Query 044387
Match_columns 446
No_of_seqs 167 out of 1741
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 2.4E-22 8.2E-27 205.8 3.1 38 8-45 2-40 (594)
2 3ogk_B Coronatine-insensitive 99.8 1.7E-22 5.7E-27 206.9 1.6 372 8-416 5-446 (592)
3 2ast_B S-phase kinase-associat 99.7 1.7E-19 5.7E-24 171.2 -2.6 279 8-347 5-299 (336)
4 3ogk_B Coronatine-insensitive 99.2 7.9E-12 2.7E-16 127.5 8.2 248 87-353 112-412 (592)
5 4fcg_A Uncharacterized protein 99.1 8E-11 2.7E-15 110.8 8.3 201 111-356 77-289 (328)
6 2p1m_B Transport inhibitor res 99.1 2E-11 6.8E-16 124.6 3.7 235 161-413 287-538 (594)
7 2z80_A TOLL-like receptor 2, v 99.1 1.2E-09 4E-14 103.9 13.2 268 115-404 52-329 (353)
8 4fmz_A Internalin; leucine ric 99.0 8.6E-11 2.9E-15 111.5 1.4 190 137-355 85-276 (347)
9 1z7x_W Ribonuclease inhibitor; 99.0 8.2E-12 2.8E-16 123.3 -6.6 260 88-355 4-295 (461)
10 2ast_B S-phase kinase-associat 99.0 1.3E-11 4.5E-16 116.6 -5.2 234 106-354 37-282 (336)
11 1o6v_A Internalin A; bacterial 98.9 5.5E-10 1.9E-14 110.4 4.5 248 116-417 91-342 (466)
12 4fcg_A Uncharacterized protein 98.9 9E-10 3.1E-14 103.6 5.7 225 139-415 80-310 (328)
13 1o6v_A Internalin A; bacterial 98.9 9E-10 3.1E-14 108.9 4.7 251 115-419 68-322 (466)
14 1z7x_W Ribonuclease inhibitor; 98.8 1.1E-11 3.7E-16 122.4 -10.4 236 116-355 86-352 (461)
15 2ca6_A RAN GTPase-activating p 98.8 1.8E-11 6E-16 118.1 -8.9 39 161-199 92-133 (386)
16 3v47_A TOLL-like receptor 5B a 98.8 1.4E-09 4.8E-14 107.0 3.9 63 135-199 98-165 (455)
17 2ca6_A RAN GTPase-activating p 98.8 2E-10 6.8E-15 110.7 -2.5 93 130-224 22-133 (386)
18 4fmz_A Internalin; leucine ric 98.8 1.5E-09 5.2E-14 102.8 2.3 231 87-355 66-298 (347)
19 1h6u_A Internalin H; cell adhe 98.8 8.1E-10 2.8E-14 102.9 0.1 186 116-355 42-228 (308)
20 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.6E-09 5.3E-14 71.8 1.4 39 8-46 5-43 (53)
21 3rgz_A Protein brassinosteroid 98.8 1.1E-10 3.6E-15 122.9 -6.8 199 135-355 121-329 (768)
22 2z81_A CD282 antigen, TOLL-lik 98.8 1.7E-08 5.8E-13 101.8 9.4 229 115-355 26-262 (549)
23 3o6n_A APL1; leucine-rich repe 98.7 6.6E-09 2.3E-13 100.1 5.7 221 115-355 69-306 (390)
24 3t6q_A CD180 antigen; protein- 98.7 4.2E-10 1.4E-14 115.1 -2.9 67 288-355 445-511 (606)
25 2z63_A TOLL-like receptor 4, v 98.7 3.4E-09 1.2E-13 107.4 3.7 203 132-354 274-480 (570)
26 2z66_A Variable lymphocyte rec 98.7 2.9E-09 9.8E-14 99.0 2.6 248 129-403 19-275 (306)
27 1ozn_A Reticulon 4 receptor; N 98.7 5E-09 1.7E-13 96.4 3.6 200 140-355 32-236 (285)
28 3zyi_A Leucine-rich repeat-con 98.7 1.9E-09 6.5E-14 106.1 0.8 223 116-355 76-301 (452)
29 3oja_B Anopheles plasmodium-re 98.7 8.3E-09 2.8E-13 105.2 5.4 62 288-355 274-335 (597)
30 2id5_A Lingo-1, leucine rich r 98.7 7.7E-09 2.6E-13 102.5 4.8 104 116-223 81-186 (477)
31 3bz5_A Internalin-J, INLJ; leu 98.7 5.6E-09 1.9E-13 102.7 3.6 58 136-199 60-117 (457)
32 2z80_A TOLL-like receptor 2, v 98.7 1.2E-07 4.1E-12 90.0 12.5 91 129-223 43-134 (353)
33 1ogq_A PGIP-2, polygalacturona 98.7 7.7E-09 2.6E-13 96.5 4.1 207 131-355 67-279 (313)
34 2id5_A Lingo-1, leucine rich r 98.7 3.4E-08 1.1E-12 97.8 8.2 221 115-355 56-283 (477)
35 3vq2_A TLR4, TOLL-like recepto 98.7 2.4E-09 8.3E-14 109.4 -0.1 217 115-355 285-508 (606)
36 3o6n_A APL1; leucine-rich repe 98.7 1.1E-08 3.8E-13 98.5 4.2 149 115-271 45-195 (390)
37 3zyj_A Leucine-rich repeat-con 98.6 7.2E-09 2.5E-13 101.6 2.6 244 130-403 56-306 (440)
38 4eco_A Uncharacterized protein 98.6 6.9E-09 2.4E-13 106.6 2.4 222 115-356 206-469 (636)
39 3oja_A Leucine-rich immune mol 98.6 2E-09 6.7E-14 106.9 -1.7 188 139-356 33-226 (487)
40 3zyi_A Leucine-rich repeat-con 98.6 1.2E-08 4.1E-13 100.4 3.8 245 129-403 66-317 (452)
41 3zyj_A Leucine-rich repeat-con 98.6 3.7E-09 1.3E-13 103.7 0.0 223 116-355 65-290 (440)
42 2z63_A TOLL-like receptor 4, v 98.6 1.4E-08 4.7E-13 102.9 4.2 260 115-406 282-549 (570)
43 3t6q_A CD180 antigen; protein- 98.6 2.7E-09 9.1E-14 109.1 -1.8 269 115-408 278-579 (606)
44 1ogq_A PGIP-2, polygalacturona 98.6 1.2E-09 4.1E-14 102.0 -4.1 245 88-355 51-302 (313)
45 1xku_A Decorin; proteoglycan, 98.6 2.1E-08 7.1E-13 94.3 4.2 102 116-223 77-181 (330)
46 3v47_A TOLL-like receptor 5B a 98.6 3.8E-09 1.3E-13 103.9 -1.5 146 241-406 275-426 (455)
47 3o53_A Protein LRIM1, AGAP0063 98.6 3.9E-09 1.3E-13 98.7 -1.8 188 139-356 33-226 (317)
48 4ecn_A Leucine-rich repeat pro 98.6 1.4E-08 4.9E-13 106.9 1.9 227 116-355 549-787 (876)
49 1xku_A Decorin; proteoglycan, 98.5 1.8E-08 6.1E-13 94.7 2.2 125 115-253 100-228 (330)
50 3j0a_A TOLL-like receptor 5; m 98.5 9.1E-08 3.1E-12 101.6 7.6 82 116-200 74-160 (844)
51 2z66_A Variable lymphocyte rec 98.5 1.1E-09 3.8E-14 101.9 -6.4 207 131-355 42-259 (306)
52 3g06_A SSPH2 (leucine-rich rep 98.5 6E-08 2.1E-12 98.6 5.6 71 139-223 80-151 (622)
53 3oja_B Anopheles plasmodium-re 98.5 3.2E-08 1.1E-12 100.9 3.4 212 115-356 75-290 (597)
54 4ecn_A Leucine-rich repeat pro 98.5 2.1E-08 7.3E-13 105.6 1.8 226 115-356 448-709 (876)
55 3goz_A Leucine-rich repeat-con 98.5 2.3E-09 8E-14 102.2 -5.6 72 284-355 187-264 (362)
56 2z81_A CD282 antigen, TOLL-lik 98.5 7.6E-07 2.6E-11 89.6 12.5 190 129-355 17-207 (549)
57 2z7x_B TOLL-like receptor 1, v 98.5 6.9E-07 2.4E-11 89.3 11.9 65 289-356 321-386 (520)
58 2ft3_A Biglycan; proteoglycan, 98.5 1.4E-08 4.7E-13 95.6 -0.6 63 288-355 213-275 (332)
59 1h6u_A Internalin H; cell adhe 98.5 6E-08 2.1E-12 90.1 3.7 100 114-224 62-162 (308)
60 3bz5_A Internalin-J, INLJ; leu 98.5 3.1E-08 1.1E-12 97.4 1.5 203 115-355 85-297 (457)
61 3j0a_A TOLL-like receptor 5; m 98.5 1.3E-07 4.5E-12 100.4 6.4 257 115-402 290-573 (844)
62 3oja_A Leucine-rich immune mol 98.5 6.2E-09 2.1E-13 103.3 -3.6 193 137-352 77-270 (487)
63 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 7.1E-07 2.4E-11 90.2 11.5 64 289-355 350-414 (562)
64 3vq2_A TLR4, TOLL-like recepto 98.5 5.5E-07 1.9E-11 91.9 10.5 203 140-355 32-240 (606)
65 1wwl_A Monocyte differentiatio 98.5 3.9E-09 1.3E-13 98.4 -5.0 83 138-223 93-183 (312)
66 2z7x_B TOLL-like receptor 1, v 98.4 2.2E-07 7.6E-12 92.9 6.9 40 316-355 217-258 (520)
67 2o6q_A Variable lymphocyte rec 98.4 6.8E-08 2.3E-12 87.9 2.5 88 130-223 29-119 (270)
68 4eco_A Uncharacterized protein 98.4 2.1E-08 7.1E-13 103.0 -1.1 227 115-355 305-547 (636)
69 1ozn_A Reticulon 4 receptor; N 98.4 1.1E-07 3.7E-12 87.4 3.6 198 116-330 33-236 (285)
70 1h6t_A Internalin B; cell adhe 98.4 7E-08 2.4E-12 88.9 2.3 57 139-200 45-102 (291)
71 4ezg_A Putative uncharacterize 98.4 2.5E-07 8.6E-12 79.9 5.7 58 138-200 42-100 (197)
72 3rgz_A Protein brassinosteroid 98.4 6.9E-08 2.4E-12 101.4 2.4 68 132-199 285-354 (768)
73 3goz_A Leucine-rich repeat-con 98.4 2.1E-08 7.3E-13 95.5 -1.6 191 163-355 80-295 (362)
74 2z62_A TOLL-like receptor 4, v 98.4 3.9E-08 1.3E-12 89.9 -0.0 202 140-355 28-235 (276)
75 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 3.9E-07 1.3E-11 92.1 7.2 106 240-355 352-461 (562)
76 1wwl_A Monocyte differentiatio 98.4 2.2E-08 7.4E-13 93.4 -2.1 208 131-355 56-285 (312)
77 2ft3_A Biglycan; proteoglycan, 98.3 4.3E-08 1.5E-12 92.2 -0.8 218 115-356 78-306 (332)
78 1m9s_A Internalin B; cell inva 98.3 6.3E-08 2.2E-12 98.3 0.2 164 139-329 42-207 (605)
79 2ra8_A Uncharacterized protein 98.3 3.5E-07 1.2E-11 86.6 5.0 59 161-223 137-203 (362)
80 3o53_A Protein LRIM1, AGAP0063 98.3 1.7E-08 5.7E-13 94.4 -4.4 215 115-355 58-273 (317)
81 3rfs_A Internalin B, repeat mo 98.3 7.8E-08 2.7E-12 87.7 -0.3 171 136-355 59-233 (272)
82 3g06_A SSPH2 (leucine-rich rep 98.2 2.9E-07 9.9E-12 93.6 2.7 223 88-356 62-296 (622)
83 1ziw_A TOLL-like receptor 3; i 98.2 5.6E-08 1.9E-12 100.7 -3.0 225 115-355 329-571 (680)
84 4glp_A Monocyte differentiatio 98.2 4.9E-08 1.7E-12 90.8 -3.2 41 160-200 114-157 (310)
85 1p9a_G Platelet glycoprotein I 98.2 1.6E-07 5.5E-12 86.4 -0.6 38 159-199 51-88 (290)
86 2xwt_C Thyrotropin receptor; s 98.2 4.4E-06 1.5E-10 74.3 8.5 55 292-353 179-235 (239)
87 1ziw_A TOLL-like receptor 3; i 98.2 2.9E-07 1E-11 95.3 0.4 61 115-176 222-285 (680)
88 4ezg_A Putative uncharacterize 98.1 6.5E-07 2.2E-11 77.2 2.3 101 116-223 45-146 (197)
89 1p9a_G Platelet glycoprotein I 98.1 1.4E-06 4.9E-11 80.0 4.3 36 163-199 31-66 (290)
90 2xwt_C Thyrotropin receptor; s 98.1 1.7E-06 5.7E-11 77.1 4.6 177 140-355 31-216 (239)
91 2ell_A Acidic leucine-rich nuc 98.1 9.6E-07 3.3E-11 74.0 2.5 107 115-224 24-131 (168)
92 2ell_A Acidic leucine-rich nuc 98.1 2.6E-06 8.8E-11 71.3 5.0 67 288-356 91-159 (168)
93 3e4g_A ATP synthase subunit S, 98.1 9.1E-07 3.1E-11 73.9 2.1 92 130-223 51-149 (176)
94 1h6t_A Internalin B; cell adhe 98.1 2.1E-06 7.2E-11 78.9 4.5 98 115-223 46-144 (291)
95 4glp_A Monocyte differentiatio 98.0 9.7E-08 3.3E-12 88.8 -5.6 227 88-355 65-305 (310)
96 1xeu_A Internalin C; cellular 98.0 7.4E-07 2.5E-11 80.7 0.3 79 136-223 37-116 (263)
97 1m9s_A Internalin B; cell inva 98.0 5E-07 1.7E-11 91.7 -2.3 145 137-303 62-208 (605)
98 3rfs_A Internalin B, repeat mo 98.0 9.6E-07 3.3E-11 80.4 -0.2 104 114-224 62-168 (272)
99 2ra8_A Uncharacterized protein 97.9 3.3E-05 1.1E-09 73.0 10.1 120 75-197 95-228 (362)
100 2z62_A TOLL-like receptor 4, v 97.9 1.8E-06 6.2E-11 78.6 1.3 198 116-330 29-235 (276)
101 2o6q_A Variable lymphocyte rec 97.9 6.4E-06 2.2E-10 74.8 4.9 174 116-329 38-215 (270)
102 3m19_A Variable lymphocyte rec 97.9 4.4E-06 1.5E-10 74.9 3.2 68 129-201 26-96 (251)
103 2je0_A Acidic leucine-rich nuc 97.9 2.8E-06 9.5E-11 69.5 1.6 35 317-351 111-147 (149)
104 2e31_A FBS1, F-box only protei 97.9 3E-06 1E-10 76.6 1.9 37 9-45 48-85 (297)
105 3cvr_A Invasion plasmid antige 97.9 1.4E-06 4.8E-11 87.5 -0.4 185 114-331 58-242 (571)
106 2je0_A Acidic leucine-rich nuc 97.8 1.2E-06 4E-11 71.8 -1.6 105 116-223 18-123 (149)
107 3l2o_B F-box only protein 4; s 97.8 2.4E-06 8.2E-11 76.3 -0.9 34 11-44 4-37 (312)
108 3cvr_A Invasion plasmid antige 97.8 1.2E-05 4.3E-10 80.6 3.8 31 164-199 121-151 (571)
109 4ay9_X Follicle-stimulating ho 97.7 6.2E-05 2.1E-09 71.0 7.7 215 115-353 30-255 (350)
110 3un9_A NLR family member X1; l 97.7 5.7E-07 2E-11 85.7 -6.6 73 284-356 175-251 (372)
111 1jl5_A Outer protein YOPM; leu 97.7 1E-05 3.6E-10 79.2 1.9 152 164-356 216-369 (454)
112 1ds9_A Outer arm dynein; leuci 97.7 5.3E-06 1.8E-10 71.5 -0.1 65 132-200 40-105 (198)
113 1jl5_A Outer protein YOPM; leu 97.7 5.2E-06 1.8E-10 81.4 -0.5 151 141-330 216-368 (454)
114 1xeu_A Internalin C; cellular 97.6 1.6E-05 5.6E-10 71.8 2.0 117 139-270 18-136 (263)
115 4g8a_A TOLL-like receptor 4; l 97.6 8.4E-05 2.9E-09 75.8 7.6 104 116-223 53-158 (635)
116 3e6j_A Variable lymphocyte rec 97.5 7.1E-05 2.4E-09 66.0 5.0 89 129-223 31-122 (229)
117 2v9t_B SLIT homolog 2 protein 97.5 0.00011 3.7E-09 64.3 6.1 90 130-223 24-114 (220)
118 3m19_A Variable lymphocyte rec 97.5 7E-05 2.4E-09 67.0 4.7 102 116-223 36-141 (251)
119 1ds9_A Outer arm dynein; leuci 97.5 1.4E-05 4.8E-10 68.8 -0.1 39 159-200 44-82 (198)
120 3e4g_A ATP synthase subunit S, 97.5 3.1E-05 1.1E-09 64.6 2.0 86 161-251 59-149 (176)
121 3v7d_B Cell division control p 97.5 1.5E-05 5.1E-10 78.0 -0.4 40 7-46 10-49 (464)
122 2o6s_A Variable lymphocyte rec 97.3 7.9E-05 2.7E-09 64.5 2.8 88 130-223 20-110 (208)
123 4ay9_X Follicle-stimulating ho 97.3 0.00026 8.9E-09 66.7 6.6 93 129-224 21-115 (350)
124 2xot_A Amphoterin-induced prot 97.3 5.2E-05 1.8E-09 71.9 1.2 68 130-200 31-100 (361)
125 2v9t_B SLIT homolog 2 protein 97.3 0.00028 9.7E-09 61.6 5.8 104 116-223 33-138 (220)
126 2v70_A SLIT-2, SLIT homolog 2 97.3 0.00028 9.7E-09 61.6 5.8 61 139-200 56-117 (220)
127 3e6j_A Variable lymphocyte rec 97.3 0.00023 8E-09 62.6 5.1 102 115-223 40-145 (229)
128 4g8a_A TOLL-like receptor 4; l 97.2 0.00023 7.9E-09 72.5 5.2 105 115-224 76-184 (635)
129 2ovr_B FBW7, F-BOX/WD repeat p 97.2 9.3E-05 3.2E-09 72.0 1.6 37 8-44 15-51 (445)
130 1a9n_A U2A', U2A'; complex (nu 97.2 6E-05 2.1E-09 63.4 -0.0 57 141-200 43-100 (176)
131 1p22_A F-BOX/WD-repeat protein 97.1 4.8E-05 1.7E-09 73.8 -1.0 37 8-44 7-47 (435)
132 2o6s_A Variable lymphocyte rec 97.1 8.6E-05 2.9E-09 64.2 0.6 39 160-199 73-111 (208)
133 1a9n_A U2A', U2A'; complex (nu 97.1 4E-05 1.4E-09 64.5 -1.5 67 288-356 84-152 (176)
134 2v70_A SLIT-2, SLIT homolog 2 97.1 0.00045 1.5E-08 60.3 4.9 91 129-223 23-115 (220)
135 1io0_A Tropomodulin; LRR prote 97.1 0.00017 6E-09 61.1 2.0 38 318-355 120-162 (185)
136 2xot_A Amphoterin-induced prot 96.9 0.00075 2.6E-08 63.8 5.2 133 116-253 40-175 (361)
137 1w8a_A SLIT protein; signaling 96.9 0.00064 2.2E-08 57.9 4.1 89 129-223 20-112 (192)
138 1dce_A Protein (RAB geranylger 96.8 0.00046 1.6E-08 69.4 3.0 99 116-223 442-543 (567)
139 2o6r_A Variable lymphocyte rec 96.8 0.00064 2.2E-08 57.0 3.0 88 130-223 20-110 (177)
140 2wfh_A SLIT homolog 2 protein 96.7 0.0013 4.3E-08 56.1 4.2 66 131-199 45-113 (193)
141 2wfh_A SLIT homolog 2 protein 96.7 0.0013 4.4E-08 56.1 4.2 89 129-223 22-112 (193)
142 2o6r_A Variable lymphocyte rec 96.6 0.0017 5.7E-08 54.4 4.7 81 116-201 29-113 (177)
143 3g39_A Variable lymphocyte rec 96.6 0.0015 5E-08 54.4 4.2 68 129-201 21-91 (170)
144 2r9u_A Variable lymphocyte rec 96.5 0.0023 8E-08 53.4 4.8 68 129-201 24-94 (174)
145 1w8a_A SLIT protein; signaling 96.4 0.0013 4.5E-08 55.9 2.7 81 116-201 30-115 (192)
146 1dce_A Protein (RAB geranylger 96.4 0.0015 5E-08 65.7 3.3 83 115-201 463-546 (567)
147 3sb4_A Hypothetical leucine ri 96.3 0.00087 3E-08 62.4 1.1 83 261-355 225-308 (329)
148 3un9_A NLR family member X1; l 96.3 0.0006 2E-08 64.7 -0.3 67 290-356 153-223 (372)
149 2ifg_A High affinity nerve gro 96.3 0.003 1E-07 59.1 4.4 92 129-224 21-114 (347)
150 4b8c_D Glucose-repressible alc 96.1 0.0011 3.9E-08 68.7 0.7 102 116-225 225-328 (727)
151 1io0_A Tropomodulin; LRR prote 95.7 0.0043 1.5E-07 52.4 2.4 59 139-199 64-134 (185)
152 4b8c_D Glucose-repressible alc 95.6 0.0014 4.8E-08 68.0 -1.2 109 133-252 217-327 (727)
153 2r9u_A Variable lymphocyte rec 95.1 0.022 7.7E-07 47.3 4.8 81 115-200 33-117 (174)
154 3g39_A Variable lymphocyte rec 95.0 0.023 7.8E-07 47.0 4.7 81 115-200 30-114 (170)
155 4fdw_A Leucine rich hypothetic 94.3 0.0093 3.2E-07 57.1 0.7 103 242-355 249-356 (401)
156 3sb4_A Hypothetical leucine ri 94.0 0.042 1.4E-06 50.8 4.4 34 139-172 225-259 (329)
157 4fdw_A Leucine rich hypothetic 91.7 0.039 1.3E-06 52.7 0.7 213 116-355 158-381 (401)
158 2ifg_A High affinity nerve gro 88.7 0.31 1E-05 45.2 4.0 82 116-200 32-115 (347)
159 1pgv_A TMD-1, tropomodulin TMD 88.3 0.13 4.3E-06 43.5 0.9 21 334-354 147-167 (197)
160 3rw6_A Nuclear RNA export fact 87.4 0.21 7.2E-06 44.5 1.9 77 116-194 171-257 (267)
161 3rw6_A Nuclear RNA export fact 87.4 0.14 4.7E-06 45.7 0.6 41 161-201 168-209 (267)
162 1pgv_A TMD-1, tropomodulin TMD 77.4 0.58 2E-05 39.4 0.6 58 139-198 69-136 (197)
163 4gt6_A Cell surface protein; l 68.8 4.9 0.00017 37.7 4.8 80 138-223 286-367 (394)
164 4gt6_A Cell surface protein; l 57.3 8 0.00027 36.2 3.9 105 138-251 263-367 (394)
165 4fs7_A Uncharacterized protein 56.3 6.2 0.00021 37.0 3.0 88 132-223 288-376 (394)
166 3rfe_A Platelet glycoprotein I 39.1 14 0.00046 28.5 1.9 38 140-177 31-69 (130)
167 4fs7_A Uncharacterized protein 38.3 24 0.00081 32.9 3.9 66 131-198 310-376 (394)
168 2agh_C Zinc finger protein HRX 37.6 15 0.00051 19.4 1.3 19 393-411 7-25 (31)
169 4h09_A Hypothetical leucine ri 35.3 26 0.00088 32.3 3.6 58 138-197 215-272 (379)
170 4h09_A Hypothetical leucine ri 35.1 35 0.0012 31.4 4.5 82 137-221 237-318 (379)
171 2lz0_A Uncharacterized protein 26.7 37 0.0013 24.6 2.4 18 132-149 11-29 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=2.4e-22 Score=205.75 Aligned_cols=38 Identities=24% Similarity=0.546 Sum_probs=29.3
Q ss_pred cCcccCCCChHHHHHHhccCC-ccceeeecccccchHHH
Q 044387 8 KADWISALPDSVLCHILSYLP-TKNAVATSLLARRWKLV 45 (446)
Q Consensus 8 ~~D~is~LPd~vL~~Ils~L~-~~~~~r~s~lsrrWr~l 45 (446)
+.|+++.||||||.+||+||| ++|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 459999999999999999999 89999999999999987
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.7e-22 Score=206.88 Aligned_cols=372 Identities=13% Similarity=0.071 Sum_probs=178.6
Q ss_pred cCcccC----CCChHHHHHHhccC-CccceeeecccccchHHHhccCceeEeeccccccCCCCCCCCCCcHHHHHHHhhc
Q 044387 8 KADWIS----ALPDSVLCHILSYL-PTKNAVATSLLARRWKLVWTSLQKLYFDDRQSRRLPGMMGDPMPGFEEFVETVLT 82 (446)
Q Consensus 8 ~~D~is----~LPd~vL~~Ils~L-~~~~~~r~s~lsrrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 82 (446)
+.|+++ +||||++.+||+|| +++|++++++|||||++++...+........+ ......++.
