843 1 1 223568
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccC-cEEE--ecCCCceEEEEEEE
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG-KFVV--HDLNSLTDVILDIV 272 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~~~--~~~p~L~~~~l~~~ 272 (446)
+.|.+..... ..+..-.++|++|.+.+.... ...+ .-.++|+.+.+..+
T Consensus 115 e~L~L~~n~~--------~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c 166 (426)
T PRK15386 115 RSLEIKGSAT--------DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGC 166 (426)
T ss_pred ceEEeCCCCC--------cccccCcchHhheeccccccccccccccccCCcccEEEecCC
Confidence 8888764311 123334457777776432211 0000 11256777777543
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=0.087 Score=45.06 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred cccCCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCch-hhhhhhhcCCccceeEEEeecCCCCCC
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENS-LTEKLFCSCPALEELSIQAYLNDEGPT 205 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~-~l~~lls~cp~Le~L~l~~~~~~~~~~ 205 (446)
+.+|..-..--.++.++=++ +.+.. .....++.++.|.+..|..-++ .++.+-...|+|++|+|+.|.-.....
T Consensus 91 ~~lp~~~~~~~~IeaVDAsd--s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 91 FSLPGPNADNVKIEAVDASD--SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ecCCCCCCCcceEEEEecCC--chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 35554322223344444444 33222 2344677788888888865444 488877788999999999886421111
Q ss_pred eEEEeecCCcceEEEeee
Q 044387 206 TKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 206 ~~~~i~~~~L~~L~l~~~ 223 (446)
+.-+...++|+.|.+.+-
T Consensus 169 L~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHHhhhhHHHHhcCc
Confidence 110123355555555543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.02 E-value=2.1 Score=41.52 Aligned_cols=132 Identities=13% Similarity=0.041 Sum_probs=70.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeE-eec-CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFV-IKV-PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
++.++|.+..+. ...+|. --++|++|.+++ | .+. .|+. -.++|++|++.+|... .. --+.|+.
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsn--c~nLtsLP~~-LP~nLe~L~Ls~Cs~L----~s---LP~sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITIEN--CNNLTTLPGS-IPEGLEKLTVCHCPEI----SG---LPESVRS 116 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEccC--CCCcccCCch-hhhhhhheEccCcccc----cc---cccccce
Confidence 678888887652 344552 123699999998 5 332 2332 2468999999987421 11 1357888
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILD 270 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~ 270 (446)
|.+..... ..+. .-.++|+.|.+..+.... ....-..-.++|++|.+.++......-.-.++|+.+.+.
T Consensus 117 L~L~~n~~---~~L~--~LPssLk~L~I~~~n~~~----~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSAT---DSIK--NVPNGLTSLSINSYNPEN----QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred EEeCCCCC---cccc--cCcchHhheecccccccc----ccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 88864332 2223 334567777774331100 000001123578888877655321111123466666654
No 65
>PLN03150 hypothetical protein; Provisional
Probab=82.92 E-value=0.74 Score=47.87 Aligned_cols=84 Identities=10% Similarity=-0.013 Sum_probs=54.6
Q ss_pred cccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCc
Q 044387 164 NVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSL 243 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L 243 (446)
.++.|+|..+.+.+. +..-++.++.|+.|.|.++...+...-. +...++|+.|.+.++...+.. ....-..++|
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i----P~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSI----PESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCC----chHHhcCCCC
Confidence 478888888877543 4445778899999999988654221111 134578999999888543321 1122356789
Q ss_pred eEEEeeeccc
Q 044387 244 ERLHIMSDIF 253 (446)
Q Consensus 244 ~~L~l~~~~~ 253 (446)
+.|+++++..
T Consensus 493 ~~L~Ls~N~l 502 (623)
T PLN03150 493 RILNLNGNSL 502 (623)
T ss_pred CEEECcCCcc
Confidence 9999887654
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.75 E-value=0.42 Score=48.39 Aligned_cols=39 Identities=31% Similarity=0.614 Sum_probs=36.4
Q ss_pred ccCcccCCCChHHHHHHhccCCccceeeecccccchHHH
Q 044387 7 VKADWISALPDSVLCHILSYLPTKNAVATSLLARRWKLV 45 (446)
Q Consensus 7 ~~~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~l 45 (446)
...|.|+.||-|+-.+||++|+.++.+.++.+|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 467999999999999999999999999999999999964
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=80.03 E-value=0.52 Score=46.01 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=93.2
Q ss_pred CceEEEEEecCCCccccCCcccccC-cccEEEEeceeEeecC--CCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 116 NAREIELYLDQNHRVELPEELYTSV-SVEVLKLMSDFVIKVP--AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
.+..+.+.. .....+|......+ +|+.|++.+ ..+.. .....+++|+.|++....+.+ +.......+.|+.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~--N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSD--NKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNN 190 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhcccccccc--cchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhh
Confidence 344444433 33466777666664 899999998 54443 356789999999999988776 3344447899999
Q ss_pred eEEEeecCCCCCCeEEEeecC-CcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc--EEEecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSS-TLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK--FVVHDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~-~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l 269 (446)
|.++++....+... +..+ .|+.|.+....... .....-...++..+.+....... ..+..+++++.+++
T Consensus 191 L~ls~N~i~~l~~~---~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 191 LDLSGNKISDLPPE---IELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred eeccCCccccCchh---hhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence 99999875432221 1123 37777777652100 00111122333334332222211 23455666666665
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEch
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYG 302 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 302 (446)
....... +.. +..+.+++.|.+++.
T Consensus 263 s~n~i~~-------i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SNNQISS-------ISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccc-------ccc-ccccCccCEEeccCc
Confidence 4332211 122 556677778887764
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=2.2 Score=36.75 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=9.9
Q ss_pred ccccceEEEeecCCCh
Q 044387 406 SVLEVMVICFKGSVSK 421 (446)
Q Consensus 406 ~~Le~m~i~~~~~~~~ 421 (446)
++|+++.|..-+.+..
T Consensus 176 knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhHHHHhcCchhhhc
Confidence 5666666666655554
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.97 E-value=1.3 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=11.3
Q ss_pred CCcccEEEeeeec-CCchhhhh
Q 044387 162 FPNVKILSVQLES-PENSLTEK 182 (446)
Q Consensus 162 ~~~L~~L~L~~~~-~~~~~l~~ 182 (446)
+++|++|+|++|. ++|.++..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHH
Confidence 3556666666664 44444443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.08 E-value=0.72 Score=41.18 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=12.3
Q ss_pred eEEEecCCceEEEeeeccc
Q 044387 235 KVRITAPSLERLHIMSDIF 253 (446)
Q Consensus 235 ~~~i~ap~L~~L~l~~~~~ 253 (446)
.+...+|+|+++++++...
T Consensus 85 vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 85 VLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ehhhhCCceeEEeecCCcc
Confidence 4555567777777776543
No 71
>PF13013 F-box-like_2: F-box-like domain
Probab=76.74 E-value=1 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=26.7
Q ss_pred ccCCCChHHHHHHhccCCccceeeeccccc
Q 044387 11 WISALPDSVLCHILSYLPTKNAVATSLLAR 40 (446)
Q Consensus 11 ~is~LPd~vL~~Ils~L~~~~~~r~s~lsr 40 (446)
.+.+||+||+..|+.+-+..+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 578999999999999999999888877776
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.31 E-value=0.64 Score=44.22 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=29.3
Q ss_pred ccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 317 ALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.+++|+.|++.- .+...++.++.+|.+|++|+|.+++.
T Consensus 503 nm~nL~tLDL~n--Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 503 NMRNLTTLDLQN--NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhcceeccCC--CchhhCChhhccccceeEEEecCCcc
Confidence 456677777743 35677888999999999999999874
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.70 E-value=1.3 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.9
Q ss_pred CcccEEEeeeecCCchhh
Q 044387 163 PNVKILSVQLESPENSLT 180 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l 180 (446)
++|++|+|+++.++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566667776666655543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=71.95 E-value=2.4 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=3.8
Q ss_pred cccEEEeeeec
Q 044387 164 NVKILSVQLES 174 (446)
Q Consensus 164 ~L~~L~L~~~~ 174 (446)
+|+.|+|+++.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444433
No 75
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=68.05 E-value=2.1 Score=46.21 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=26.0
Q ss_pred ccccceeEEEEecc-cchhHHHHHHhcCCCCcEEEEEecc
Q 044387 317 ALSHLQHLEVAVGA-IGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 317 ~~~~L~~L~l~~~~-~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+++|++|.+.... ..+.....-+....+|+.|++....