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--------------~~~~~~~~~ 70 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY--------------TATPDRLSR 70 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGG--------------GSCHHHHHH
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecc--------------ccChHHHHH
Confidence 455665 89999999999999 89999999999999999864332111111111 011223333
Q ss_pred cCCCCcceEEEEEecCC---------CCccchhHHHHHHHh--CCceEEEEEecCCCccccCCcccc-cCc-ccEEEEec
Q 044387 83 GTYPTNITTFFVHCSRP---------VDLSSFHLWVCSAVR--RNAREIELYLDQNHRVELPEELYT-SVS-VEVLKLMS 149 (446)
Q Consensus 83 ~~~~~~l~~l~l~~~~~---------~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~lp~~l~~-~~~-L~~L~L~~ 149 (446)
..+ .++++.+..... ........|+...+. .++++|++..+...... +..+.. +++ |++|+|.+
T Consensus 71 ~~~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 71 RFP--NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HCT--TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEES
T ss_pred hCC--CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcC
Confidence 222 377777765311 123344566665542 46777776643221111 111222 333 66666665
Q ss_pred eeEe-ecCCC----CccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEeecCCCCC--Ce-EEEeecCCcceE
Q 044387 150 DFVI-KVPAG----GTSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYLNDEGP--TT-KFVISSSTLKRC 218 (446)
Q Consensus 150 ~~~~-l~~~~----~~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~~~~~~--~~-~~~i~~~~L~~L 218 (446)
|. +...+ ...+++|++|+|+++.+.+.. +..+..+||.|+.|.+.++...+.. .+ .....+++|+.|
T Consensus 148 --~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 148 --CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp --CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred --CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 32 22111 124566666666666554332 4445555666666665554332110 00 000134555555
Q ss_pred EEeeecccccc---------------------c-ccceeEEEecCCceEEEeeecccC--cEEEecCCCceEEEEEEEeC
Q 044387 219 TLWVATEGEMF---------------------T-QAEYKVRITAPSLERLHIMSDIFG--KFVVHDLNSLTDVILDIVYG 274 (446)
Q Consensus 219 ~l~~~~~~~~~---------------------~-~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L~~~~l~~~~~ 274 (446)
.+..|...+-. . ..........++|+.+.+++.... ...+..+++|+++++..+.
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~- 304 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL- 304 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-
Confidence 55554221100 0 000001112244555544432111 1123345666666665432
Q ss_pred ccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEe----------cc-cchhHHHHHHhcC
Q 044387 275 EWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAV----------GA-IGWAVLPVILSSS 343 (446)
Q Consensus 275 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~----------~~-~~~~~l~~lL~~~ 343 (446)
.....+..++..+++++.|.+....... ........+++|++|++.. +. ....++..+.+.|
T Consensus 305 ----l~~~~~~~~~~~~~~L~~L~L~~~~~~~---~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 305 ----LETEDHCTLIQKCPNLEVLETRNVIGDR---GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp ----CCHHHHHHHHTTCTTCCEEEEEGGGHHH---HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHhCcCCCEEeccCccCHH---HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 1111144556677777777776321110 0011112345677777773 32 3556666777777
Q ss_pred CCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEeec------CChhHHHHHHHHHhcCccccceEEEee
Q 044387 344 QNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKGVE------GDDDELILVDYLLKYSSVLEVMVICFK 416 (446)
Q Consensus 344 p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~~~------g~~~~~~l~~~ll~~a~~Le~m~i~~~ 416 (446)
|+|+.|.+....-. . ... ..... ...+|+.+.+.+.. +...+ +-+..++.+.+.|+++.+...
T Consensus 378 ~~L~~L~l~~~~l~--~---~~~---~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 378 QELEYMAVYVSDIT--N---ESL---ESIGT-YLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp TTCSEEEEEESCCC--H---HHH---HHHHH-HCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHHCTTCCEEEEECC
T ss_pred ccCeEEEeecCCcc--H---HHH---HHHHh-hCCCCcEEEEeecCCCccccCchHH-HHHHHHHHhCCCCCEEEEecC
Confidence 77777777433210 0 000 00011 13578888886432 11111 234555677899999998753
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.7e-19 Score=171.16 Aligned_cols=279 Identities=14% Similarity=0.076 Sum_probs=138.1
Q ss_pred cCcccCCCChHHHHHHhccCCccceeeecccccchHHHhcc---CceeEeeccccccCCCCCCCCCCcHHHHHHHhhccC
Q 044387 8 KADWISALPDSVLCHILSYLPTKNAVATSLLARRWKLVWTS---LQKLYFDDRQSRRLPGMMGDPMPGFEEFVETVLTGT 84 (446)
Q Consensus 8 ~~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 84 (446)
....|++||||++.+||++|+.+|+++++.|||+|+.+... ...+++....+ .
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~---------~--------------- 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL---------H--------------- 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------C---------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------C---------------
Confidence 34568999999999999999999999999999999998532 22233322211 0
Q ss_pred CCCcceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC---C-CCc
Q 044387 85 YPTNITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP---A-GGT 160 (446)
Q Consensus 85 ~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~---~-~~~ 160 (446)
...+......+++.+.+... .....+..++.+++|++|+|++ +.+.. + ...
T Consensus 61 ---------------------~~~~~~~~~~~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~--~~l~~~~~~~~~~ 115 (336)
T 2ast_B 61 ---------------------PDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSN--SVIEVSTLHGILS 115 (336)
T ss_dssp ---------------------HHHHHHHHHTTCSEEECTTC--EECSCCCSCCCCBCCCEEECTT--CEECHHHHHHHHT
T ss_pred ---------------------HHHHHhhhhccceEEEcCCc--cccccchhhccCCCCCEEEccC--CCcCHHHHHHHHh
Confidence 11122222334444443221 1112223344566677777766 43332 1 234
Q ss_pred cCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeE-EEeecCCcceEEEeee-cccccccccceeEEE
Q 044387 161 SFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTK-FVISSSTLKRCTLWVA-TEGEMFTQAEYKVRI 238 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~-~~i~~~~L~~L~l~~~-~~~~~~~~~~~~~~i 238 (446)
.+++|++|+|+++.+.+.... .++.||+|++|++.+|.......+. .+-..++|+.|.+.+| ..... .......
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~ 191 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAVA 191 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---HHHHHHH
Confidence 566677777766665544322 3445677777777666321000000 0023455666666655 22110 0111122
Q ss_pred ecC-CceEEEeeecc--cC----cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccc
Q 044387 239 TAP-SLERLHIMSDI--FG----KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAY 311 (446)
Q Consensus 239 ~ap-~L~~L~l~~~~--~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~ 311 (446)
..| +|++|+++++. .. ...+..+|+|+.+++..+... ... ....+..+++++.|.++.+. . +....
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----~~~-~~~~l~~l~~L~~L~l~~~~-~-~~~~~ 264 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----KND-CFQEFFQLNYLQHLSLSRCY-D-IIPET 264 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----CGG-GGGGGGGCTTCCEEECTTCT-T-CCGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC----CHH-HHHHHhCCCCCCEeeCCCCC-C-CCHHH
Confidence 345 66666666542 11 112234555555555433210 000 11124555666666666543 1 11111
Q ss_pred ccccCccccceeEEEEecccchhHHHHHHhcCCCCc
Q 044387 312 HIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQ 347 (446)
Q Consensus 312 ~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~ 347 (446)
...+..+++|++|++..+ .....+..+.+.+|.|+
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred HHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceE
Confidence 223344566677766654 43444555555566555
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=7.9e-12 Score=127.52 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=141.1
Q ss_pred CcceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCC-CccccCCcccccCcccEEEEeceeEeecCCC-------
Q 044387 87 TNITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQN-HRVELPEELYTSVSVEVLKLMSDFVIKVPAG------- 158 (446)
Q Consensus 87 ~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~------- 158 (446)
+.++.+.+... .-.+....|+......++++|.+..+.. ....++.....|++|++|+|++ +.+...+
T Consensus 112 ~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~--~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 112 RQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE--SSFSEKDGKWLHEL 187 (592)
T ss_dssp TTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT--CEEECCCSHHHHHH
T ss_pred CCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc--ccccCcchhHHHHH
Confidence 46999999854 1223344566665556799999976431 1223444444689999999999 6654432
Q ss_pred CccCCcccEEEeeeecCC---chhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEe--------------
Q 044387 159 GTSFPNVKILSVQLESPE---NSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLW-------------- 221 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~---~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~-------------- 221 (446)
...+++|++|+|+++.+. .+.+..++.+||+|+.|.+.+|...+....- ...++|+.|.+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF--KAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH--HHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH--hhhhHHHhhcccccccccchHHHHHH
Confidence 246899999999988876 3448888899999999999988643211100 123344444443
Q ss_pred -------------eecccccccccceeEEEecCCceEEEeeecccCc----EEEecCCCceEEEEEEEeCccccCChhhH
Q 044387 222 -------------VATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNRA 284 (446)
Q Consensus 222 -------------~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~ 284 (446)
.+.. .....+.-.+|+|++|.++++.... ..+..+|+|+.+.+. .. .....+
T Consensus 266 l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~----~~~~~l 334 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NV----IGDRGL 334 (592)
T ss_dssp CCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GG----GHHHHH
T ss_pred hhccccccccCccccch-----hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc--Cc----cCHHHH
Confidence 2200 0111122235678888887654321 123567777777776 11 111114
Q ss_pred HHHHHhccCceEEEEEc-----------hhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEe
Q 044387 285 IQLLQRLNNTKNLTVSY-----------GVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 285 ~~~l~~l~~l~~L~l~~-----------~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
..+...+++|+.|.++. ..+.. .........+++|++|.+.....+...+..+.++||+|++|.+..
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 55666777777777772 11100 000000112456666666444345555555555666666666654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.13 E-value=8e-11 Score=110.77 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=120.9
Q ss_pred HHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec-CC-CCccCCcccEEEeeeecCCchhhhhhhhcCC
Q 044387 111 SAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV-PA-GGTSFPNVKILSVQLESPENSLTEKLFCSCP 188 (446)
Q Consensus 111 ~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp 188 (446)
.+...+++.|++.... ...+|..++.+++|++|+|++ +.+. .| ....+++|++|+|+++.+. .+..-+.+++
T Consensus 77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~--n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDA--AGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN 150 (328)
T ss_dssp HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEES--SCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCC--CCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence 3344688888887644 347898899999999999999 5443 23 4678999999999999887 3555588899
Q ss_pred ccceeEEEeecCCCCCCeEE--------EeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE--EE
Q 044387 189 ALEELSIQAYLNDEGPTTKF--------VISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VV 258 (446)
Q Consensus 189 ~Le~L~l~~~~~~~~~~~~~--------~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~ 258 (446)
.|+.|++.+|...+.....+ +-..++|+.|.+..+ ....+ .+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n----------------------------~l~~lp~~l 202 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT----------------------------GIRSLPASI 202 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE----------------------------CCCCCCGGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC----------------------------CcCcchHhh
Confidence 99999999986532211110 012445555555554 22111 13
Q ss_pred ecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHH
Q 044387 259 HDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPV 338 (446)
Q Consensus 259 ~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ 338 (446)
..+++|+.+++...... .. ...+..+++++.|.++.+.+. ...+..+..+++|++|+++.+... ..++.
T Consensus 203 ~~l~~L~~L~L~~N~l~--~l-----~~~l~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~ 271 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLS--AL-----GPAIHHLPKLEELDLRGCTAL---RNYPPIFGGRAPLKRLILKDCSNL-LTLPL 271 (328)
T ss_dssp GGCTTCCEEEEESSCCC--CC-----CGGGGGCTTCCEEECTTCTTC---CBCCCCTTCCCCCCEEECTTCTTC-CBCCT
T ss_pred cCCCCCCEEEccCCCCC--cC-----chhhccCCCCCEEECcCCcch---hhhHHHhcCCCCCCEEECCCCCch-hhcch
Confidence 44555555555433221 11 112566677777777654321 111333445667777777654321 11122
Q ss_pred HHhcCCCCcEEEEEeccc
Q 044387 339 ILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 339 lL~~~p~L~~L~i~~~~~ 356 (446)
-+..+++|+.|+|..+..
T Consensus 272 ~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TGGGCTTCCEEECTTCTT
T ss_pred hhhcCCCCCEEeCCCCCc
Confidence 256777888887777653
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=2e-11 Score=124.58 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=149.3
Q ss_pred cCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCC-CCCCeEEEeecCCcceEEEeeecc------cccccccc
Q 044387 161 SFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLND-EGPTTKFVISSSTLKRCTLWVATE------GEMFTQAE 233 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~-~~~~~~~~i~~~~L~~L~l~~~~~------~~~~~~~~ 233 (446)
.+++|++|+|+++.+.+..+..++.+||+|++|.+.+|..+ +...+. -.+++|+.|.+..|.. ..-.+.+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~--~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA--STCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH--HHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH--HhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 57899999999999887778888999999999999998321 011111 2468999999965411 00000111
Q ss_pred eeEEEecCCceEEEeeecccCcE---EE-ecCCCceEEEEEEEe----Ccccc-CChhhHHHHHHhccCceEEEEEchhH
Q 044387 234 YKVRITAPSLERLHIMSDIFGKF---VV-HDLNSLTDVILDIVY----GEWSR-VDPNRAIQLLQRLNNTKNLTVSYGVL 304 (446)
Q Consensus 234 ~~~~i~ap~L~~L~l~~~~~~~~---~~-~~~p~L~~~~l~~~~----~~~~~-~~~~~~~~~l~~l~~l~~L~l~~~~~ 304 (446)
..+...+|+|++|.+.+...... .+ ..+|+|+.+++.+.. ..... .....+..++..+++++.|.++.. +
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-L 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-C
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-c
Confidence 12223469999997766543311 12 358999999998432 11110 002236777899999999999651 1
Q ss_pred HhhhcccccccC-ccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEE
Q 044387 305 CALDHAYHIWFP-ALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKI 383 (446)
Q Consensus 305 ~~~~~~~~~~~p-~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v 383 (446)
. ......+. .+++|++|+++.+.....++..+...||+|++|+|..+... +.....+ .. ...+|+++
T Consensus 444 ~---~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~--~~~~~~~------~~-~l~~L~~L 511 (594)
T 2p1m_B 444 T---DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG--DKALLAN------AS-KLETMRSL 511 (594)
T ss_dssp C---HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC--HHHHHHT------GG-GGGGSSEE
T ss_pred c---HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc--HHHHHHH------HH-hCCCCCEE
Confidence 1 11111122 35789999999888778888888899999999999988741 1000001 11 13689999
Q ss_pred EEEeecCChhHHHHHHHHHhcCccccceEE
Q 044387 384 EIKGVEGDDDELILVDYLLKYSSVLEVMVI 413 (446)
Q Consensus 384 ~i~~~~g~~~~~~l~~~ll~~a~~Le~m~i 413 (446)
.+.+..... +-++.+....|.|+...+
T Consensus 512 ~l~~~~~~~---~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 512 WMSSCSVSF---GACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp EEESSCCBH---HHHHHHHHHCTTEEEEEE
T ss_pred eeeCCCCCH---HHHHHHHHhCCCCEEEEe
Confidence 998876533 344555566677754443
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.2e-09 Score=103.91 Aligned_cols=268 Identities=12% Similarity=0.052 Sum_probs=166.6
Q ss_pred CCceEEEEEecCCCccccCC-cccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
..+++|++..+. ...+|. .+..+++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+- -...+.++++|+.
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 367777775432 234555 455689999999998322 23334577899999999999988753 2344778999999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l 269 (446)
|++.++..........+-..++|+.|.+.++........ ......++|++|.++++..... .+..+++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 999998754333211113568899999998732111000 0011357899999988765433 3456788888887
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc---hhHHHHHHhcCCCC
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG---WAVLPVILSSSQNL 346 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~lL~~~p~L 346 (446)
....... . -..++..+++++.|.++.+.+................++.+++...... ...++..+..+++|
T Consensus 206 ~~n~l~~----~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 206 HMKQHIL----L--LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp ECSCSTT----H--HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred CCCcccc----c--hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 6543211 1 2345667899999999987655421111112223456788888765443 34566678899999
Q ss_pred cEEEEEecccccccccccCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHhc
Q 044387 347 QSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLKY 404 (446)
Q Consensus 347 ~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~~ 404 (446)
+.|++..+.-. ... .... ....+|+++.+.+ +.+....+......+.+
T Consensus 280 ~~L~Ls~N~l~--~i~-------~~~~-~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 280 LELEFSRNQLK--SVP-------DGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp CEEECCSSCCC--CCC-------TTTT-TTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCC--ccC-------HHHH-hcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 99999887631 110 0001 1246899998876 77776656555544444
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.98 E-value=8.6e-11 Score=111.47 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=84.6
Q ss_pred cccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 137 YTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 137 ~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+-. . +..++.|+.|.+.+|........- ...++|
T Consensus 85 ~~l~~L~~L~L~~--n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~--~~l~~L 157 (347)
T 4fmz_A 85 SNLVKLTNLYIGT--NKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPL--SNMTGL 157 (347)
T ss_dssp TTCTTCCEEECCS--SCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGG--TTCTTC
T ss_pred hcCCcCCEEEccC--CcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccch--hhCCCC
Confidence 3455566666555 33322 23445555666666555554321 1 445555666655555321110001 233455
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCc
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNT 294 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l 294 (446)
+.|.+.+|...... . ....++|++|.++++..... .+..+++|+.+.+....... . .. +..++++
T Consensus 158 ~~L~l~~~~~~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~-----~~-~~~~~~L 223 (347)
T 4fmz_A 158 NYLTVTESKVKDVT-----P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--I-----TP-VANMTRL 223 (347)
T ss_dssp CEEECCSSCCCCCG-----G-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--C-----GG-GGGCTTC
T ss_pred cEEEecCCCcCCch-----h-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC--C-----ch-hhcCCcC
Confidence 55555555221110 0 11335566665555433211 13455555555544321110 0 01 4555566
Q ss_pred eEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 295 KNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+.|.++.+.+..+ ..+..+++|++|+++.+..... ..+..+|+|+.|++..+.
T Consensus 224 ~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 224 NSLKIGNNKITDL-----SPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp CEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC
T ss_pred CEEEccCCccCCC-----cchhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCc
Confidence 6666655433221 1133445566666654433111 124556666666665543
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.96 E-value=8.2e-12 Score=123.34 Aligned_cols=260 Identities=14% Similarity=0.104 Sum_probs=151.7
Q ss_pred cceEEEEEecCCCCccchhHHHH-HHHhCCceEEEEEecCCCc---cccCCcccccCcccEEEEeceeEeecCCC----C
Q 044387 88 NITTFFVHCSRPVDLSSFHLWVC-SAVRRNAREIELYLDQNHR---VELPEELYTSVSVEVLKLMSDFVIKVPAG----G 159 (446)
Q Consensus 88 ~l~~l~l~~~~~~~~~~~~~wl~-~~~~~~v~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~l~~~~----~ 159 (446)
.++.+.+.... ... ..|.. ....++++.|.+..+.-.. ..++..+..+++|++|+|++ +.+...+ .
T Consensus 4 ~l~~L~Ls~~~-l~~---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~--n~l~~~~~~~l~ 77 (461)
T 1z7x_W 4 DIQSLDIQCEE-LSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS--NELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEESCC-CCH---HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT--CCCHHHHHHHHH
T ss_pred cceehhhhhcc-cCc---hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC--CcCChHHHHHHH
Confidence 45666665431 111 22333 2344688999887654321 24555566688999999998 5554311 1
Q ss_pred ccCC----cccEEEeeeecCCchh---hhhhhhcCCccceeEEEeecCCCC--CCeE-E-EeecCCcceEEEeeeccccc
Q 044387 160 TSFP----NVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYLNDEG--PTTK-F-VISSSTLKRCTLWVATEGEM 228 (446)
Q Consensus 160 ~~~~----~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~~~~~--~~~~-~-~i~~~~L~~L~l~~~~~~~~ 228 (446)
..++ +|++|+|+++.+.+.+ +...+..||.|++|++++|...+. ..+. . ....++|+.|.+.+|.....
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 2344 6999999999888753 677788899999999998864211 0000 0 01134699999988743221
Q ss_pred ccccceeEEEecCCceEEEeeecccCcE---EE-----ecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEE
Q 044387 229 FTQAEYKVRITAPSLERLHIMSDIFGKF---VV-----HDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVS 300 (446)
Q Consensus 229 ~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~-----~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 300 (446)
............|+|++|.++++..... .+ ...++|+.+++..+..... ....+...+..+++++.|.++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT--HHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH--HHHHHHHHHHhCCCccEEecc
Confidence 0000011112347899999887653211 11 1356888887765432211 111145667788899999998
Q ss_pred chhHHhhhccc--ccccCccccceeEEEEecccchh---HHHHHHhcCCCCcEEEEEecc
Q 044387 301 YGVLCALDHAY--HIWFPALSHLQHLEVAVGAIGWA---VLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 301 ~~~~~~~~~~~--~~~~p~~~~L~~L~l~~~~~~~~---~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+.+....... ......+++|++|+++.+..... .+...+..+|+|++|++..+.
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 76543311100 11122356888888877655433 366677788999998888765
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.95 E-value=1.3e-11 Score=116.57 Aligned_cols=234 Identities=18% Similarity=0.123 Sum_probs=123.5
Q ss_pred hHHHHHHHh-CCceEEEEEecCCCccccCCccccc--CcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCchhh
Q 044387 106 HLWVCSAVR-RNAREIELYLDQNHRVELPEELYTS--VSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPENSLT 180 (446)
Q Consensus 106 ~~wl~~~~~-~~v~~L~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l 180 (446)
.+|-..+.. ...+++++...... |..+... ++++.|++.+ ..+. .+....+++|++|+|+++.+.+..+
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~--n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPR--SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTT--CEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCC--ccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 456555432 24666666432111 2223334 8899999999 4443 3456689999999999999887778
Q ss_pred hhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeec-ccCc----
Q 044387 181 EKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSD-IFGK---- 255 (446)
Q Consensus 181 ~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~-~~~~---- 255 (446)
...+.+||+|++|++.+|...+. ....+...++|+.|.+.+|..... .....+....|+|++|+++++ ....
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 88899999999999999864311 111002357788888887721110 001112223567777777665 3321
Q ss_pred EEEecCC-CceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc-ch
Q 044387 256 FVVHDLN-SLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI-GW 333 (446)
Q Consensus 256 ~~~~~~p-~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~-~~ 333 (446)
..+..+| +|+++++..+... +....+...+..+++++.|.++.+.. +.......+..+++|++|+++.+.. ..
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~---~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKN---LQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGG---SCHHHHHHHHHHCTTCSEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHHHhcccCCCEEEeCCCccc---CCHHHHHHHHhhCCCCCEEeCCCCCc--CCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 1133455 5555555433100 11111344455555555555554431 0011122233344555555544421 22
Q ss_pred hHHHHHHhcCCCCcEEEEEec
Q 044387 334 AVLPVILSSSQNLQSLILRKQ 354 (446)
Q Consensus 334 ~~l~~lL~~~p~L~~L~i~~~ 354 (446)
.++ ..+..+|+|+.|++.++
T Consensus 263 ~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGG-GGGGGCTTCCEEECTTS
T ss_pred HHH-HHHhcCCCCCEEeccCc
Confidence 222 22344555555555443
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=5.5e-10 Score=110.43 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=124.9
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
.+++|.+..+. ...++. +..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+-. -+..+++|+.|.
T Consensus 91 ~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~--n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~ 162 (466)
T 1o6v_A 91 KLVDILMNNNQ--IADITP-LANLTNLTGLTLFN--NQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLS 162 (466)
T ss_dssp TCCEEECCSSC--CCCCGG-GTTCTTCCEEECCS--SCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEE
T ss_pred cCCEEECCCCc--cccChh-hcCCCCCCEEECCC--CCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEee
Confidence 55555554322 122332 34456666666665 43322 22455666666666666554421 245566666666
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEEe
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVY 273 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~ 273 (446)
+.++... ... - ...++|+.|.+..+....- ......++|++|.++++..... .+..+++|+.+++....
T Consensus 163 l~~~~~~-~~~-~--~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 163 FGNQVTD-LKP-L--ANLTTLERLDISSNKVSDI------SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232 (466)
T ss_dssp EEESCCC-CGG-G--TTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCcccC-chh-h--ccCCCCCEEECcCCcCCCC------hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC
Confidence 6532211 111 0 2345666666666532110 0012346677777666543211 24456677766665432
Q ss_pred CccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEe
Q 044387 274 GEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
... . ..+..+++++.|.++.+.+... ..+..+++|++|+++.+..... .. +..+++|+.|++..
T Consensus 233 l~~--~------~~l~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 233 LKD--I------GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNI--SP-LAGLTALTNLELNE 296 (466)
T ss_dssp CCC--C------GGGGGCTTCSEEECCSSCCCCC-----GGGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCS
T ss_pred ccc--c------hhhhcCCCCCEEECCCCccccc-----hhhhcCCCCCEEECCCCccCcc--cc-ccCCCccCeEEcCC
Confidence 111 1 1245666777777766543321 1244556777777765543211 11 56677777777766
Q ss_pred cccccccccccCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHhcCccccceEEEeec
Q 044387 354 QSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLKYSSVLEVMVICFKG 417 (446)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~ 417 (446)
+.-. +. . +-....+|+.+.+.+ +.+... +.+.+.|+++.+....
T Consensus 297 n~l~-------~~---~--~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 297 NQLE-------DI---S--PISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp SCCS-------CC---G--GGGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCSSC
T ss_pred Cccc-------Cc---h--hhcCCCCCCEEECcCCcCCCchh--------hccCccCCEeECCCCc
Confidence 5421 01 0 111236788887765 333321 4678899999887653
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.91 E-value=9e-10 Score=103.57 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=143.8
Q ss_pred cCcccEEEEeceeEeecC--CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcc
Q 044387 139 SVSVEVLKLMSDFVIKVP--AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 216 (446)
...++.|+|++ +.+.. +....+++|++|+|+++.+. .+...+..++.|+.|++.+|....+...- ...++|+
T Consensus 80 ~~~l~~L~L~~--n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l--~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRS--VPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASI--ASLNRLR 153 (328)
T ss_dssp STTCCEEEEES--SCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGG--GGCTTCC
T ss_pred ccceeEEEccC--CCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHH--hcCcCCC
Confidence 37899999999 54432 34667999999999999887 34455678999999999999764222111 3457888
Q ss_pred eEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceE
Q 044387 217 RCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKN 296 (446)
Q Consensus 217 ~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~ 296 (446)
.|.+.+|...+... ..+....+.+ .+..+++|+.+++....... +...+..+++++.
T Consensus 154 ~L~L~~n~~~~~~p----------~~~~~~~~~~------~~~~l~~L~~L~L~~n~l~~-------lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTELP----------EPLASTDASG------EHQGLVNLQSLRLEWTGIRS-------LPASIANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCCCC----------SCSEEEC-CC------CEEESTTCCEEEEEEECCCC-------CCGGGGGCTTCCE
T ss_pred EEECCCCCCccccC----------hhHhhccchh------hhccCCCCCEEECcCCCcCc-------chHhhcCCCCCCE
Confidence 88888874332110 1111111111 24678999999998764331 2233788999999
Q ss_pred EEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCc--
Q 044387 297 LTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPN-- 374 (446)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~-- 374 (446)
|.++.+.+..+ +..+..+++|++|+++.+.... .++..+..+++|+.|+|..+... . ..|.
T Consensus 211 L~L~~N~l~~l----~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~--~----------~~p~~~ 273 (328)
T 4fcg_A 211 LKIRNSPLSAL----GPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNL--L----------TLPLDI 273 (328)
T ss_dssp EEEESSCCCCC----CGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTC--C----------BCCTTG
T ss_pred EEccCCCCCcC----chhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCch--h----------hcchhh
Confidence 99998765432 2345567899999997654311 12334678999999999886631 1 0111
Q ss_pred ccccceEEEEEEe--ecCChhHHHHHHHHHhcCccccceEEEe
Q 044387 375 CLLQHVKKIEIKG--VEGDDDELILVDYLLKYSSVLEVMVICF 415 (446)
Q Consensus 375 c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~~a~~Le~m~i~~ 415 (446)
....+|+.+.+.+ +.+... --+.+.+.|+.+.+..
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP------~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVPP 310 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCC------GGGGGSCTTCEEECCG
T ss_pred hcCCCCCEEeCCCCCchhhcc------HHHhhccCceEEeCCH
Confidence 1236788887765 222211 1235677787776653
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.88 E-value=9e-10 Score=108.87 Aligned_cols=251 Identities=16% Similarity=0.141 Sum_probs=146.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++.|++..+. ...+|. +..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+-. . +..++.|+.|
T Consensus 68 ~~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~l~~--n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQ--LTDITP-LKNLTKLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCS--SCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred cCCCEEECCCCc--cCCchh-hhccccCCEEECCC--CccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEE
Confidence 467777665432 223343 45577777777777 44432 22566777788877777665532 1 6677778888
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEE
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIV 272 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~ 272 (446)
++.+|...+... - ...++|+.|.+.+. .... .. ....++|++|+++++..... .+..+++|+.+.+...
T Consensus 140 ~l~~n~l~~~~~-~--~~l~~L~~L~l~~~-~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 140 ELSSNTISDISA-L--SGLTSLQQLSFGNQ-VTDL-----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp EEEEEEECCCGG-G--TTCTTCSEEEEEES-CCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred ECCCCccCCChh-h--ccCCcccEeecCCc-ccCc-----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC
Confidence 887776543221 1 24567777777543 1110 00 12346788888777544322 2456778887777543
Q ss_pred eCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEE
Q 044387 273 YGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~ 352 (446)
.... ..+ +..+++++.|.++.+.+.. ...+..+++|++|+++.+...... . +..+++|+.|++.
T Consensus 210 ~l~~--~~~------~~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 210 QISD--ITP------LGILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLG 273 (466)
T ss_dssp CCCC--CGG------GGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECC
T ss_pred cccc--ccc------ccccCCCCEEECCCCCccc-----chhhhcCCCCCEEECCCCccccch--h-hhcCCCCCEEECC
Confidence 2211 111 5567788888887664432 123445678888888765542111 1 6778888888887
Q ss_pred ecccccccccccCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHhcCccccceEEEeecCC
Q 044387 353 KQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLKYSSVLEVMVICFKGSV 419 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~~a~~Le~m~i~~~~~~ 419 (446)
.+.-. . . . +-....+|+.+.+.+ +.+... +.+.+.|+.+.+....-.
T Consensus 274 ~n~l~--~-----~---~--~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 274 ANQIS--N-----I---S--PLAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp SSCCC--C-----C---G--GGTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCS
T ss_pred CCccC--c-----c---c--cccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCC
Confidence 76531 0 0 0 111236788888765 333211 578899999999876443
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.84 E-value=1.1e-11 Score=122.44 Aligned_cols=236 Identities=14% Similarity=0.070 Sum_probs=139.1
Q ss_pred CceEEEEEecCCCc---cccCCcccccCcccEEEEeceeEeecCCC--------CccCCcccEEEeeeecCCchh---hh
Q 044387 116 NAREIELYLDQNHR---VELPEELYTSVSVEVLKLMSDFVIKVPAG--------GTSFPNVKILSVQLESPENSL---TE 181 (446)
Q Consensus 116 ~v~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~l~~~~--------~~~~~~L~~L~L~~~~~~~~~---l~ 181 (446)
++++|.+..+.-.. ..++..+..+++|++|+|++ +.+...+ ....++|++|+|+++.+.+.. +.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~--n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD--NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS--SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC--CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 58888775543221 24555666788999999988 5544311 123557999999999887764 56
Q ss_pred hhhhcCCccceeEEEeecCCCCCCeEE---E-eecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-
Q 044387 182 KLFCSCPALEELSIQAYLNDEGPTTKF---V-ISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF- 256 (446)
Q Consensus 182 ~lls~cp~Le~L~l~~~~~~~~~~~~~---~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~- 256 (446)
..+..||.|++|++.+|...+.....+ + ...++|+.|.+.+|.................++|++|+++++.....
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 677789999999998886421100000 0 01358999998887432210000011112458899999887643211
Q ss_pred -------EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccc-ccccC-ccccceeEEEE
Q 044387 257 -------VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAY-HIWFP-ALSHLQHLEVA 327 (446)
Q Consensus 257 -------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~p-~~~~L~~L~l~ 327 (446)
.....++|+++++..+.....+. ..+...+..+++++.|.++.+.+....... ...+. ..++|++|+++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 11247888888876542211000 014555667889999999876543211100 11111 22478888887
Q ss_pred ecccc---hhHHHHHHhcCCCCcEEEEEecc
Q 044387 328 VGAIG---WAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 328 ~~~~~---~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+... ...+...+..+++|++|++..+.
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 66542 34567777888888888887764
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.84 E-value=1.8e-11 Score=118.10 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=21.8
Q ss_pred cCCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEeec
Q 044387 161 SFPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~~ 199 (446)
.+++|++|+|+++.+.+.. +...+..||+|+.|.|.+|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4556666666666555432 34445556666666666554
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.82 E-value=1.4e-09 Score=107.03 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=31.3
Q ss_pred cccccCcccEEEEeceeEeecC--C---CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 135 ELYTSVSVEVLKLMSDFVIKVP--A---GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 135 ~l~~~~~L~~L~L~~~~~~l~~--~---~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
.+..+++|++|+|++ +.+.. + ....+++|++|+|+++.+.+..-..++.+++.|+.|++.++.
T Consensus 98 ~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 98 AFNGLANLEVLTLTQ--CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTTCTTCCEEECTT--SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred hccCcccCCEEeCCC--CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 333455555555555 43322 1 134455566666655555443223334555666666655554
No 17
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.81 E-value=2e-10 Score=110.67 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=63.1
Q ss_pred cccCCcccccCcccEEEEeceeEeecCC-------CCccCCcccEEEeeeecCCc------hh---hhhhhhcCCcccee
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVPA-------GGTSFPNVKILSVQLESPEN------SL---TEKLFCSCPALEEL 193 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~~-------~~~~~~~L~~L~L~~~~~~~------~~---l~~lls~cp~Le~L 193 (446)
..++..+..+++|++|+|++ +.+... ....+++|++|+|+++.+.. .. +...+..|++|+.|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSG--NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTT--SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHhcCCCccEEECCC--CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 34555566789999999999 655432 24578999999999975431 11 44556789999999
Q ss_pred EEEeecCCCCCC--e-EEEeecCCcceEEEeeec
Q 044387 194 SIQAYLNDEGPT--T-KFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 194 ~l~~~~~~~~~~--~-~~~i~~~~L~~L~l~~~~ 224 (446)
.+++|...+... + ..+...++|+.|.+.+|.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 999987643111 1 001245788888888874
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.78 E-value=1.5e-09 Score=102.80 Aligned_cols=231 Identities=12% Similarity=0.079 Sum_probs=139.0
Q ss_pred CcceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcc
Q 044387 87 TNITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNV 165 (446)
Q Consensus 87 ~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L 165 (446)
+.++.+.+.... ...+.. ......+++|.+..+.- ..+| .+..+++|++|+|++ +.+.. +....+++|
T Consensus 66 ~~L~~L~l~~n~---i~~~~~---~~~l~~L~~L~L~~n~i--~~~~-~~~~l~~L~~L~l~~--n~i~~~~~~~~l~~L 134 (347)
T 4fmz_A 66 TNLEYLNLNGNQ---ITDISP---LSNLVKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNE--DNISDISPLANLTKM 134 (347)
T ss_dssp TTCCEEECCSSC---CCCCGG---GTTCTTCCEEECCSSCC--CCCG-GGTTCTTCSEEECTT--SCCCCCGGGTTCTTC
T ss_pred CCccEEEccCCc---cccchh---hhcCCcCCEEEccCCcc--cCch-HHcCCCcCCEEECcC--CcccCchhhccCCce
Confidence 357777776541 111222 22235788888765432 2333 355688999999988 55443 336678889
Q ss_pred cEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceE
Q 044387 166 KILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLER 245 (446)
Q Consensus 166 ~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~ 245 (446)
++|+++++...... . .+..++.|+.|.+.+|...+... - ...++|+.|.+.+|...... . ....++|+.
T Consensus 135 ~~L~l~~n~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~-~--~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~ 203 (347)
T 4fmz_A 135 YSLNLGANHNLSDL-S-PLSNMTGLNYLTVTESKVKDVTP-I--ANLTDLYSLSLNYNQIEDIS-----P-LASLTSLHY 203 (347)
T ss_dssp CEEECTTCTTCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCSEEECTTSCCCCCG-----G-GGGCTTCCE
T ss_pred eEEECCCCCCcccc-c-chhhCCCCcEEEecCCCcCCchh-h--ccCCCCCEEEccCCcccccc-----c-ccCCCccce
Confidence 99998888544432 2 26778888888888886543322 1 34677888888877432110 1 223567788
Q ss_pred EEeeecccCcE-EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeE
Q 044387 246 LHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHL 324 (446)
Q Consensus 246 L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L 324 (446)
+.+.++..... .+..+++|+++++....... ... +..+++++.|.++.+.+.. ...+..+++|++|
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L 270 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITD-------LSP-LANLSQLTWLEIGTNQISD-----INAVKDLTKLKML 270 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCC-----CGGGTTCTTCCEE
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCC-------Ccc-hhcCCCCCEEECCCCccCC-----ChhHhcCCCcCEE
Confidence 87776544322 15677788887775543221 111 6677788888887664432 1234456677788
Q ss_pred EEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 325 EVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 325 ~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+++.+..... ..+..+|+|+.|++..+.
T Consensus 271 ~l~~n~l~~~---~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 271 NVGSNQISDI---SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred EccCCccCCC---hhhcCCCCCCEEECcCCc
Confidence 7776544221 235677888888877765
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=8.1e-10 Score=102.90 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=97.2
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
++++|.+..+. ...+| .+..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+-. -+..++.|+.|.