T Consensus 640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred hcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 46788888886554 3444455555777788888776655
No 76
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=63.93 E-value=36 Score=27.35 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=74.0
Q ss_pred HHHHHHHhhccCCCCcceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCccc--ccCcccEEEEece
Q 044387 73 FEEFVETVLTGTYPTNITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELY--TSVSVEVLKLMSD 150 (446)
Q Consensus 73 ~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~ 150 (446)
|.+.+...|.......+++|.+... +...+...+...-...+++|.+ ........+...+. ..++++.+.+.+
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~~---~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~~i~~- 77 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINSL---NQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEFKIGG- 77 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEcC---CHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceeheeEecc-
Confidence 4566677777733357888888754 4567888888877788999999 22222223332222 278888988887
Q ss_pred eEeecCCCCccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEE
Q 044387 151 FVIKVPAGGTSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSI 195 (446)
Q Consensus 151 ~~~l~~~~~~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l 195 (446)
..........|.++....+..-.++.++ +.+.+...|.++...+
T Consensus 78 -~~~~~~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 78 -FVIDSFPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred -cccccHHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 4332224456777777777666676655 5555556677777766
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.29 E-value=16 Score=28.63 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=31.2
Q ss_pred cCCcccc-cCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEe
Q 044387 132 LPEELYT-SVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQA 197 (446)
Q Consensus 132 lp~~l~~-~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~ 197 (446)
++...|. |.+|+.+.+....-.+....+..+++|+.+.+... +..- -...+.+|+.|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc
Confidence 3444454 67888888775333555556667777888877653 2221 133466777777777743
No 78
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=57.01 E-value=16 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred ccceeEEEE-eccc--chhHHHHHHhcCCCCcEEEEE
Q 044387 319 SHLQHLEVA-VGAI--GWAVLPVILSSSQNLQSLILR 352 (446)
Q Consensus 319 ~~L~~L~l~-~~~~--~~~~l~~lL~~~p~L~~L~i~ 352 (446)
++|+.+.+. +.+. +..-+..++++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 578888886 3332 566778899999999999986
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=54.06 E-value=2.2 Score=42.00 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=40.5
Q ss_pred cccCcccEEEEeceeEeecC-CC-CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCC
Q 044387 137 YTSVSVEVLKLMSDFVIKVP-AG-GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSST 214 (446)
Q Consensus 137 ~~~~~L~~L~L~~~~~~l~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~ 214 (446)
....+|..|.+.. ..+.. .+ ...+++|+.|+|++..+.+-. -++.++.|+.|.+.++.......+. ..+.
T Consensus 92 ~~~~~l~~l~l~~--n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~l~~N~i~~~~~~~---~l~~ 163 (414)
T KOG0531|consen 92 SKLKSLEALDLYD--NKIEKIENLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLKELNLSGNLISDISGLE---SLKS 163 (414)
T ss_pred ccccceeeeeccc--cchhhcccchhhhhcchheecccccccccc---chhhccchhhheeccCcchhccCCc---cchh
Confidence 3456666666666 33332 22 455667777777666665532 1222344666666666543332222 1444
Q ss_pred cceEEEeee
Q 044387 215 LKRCTLWVA 223 (446)
Q Consensus 215 L~~L~l~~~ 223 (446)
|+.+.+..+
T Consensus 164 L~~l~l~~n 172 (414)
T KOG0531|consen 164 LKLLDLSYN 172 (414)
T ss_pred hhcccCCcc
Confidence 555555544
No 80
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=50.58 E-value=4.8 Score=41.69 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 159 GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
..-++.|+.|+|+++.+.+-+ .+..||.|++|+|.++....+..+. ...-.|..|.+.++
T Consensus 183 Lqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCKLQLLNLRNN 242 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccc--hhhhhheeeeeccc
Confidence 345678888888888877643 4567888888888887654333333 22223555555555
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.28 E-value=12 Score=20.69 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.1
Q ss_pred CcccEEEeeeecCCchhh
Q 044387 163 PNVKILSVQLESPENSLT 180 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l 180 (446)
++|++|+|+++.+.++..
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 578888888888887663
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=45.87 E-value=8.6 Score=37.82 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=32.9
Q ss_pred CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 159 GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
...+.+|+.|+|.+..+.. +...++.|++|+.|+++++....+..+. ..+.|+.|.+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELNLSGN 150 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchh---hccchhhheeccC
Confidence 3456666666666665544 3333556667777777666554333322 1223666666665
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=45.33 E-value=7.7 Score=37.14 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=24.6
Q ss_pred cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 139 SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 139 ~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
.++|+.|+|+++.. .+.+..+.+...|++|.|....+..- -..++.+...|+.|+|.++.
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCe
Confidence 44555555555221 11222344444555555544433221 12223334445555555443
No 84
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=44.46 E-value=11 Score=28.36 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred cccCCCChHHHHHHhccCCcccee
Q 044387 10 DWISALPDSVLCHILSYLPTKNAV 33 (446)
Q Consensus 10 D~is~LPd~vL~~Ils~L~~~~~~ 33 (446)
..++.||.|+-..||++|+-+|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 678899999999999999988753
No 85
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=44.29 E-value=39 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.1
Q ss_pred ccceeEEEEec-c--cchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 319 SHLQHLEVAVG-A--IGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 319 ~~L~~L~l~~~-~--~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.+|+.+.+... + .....+..+|+++|.|+++.|.....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 35677777532 2 25677888999999999999988663
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=43.13 E-value=6.5 Score=37.63 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=40.9
Q ss_pred CceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeee-ecCC
Q 044387 116 NAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQL-ESPE 176 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~-~~~~ 176 (446)
...+|.++- +....+|...|. .++|+.|+|+.+.. .+.+..+.++++|.+|.+.+ ..+.