T Consensus 42 ~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~--n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~ 113 (308)
T 1h6u_A 42 GITTLSAFGTG--VTTIE-GVQYLNNLIGLELKD--NQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLD 113 (308)
T ss_dssp TCCEEECTTSC--CCCCT-TGGGCTTCCEEECCS--SCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEE
T ss_pred CcCEEEeeCCC--ccCch-hhhccCCCCEEEccC--CcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEE
Confidence 56666654422 22343 344567777777777 44432 22556777777777777665522 355677777777
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeC
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYG 274 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~ 274 (446)
+.+|...+... - ...++|+.|.+.++..... ..+..+++|+.+++.....
T Consensus 114 l~~n~l~~~~~-l--~~l~~L~~L~l~~n~l~~~---------------------------~~l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 114 LTSTQITDVTP-L--AGLSNLQVLYLDLNQITNI---------------------------SPLAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp CTTSCCCCCGG-G--TTCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCCEEECCSSCC
T ss_pred CCCCCCCCchh-h--cCCCCCCEEECCCCccCcC---------------------------ccccCCCCccEEEccCCcC
Confidence 77765432221 0 2345566666555522110 0133445555554433211
Q ss_pred ccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEec
Q 044387 275 EWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQ 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~ 354 (446)
. . +.. +..+++++.|.++.+.+..+ ..+..+++|++|+++.+...... . +..+|+|+.|++..+
T Consensus 164 ~--~-----~~~-l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 164 S--D-----LTP-LANLSKLTTLKADDNKISDI-----SPLASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp C--C-----CGG-GTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEEEEE
T ss_pred C--C-----Chh-hcCCCCCCEEECCCCccCcC-----hhhcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEEccCC
Confidence 1 0 111 55666777777766544321 11445567777777655432111 1 567777777777775
Q ss_pred c
Q 044387 355 S 355 (446)
Q Consensus 355 ~ 355 (446)
.
T Consensus 228 ~ 228 (308)
T 1h6u_A 228 T 228 (308)
T ss_dssp E
T ss_pred e
Confidence 5
No 20
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.76 E-value=1.6e-09 Score=71.84 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=33.4
Q ss_pred cCcccCCCChHHHHHHhccCCccceeeecccccchHHHh
Q 044387 8 KADWISALPDSVLCHILSYLPTKNAVATSLLARRWKLVW 46 (446)
Q Consensus 8 ~~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw 46 (446)
..+.++.||+|++.+||++||.+|.++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 457799999999999999999999999999999999763
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.76 E-value=1.1e-10 Score=122.87 Aligned_cols=199 Identities=14% Similarity=0.062 Sum_probs=85.7
Q ss_pred cccccCcccEEEEeceeEeecC--CC--CccCCcccEEEeeeecCCchhh--hhhhhcCCccceeEEEeecCCCCCCeEE
Q 044387 135 ELYTSVSVEVLKLMSDFVIKVP--AG--GTSFPNVKILSVQLESPENSLT--EKLFCSCPALEELSIQAYLNDEGPTTKF 208 (446)
Q Consensus 135 ~l~~~~~L~~L~L~~~~~~l~~--~~--~~~~~~L~~L~L~~~~~~~~~l--~~lls~cp~Le~L~l~~~~~~~~~~~~~ 208 (446)
.+..+++|++|+|++ +.+.. |. ...+++|++|+|+++.+.+... ...+.+|+.|+.|++.+|...+... .
T Consensus 121 ~l~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~- 196 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSS--NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-V- 196 (768)
T ss_dssp GGGGCTTCCEEECCS--SEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-C-
T ss_pred HHhCCCCCCEEECcC--CccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-c-
Confidence 444566666666665 32221 21 1355666666666665544331 1225556666666666554321111 0
Q ss_pred EeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC---cEEEecCCCceEEEEEEEeCccccCChhhHH
Q 044387 209 VISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRAI 285 (446)
Q Consensus 209 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~ 285 (446)
...++|+.|.+..|...+. ... .-..++|++|+++++... ...+..+++|+.+++....... ..+.
T Consensus 197 -~~l~~L~~L~Ls~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~--- 265 (768)
T 3rgz_A 197 -SRCVNLEFLDVSSNNFSTG----IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPP--- 265 (768)
T ss_dssp -TTCTTCCEEECCSSCCCSC----CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE--SCCC---
T ss_pred -ccCCcCCEEECcCCcCCCC----Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC--ccCc---
Confidence 2344566666655532211 001 123355555555554332 1123445555555543321110 1110
Q ss_pred HHHHhccCceEEEEEchhHHhhhcccccccCc-cccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 286 QLLQRLNNTKNLTVSYGVLCALDHAYHIWFPA-LSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 286 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~-~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
..+++++.|.++.+.+.. ..+..+.. +++|++|++..+.... .++..+..+++|++|++..+.
T Consensus 266 ---~~l~~L~~L~L~~n~l~~---~ip~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 266 ---LPLKSLQYLSLAENKFTG---EIPDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp ---CCCTTCCEEECCSSEEEE---SCCCCSCTTCTTCSEEECCSSEEEE-CCCGGGGGCTTCCEEECCSSE
T ss_pred ---cccCCCCEEECcCCccCC---ccCHHHHhhcCcCCEEECcCCcCCC-ccchHHhcCCCccEEECCCCc
Confidence 034455555555433210 11111211 2556666665433210 112234556666666665544
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.76 E-value=1.7e-08 Score=101.79 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=145.8
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
..+++|++..+.- ..+ |..+..+++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+- ....+.++++|+.
T Consensus 26 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCE
T ss_pred CCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcE
Confidence 4677777765432 233 34556689999999998322 23334577899999999999988754 2344678999999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l 269 (446)
|++++|...+......+-..++|+.|.+.++........ ......++|++|.++++..... .+..+++|+++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCH---hhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999998754322111113467899999998842221100 0012257899999988765432 2456778888877
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc---hhHHHHHHhcCCCC
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG---WAVLPVILSSSQNL 346 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~lL~~~p~L 346 (446)
....... . -..++..+++++.|.++.+.+.............+.+|++|++..+... ...+...+..+++|
T Consensus 180 ~~n~~~~---~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 180 HLSESAF---L---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp ECSBSTT---H---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ccCcccc---c---chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 6543221 1 1334567899999999987654321111111224578999999866543 34455566788999
Q ss_pred cEEEEEecc
Q 044387 347 QSLILRKQS 355 (446)
Q Consensus 347 ~~L~i~~~~ 355 (446)
+.|++..+.
T Consensus 254 ~~l~l~~~~ 262 (549)
T 2z81_A 254 SEVEFDDCT 262 (549)
T ss_dssp CEEEEESCE
T ss_pred ccccccccc
Confidence 999988765
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.74 E-value=6.6e-09 Score=100.11 Aligned_cols=221 Identities=14% Similarity=0.035 Sum_probs=107.7
Q ss_pred CCceEEEEEecCCCccccCC-cccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..++.|.+..+. ...++. .+..+++|++|+|++ +.+.. + .+..+++|++|+|+++.+..- -..++.+++.|
T Consensus 69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred ccCcEEECCCCc--ccccChhhccCCCCcCEEECCC--CCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCC
Confidence 456666554322 223333 233356666666666 33221 1 234566666666666655421 12234556666
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccc---cc----------cceeEEEecCCceEEEeeecccCcEE
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMF---TQ----------AEYKVRITAPSLERLHIMSDIFGKFV 257 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~---~~----------~~~~~~i~ap~L~~L~l~~~~~~~~~ 257 (446)
++|.+.++...+...-. +...++|+.|.+..+...... .. ....+ -..++|++|.+++.....+.
T Consensus 144 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-AIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE-ECCSSCSEEECCSSCCCEEE
T ss_pred cEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccccccccccceeeccccccccc-CCCCcceEEECCCCeeeecc
Confidence 66666665432211100 012345555555554221100 00 00011 12346666666665554444
Q ss_pred EecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHH
Q 044387 258 VHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLP 337 (446)
Q Consensus 258 ~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~ 337 (446)
....++|+.+++....... . ..+..+++++.|.++.+.+.. ..+..+..+++|++|+++.+.... +.
T Consensus 222 ~~~~~~L~~L~l~~n~l~~--~------~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~--~~ 288 (390)
T 3o6n_A 222 GPVNVELTILKLQHNNLTD--T------AWLLNYPGLVEVDLSYNELEK---IMYHPFVKMQRLERLYISNNRLVA--LN 288 (390)
T ss_dssp CCCCSSCCEEECCSSCCCC--C------GGGGGCTTCSEEECCSSCCCE---EESGGGTTCSSCCEEECCSSCCCE--EE
T ss_pred ccccccccEEECCCCCCcc--c------HHHcCCCCccEEECCCCcCCC---cChhHccccccCCEEECCCCcCcc--cC
Confidence 4445667766665432211 1 236677788888887764432 123344456677777776544311 11
Q ss_pred HHHhcCCCCcEEEEEecc
Q 044387 338 VILSSSQNLQSLILRKQS 355 (446)
Q Consensus 338 ~lL~~~p~L~~L~i~~~~ 355 (446)
.....+|+|+.|++..+.
T Consensus 289 ~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CSSSCCTTCCEEECCSSC
T ss_pred cccCCCCCCCEEECCCCc
Confidence 122556777777777765
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.74 E-value=4.2e-10 Score=115.07 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=34.1
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+..+++++.|.++.+.+..........+..+++|++|+++.+.... ..+..+..+|+|+.|++..+.
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCc
Confidence 4556667777766654332100112234455667777765543211 011234566777777776654
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.74 E-value=3.4e-09 Score=107.40 Aligned_cols=203 Identities=16% Similarity=0.077 Sum_probs=90.5
Q ss_pred cCCcccccCcccEEEEeceeEeecC-C-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEE
Q 044387 132 LPEELYTSVSVEVLKLMSDFVIKVP-A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFV 209 (446)
Q Consensus 132 lp~~l~~~~~L~~L~L~~~~~~l~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~ 209 (446)
.|..+..+++|++|++.+ +.+.. | ....+ +|++|++.++.+..- .. ..+|.|+.|.+.++...+.. ..
T Consensus 274 ~~~~~~~l~~L~~L~l~~--~~l~~l~~~~~~~-~L~~L~l~~n~~~~l--~~--~~l~~L~~L~l~~n~~~~~~-~~-- 343 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVS--VTIERVKDFSYNF-GWQHLELVNCKFGQF--PT--LKLKSLKRLTFTSNKGGNAF-SE-- 343 (570)
T ss_dssp STTTTGGGTTCSEEEEES--CEECSCCBCCSCC-CCSEEEEESCBCSSC--CB--CBCSSCCEEEEESCBSCCBC-CC--
T ss_pred chhhhcCcCcccEEEecC--ccchhhhhhhccC-CccEEeeccCccccc--Cc--ccccccCEEeCcCCcccccc-cc--
Confidence 444444567777777777 43332 2 23344 777777777666521 11 35666777777666543111 11
Q ss_pred eecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE--EEecCCCceEEEEEEEeCccccCChhhHHHH
Q 044387 210 ISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEWSRVDPNRAIQL 287 (446)
Q Consensus 210 i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 287 (446)
...++|+.|.+..+...... .........++|++|.++++..... .+..+++|+.+++....... ..+ ...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~---~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSE---FSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEE--EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES--CTT---SCT
T ss_pred ccCCCCCEEeCcCCccCccc--cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc--ccc---hhh
Confidence 23456666666655211000 0000011235666666665433211 24556666666554321110 000 012
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEec
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQ 354 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~ 354 (446)
+..+++++.|.++.+.+.. .....+..+++|++|++..+......++..+..+|+|+.|++..+
T Consensus 417 ~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TTTCTTCCEEECTTSCCEE---CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhcCCCCCEEeCcCCcccc---cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 3445555555555432211 112223334455555554332221122233444555555555443
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.73 E-value=2.9e-09 Score=99.02 Aligned_cols=248 Identities=13% Similarity=0.024 Sum_probs=146.4
Q ss_pred ccccCCcccccCcccEEEEeceeEeecC-C--CCccCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCCCCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKVP-A--GGTSFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLNDEGP 204 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~--~~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~~~~ 204 (446)
...+|..+. ++|++|+|++ +.+.. | .+..+++|++|+|+++.+.... ....+.+++.|+.|+++++......
T Consensus 19 l~~ip~~~~--~~l~~L~L~~--n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred cccCCCCCC--CCCCEEECCC--CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 345555443 5788999988 54432 2 2567889999999888877543 2334456889999999887643111
Q ss_pred CeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc---EEEecCCCceEEEEEEEeCccccCCh
Q 044387 205 TTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSRVDP 281 (446)
Q Consensus 205 ~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~ 281 (446)
. . +...++|+.|.+..+....... .......++|++|.++++.... ..+..+++|+.+++........ .
T Consensus 95 ~-~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-- 166 (306)
T 2z66_A 95 S-N-FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-F-- 166 (306)
T ss_dssp E-E-EETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-E--
T ss_pred h-h-cCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-c--
Confidence 1 1 1346788888888763221100 0011234788888887754321 1245678888887754322110 0
Q ss_pred hhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccc
Q 044387 282 NRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTE 361 (446)
Q Consensus 282 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~ 361 (446)
....+..+++++.|.++.+.+.. ..+..+..+++|++|+++.+...... ...+..+++|+.|++..+.-. ..
T Consensus 167 --~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~--~~ 238 (306)
T 2z66_A 167 --LPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIM--TS 238 (306)
T ss_dssp --ECSCCTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCC--BC
T ss_pred --chhHHhhCcCCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCc--cc
Confidence 11235677889999998765432 12344566778999998765431110 012577899999999877631 11
Q ss_pred cccCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHh
Q 044387 362 EQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLK 403 (446)
Q Consensus 362 ~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~ 403 (446)
.... ......+|+++.+.+ +.+......+.+++-.
T Consensus 239 ~~~~-------~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 239 KKQE-------LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp SSSS-------CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred CHHH-------HHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 1000 111225788888876 7777666667776643
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.71 E-value=5e-09 Score=96.36 Aligned_cols=200 Identities=16% Similarity=0.073 Sum_probs=93.4
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec-CCCCCCeEEEeecCCcce
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL-NDEGPTTKFVISSSTLKR 217 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~-~~~~~~~~~~i~~~~L~~ 217 (446)
++|++|+|+++.. .+....+..+++|++|+|+++.+.+-. ...+.+++.|+.|++.++. ......-. +...++|+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCE
Confidence 4666777666221 222223556667777777666554321 2334556677777776664 22111101 012355666
Q ss_pred EEEeeecccccccccceeEEEecCCceEEEeeecccCcEE---EecCCCceEEEEEEEeCccccCChhhHHHHHHhccCc
Q 044387 218 CTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNT 294 (446)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l 294 (446)
|.+.++...... ....-..++|++|.+++....... +..+++|+.+++....... .. ...+..++++
T Consensus 110 L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~~~~l~~L 179 (285)
T 1ozn_A 110 LHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VP----ERAFRGLHSL 179 (285)
T ss_dssp EECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--EC----TTTTTTCTTC
T ss_pred EECCCCcCCEEC----HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cC----HHHhcCcccc
Confidence 666655221100 000112356666666554332211 3345555555554321110 11 1124455666
Q ss_pred eEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 295 KNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+.|.++.+.+.. ..+..+..+++|++|+++.+.... .....+..+|+|+.|++..+.
T Consensus 180 ~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 180 DRLLLHQNRVAH---VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccc---cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 666666554321 112334455566666665543321 112345666777777666654
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.71 E-value=1.9e-09 Score=106.12 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=99.9
Q ss_pred CceEEEEEecCCCccccC-CcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELP-EELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
+++.|++..+. ...++ ..+..+++|++|+|+++.. .+.+..+..+++|++|+|+++.+..- ....+.++++|+.|
T Consensus 76 ~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 76 NTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL 152 (452)
T ss_dssp TCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred CccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence 55666554422 12232 2333466677777766221 22223455666777777766665432 12334556677777
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEE
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIV 272 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~ 272 (446)
.++++......... +...++|+.|.+.+|........ ......++|++|+++++....+ .+..+++|+.+++...
T Consensus 153 ~L~~N~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 153 WLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp ECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECT---TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred ECCCCCcceeCHhH-HhcCCcccEEeCCCCCCccccCh---hhccCCCCCCEEECCCCcccccccccccccccEEECcCC
Confidence 77666532111100 01245666666665421110000 0001235666666665433321 2344555665555332
Q ss_pred eCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEE
Q 044387 273 YGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~ 352 (446)
... ...+ ..+.++++++.|.++.+.+..+ ....+..+++|++|+++.+.... .....+..+++|+.|+|.
T Consensus 229 ~l~--~~~~----~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 229 HFP--EIRP----GSFHGLSSLKKLWVMNSQVSLI---ERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CCS--EECG----GGGTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECC
T ss_pred cCc--ccCc----ccccCccCCCEEEeCCCcCceE---CHHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEcc
Confidence 111 1111 2245555666666655433211 12233444556666665443210 001123455666666665
Q ss_pred ecc
Q 044387 353 KQS 355 (446)
Q Consensus 353 ~~~ 355 (446)
.++
T Consensus 299 ~Np 301 (452)
T 3zyi_A 299 HNP 301 (452)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.71 E-value=8.3e-09 Score=105.23 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+..+++++.|.++.+.+..+ +.....+++|++|+++.+... .++.-+..+|+|+.|++..+.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l----~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVAL----NLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEE----ECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred hcCccCCCEEECCCCCCCCC----CcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCCC
Confidence 44555666666655433221 111223456666666554431 112223445666666666544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.70 E-value=7.7e-09 Score=102.45 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred CceEEEEEecCCCccccCCccc-ccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELY-TSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
+++.|.+..+. ...+|...+ .+++|++|+|+++.. .+.+..+..+++|++|+|.++.+..-. ...+.++++|++|
T Consensus 81 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 157 (477)
T 2id5_A 81 NLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQL 157 (477)
T ss_dssp TCCEEECCSSC--CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEE
T ss_pred cCCEEECCCCc--CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEE
Confidence 56666654422 234554433 366677777766221 222234456666666666666554321 1234456666666
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
.+.+|...+...-. +...++|+.|.+..+
T Consensus 158 ~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 158 TLEKCNLTSIPTEA-LSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEESCCCSSCCHHH-HTTCTTCCEEEEESC
T ss_pred ECCCCcCcccChhH-hcccCCCcEEeCCCC
Confidence 66666443221100 012455666666655
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.70 E-value=5.6e-09 Score=102.73 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=27.7
Q ss_pred ccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 136 LYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 136 l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
+..+++|++|+|++ +.+...+...+++|++|+|+++.+.+-. +.+++.|+.|++.++.
T Consensus 60 l~~l~~L~~L~Ls~--n~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 60 IEKLTGLTKLICTS--NNITTLDLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp GGGCTTCSEEECCS--SCCSCCCCTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC
T ss_pred hcccCCCCEEEccC--CcCCeEccccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc
Confidence 33455555555555 3333322444555555555555544421 3445555555555554
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.69 E-value=1.2e-07 Score=89.96 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=59.3
Q ss_pred ccccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeE
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTK 207 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~ 207 (446)
...+|..++ ++|++|+|+++.. .++......+++|++|+|+++.+.+- ....+.+++.|+.|+++++...+...-.
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 445666444 5899999998322 23333577899999999998877653 2334678899999999988654322110
Q ss_pred EEeecCCcceEEEeee
Q 044387 208 FVISSSTLKRCTLWVA 223 (446)
Q Consensus 208 ~~i~~~~L~~L~l~~~ 223 (446)
+-..++|+.|.+.++
T Consensus 120 -~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 120 -FKPLSSLTFLNLLGN 134 (353)
T ss_dssp -HTTCTTCSEEECTTC
T ss_pred -hCCCccCCEEECCCC
Confidence 013456777777665
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.69 E-value=7.7e-09 Score=96.49 Aligned_cols=207 Identities=15% Similarity=0.069 Sum_probs=92.2
Q ss_pred ccCCcccccCcccEEEEec-eeEe-ecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEE
Q 044387 131 ELPEELYTSVSVEVLKLMS-DFVI-KVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKF 208 (446)
Q Consensus 131 ~lp~~l~~~~~L~~L~L~~-~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~ 208 (446)
.+|..+..+++|++|+|++ +... ..+.....+++|++|+|+++.+.+. +...+..+++|+.|+++++...+...-.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~- 144 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPS- 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGG-
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChH-
Confidence 4555555566666666663 1111 1122345566666666666655422 2233455666666666665432111101
Q ss_pred EeecCCcceEEEeeecccccccccceeEEEec-CCceEEEeeecccCcE---EEecCCCceEEEEEEEeCccccCChhhH
Q 044387 209 VISSSTLKRCTLWVATEGEMFTQAEYKVRITA-PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRA 284 (446)
Q Consensus 209 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~a-p~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~ 284 (446)
+...++|+.|.+..+...+.... .+ ... ++|++|.+++...... .+..++ |+.+++...... .. .
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~---~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~--~~----~ 213 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPD---SY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE--GD----A 213 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCG---GG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE--EC----C
T ss_pred HhcCCCCCeEECcCCcccCcCCH---HH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc--Cc----C
Confidence 02345566666655522110000 00 011 2556665555432111 112222 454444322111 01 1
Q ss_pred HHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 285 IQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 285 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
...+..+++++.|.++.+.+... ...+..+++|++|+++.+.... .++..+..+++|+.|++..+.
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFD----LGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCB----GGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSE
T ss_pred CHHHhcCCCCCEEECCCCceeee----cCcccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCc
Confidence 12345566666666665543211 1113344566676665443311 122334566777777766654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.67 E-value=3.4e-08 Score=97.83 Aligned_cols=221 Identities=15% Similarity=0.011 Sum_probs=119.3
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..+++|.+..+. ...+ |..+..+++|++|+|++ +.+.. ..+..+++|++|+|+++.+... ....+..+++|
T Consensus 56 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNENI--VSAVEPGAFNNLFNLRTLGLRS--NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNL 130 (477)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS--SCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCCc--cCEeChhhhhCCccCCEEECCC--CcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccC
Confidence 366666664422 1223 34444577788888877 43332 2245677788888877766543 23345677788
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEE
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDV 267 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~ 267 (446)
+.|.+.++...+...-. +...++|+.|.+..+...... .......++|+.|.+.+...... .+..+++|+.+
T Consensus 131 ~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIP----TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp CEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCC----HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred CEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccC----hhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 88888776543111101 023467788888776322110 00112346778887776544322 34567777777
Q ss_pred EEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCc
Q 044387 268 ILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQ 347 (446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~ 347 (446)
++....... ...+ ......+++.|.++.+.+..+ ....+..+++|++|+++.+..... ....+..+++|+
T Consensus 206 ~l~~~~~~~-~~~~-----~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~ 275 (477)
T 2id5_A 206 EISHWPYLD-TMTP-----NCLYGLNLTSLSITHCNLTAV---PYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQ 275 (477)
T ss_dssp EEECCTTCC-EECT-----TTTTTCCCSEEEEESSCCCSC---CHHHHTTCTTCCEEECCSSCCCEE-CTTSCTTCTTCC
T ss_pred eCCCCcccc-ccCc-----ccccCccccEEECcCCccccc---CHHHhcCccccCeeECCCCcCCcc-ChhhccccccCC
Confidence 776532211 0000 011223778888876644321 112244566788888875543110 112346778888
Q ss_pred EEEEEecc
Q 044387 348 SLILRKQS 355 (446)
Q Consensus 348 ~L~i~~~~ 355 (446)
.|.+..+.
T Consensus 276 ~L~L~~n~ 283 (477)
T 2id5_A 276 EIQLVGGQ 283 (477)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88887765
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.66 E-value=2.4e-09 Score=109.42 Aligned_cols=217 Identities=12% Similarity=0.075 Sum_probs=104.4
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++.+.+..... ..+| .+..+++|++|++.+ +.+.. |.. .+++|++|++.++...... -+..+|.|+.|
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~--n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 355 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIR--CQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYL 355 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEES--CCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEE
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEccc--ccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEE
Confidence 4778887766432 3455 555677888888888 54432 434 7777777777777443322 24467777777
Q ss_pred EEEeecCCCCC--CeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc----EEEecCCCceEE
Q 044387 194 SIQAYLNDEGP--TTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDV 267 (446)
Q Consensus 194 ~l~~~~~~~~~--~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~ 267 (446)
++.+|...+.. ... +...++|+.|.+..|..... .......++|++|.++++.... ..+..+++|+.+
T Consensus 356 ~ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYS-DLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp ECCSSCEEEEEECCHH-HHCCSCCCEEECCSCSEEEE-----CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred ECcCCccCCCcchhhh-hccCCcccEeECCCCccccc-----hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 77766432110 000 01345677777766621110 0011124566666666543221 123455666666
Q ss_pred EEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCc
Q 044387 268 ILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQ 347 (446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~ 347 (446)
++....... .. ...+..+++++.|.++.+.+.. ...+..+..+++|++|+++.+.... ..+..+..+++|+
T Consensus 430 ~l~~n~l~~--~~----~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 430 DISYTNTKI--DF----DGIFLGLTSLNTLKMAGNSFKD--NTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQ 500 (606)
T ss_dssp ECTTSCCEE--CC----TTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred ECcCCCCCc--cc----hhhhcCCCCCCEEECCCCcCCC--cchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCC
Confidence 554322111 11 1124455556666655543321 0012233344455555554332210 0111234455555
Q ss_pred EEEEEecc
Q 044387 348 SLILRKQS 355 (446)
Q Consensus 348 ~L~i~~~~ 355 (446)
+|++..+.
T Consensus 501 ~L~Ls~N~ 508 (606)
T 3vq2_A 501 LLNMSHNN 508 (606)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 55555443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.65 E-value=1.1e-08 Score=98.50 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=101.1
Q ss_pred CCceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 115 RNAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
.+++.+.+... ....+|..++. +++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+- ....+.+++.|+.
T Consensus 45 ~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCE
Confidence 46777777653 24567777655 89999999998322 23334677899999999999987653 2344678999999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDI 271 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~ 271 (446)
|++.++.......-- +...++|+.|.+.++....... ......++|++|.+++.......+..+++|+.+.+..
T Consensus 122 L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 122 LVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp EECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred EECCCCccCcCCHHH-hcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence 999998765332211 0236789999999884322100 0112358899999988766655666778888776643
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.64 E-value=7.2e-09 Score=101.57 Aligned_cols=244 Identities=18% Similarity=0.109 Sum_probs=123.1
Q ss_pred cccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEE
Q 044387 130 VELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKF 208 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~ 208 (446)
..+|..+. ++++.|+|+++.. .+....+..+++|++|+|+++.+..-. ...+.++++|+.|+|.++.......-.
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~- 131 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGA- 131 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTT-
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhH-
Confidence 34554333 4667777776222 222334566777777777776665421 234556777777777776543221111
Q ss_pred EeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE----EEecCCCceEEEEEEEeCccccCChhhH
Q 044387 209 VISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF----VVHDLNSLTDVILDIVYGEWSRVDPNRA 284 (446)
Q Consensus 209 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~----~~~~~p~L~~~~l~~~~~~~~~~~~~~~ 284 (446)
+...++|+.|.+.++....-. ....-..++|++|.+.+...... .+.++++|+.+++....... ..
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~---- 201 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIP----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP---- 201 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEEC----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC----
T ss_pred hhccccCceeeCCCCcccccC----HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc----
Confidence 023456777777665221100 00011236677777665322111 23456667766664332211 11
Q ss_pred HHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccccccccccc
Q 044387 285 IQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQF 364 (446)
Q Consensus 285 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~ 364 (446)
-+..+++|+.|.++.+.+.. .....+..+++|++|++..+..... ....+..+++|+.|+|..+.-. .....
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~--~~~~~ 273 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSA---IRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLT--LLPHD 273 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCC--CCCTT
T ss_pred --ccCCCcccCEEECCCCccCc---cChhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCC--ccChh
Confidence 14556677777777664432 1234455666777777754432110 0123456788888877776531 10000
Q ss_pred CcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHh
Q 044387 365 GWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLK 403 (446)
Q Consensus 365 ~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~ 403 (446)
.+ ....+|+.+.+.+ +.+.+....+..++-.
T Consensus 274 ~~--------~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 274 LF--------TPLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp TT--------SSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred Hh--------ccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 00 1135677777765 6666554455555544
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.64 E-value=6.9e-09 Score=106.57 Aligned_cols=222 Identities=9% Similarity=0.052 Sum_probs=144.3
Q ss_pred CCceEEEEEecCCCccc------------------cCCccc--ccCcccEEEEeceeEeec---CCCCccCCcccEEEee
Q 044387 115 RNAREIELYLDQNHRVE------------------LPEELY--TSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQ 171 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~------------------lp~~l~--~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~ 171 (446)
..++.|.+..+.- .. +|..+. .+++|++|+|++ +.+. ++....+++|++|+|+
T Consensus 206 ~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPF--VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN--CPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC--CTTCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCcc--ccccccccccccccchhcccCchhhhhcccCCCCEEEecC--CcCCccChHHHhcCCCCCEEECc
Confidence 4788998876442 23 899988 899999999999 6433 2356789999999999
Q ss_pred eec-CCchh----hhhh--hhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCce
Q 044387 172 LES-PENSL----TEKL--FCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLE 244 (446)
Q Consensus 172 ~~~-~~~~~----l~~l--ls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~ 244 (446)
++. +.+.. +..+ +..+++|+.|.+.+|....+.....+...++|+.|.+..+...+.. . .....++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i----p-~~~~l~~L~ 356 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL----P-AFGSEIKLA 356 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC----C-CCEEEEEES
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch----h-hhCCCCCCC
Confidence 998 77622 3333 2456999999999997642222000134578999999988443221 1 223457899
Q ss_pred EEEeeecccCcE--EEecCCC-ceEEEEEEEeCccccCChhhHHHHHHh--ccCceEEEEEchhHHhhhcccccccC---
Q 044387 245 RLHIMSDIFGKF--VVHDLNS-LTDVILDIVYGEWSRVDPNRAIQLLQR--LNNTKNLTVSYGVLCALDHAYHIWFP--- 316 (446)
Q Consensus 245 ~L~l~~~~~~~~--~~~~~p~-L~~~~l~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~~~~~~~p--- 316 (446)
+|.++++....+ .+..+++ |+.+++....... +...+.. +++++.|.++.+.+... .+..++
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-------lp~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~~~ 426 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-------IPNIFDAKSVSVMSAIDFSYNEIGSV---DGKNFDPLD 426 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-------CCSCCCTTCSSCEEEEECCSSCTTTT---TTCSSCTTC
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcc-------cchhhhhcccCccCEEECcCCcCCCc---chhhhcccc
Confidence 999887654311 2456777 8888876543221 1112333 34789999987755421 122333
Q ss_pred ----ccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 317 ----ALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 317 ----~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.+.+|++|+++.+... ..-..+++.+++|+.|++..+.-
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC
T ss_pred cccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC
Confidence 4568889988766543 11224567789999999987663
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.64 E-value=2e-09 Score=106.91 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=121.0
Q ss_pred cCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 139 SVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
+++|++|+|++ +.+.. ..+..+++|++|+|+++.+.+.. . +..+|+|+.|++++|... . +...++|
T Consensus 33 ~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~---~---l~~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSG--NPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQ---E---LLVGPSI 101 (487)
T ss_dssp GGGCCEEECCS--SCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEEE---E---EEECTTC
T ss_pred CCCccEEEeeC--CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcCC---C---CCCCCCc
Confidence 45788888888 54432 24567888888888888776432 1 677888888888887642 1 1345788
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccC---cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhcc
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLN 292 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~ 292 (446)
+.|.+.+|.... ......|+|+.|.++++... ...+..+++|+.+++...... +..+ ..+...++
T Consensus 102 ~~L~L~~N~l~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~---~~l~~~l~ 169 (487)
T 3oja_A 102 ETLHAANNNISR-------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TVNF---AELAASSD 169 (487)
T ss_dssp CEEECCSSCCCC-------EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC--EEEG---GGGGGGTT
T ss_pred CEEECcCCcCCC-------CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC--CcCh---HHHhhhCC
Confidence 888888874332 11223478888888876543 234567888888877543221 1111 23344678
Q ss_pred CceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 293 NTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 293 ~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+++.|.++.+.+..+ .....+++|++|+++.+.... ++.-+..+|+|+.|++..+.-
T Consensus 170 ~L~~L~Ls~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp TCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCC
T ss_pred cccEEecCCCccccc-----cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcC
Confidence 999999988765432 122246789999998765421 112256789999999988663
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.63 E-value=1.2e-08 Score=100.35 Aligned_cols=245 Identities=17% Similarity=0.078 Sum_probs=153.0
Q ss_pred ccccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeE
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTK 207 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~ 207 (446)
...+|..+. ++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+-. ...+.++++|+.|+|.++.......-.
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhh
Confidence 345665443 6899999998332 333456788999999999999886532 345778999999999998754322211
Q ss_pred EEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC-cE---EEecCCCceEEEEEEEeCccccCChhh
Q 044387 208 FVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG-KF---VVHDLNSLTDVILDIVYGEWSRVDPNR 283 (446)
Q Consensus 208 ~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~ 283 (446)
+-..++|+.|.+.++....-. ....-..|+|++|.+.++... .+ .+..+++|+.+++....... . +
T Consensus 143 -~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~-- 212 (452)
T 3zyi_A 143 -FEYLSKLRELWLRNNPIESIP----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M-P-- 212 (452)
T ss_dssp -SSSCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C-C--
T ss_pred -hcccCCCCEEECCCCCcceeC----HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c-c--
Confidence 023678999999988322100 001123588999999874322 11 24568889888876443221 1 1
Q ss_pred HHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccccc
Q 044387 284 AIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQ 363 (446)
Q Consensus 284 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~ 363 (446)
-+..+++++.|.++.+.+..+ ....+..+++|++|++..+..... ....+..+++|+.|+|..+.-. ....
T Consensus 213 ---~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~--~~~~ 283 (452)
T 3zyi_A 213 ---NLTPLVGLEELEMSGNHFPEI---RPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLS--SLPH 283 (452)
T ss_dssp ---CCTTCTTCCEEECTTSCCSEE---CGGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCS--CCCT
T ss_pred ---cccccccccEEECcCCcCccc---CcccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCC--ccCh
Confidence 156678899999987755422 234456677899998875543111 1223577899999999887631 1110
Q ss_pred cCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHHh
Q 044387 364 FGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLLK 403 (446)
Q Consensus 364 ~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll~ 403 (446)
..+ . ...+|+.+.+.+ +.+.+....+..++-+
T Consensus 284 ~~~-------~-~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 284 DLF-------T-PLRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp TSS-------T-TCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred HHh-------c-cccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 001 1 236788888876 7776555555555544
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.63 E-value=3.7e-09 Score=103.66 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=105.6
Q ss_pred CceEEEEEecCCCccccC-CcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELP-EELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
+++.|.+..+. ...++ ..+..+++|++|+|+++.. .+.+..+..+++|++|+|+++.+..- -...+.++++|+.|
T Consensus 65 ~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 65 NTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKEL 141 (440)
T ss_dssp TCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEE
T ss_pred CCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCcee
Confidence 45555554322 22233 2233466777777766211 12222345666777777776655432 12235566777777
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEE
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIV 272 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~ 272 (446)
.+.++......... +...++|+.|.+..+........ ......++|++|+++++....+ .+..+++|+.+++...
T Consensus 142 ~L~~N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 142 WLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp ECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECT---TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred eCCCCcccccCHHH-hhhCcccCEeCCCCCCCcceeCc---chhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 77666532111100 01245666666665421110000 0011235666666665543321 2345666666665432
Q ss_pred eCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEE
Q 044387 273 YGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~ 352 (446)
... ... ...+.++++|+.|.++.+.+..+ ....+..+++|++|+|+.+.... .....+..+++|+.|+|.
T Consensus 218 ~l~--~~~----~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 218 HLS--AIR----PGSFQGLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp CCC--EEC----TTTTTTCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECC
T ss_pred ccC--ccC----hhhhccCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEcC
Confidence 111 111 12255666777777665543321 12334455666777665443211 011234556777777766
Q ss_pred ecc
Q 044387 353 KQS 355 (446)
Q Consensus 353 ~~~ 355 (446)
.++
T Consensus 288 ~Np 290 (440)
T 3zyj_A 288 HNP 290 (440)
T ss_dssp SSC
T ss_pred CCC
Confidence 655
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=102.89 Aligned_cols=260 Identities=15% Similarity=0.076 Sum_probs=154.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
.+++++.+..+. ...+|..+..+ +|++|++.+ +.+..-+...+++|++|++.++.+....-. ..+|.|+.|+
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~--n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVN--CKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEES--CBCSSCCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEE
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeecc--CcccccCcccccccCEEeCcCCcccccccc---ccCCCCCEEe
Confidence 356666665432 23577766677 888998888 655443335788899998888876543211 6788899998
Q ss_pred EEeecCCCCCCeE-EEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc----EEEecCCCceEEEE
Q 044387 195 IQAYLNDEGPTTK-FVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVIL 269 (446)
Q Consensus 195 l~~~~~~~~~~~~-~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l 269 (446)
+.+|...+..... .+...++|+.|.+.+|.... ........++|++|.+.++.... ..+.++++|+.+++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccc-----ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 8887643111000 00135788888888773221 11113456888888887754321 23457788888877
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEE
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSL 349 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L 349 (446)
....... . ....+.++++++.|.++.+.+.. ...+..+..+++|+.|+++.+.... ..+..+..+|+|+.|
T Consensus 429 ~~n~l~~--~----~~~~~~~l~~L~~L~l~~n~l~~--~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 429 SHTHTRV--A----FNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTSCCEE--C----CTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEE
T ss_pred cCCcccc--c----chhhhhcCCcCcEEECcCCcCcc--ccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEE
Confidence 5432211 1 12236677888888888765431 1123445567788888887654321 112335678889988
Q ss_pred EEEecccccccccccCcccccccCcccccceEEEEEEe--ecCChhHHHHH-HHHHhcCc
Q 044387 350 ILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILV-DYLLKYSS 406 (446)
Q Consensus 350 ~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~-~~ll~~a~ 406 (446)
++..+.-. ......+ . ...+|+.+.+.+ +.|......+. .++-.+..
T Consensus 500 ~l~~n~l~--~~~~~~~------~--~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 500 NMASNQLK--SVPDGIF------D--RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp ECCSSCCS--CCCTTTT------T--TCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred eCCCCcCC--CCCHHHh------h--cccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence 88876531 1110001 1 236788888876 67766666666 55555443
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.61 E-value=2.7e-09 Score=109.10 Aligned_cols=269 Identities=16% Similarity=0.148 Sum_probs=146.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
.++++|++..+. ...+|..+..+++|++|+|++ +.+. +.....+++|++|+|.++.+....-...+..+++|+
T Consensus 278 ~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTATH--LSELPSGLVGLSTLKKLVLSA--NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTT--CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cCCCEEeccCCc--cCCCChhhcccccCCEEECcc--CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 467777765432 236777666777788888877 4332 224456666777766666554332223345566666
Q ss_pred eeEEEeecCCCCC--CeEEEeecCCcceEEEeeeccccccc------c----------cc-----eeEEEecCCceEEEe
Q 044387 192 ELSIQAYLNDEGP--TTKFVISSSTLKRCTLWVATEGEMFT------Q----------AE-----YKVRITAPSLERLHI 248 (446)
Q Consensus 192 ~L~l~~~~~~~~~--~~~~~i~~~~L~~L~l~~~~~~~~~~------~----------~~-----~~~~i~ap~L~~L~l 248 (446)
.|++.++...+.. ... +...++|+.|.+..+....... . .. .......++|++|++
T Consensus 354 ~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 6666655432110 000 0123445555554442110000 0 00 000112356777777
Q ss_pred eecccCc---EEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEE
Q 044387 249 MSDIFGK---FVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLE 325 (446)
Q Consensus 249 ~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~ 325 (446)
+++.... ..+..+++|+++++........... ....+..+++++.|.++.+.+.. ..+..+..+++|++|+
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---KTNSLQTLGRLEILVLSFCDLSS---IDQHAFTSLKMMNHVD 506 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---SSCGGGGCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEE
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---cchhhccCCCccEEECCCCccCc---cChhhhccccCCCEEE
Confidence 6654321 1245677777777654332110000 11247788999999998875432 2244566778999999
Q ss_pred EEecccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCc--ccccceEEEEEEe--ecCChhHHHHHHHH
Q 044387 326 VAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPN--CLLQHVKKIEIKG--VEGDDDELILVDYL 401 (446)
Q Consensus 326 l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~--c~~~~L~~v~i~~--~~g~~~~~~l~~~l 401 (446)
++.+..... .+..+..+++| .|++..+.-. .. .+. ....+|+.+.+.+ +.+......++.++
T Consensus 507 Ls~N~l~~~-~~~~l~~l~~L-~L~L~~N~l~--~~----------~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 507 LSHNRLTSS-SIEALSHLKGI-YLNLASNHIS--II----------LPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp CCSSCCCGG-GGGGGTTCCSC-EEECCSSCCC--CC----------CGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CCCCccCcC-ChhHhCccccc-EEECcCCccc--cc----------CHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 987654322 23445677888 7777776531 10 111 1236788998876 78887778888888
Q ss_pred HhcCccc
Q 044387 402 LKYSSVL 408 (446)
Q Consensus 402 l~~a~~L 408 (446)
-.+...+
T Consensus 573 ~~~~~~~ 579 (606)
T 3t6q_A 573 KENMQKL 579 (606)
T ss_dssp HHCGGGE
T ss_pred HhCcccc
Confidence 7764443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.60 E-value=1.2e-09 Score=101.98 Aligned_cols=245 Identities=8% Similarity=-0.022 Sum_probs=149.2
Q ss_pred cceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec--CC-CCccCCc
Q 044387 88 NITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV--PA-GGTSFPN 164 (446)
Q Consensus 88 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~--~~-~~~~~~~ 164 (446)
.|+.+.+....-.....+...+. .-..++.|.+.....-...+|..+..+++|++|+|++ +.+. .| ....+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH--TNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE--ECCEEECCGGGGGCTT
T ss_pred eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC--CeeCCcCCHHHhCCCC
Confidence 57777777552111001221111 1357899998742222235777778899999999999 5443 23 4678999
Q ss_pred ccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecC-CcceEEEeeecccccccccceeEEEecCCc
Q 044387 165 VKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSS-TLKRCTLWVATEGEMFTQAEYKVRITAPSL 243 (446)
Q Consensus 165 L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~-~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L 243 (446)
|++|+|+++.+.+. +...+..+|+|++|.+.++...+..... +...+ .|+.|.+..+...+..... +...+|
T Consensus 127 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~-----~~~l~L 199 (313)
T 1ogq_A 127 LVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPT-----FANLNL 199 (313)
T ss_dssp CCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGG-----GGGCCC
T ss_pred CCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChH-----HhCCcc
Confidence 99999999887642 3344678899999999988653111111 01233 8999999887432111001 111238
Q ss_pred eEEEeeecccC---cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCcccc
Q 044387 244 ERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSH 320 (446)
Q Consensus 244 ~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~ 320 (446)
++|.++++... ...+..+++|+.+++....... ..+ .+..+++++.|.++.+.+.. ..+..+..+++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~-----~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~ 269 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF--DLG-----KVGLSKNLNGLDLRNNRIYG---TLPQGLTQLKF 269 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC--BGG-----GCCCCTTCCEEECCSSCCEE---CCCGGGGGCTT
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee--ecC-----cccccCCCCEEECcCCcccC---cCChHHhcCcC
Confidence 99998876433 2235678999999886543221 111 15567899999998875531 22444567789
Q ss_pred ceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 321 LQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 321 L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
|++|+++.+.... .++.. ..+++|+.|++..+.