T Consensus 68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 444454444 456778988887 89999999998443 33344577888888888887 4443
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=37.41 E-value=14 Score=18.98 Aligned_cols=8 Identities=38% Similarity=0.493 Sum_probs=4.3
Q ss_pred ccEEEEec
Q 044387 142 VEVLKLMS 149 (446)
Q Consensus 142 L~~L~L~~ 149 (446)
|++|+|++
T Consensus 2 L~~Ldls~ 9 (22)
T PF00560_consen 2 LEYLDLSG 9 (22)
T ss_dssp ESEEEETS
T ss_pred ccEEECCC
Confidence 45555555
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=33.74 E-value=6.4 Score=35.32 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=39.5
Q ss_pred CcccCCCChHHHHHHhccCC-ccceeeecccccch------HHHhccCceeEeecccc
Q 044387 9 ADWISALPDSVLCHILSYLP-TKNAVATSLLARRW------KLVWTSLQKLYFDDRQS 59 (446)
Q Consensus 9 ~D~is~LPd~vL~~Ils~L~-~~~~~r~s~lsrrW------r~lw~~~~~l~~~~~~~ 59 (446)
.=-+.+||.|++..|+.+|+ -+|++.++.+--.- |.+|+.+-.++|....+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44688999999999999997 58998887763222 35788888788877665
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=33.08 E-value=55 Score=25.51 Aligned_cols=76 Identities=11% Similarity=0.226 Sum_probs=36.2
Q ss_pred CceEEEEEecCCCccccCCcccc-cCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
.++.+.+. . ....++...|. |.+|+.+.+....-.+....+..+++|+.+.+.. .+..- -...+..|+.|+.+.
T Consensus 13 ~l~~i~~~--~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFP--N-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSI-GDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEET--S-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-TTECEEE
T ss_pred CCCEEEEC--C-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc-ccccc-ccccccccccccccc
Confidence 45555442 1 22445555555 7788888877632244445566777788887754 22111 133456688888777
Q ss_pred EE
Q 044387 195 IQ 196 (446)
Q Consensus 195 l~ 196 (446)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 74
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=32.15 E-value=30 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.398 Sum_probs=6.9
Q ss_pred CcccEEEeeeecC
Q 044387 163 PNVKILSVQLESP 175 (446)
Q Consensus 163 ~~L~~L~L~~~~~ 175 (446)
++|++|+|.++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555543
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=32.15 E-value=30 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.398 Sum_probs=6.9
Q ss_pred CcccEEEeeeecC
Q 044387 163 PNVKILSVQLESP 175 (446)
Q Consensus 163 ~~L~~L~L~~~~~ 175 (446)
++|++|+|.++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555543
No 92
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=28.30 E-value=15 Score=34.21 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.6
Q ss_pred cCCCChHHHHHHhccCCccceeeecccccchHHHh
Q 044387 12 ISALPDSVLCHILSYLPTKNAVATSLLARRWKLVW 46 (446)
Q Consensus 12 is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw 46 (446)
+..+|++++..|++++.-+++++++.+|+|-..+=
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~ 42 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELG 42 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhh
Confidence 45799999999999999999999999999998653
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=24.31 E-value=4 Score=40.90 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=13.8
Q ss_pred ceEEEEEchhHHhhhcccccccCccccceeEEEEec
Q 044387 294 TKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVG 329 (446)
Q Consensus 294 l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~ 329 (446)
|..|+++.+.+.++ +..+..++.|+.|.|.-+
T Consensus 213 Li~lDfScNkis~i----Pv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYL----PVDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeec----chhhhhhhhheeeeeccC
Confidence 44455555433322 222334444555555433
No 94
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=21.82 E-value=16 Score=29.69 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=34.3
Q ss_pred cCcccEEEEeceeEeecC-C--CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 139 SVSVEVLKLMSDFVIKVP-A--GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~--~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
...|+..+|++ ..+.. | -...||-.++|+|....+.+-..+ +...|.|+.|.++++..
T Consensus 52 ~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEeccc--chhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 44555556666 33332 1 134566777777777766654333 66677777777777654
No 95
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=20.76 E-value=4.3e+02 Score=20.84 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=24.3
Q ss_pred cceEEEEEEeecCChhHHHHHHHHHhcCccccceEEE
Q 044387 378 QHVKKIEIKGVEGDDDELILVDYLLKYSSVLEVMVIC 414 (446)
Q Consensus 378 ~~L~~v~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i~ 414 (446)
.|+..+.+..-.-...++..++-.+.+.+..+...+.
T Consensus 89 ~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i~ 125 (142)
T PF01827_consen 89 SHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRIY 125 (142)
T ss_pred CCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEEc
Confidence 5777777754333444555555555778889999993
Done!