T Consensus 270 L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccc-cCCCC-ccccccChHHhcCCC
Confidence 9999997654321 11111 567788887777655
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.60 E-value=2.1e-08 Score=94.28 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCcccc-CCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
+++.|.+..+.- ..+ |..+..+++|++|+|++ +.+..-+...+++|++|+++++.+..- ....+.+++.|+.|+
T Consensus 77 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~--n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 77 NLHTLILINNKI--SKISPGAFAPLVKLERLYLSK--NQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151 (330)
T ss_dssp TCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCS--SCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred CCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCC--CcCCccChhhcccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence 555555543221 222 33444466666666666 333321122236666666666655432 223355666677776
Q ss_pred EEeecCCC--CCCeEEEeecCCcceEEEeee
Q 044387 195 IQAYLNDE--GPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 195 l~~~~~~~--~~~~~~~i~~~~L~~L~l~~~ 223 (446)
+.++.... ..... +...++|+.|.+..+
T Consensus 152 l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 152 LGTNPLKSSGIENGA-FQGMKKLSYIRIADT 181 (330)
T ss_dssp CCSSCCCGGGBCTTG-GGGCTTCCEEECCSS
T ss_pred CCCCcCCccCcChhh-ccCCCCcCEEECCCC
Confidence 66654321 00000 012355666666655
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.58 E-value=3.8e-09 Score=103.93 Aligned_cols=146 Identities=16% Similarity=0.074 Sum_probs=90.2
Q ss_pred CCceEEEeeecccCcE---EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCc
Q 044387 241 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPA 317 (446)
Q Consensus 241 p~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~ 317 (446)
++|++|+++++..... .+..+++|+.+++....... .. ...+..+++++.|.++.+.+.. .....+..
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~----~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--ID----DNAFWGLTHLLKLNLSQNFLGS---IDSRMFEN 345 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--EC----TTTTTTCTTCCEEECCSSCCCE---ECGGGGTT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc--cC----hhHhcCcccCCEEECCCCccCC---cChhHhcC
Confidence 5788888877654322 24678999999885433221 11 1236778999999999875532 22344567
Q ss_pred cccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEe--ecCChhHH
Q 044387 318 LSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDEL 395 (446)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~ 395 (446)
+++|++|+++.+..... .+..+..+|+|+.|++..+.-. ...... . ....+|+++.+.+ +.+....+
T Consensus 346 l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~--~~~~~~-------~-~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLK--SVPDGI-------F-DRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCS--CCCTTT-------T-TTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCCEEECCCCccccc-ChhhccccccccEEECCCCccc--cCCHhH-------h-ccCCcccEEEccCCCcccCCCcc
Confidence 78999999987654211 1234577999999999986631 111000 1 1246899999876 77776655
Q ss_pred HHH-HHHHhcCc
Q 044387 396 ILV-DYLLKYSS 406 (446)
Q Consensus 396 ~l~-~~ll~~a~ 406 (446)
... .++-.+..
T Consensus 415 ~~l~~~l~~~~~ 426 (455)
T 3v47_A 415 DYLSRWLNKNSQ 426 (455)
T ss_dssp HHHHHHHHHTTT
T ss_pred hHHHHHHHhCcc
Confidence 555 44444433
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.56 E-value=3.9e-09 Score=98.69 Aligned_cols=188 Identities=10% Similarity=0.109 Sum_probs=109.7
Q ss_pred cCcccEEEEeceeEeecCC---CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 139 SVSVEVLKLMSDFVIKVPA---GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~---~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
+++|++|+|++ +.+... .+..+++|++|+|+++.+.+.. . +..++.|+.|++++|... . +...++|
T Consensus 33 ~~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~---~---l~~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSG--NPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ---E---LLVGPSI 101 (317)
T ss_dssp GGGCSEEECTT--SCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEE---E---EEECTTC
T ss_pred CCCCCEEECcC--CccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccc---c---ccCCCCc
Confidence 45677777776 444331 2456677777777776665421 1 556777777777766532 1 1234667
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccC---cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhcc
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLN 292 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~ 292 (446)
+.|.+..+.... ......++|++|.++++... ...+..+++|+.+++....... .. ...+...++
T Consensus 102 ~~L~l~~n~l~~-------~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~---~~~~~~~l~ 169 (317)
T 3o53_A 102 ETLHAANNNISR-------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VN---FAELAASSD 169 (317)
T ss_dssp CEEECCSSCCSE-------EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EE---GGGGGGGTT
T ss_pred CEEECCCCccCC-------cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--cc---HHHHhhccC
Confidence 777777663221 11222467777777765443 2234567777777765432211 11 123345678
Q ss_pred CceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 293 NTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 293 ~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+++.|.++.+.+..+ .....+++|++|+++.+.... +..-+..+++|+.|++..+.-
T Consensus 170 ~L~~L~L~~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp TCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCC
T ss_pred cCCEEECCCCcCccc-----ccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcc
Confidence 899999987765432 112236789999997665421 111266789999999988763
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=1.4e-08 Score=106.90 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=139.2
Q ss_pred CceEEEEEecCCCccccCC--cccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCc-cce
Q 044387 116 NAREIELYLDQNHRVELPE--ELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPA-LEE 192 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~-Le~ 192 (446)
.++.|.+..+.- ..+|. .+..+++|+.|+|+++... ..|.+..+++|+.|+|+++.+. .+..-+..++. |+.
T Consensus 549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 678777765443 37787 6777889999999883222 3356678889999999988877 34445777888 999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeeccccccccc-ceeEEEecCCceEEEeeecccCcEE---EecCCCceEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQA-EYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVI 268 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~ 268 (446)
|.+.+|....+...-.....++|+.|.+..+...+....- ...-....++|+.|.++++....+. +..+++|+.++
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 9998887542221110012244888888887443211000 0000123458899999887654322 23678999988
Q ss_pred EEEEeCccccCChhh---HHHHHHhccCceEEEEEchhHHhhhcccccccC--ccccceeEEEEecccchhHHHHHHhcC
Q 044387 269 LDIVYGEWSRVDPNR---AIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFP--ALSHLQHLEVAVGAIGWAVLPVILSSS 343 (446)
Q Consensus 269 l~~~~~~~~~~~~~~---~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p--~~~~L~~L~l~~~~~~~~~l~~lL~~~ 343 (446)
+...... ...... ....+..+++|+.|.++.+.+..+ +..+. .+++|++|+++.+.... ++.-+..+
T Consensus 704 Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l----p~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L 775 (876)
T 4ecn_A 704 LSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL----SDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNS 775 (876)
T ss_dssp CCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC----CGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGC
T ss_pred CCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccc----hHHhhhccCCCcCEEEeCCCCCCc--cchhhhcC
Confidence 8654322 111100 000123445899999988755422 33333 67889999997765432 34446688
Q ss_pred CCCcEEEEEecc
Q 044387 344 QNLQSLILRKQS 355 (446)
Q Consensus 344 p~L~~L~i~~~~ 355 (446)
++|+.|+|..+.
T Consensus 776 ~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 776 SQLKAFGIRHQR 787 (876)
T ss_dssp TTCCEEECCCCB
T ss_pred CCCCEEECCCCC
Confidence 999999997744
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.55 E-value=1.8e-08 Score=94.71 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=82.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchh-hhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSL-TEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~-l~~lls~cp~L 190 (446)
..++.|.+..+. ...+|..++ ++|++|++++ +.+.. ..+..+++|++|+|+++.+.... ....+.+++.|
T Consensus 100 ~~L~~L~Ls~n~--l~~l~~~~~--~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLYLSKNQ--LKELPEKMP--KTLQELRVHE--NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEECCSSC--CSBCCSSCC--TTCCEEECCS--SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEECCCCc--CCccChhhc--ccccEEECCC--CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 478888886543 346676555 7999999999 54443 23568999999999999887644 45667889999
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeeccc
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIF 253 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 253 (446)
+.|.+.++....... ...++|+.|.+.++....... ......++|++|.++++..
T Consensus 174 ~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 174 SYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp CEEECCSSCCCSCCS----SCCTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCccccCCc----cccccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcC
Confidence 999999987543222 123678888887763221000 0011235677776666543
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.54 E-value=9.1e-08 Score=101.59 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=46.8
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC--C-C--CccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP--A-G--GTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~--~-~--~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
+++.|.+..+.-. ...|..+..+++|++|+|++ +.+.. + . ...+++|++|+|+++.+.+......++++++|
T Consensus 74 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 74 NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYF--CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp TCCEEECTTCCCC-EECTTSSCSCSSCCCEECTT--CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCEEECCCCcCc-ccCHhHccCCcccCEeeCcC--CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 5565555432211 12244445567777777776 44432 2 1 45677777777777766554344456667777
Q ss_pred ceeEEEeecC
Q 044387 191 EELSIQAYLN 200 (446)
Q Consensus 191 e~L~l~~~~~ 200 (446)
+.|.+.++..
T Consensus 151 ~~L~Ls~N~i 160 (844)
T 3j0a_A 151 KSIDFSSNQI 160 (844)
T ss_dssp CEEEEESSCC
T ss_pred CEEECCCCcC
Confidence 7777776643
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.54 E-value=1.1e-09 Score=101.88 Aligned_cols=207 Identities=18% Similarity=0.135 Sum_probs=88.5
Q ss_pred ccCCccc-ccCcccEEEEeceeEeec-----CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCC
Q 044387 131 ELPEELY-TSVSVEVLKLMSDFVIKV-----PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGP 204 (446)
Q Consensus 131 ~lp~~l~-~~~~L~~L~L~~~~~~l~-----~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~ 204 (446)
.+|...+ .+++|++|+|++ +.+. +.....+++|++|+|+++.+.. +...+.+++.|+.|.+.++...+..
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~ 117 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMS 117 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESST
T ss_pred ccCHhHhhccccCCEEECCC--CccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCcccccc
Confidence 3444433 355566666655 2221 1122345556666665554432 2222444556666655555332111
Q ss_pred CeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCc----EEEecCCCceEEEEEEEeCccccCC
Q 044387 205 TTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVD 280 (446)
Q Consensus 205 ~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~ 280 (446)
....+...++|+.|.+.++...... .......++|++|.++++.... ..+..+++|+.+++....... ..
T Consensus 118 ~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~ 191 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LS 191 (306)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECS----TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE--EC
T ss_pred cchhhhhccCCCEEECCCCcCCccc----hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC--cC
Confidence 1000022345555555554211000 0000123556666655543221 123455666666554321111 11
Q ss_pred hhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCC-CCcEEEEEecc
Q 044387 281 PNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQ-NLQSLILRKQS 355 (446)
Q Consensus 281 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p-~L~~L~i~~~~ 355 (446)
...+..+++++.|.++.+.+..+ ....+..+++|++|+++.+...... ...+..+| +|+.|++..+.
T Consensus 192 ----~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 192 ----PTAFNSLSSLQVLNMSHNNFFSL---DTFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCSBC---CSGGGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCC
T ss_pred ----HHHhcCCCCCCEEECCCCccCcc---ChhhccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCC
Confidence 12245556667776665543221 1122344556666666544321110 11133443 67777766655
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.52 E-value=6e-08 Score=98.62 Aligned_cols=71 Identities=11% Similarity=-0.023 Sum_probs=31.4
Q ss_pred cCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcce
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKR 217 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~ 217 (446)
+++|++|+|++ +.+.. |. .+++|++|+|+++.+..- . ...++|+.|.+.+|.... +. ...++|+.
T Consensus 80 l~~L~~L~Ls~--N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L~~N~l~~---lp--~~l~~L~~ 145 (622)
T 3g06_A 80 PPELRTLEVSG--NQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWIFGNQLTS---LP--VLPPGLQE 145 (622)
T ss_dssp CTTCCEEEECS--CCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEECCSSCCSC---CC--CCCTTCCE
T ss_pred CCCCCEEEcCC--CcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEECCCCCCCc---CC--CCCCCCCE
Confidence 34555555555 33322 11 445555555555544331 1 134455555555543221 11 12245555
Q ss_pred EEEeee
Q 044387 218 CTLWVA 223 (446)
Q Consensus 218 L~l~~~ 223 (446)
|.+.+|
T Consensus 146 L~Ls~N 151 (622)
T 3g06_A 146 LSVSDN 151 (622)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555554
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.52 E-value=3.2e-08 Score=100.91 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=124.7
Q ss_pred CCceEEEEEecCCCccccCC-cccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..++.|.+..+. ...++. .+..+++|++|+|++ +.+.. | .+..+++|++|+|+++.+..- ...+++++++|
T Consensus 75 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEECCCCC--CCCCChHHhcCCCCCCEEECCC--CcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCC
Confidence 467777765432 233443 444578888888887 43332 2 346788888888888876632 23345677888
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEE
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILD 270 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~ 270 (446)
+.|.+.+|...+...-. +...++|+.|.+.++..... -.-..|+|+.|.++++.... +...++|+.+++.
T Consensus 150 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~-------~~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~ls 219 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLST--LAIPIAVEELDAS 219 (597)
T ss_dssp CEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC-------CGGGCTTCSEEECCSSCCSE--EECCTTCSEEECC
T ss_pred CEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc-------ChhhhhhhhhhhcccCcccc--ccCCchhheeecc
Confidence 88888887654222111 02346788888877633211 01124778888777665432 3456677777665
Q ss_pred EEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEE
Q 044387 271 IVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLI 350 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~ 350 (446)
...... +.+ ...++++.|.++.+.+.. ...+..+++|+.|+++.+..... .+..+..+++|+.|+
T Consensus 220 ~n~l~~--~~~-------~~~~~L~~L~L~~n~l~~-----~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 220 HNSINV--VRG-------PVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLY 284 (597)
T ss_dssp SSCCCE--EEC-------SCCSCCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEE
T ss_pred CCcccc--ccc-------ccCCCCCEEECCCCCCCC-----ChhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEE
Confidence 432211 000 112578888888765432 23455677899999976654211 123456789999999
Q ss_pred EEeccc
Q 044387 351 LRKQSR 356 (446)
Q Consensus 351 i~~~~~ 356 (446)
+..+.-
T Consensus 285 Ls~N~l 290 (597)
T 3oja_B 285 ISNNRL 290 (597)
T ss_dssp CTTSCC
T ss_pred CCCCCC
Confidence 987653
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=2.1e-08 Score=105.59 Aligned_cols=226 Identities=9% Similarity=-0.005 Sum_probs=141.5
Q ss_pred CCceEEEEEecCCCcc----------------ccCCccc--ccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeee
Q 044387 115 RNAREIELYLDQNHRV----------------ELPEELY--TSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLE 173 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~ 173 (446)
.+++.|.+..+.-... .+|..+. .+++|++|+|++ +.+.. | ....+++|+.|+|+++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~--N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--CPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES--CTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC--CCCCccChHHHhCCCCCCEEECcCC
Confidence 4788888876542210 2888887 899999999999 54332 3 4678999999999999
Q ss_pred c-CCc-h---hhhhh---hhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceE
Q 044387 174 S-PEN-S---LTEKL---FCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLER 245 (446)
Q Consensus 174 ~-~~~-~---~l~~l---ls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~ 245 (446)
. +.+ . .+..+ +..+|+|+.|.+.+|....+.....+...++|+.|.+.++... . .. ..-..++|+.
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~----lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H----LE-AFGTNVKLTD 599 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-B----CC-CCCTTSEESE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-c----ch-hhcCCCcceE
Confidence 8 765 1 14333 3567899999999997642222000124578999999887432 1 11 1234578999
Q ss_pred EEeeecccCcE--EEecCCC-ceEEEEEEEeCccccCChhhHHHHHHhc--cCceEEEEEchhHHhhhcccccccC--cc
Q 044387 246 LHIMSDIFGKF--VVHDLNS-LTDVILDIVYGEWSRVDPNRAIQLLQRL--NNTKNLTVSYGVLCALDHAYHIWFP--AL 318 (446)
Q Consensus 246 L~l~~~~~~~~--~~~~~p~-L~~~~l~~~~~~~~~~~~~~~~~~l~~l--~~l~~L~l~~~~~~~~~~~~~~~~p--~~ 318 (446)
|.++++....+ .+..+++ |+.+.+....... +...+... ++++.|.++.+.+............ ..
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCc-------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99988755422 2556777 8888876543221 11223333 3488999887655321000011111 23
Q ss_pred ccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 319 SHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 319 ~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.+|+.|+++.+... ..-..++..+|+|+.|++..+.-
T Consensus 673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 47888888766543 12234566889999999887653
No 55
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.49 E-value=2.3e-09 Score=102.21 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHhc-cCceEEEEEchhHHhhhcc-cccccCc-cccceeEEEEeccc---chhHHHHHHhcCCCCcEEEEEecc
Q 044387 284 AIQLLQRL-NNTKNLTVSYGVLCALDHA-YHIWFPA-LSHLQHLEVAVGAI---GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 284 ~~~~l~~l-~~l~~L~l~~~~~~~~~~~-~~~~~p~-~~~L~~L~l~~~~~---~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+...+..+ ++++.|.++.+.+...... ....+.. .++|++|+++.+.. ....+..+++.+++|++|++..+.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 44555555 3777777776654331000 0111112 24677777766543 234555666777777777777765
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.49 E-value=7.6e-07 Score=89.64 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=107.3
Q ss_pred ccccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeE
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTK 207 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~ 207 (446)
...+|..++ ++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+- ....+.++++|+.|++++|...+...-.
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHH
Confidence 456776554 7899999999322 22334577899999999999988753 2245678999999999998754322111
Q ss_pred EEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHH
Q 044387 208 FVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQL 287 (446)
Q Consensus 208 ~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 287 (446)
+...++|+.|.+.++..... .. ...+.++++|+.+++....... ... ...
T Consensus 94 -~~~l~~L~~L~Ls~n~l~~~---~~---------------------~~~~~~l~~L~~L~L~~n~~~~-~~~----~~~ 143 (549)
T 2z81_A 94 -FGPLSSLKYLNLMGNPYQTL---GV---------------------TSLFPNLTNLQTLRIGNVETFS-EIR----RID 143 (549)
T ss_dssp -HTTCTTCCEEECTTCCCSSS---CS---------------------SCSCTTCTTCCEEEEEESSSCC-EEC----TTT
T ss_pred -hccCCCCcEEECCCCccccc---ch---------------------hhhhhccCCccEEECCCCcccc-ccC----Hhh
Confidence 02345677777666532110 00 0113344555555554322100 000 012
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+..+++++.|.++.+.+.. ..+..+..+++|++|++..+.... .-..+...+++|+.|++..+.
T Consensus 144 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRN---YQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTTCCEEEEEEEEETTCCE---ECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCB
T ss_pred hhcccccCeeeccCCcccc---cChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCc
Confidence 4556677777777654321 123344556677777776554321 112234567778887777755
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.48 E-value=6.9e-07 Score=89.34 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=41.9
Q ss_pred HhccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEeccc
Q 044387 289 QRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 289 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
..+++++.|.++.+.+.. ..+..+..+++|+.|+++.+.. ....++..+..+++|+.|++..+.-
T Consensus 321 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp SSCCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred hhCCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 345667777776654321 1133445677888888876655 3345667788888888888887653
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.48 E-value=1.4e-08 Score=95.60 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+..+++++.|.++.+.+..+ ....+..+++|++|+++.+... .++.-+..+|+|+.|++..+.
T Consensus 213 l~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMI---ENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCC---CTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCcC---ChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC
Confidence 34455666666655433221 1122344556666666544332 122224566777777776654
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.47 E-value=6e-08 Score=90.15 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=74.3
Q ss_pred hCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 114 RRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 114 ~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
..+++.|.+..+. ...++. +..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+- .. +..+|+|+.
T Consensus 62 l~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~~--n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSG--NPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSSC--CCCCGG-GTTCCSCCEEECCS--CCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCE
T ss_pred cCCCCEEEccCCc--CCCChh-HccCCCCCEEEccC--CcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCE
Confidence 3588988886643 234555 66799999999999 65554 4567899999999999998763 22 788999999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeec
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~ 224 (446)
|.+.+|...+... - ...++|+.|.+.+|.
T Consensus 134 L~l~~n~l~~~~~-l--~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 134 LYLDLNQITNISP-L--AGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECCSSCCCCCGG-G--GGCTTCCEEECCSSC
T ss_pred EECCCCccCcCcc-c--cCCCCccEEEccCCc
Confidence 9999997653322 1 345778888887773
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.46 E-value=3.1e-08 Score=97.35 Aligned_cols=203 Identities=13% Similarity=0.019 Sum_probs=107.7
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
..+++|.+..+.- ..+| +..+++|++|+|++ +.+..-....+++|++|+|+++.+.+-+ ++.++.|+.|.
T Consensus 85 ~~L~~L~Ls~N~l--~~~~--~~~l~~L~~L~L~~--N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~ 154 (457)
T 3bz5_A 85 TNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDT--NKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELD 154 (457)
T ss_dssp TTCSEEECCSSCC--SCCC--CTTCTTCCEEECCS--SCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEE
T ss_pred CCCCEEECcCCCC--ceee--cCCCCcCCEEECCC--CcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEE
Confidence 3566666544322 2222 34566777777776 4444333556677777777776665521 55667777777
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeC
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYG 274 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~ 274 (446)
+.+|... ..+. +...++|+.|.+..+...+- . ....++|++|.++++......+..+++|+.+++....-
T Consensus 155 l~~n~~~--~~~~-~~~l~~L~~L~ls~n~l~~l------~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 155 CHLNKKI--TKLD-VTPQTQLTTLDCSFNKITEL------D-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CTTCSCC--CCCC-CTTCTTCCEEECCSSCCCCC------C-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCC
T ss_pred CCCCCcc--cccc-cccCCcCCEEECCCCcccee------c-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcc
Confidence 7666321 1111 02346677777776632210 0 12346777777776655545566777777776654322
Q ss_pred ccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEE----------ecccchhHHHHHHhcCC
Q 044387 275 EWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVA----------VGAIGWAVLPVILSSSQ 344 (446)
Q Consensus 275 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~----------~~~~~~~~l~~lL~~~p 344 (446)
.. +. +..+++++.|.++.+.+..+ ....+++|+.|++. .+... ..++ ...|+
T Consensus 225 ~~-------ip--~~~l~~L~~L~l~~N~l~~~------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~-~~~~--~~~l~ 286 (457)
T 3bz5_A 225 TE-------ID--VTPLTQLTYFDCSVNPLTEL------DVSTLSKLTTLHCIQTDLLEIDLTHNTQL-IYFQ--AEGCR 286 (457)
T ss_dssp SC-------CC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECTTCCCSCCCCTTCTTC-CEEE--CTTCT
T ss_pred cc-------cC--ccccCCCCEEEeeCCcCCCc------CHHHCCCCCEEeccCCCCCEEECCCCccC-Cccc--ccccc
Confidence 11 11 45667777777776544321 12234444444332 21110 0001 24577
Q ss_pred CCcEEEEEecc
Q 044387 345 NLQSLILRKQS 355 (446)
Q Consensus 345 ~L~~L~i~~~~ 355 (446)
+|+.|++..+.
T Consensus 287 ~L~~L~Ls~n~ 297 (457)
T 3bz5_A 287 KIKELDVTHNT 297 (457)
T ss_dssp TCCCCCCTTCT
T ss_pred cCCEEECCCCc
Confidence 88888777665
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=100.36 Aligned_cols=257 Identities=14% Similarity=0.119 Sum_probs=138.1
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
.+++.|.+..+.- ..+ |..+..+++|++|+|++ +.+. +..+..+++|++|+|+++.+..-. ...+.++|.|
T Consensus 290 ~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L 364 (844)
T 3j0a_A 290 KDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSY--NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKL 364 (844)
T ss_dssp CCCCEEEEESCCC--CEECTTTTTTCSSCCEEEEES--CCCSCCCSCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCC
T ss_pred CCCCEEECCCCcC--CCCChHHhcCCCCCCEEECCC--CCCCccCHHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCC
Confidence 4788888876432 233 33445589999999999 5443 335678999999999998775432 2346778999
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccc--cceeE---------------EEecCCceEEEeeeccc
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQ--AEYKV---------------RITAPSLERLHIMSDIF 253 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~--~~~~~---------------~i~ap~L~~L~l~~~~~ 253 (446)
+.|.+.+|..... -..++|+.|.+..+....-... ....+ ....|+|++|.++++..
T Consensus 365 ~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 365 QTLDLRDNALTTI------HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp CEEEEETCCSCCC------SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred CEEECCCCCCCcc------cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 9999999875422 1256788888777632211000 00000 00345666666665433
Q ss_pred Cc----EEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEec
Q 044387 254 GK----FVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVG 329 (446)
Q Consensus 254 ~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~ 329 (446)
.. .....+++|+.+++............ .....+.++++++.|.++.+.+..+ ....+..+++|+.|+++.+
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETE-LCWDVFEGLSHLQVLYLNHNYLNSL---PPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC-CCSSCSSCBCCEECCCCCHHHHTTC---CTTSSSSCCSCSEEEEESC
T ss_pred cccccccccccCCccccccCCCCccccccccc-cchhhhcCcccccEEECCCCccccc---ChhHccchhhhheeECCCC
Confidence 21 11233556666655543221000000 0112245566677777766544421 2333455667777777655
Q ss_pred ccchhHHHHHHhcCCCCcEEEEEecccccccccccCcccccccCcccccceEEEEEEe--ecCChhHHHHHHHHH
Q 044387 330 AIGWAVLPVILSSSQNLQSLILRKQSRFEVTEEQFGWIEGDIVPNCLLQHVKKIEIKG--VEGDDDELILVDYLL 402 (446)
Q Consensus 330 ~~~~~~l~~lL~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~c~~~~L~~v~i~~--~~g~~~~~~l~~~ll 402 (446)
...... ...+ .++|+.|+++.+.-. ...+. ...+|+.+.+.+ +.+.+.-..|..++-
T Consensus 515 ~l~~l~-~~~~--~~~L~~L~Ls~N~l~------------~~~~~-~~~~L~~l~l~~Np~~C~c~~~~f~~~~~ 573 (844)
T 3j0a_A 515 RLTVLS-HNDL--PANLEILDISRNQLL------------APNPD-VFVSLSVLDITHNKFICECELSTFINWLN 573 (844)
T ss_dssp CCSSCC-CCCC--CSCCCEEEEEEECCC------------CCCSC-CCSSCCEEEEEEECCCCSSSCCSHHHHHH
T ss_pred CCCccC-hhhh--hccccEEECCCCcCC------------CCChh-HhCCcCEEEecCCCcccccccHHHHHHHH
Confidence 431100 0001 167777777776531 01111 234788888876 666544445555553
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=6.2e-09 Score=103.32 Aligned_cols=193 Identities=10% Similarity=0.025 Sum_probs=94.8
Q ss_pred cccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcc
Q 044387 137 YTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 137 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 216 (446)
..+++|++|+|++ +.+.... ..++|++|+|+++.+.+-. ...+|.|+.|.+.+|...+.....+ ...++|+
T Consensus 77 ~~l~~L~~L~Ls~--N~l~~l~--~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~ 147 (487)
T 3oja_A 77 ESLSTLRTLDLNN--NYVQELL--VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQ 147 (487)
T ss_dssp TTCTTCCEEECCS--SEEEEEE--ECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEE
T ss_pred ccCCCCCEEEecC--CcCCCCC--CCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhh-cCCCCCC
Confidence 3455555555555 3222110 1255666666555554432 1234666666666665432222110 1235566
Q ss_pred eEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE-EecCCCceEEEEEEEeCccccCChhhHHHHHHhccCce
Q 044387 217 RCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV-VHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTK 295 (446)
Q Consensus 217 ~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~ 295 (446)
.|.+.++...+.. ...+.-..++|++|+++++...... ...+++|+.+++...... +..+ -+..+++++
T Consensus 148 ~L~Ls~N~l~~~~---~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~-----~~~~l~~L~ 217 (487)
T 3oja_A 148 YLDLKLNEIDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--FMGP-----EFQSAAGVT 217 (487)
T ss_dssp EEECTTSCCCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC--EECG-----GGGGGTTCS
T ss_pred EEECCCCCCCCcC---hHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCC--CCCH-----hHcCCCCcc
Confidence 6666655322100 0000012466777777665544221 234667776666543221 1111 145667777
Q ss_pred EEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEE
Q 044387 296 NLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILR 352 (446)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~ 352 (446)
.|.++.+.+..+ +..+..+++|+.|+++.+......++..+..+|.|+.|.+.
T Consensus 218 ~L~Ls~N~l~~l----p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVLI----EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCEE----CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCccc----chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777766544321 22344556677777765544444566667777777766654
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.46 E-value=7.1e-07 Score=90.20 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=39.1
Q ss_pred HhccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc-chhHHHHHHhcCCCCcEEEEEecc
Q 044387 289 QRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI-GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 289 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~-~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
..+++++.|.++.+.+.. ..+..+..+++|+.|+++.+.. ....++..+..+++|+.|++..+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 345566666666543321 1133345667788888876654 333555667788888888887655
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.45 E-value=5.5e-07 Score=91.87 Aligned_cols=203 Identities=14% Similarity=0.080 Sum_probs=97.9
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceE
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRC 218 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 218 (446)
++|++|+|+++.. .+.+..+..+++|++|+|+++.+.+- ....+.+++.|+.|++++|...+...-. +-..++|+.|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEE
Confidence 4455555555211 12222344555555555555544331 1122344555555555554432211101 0123445555
Q ss_pred EEeeecccccccccceeEEEecCCceEEEeeecccC----cEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccC-
Q 044387 219 TLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG----KFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNN- 293 (446)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~- 293 (446)
.+.+|...... ....-..++|++|.++++... ...+.++++|+++++....... ..+. ...-+..++.
T Consensus 110 ~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~-~~~~l~~L~~~ 182 (606)
T 3vq2_A 110 VAVETKLASLE----SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT--ITVN-DLQFLRENPQV 182 (606)
T ss_dssp ECTTSCCCCSS----SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE--ECTT-TTHHHHHCTTC
T ss_pred EccCCcccccc----ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee--cChh-hhhhhhccccc
Confidence 55544221100 000122355666666554332 1124567777777665432211 1111 1112333332
Q ss_pred ceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 294 TKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 294 l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
+..|.++.+.+..+ ....+.. .+|+.|+++.+......+...+..+++|+.+.+....
T Consensus 183 l~~L~l~~n~l~~~---~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 183 NLSLDMSLNPIDFI---QDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp CCEEECTTCCCCEE---CTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred cceeeccCCCccee---CcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 45777776554322 1122222 3799999988776667788889999999999987654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.45 E-value=3.9e-09 Score=98.43 Aligned_cols=83 Identities=18% Similarity=0.036 Sum_probs=47.5
Q ss_pred ccCcccEEEEeceeEeecC--CC-C--ccCCcccEEEeeeecCCchh--hhhhhh-cCCccceeEEEeecCCCCCCeEEE
Q 044387 138 TSVSVEVLKLMSDFVIKVP--AG-G--TSFPNVKILSVQLESPENSL--TEKLFC-SCPALEELSIQAYLNDEGPTTKFV 209 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~--~~-~--~~~~~L~~L~L~~~~~~~~~--l~~lls-~cp~Le~L~l~~~~~~~~~~~~~~ 209 (446)
.+++|++|+|++ +.+.. |. . ..+++|++|+|+++.+.+.. +..+.. .++.|+.|+++++...+...-. +
T Consensus 93 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~ 169 (312)
T 1wwl_A 93 GISGLQELTLEN--LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-V 169 (312)
T ss_dssp TTSCCCEEEEEE--EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-C
T ss_pred CcCCccEEEccC--CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-h
Confidence 467788888887 55442 22 2 56778888888887776542 222211 1377888888877654322111 0
Q ss_pred eecCCcceEEEeee
Q 044387 210 ISSSTLKRCTLWVA 223 (446)
Q Consensus 210 i~~~~L~~L~l~~~ 223 (446)
...++|+.|.+.++
T Consensus 170 ~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 170 RVFPALSTLDLSDN 183 (312)
T ss_dssp CCCSSCCEEECCSC
T ss_pred ccCCCCCEEECCCC
Confidence 23455666666655
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.43 E-value=2.2e-07 Score=92.94 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=19.2
Q ss_pred CccccceeEEEEecccchhHHHHHHh--cCCCCcEEEEEecc
Q 044387 316 PALSHLQHLEVAVGAIGWAVLPVILS--SSQNLQSLILRKQS 355 (446)
Q Consensus 316 p~~~~L~~L~l~~~~~~~~~l~~lL~--~~p~L~~L~i~~~~ 355 (446)
..+++|++|++..+......+..+.. .+++|+.|++..+.
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 34456666666554433322222222 24566666666544
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.42 E-value=6.8e-08 Score=87.95 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=49.6
Q ss_pred cccCCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
..+|..+. ++|++|+|++ +.+.. ..+..+++|++|+|+++.+..- -...+.+++.|+.|.+.++.......-
T Consensus 29 ~~ip~~~~--~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQS--NKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp SSCCSCCC--TTCSEEECCS--SCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCC--CCCCEEECcC--CCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 34554332 5678888877 43332 2456778888888877766532 233456678888888877754322110
Q ss_pred EEEeecCCcceEEEeee
Q 044387 207 KFVISSSTLKRCTLWVA 223 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~ 223 (446)
. +...++|+.|.+..+
T Consensus 104 ~-~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 104 V-FDQLVNLAELRLDRN 119 (270)
T ss_dssp T-TTTCSSCCEEECCSS
T ss_pred H-cccccCCCEEECCCC
Confidence 0 012345555555554
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.42 E-value=2.1e-08 Score=102.99 Aligned_cols=227 Identities=13% Similarity=0.074 Sum_probs=141.1
Q ss_pred CCceEEEEEecCCCccccCC--cccccCcccEEEEeceeEeec--CCCCccCCcccEEEeeeecCCchhhhhhhhcCCc-
Q 044387 115 RNAREIELYLDQNHRVELPE--ELYTSVSVEVLKLMSDFVIKV--PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPA- 189 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~- 189 (446)
..+++|.+..+.- ..+|. .+..+++|++|+|++ +.+. .|....+++|++|+|+++.+. .+..-+..++.
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~--N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~ 378 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLY--NQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQ 378 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCS--CCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTT
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcC--CcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhccc
Confidence 6889888876543 37888 778899999999998 4333 346778899999999998776 34444778888
Q ss_pred cceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccce---eEEEecCCceEEEeeecccCcEE---EecCCC
Q 044387 190 LEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEY---KVRITAPSLERLHIMSDIFGKFV---VHDLNS 263 (446)
Q Consensus 190 Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~---~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~ 263 (446)
|+.|++.++....+...-.....++|+.|.+..+...+....... .-....++|++|.++++....+. +..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 999999998764332211001234799999988854321100000 11124568889988886554322 235788
Q ss_pred ceEEEEEEEeCccccCChhhHH---HHHHhccCceEEEEEchhHHhhhcccccccC--ccccceeEEEEecccchhHHHH
Q 044387 264 LTDVILDIVYGEWSRVDPNRAI---QLLQRLNNTKNLTVSYGVLCALDHAYHIWFP--ALSHLQHLEVAVGAIGWAVLPV 338 (446)
Q Consensus 264 L~~~~l~~~~~~~~~~~~~~~~---~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p--~~~~L~~L~l~~~~~~~~~l~~ 338 (446)
|+.+++....... .....+. ..++.+++++.|.++.+.+..+ +..+. .+++|++|+++.+.... ++.
T Consensus 459 L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~~~l~~L~~L~Ls~N~l~~--ip~ 530 (636)
T 4eco_A 459 LSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNKLTKL----SDDFRATTLPYLVGIDLSYNSFSK--FPT 530 (636)
T ss_dssp CSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSCCCBC----CGGGSTTTCTTCCEEECCSSCCSS--CCC
T ss_pred CCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCCcCCcc----ChhhhhccCCCcCEEECCCCCCCC--cCh
Confidence 8888876533221 1110000 0012334888888887655422 22333 66788888887665432 344
Q ss_pred HHhcCCCCcEEEEEecc
Q 044387 339 ILSSSQNLQSLILRKQS 355 (446)
Q Consensus 339 lL~~~p~L~~L~i~~~~ 355 (446)
-+..+++|+.|++..+.
T Consensus 531 ~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp GGGGCSSCCEEECCSCB
T ss_pred hhhcCCCCCEEECCCCc
Confidence 45678888988886543
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.41 E-value=1.1e-07 Score=87.35 Aligned_cols=198 Identities=16% Similarity=0.076 Sum_probs=108.8
Q ss_pred CceEEEEEecCCCccccCCc-ccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeec-CCchhhhhhhhcCCccce
Q 044387 116 NAREIELYLDQNHRVELPEE-LYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLES-PENSLTEKLFCSCPALEE 192 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~ 192 (446)
.+++|.+.... ...++.. +..+++|++|+|+++.. .+.+..+..+++|++|+|+++. +..- ....+..++.|+.
T Consensus 33 ~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred CceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence 55655554322 2234432 33477777777777321 2223345667777777777775 3332 1334566777777
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE---EecCCCceEEEE
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVIL 269 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l 269 (446)
|.+.++...+...-. +...++|+.|.+.++....... ...-..++|++|++++.....+. +..+++|+.+++
T Consensus 110 L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 110 LHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp EECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 777777543221111 0234667777777663221100 00112467888887776544322 456778888777
Q ss_pred EEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecc
Q 044387 270 DIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGA 330 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 330 (446)
....... .. ...+..+++++.|.++.+.+..+ ....+..+++|++|+++.+.
T Consensus 185 ~~n~l~~--~~----~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 185 HQNRVAH--VH----PHAFRDLGRLMTLYLFANNLSAL---PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCCE--EC----TTTTTTCTTCCEEECCSSCCSCC---CHHHHTTCTTCCEEECCSSC
T ss_pred CCCcccc--cC----HhHccCcccccEeeCCCCcCCcC---CHHHcccCcccCEEeccCCC
Confidence 5432211 11 12356778999999987654421 12234466789999987543
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.41 E-value=7e-08 Score=88.94 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=28.1
Q ss_pred cCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
+++|+.|++++ +.+.. ++...+++|++|+|+++.+.+-. . ++.+++|+.|.+.++..
T Consensus 45 l~~L~~L~l~~--~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 45 LNSIDQIIANN--SDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTCCEEECTT--SCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC
T ss_pred cCcccEEEccC--CCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC
Confidence 44555555555 33322 33444555555555555554421 1 45555555555555543
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.41 E-value=2.5e-07 Score=79.86 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=35.4
Q ss_pred ccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 138 TSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
.+++|++|++++ +.+.. ++...+++|++|+|+++.+.+- ..++.+|.|+.|.+.+|..
T Consensus 42 ~l~~L~~L~l~~--n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 42 QMNSLTYITLAN--INVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHTCCEEEEES--SCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTC
T ss_pred hcCCccEEeccC--CCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCcc
Confidence 356677777776 44433 4555667777777777654432 1355677777777776653
No 72
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.40 E-value=6.9e-08 Score=101.41 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred cCCcccc-cCcccEEEEeceeEe-ecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 132 LPEELYT-SVSVEVLKLMSDFVI-KVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 132 lp~~l~~-~~~L~~L~L~~~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
+|..++. |++|++|+|+++... ..+.....+++|++|+|+++.+.+.--...+..++.|+.|++.+|.
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 4444444 355666666652111 1112344566666666666555432212234556666666666654
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.39 E-value=2.1e-08 Score=95.50 Aligned_cols=191 Identities=10% Similarity=0.060 Sum_probs=87.5
Q ss_pred CcccEEEeeeecCCchh---hhhhhhcC-CccceeEEEeecCCCCCCeEE--Ee-e-cCCcceEEEeeecccccccccce
Q 044387 163 PNVKILSVQLESPENSL---TEKLFCSC-PALEELSIQAYLNDEGPTTKF--VI-S-SSTLKRCTLWVATEGEMFTQAEY 234 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~---l~~lls~c-p~Le~L~l~~~~~~~~~~~~~--~i-~-~~~L~~L~l~~~~~~~~~~~~~~ 234 (446)
++|++|+|+++.+.+.. +...+..+ +.|+.|++.+|...+...-.+ .+ . ..+|+.|.+.+|...........
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 55666666666554332 34444444 566666666554321111000 00 0 23566666655532210000000
Q ss_pred eEEEec-CCceEEEeeecccCcE-------EEecC-CCceEEEEEEEeCccccCChhhHHHHHHh-ccCceEEEEEchhH
Q 044387 235 KVRITA-PSLERLHIMSDIFGKF-------VVHDL-NSLTDVILDIVYGEWSRVDPNRAIQLLQR-LNNTKNLTVSYGVL 304 (446)
Q Consensus 235 ~~~i~a-p~L~~L~l~~~~~~~~-------~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~l~~~~~ 304 (446)
...... ++|++|.++++..... .+... ++|+.+++....... .....+...+.. .++++.|.++.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL--KSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh--hHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 000111 2666666665433211 11233 367666665432211 111114444555 35899999887654
Q ss_pred Hhhhccc-ccccCccccceeEEEEecc---cchhHHHHHHhcCCC---CcEEEEEecc
Q 044387 305 CALDHAY-HIWFPALSHLQHLEVAVGA---IGWAVLPVILSSSQN---LQSLILRKQS 355 (446)
Q Consensus 305 ~~~~~~~-~~~~p~~~~L~~L~l~~~~---~~~~~l~~lL~~~p~---L~~L~i~~~~ 355 (446)
....... ...+..+++|++|+++.+. .....+..+...+++ |+.|+++.+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3211111 2234456789999998765 344555555555554 4444444433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.39 E-value=3.9e-08 Score=89.88 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=85.0
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceE
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRC 218 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L 218 (446)
++|++|+|+++.. .+....+..+++|++|+|+++.+..-. ...+.+++.|+.|++.++...+...-. +...++|+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh-hcCCccccEE
Confidence 3566666665211 112223445566666666665554321 123445566666666655432111000 0123455555
Q ss_pred EEeeecccccccccceeEEEecCCceEEEeeecccCc----EEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCc
Q 044387 219 TLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNT 294 (446)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l 294 (446)
.+..+...... .......++|++|.+++..... ..+..+++|+.+++...... ...+. ...-+..++.+
T Consensus 106 ~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~--~~~~~-~~~~l~~L~~l 178 (276)
T 2z62_A 106 VAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--SIYCT-DLRVLHQMPLL 178 (276)
T ss_dssp ECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--EECGG-GGHHHHTCTTC
T ss_pred ECCCCCccccC----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC--cCCHH-Hhhhhhhcccc
Confidence 55544211100 0001123556666655543321 12344566666655432211 11111 01112233333
Q ss_pred e-EEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 295 K-NLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 295 ~-~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
. .|.++.+.+..+ ........+|++|+++.+.... ....++..+++|++|++..+.
T Consensus 179 ~l~L~ls~n~l~~~----~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 179 NLSLDLSLNPMNFI----QPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEECCSSCCCEE----CTTSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSC
T ss_pred ceeeecCCCccccc----CccccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCc
Confidence 2 566655443321 1111122367777776544311 111234667777777776655
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.38 E-value=3.9e-07 Score=92.10 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred cCCceEEEeeecccCc---EEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccC
Q 044387 240 APSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFP 316 (446)
Q Consensus 240 ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p 316 (446)
.++|++|.+++..... ..+..+++|+.+++...... .... ....+..+++++.|.++.+.+.. ......+.
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~--~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~ 425 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFK--VALMTKNMSSLETLDVSLNSLNS--HAYDRTCA 425 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC--BTTH--HHHTTTTCTTCCEEECTTSCCBS--CCSSCCCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC--Cccc--chhhhcCCCCCCEEECCCCcCCC--ccChhhhc
Confidence 3556666666543321 12355666666666432211 1111 34456677888888887665432 01112234
Q ss_pred ccccceeEEEEecccchhHHHHHHhcC-CCCcEEEEEecc
Q 044387 317 ALSHLQHLEVAVGAIGWAVLPVILSSS-QNLQSLILRKQS 355 (446)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~l~~lL~~~-p~L~~L~i~~~~ 355 (446)
.+++|++|+++.+..... +.... ++|+.|+++.+.
T Consensus 426 ~l~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~ 461 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNR 461 (562)
T ss_dssp CCTTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSC
T ss_pred CcccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCc
Confidence 456777777765543221 12223 577777777654
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.37 E-value=2.2e-08 Score=93.38 Aligned_cols=208 Identities=14% Similarity=0.017 Sum_probs=119.3
Q ss_pred ccCCcccccCcccEEEEeceeE-eecCCCCc--------cCCcccEEEeeeecCCchhhhhh-hhcCCccceeEEEeecC
Q 044387 131 ELPEELYTSVSVEVLKLMSDFV-IKVPAGGT--------SFPNVKILSVQLESPENSLTEKL-FCSCPALEELSIQAYLN 200 (446)
Q Consensus 131 ~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~--------~~~~L~~L~L~~~~~~~~~l~~l-ls~cp~Le~L~l~~~~~ 200 (446)
.+|..+... |+.|+|+++.. ....+... .+++|++|+|+++.+.+..-..+ +..++.|+.|+++++..
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 446545544 88888887322 22233322 58999999999998875432222 47899999999999876
Q ss_pred CCCCCeEEEeec-----CCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC-------cEEEecCCCceEEE
Q 044387 201 DEGPTTKFVISS-----STLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG-------KFVVHDLNSLTDVI 268 (446)
Q Consensus 201 ~~~~~~~~~i~~-----~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-------~~~~~~~p~L~~~~ 268 (446)
.+....- ... ++|+.|.+.++....... ...-..++|++|+++++... ...+..+++|++++
T Consensus 134 ~~~~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 207 (312)
T 1wwl_A 134 ATRDAWL--AELQQWLKPGLKVLSIAQAHSLNFSC----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207 (312)
T ss_dssp SSSSSHH--HHHHTTCCTTCCEEEEESCSCCCCCT----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEE
T ss_pred cchhHHH--HHHHHhhcCCCcEEEeeCCCCccchH----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEE
Confidence 5331100 122 789999999884332110 11124678899988876532 11226778888887
Q ss_pred EEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcE
Q 044387 269 LDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQS 348 (446)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~ 348 (446)
+....... . +.....++..+++++.|.++.+.+.... ....+..+++|++|+++.+... .++.-+. ++|+.
T Consensus 208 L~~N~l~~--~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 208 LRNAGMET--P-SGVCSALAAARVQLQGLDLSHNSLRDAA--GAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSV 278 (312)
T ss_dssp CTTSCCCC--H-HHHHHHHHHTTCCCSEEECTTSCCCSSC--CCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEE
T ss_pred CCCCcCcc--h-HHHHHHHHhcCCCCCEEECCCCcCCccc--chhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceE
Confidence 75432210 0 1112345566788888888776543211 0122233467777777654432 1111111 67777
Q ss_pred EEEEecc
Q 044387 349 LILRKQS 355 (446)
Q Consensus 349 L~i~~~~ 355 (446)
|+++.+.
T Consensus 279 L~Ls~N~ 285 (312)
T 1wwl_A 279 LDLSYNR 285 (312)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 7777655
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.34 E-value=4.3e-08 Score=92.15 Aligned_cols=218 Identities=10% Similarity=0.033 Sum_probs=133.3
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++.|.+..+.- ..+ |..+..+++|++|+|++ +.+..-+...+++|++|+|+++.+..- ....+.+++.|+.|
T Consensus 78 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~--n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 78 QHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISK--NHLVEIPPNLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCI 152 (332)
T ss_dssp TTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCS--SCCCSCCSSCCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEE
T ss_pred CCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCC--CcCCccCccccccCCEEECCCCccCcc-CHhHhCCCccCCEE
Confidence 4678887765332 233 44555689999999998 555432222348999999999887643 23456789999999
Q ss_pred EEEeecCCC--CCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE---EEecCCCceEEE
Q 044387 194 SIQAYLNDE--GPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVI 268 (446)
Q Consensus 194 ~l~~~~~~~--~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~ 268 (446)
.+.++.... ..... +...+|+.|.+..+....- ... -.++|++|.+++...... .+..+++|+.++
T Consensus 153 ~l~~n~l~~~~~~~~~--~~~l~L~~L~l~~n~l~~l-~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGA--FDGLKLNYLRISEAKLTGI-PKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp ECCSCCCBGGGSCTTS--SCSCCCSCCBCCSSBCSSC-CSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred ECCCCccccCCCCccc--ccCCccCEEECcCCCCCcc-Ccc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 999886521 11111 2222788888887743221 000 126888888887654432 356778888887
Q ss_pred EEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccch---hHHHH--HHhcC
Q 044387 269 LDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGW---AVLPV--ILSSS 343 (446)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~---~~l~~--lL~~~ 343 (446)
+...... ...+ ..+..+++++.|.++.+.+..+ +..+..+++|++|+++.+.... ..+.. +....
T Consensus 224 L~~N~l~--~~~~----~~~~~l~~L~~L~L~~N~l~~l----p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 224 LGHNQIR--MIEN----GSLSFLPTLRELHLDNNKLSRV----PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp CCSSCCC--CCCT----TGGGGCTTCCEEECCSSCCCBC----CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred CCCCcCC--cCCh----hHhhCCCCCCEEECCCCcCeec----ChhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence 7643221 1221 2367788999999987755422 3345567788999987654321 11111 01125
Q ss_pred CCCcEEEEEeccc
Q 044387 344 QNLQSLILRKQSR 356 (446)
Q Consensus 344 p~L~~L~i~~~~~ 356 (446)
+.|+.|.+..++.
T Consensus 294 ~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 294 AYYNGISLFNNPV 306 (332)
T ss_dssp CCBSEEECCSSSS
T ss_pred ccccceEeecCcc
Confidence 7788888887663
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.34 E-value=6.3e-08 Score=98.29 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=70.7
Q ss_pred cCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcce
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKR 217 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~ 217 (446)
+++|+.|.|.+ +.+.. +....+++|+.|+|+++.+.+-. . +..++.|+.|.|.+|...++..+ ...++|+.
T Consensus 42 L~~L~~L~l~~--n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l---~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANN--SDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSL---KDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTT--CCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTS---TTCTTCCE
T ss_pred CCCCCEEECcC--CCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhh---ccCCCCCE
Confidence 34455555554 33322 23444555555555555444321 1 44555555555555543322210 12344555
Q ss_pred EEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceE
Q 044387 218 CTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKN 296 (446)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~ 296 (446)
|.+..|....- .-....|+|+.|.++++....+ .+..+++|+.+.+...... .. .. +..+++|+.
T Consensus 114 L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~--~~-----~~-l~~l~~L~~ 179 (605)
T 1m9s_A 114 LSLEHNGISDI------NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DI-----VP-LAGLTKLQN 179 (605)
T ss_dssp EECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC--CC-----GG-GTTCTTCCE
T ss_pred EEecCCCCCCC------ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC--Cc-----hh-hccCCCCCE
Confidence 55544421110 0011235555555555433211 2345566666655432211 11 11 455566666
Q ss_pred EEEEchhHHhhhcccccccCccccceeEEEEec
Q 044387 297 LTVSYGVLCALDHAYHIWFPALSHLQHLEVAVG 329 (446)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~ 329 (446)
|.|+.+.+..+ ..+..+++|+.|+|+.+
T Consensus 180 L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 180 LYLSKNHISDL-----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCBC-----GGGTTCTTCSEEECCSE
T ss_pred EECcCCCCCCC-----hHHccCCCCCEEEccCC
Confidence 66655433221 12334455566655443
No 79
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=3.5e-07 Score=86.59 Aligned_cols=59 Identities=19% Similarity=0.089 Sum_probs=38.8
Q ss_pred cCCcccEEEeeeecCC--------chhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 161 SFPNVKILSVQLESPE--------NSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~--------~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
.|++|+.|.+..+... ..++..++..+|.|++|.|.++... .... +..++|++|.+..|
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l--~l~~--~~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL--SIGK--KPRPNLKSLEIISG 203 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC--BCCS--CBCTTCSEEEEECS
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc--eecc--ccCCCCcEEEEecC
Confidence 4556666666544321 1237788999999999999987432 2222 44678888888766
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.31 E-value=1.7e-08 Score=94.36 Aligned_cols=215 Identities=11% Similarity=0.031 Sum_probs=121.7
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
..++.|.+..+.- ...+. +..+++|++|+|++ +.+..- ...++|++|+++++.+.+.. ...++.|+.|.
T Consensus 58 ~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~Ls~--n~l~~l--~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~ 126 (317)
T 3o53_A 58 TKLELLNLSSNVL--YETLD-LESLSTLRTLDLNN--NYVQEL--LVGPSIETLHAANNNISRVS----CSRGQGKKNIY 126 (317)
T ss_dssp TTCCEEECTTSCC--EEEEE-ETTCTTCCEEECCS--SEEEEE--EECTTCCEEECCSSCCSEEE----ECCCSSCEEEE
T ss_pred CcCCEEECCCCcC--Ccchh-hhhcCCCCEEECcC--Cccccc--cCCCCcCEEECCCCccCCcC----ccccCCCCEEE
Confidence 3566666643221 12222 34467777777776 333211 12367777777776665533 22357777777
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE-EecCCCceEEEEEEEe
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV-VHDLNSLTDVILDIVY 273 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-~~~~p~L~~~~l~~~~ 273 (446)
+.++...+.....+ ...++|+.|.+.++...... ...+.-..++|++|.++++...... ...+++|+.+++....
T Consensus 127 l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 127 LANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC
T ss_pred CCCCCCCCccchhh-hccCCCCEEECCCCCCCccc---HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCc
Confidence 77776543222120 23466777777766322100 0000112477888888776554332 2347788887775432
Q ss_pred CccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEe
Q 044387 274 GEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
.. ...+ .+..+++++.|.++.+.+..+ +..+..+++|++|+++.+......+...+..+|+|+.|.+..
T Consensus 203 l~--~l~~-----~~~~l~~L~~L~L~~N~l~~l----~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 203 LA--FMGP-----EFQSAAGVTWISLRNNKLVLI----EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CC--EECG-----GGGGGTTCSEEECTTSCCCEE----CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CC--cchh-----hhcccCcccEEECcCCcccch----hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 21 1111 256778888888887655432 334456678888888766655457777888888888887775
Q ss_pred cc
Q 044387 354 QS 355 (446)
Q Consensus 354 ~~ 355 (446)
..
T Consensus 272 ~~ 273 (317)
T 3o53_A 272 VK 273 (317)
T ss_dssp HH
T ss_pred ch
Confidence 44
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.29 E-value=7.8e-08 Score=87.69 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=79.2
Q ss_pred ccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCC
Q 044387 136 LYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSST 214 (446)
Q Consensus 136 l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~ 214 (446)
+..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+- ....+.+++.|+.|.+.+|...+...-. +-..++
T Consensus 59 l~~l~~L~~L~l~~--n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 134 (272)
T 3rfs_A 59 IQYLPNVRYLALGG--NKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLTN 134 (272)
T ss_dssp GGGCTTCCEEECTT--SCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTT
T ss_pred cccCCCCcEEECCC--CCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHH-hccCCC
Confidence 34456666666665 33332 2344556666666666555432 1223445566666666655432111100 011234
Q ss_pred cceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE---EecCCCceEEEEEEEeCccccCChhhHHHHHHhc
Q 044387 215 LKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRL 291 (446)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l 291 (446)
|+.|.+.+| ...... +..+++|+.+++...... ... ...+..+
T Consensus 135 L~~L~L~~n----------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~----~~~~~~l 180 (272)
T 3rfs_A 135 LTYLNLAHN----------------------------QLQSLPKGVFDKLTNLTELDLSYNQLQ--SLP----EGVFDKL 180 (272)
T ss_dssp CCEEECCSS----------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC--CCC----TTTTTTC
T ss_pred CCEEECCCC----------------------------ccCccCHHHhccCccCCEEECCCCCcC--ccC----HHHhcCC
Confidence 444444443 222111 234455555544332111 111 1224566
Q ss_pred cCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 292 NNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 292 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
++++.|.++.+.+..+ ....+..+++|++|++..+... ..||+|+.|.+..+.
T Consensus 181 ~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSV---PDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHH
T ss_pred ccCCEEECCCCcCCcc---CHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHh
Confidence 7777777776544321 1223445667777777654321 236666666555443
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.25 E-value=2.9e-07 Score=93.61 Aligned_cols=223 Identities=17% Similarity=0.070 Sum_probs=110.4
Q ss_pred cceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccE
Q 044387 88 NITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKI 167 (446)
Q Consensus 88 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~ 167 (446)
.++.+.+.... ...+.. ...+++.|.+..+. ...+|. ..++|++|+|++ +.+..-.. .+++|++
T Consensus 62 ~L~~L~L~~N~---l~~lp~-----~l~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~--N~l~~l~~-~l~~L~~ 125 (622)
T 3g06_A 62 HITTLVIPDNN---LTSLPA-----LPPELRTLEVSGNQ--LTSLPV---LPPGLLELSIFS--NPLTHLPA-LPSGLCK 125 (622)
T ss_dssp TCSEEEECSCC---CSCCCC-----CCTTCCEEEECSCC--CSCCCC---CCTTCCEEEECS--CCCCCCCC-CCTTCCE
T ss_pred CCcEEEecCCC---CCCCCC-----cCCCCCEEEcCCCc--CCcCCC---CCCCCCEEECcC--CcCCCCCC-CCCCcCE
Confidence 57777776541 111211 12477877776543 234555 467888888887 54443111 5677777
Q ss_pred EEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeeccccccc------------cccee
Q 044387 168 LSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFT------------QAEYK 235 (446)
Q Consensus 168 L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~------------~~~~~ 235 (446)
|+|+++.+..- -...|+|+.|++++|...++ . -..++|+.|.+.++....-.. +....
T Consensus 126 L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~l~~l---~--~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 126 LWIFGNQLTSL-----PVLPPGLQELSVSDNQLASL---P--ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp EECCSSCCSCC-----CCCCTTCCEEECCSSCCSCC---C--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred EECCCCCCCcC-----CCCCCCCCEEECcCCcCCCc---C--CccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence 77777765441 12247777777777654321 1 112344444444442110000 00001
Q ss_pred EEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccccccc
Q 044387 236 VRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWF 315 (446)
Q Consensus 236 ~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 315 (446)
+....++|+.|.+.++....+. ..+++|+.+++...... .+...+++++.|.++.+.+..+ +.
T Consensus 196 l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L~----------~lp~~l~~L~~L~Ls~N~L~~l----p~-- 258 (622)
T 3g06_A 196 LPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLT----------SLPVLPSELKELMVSGNRLTSL----PM-- 258 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCS----------CCCCCCTTCCEEECCSSCCSCC----CC--
T ss_pred CCCccchhhEEECcCCcccccC-CCCCCCCEEEccCCccC----------cCCCCCCcCcEEECCCCCCCcC----Cc--
Confidence 1111245555555443332111 12355555555432111 1113345677777766543321 11
Q ss_pred CccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 316 PALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 316 p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
.+++|++|+++.+... .++.-+..+|+|+.|+|..+.-
T Consensus 259 -~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCC
T ss_pred -ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCC
Confidence 3467777777665443 2334467788888888877663
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.23 E-value=5.6e-08 Score=100.67 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=104.8
Q ss_pred CCceEEEEEecCCCccccCCc-ccccCcccEEEEeceeE---eecCCCCc--cCCcccEEEeeeecCCchhhhhhhhcCC
Q 044387 115 RNAREIELYLDQNHRVELPEE-LYTSVSVEVLKLMSDFV---IKVPAGGT--SFPNVKILSVQLESPENSLTEKLFCSCP 188 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~---~l~~~~~~--~~~~L~~L~L~~~~~~~~~l~~lls~cp 188 (446)
.+++++.+..+. ...++.. +..+++|++|+|+++.. .++...+. ..++|+.|+|+++.+.+-. ...+.+++
T Consensus 329 ~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~ 405 (680)
T 1ziw_A 329 KCLEHLNMEDND--IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLG 405 (680)
T ss_dssp TTCCEEECCSCC--BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-TTTTTTCT
T ss_pred CCCCEEECCCCc--cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-hhhhhCCC
Confidence 477877775432 2233333 34588888888887311 11111122 2256777777777665431 23355677
Q ss_pred ccceeEEEeecCCC-CCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC-----cEEEecCC
Q 044387 189 ALEELSIQAYLNDE-GPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG-----KFVVHDLN 262 (446)
Q Consensus 189 ~Le~L~l~~~~~~~-~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-----~~~~~~~p 262 (446)
.|+.|++.++...+ ..... +...++|+.|.+..|....... ......|+|++|.+.+.... ...+.+++
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQE-WRGLENIFEIYLSYNKYLQLTR----NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TCCEEECCSSCCEEECCSGG-GTTCTTCCEEECCSCSEEECCT----TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred CCCEEeCCCCcCccccCccc-ccCcccccEEecCCCCcceeCh----hhhhcCcccccchhccccccccccCCcccccCC
Confidence 77777777665321 00000 0134566777766652111000 00012466666666553321 12234556
Q ss_pred CceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccc-----ccccCccccceeEEEEecccchhHHH
Q 044387 263 SLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAY-----HIWFPALSHLQHLEVAVGAIGWAVLP 337 (446)
Q Consensus 263 ~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-----~~~~p~~~~L~~L~l~~~~~~~~~l~ 337 (446)
+|+.+++....-. ...+ ..+.++++++.|.++.+.+..+.... ...+..+++|+.|+++.+... .+.
T Consensus 481 ~L~~L~Ls~N~l~--~i~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~ 552 (680)
T 1ziw_A 481 NLTILDLSNNNIA--NIND----DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIP 552 (680)
T ss_dssp TCCEEECCSSCCC--CCCT----TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCC
T ss_pred CCCEEECCCCCCC--cCCh----hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCC
Confidence 6666665432211 1111 12455566666666655443321111 011234455556655543321 111
Q ss_pred -HHHhcCCCCcEEEEEecc
Q 044387 338 -VILSSSQNLQSLILRKQS 355 (446)
Q Consensus 338 -~lL~~~p~L~~L~i~~~~ 355 (446)
..+..+++|+.|++..+.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHcccccCcceeECCCCC
Confidence 124555666666665443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.23 E-value=4.9e-08 Score=90.85 Aligned_cols=41 Identities=20% Similarity=0.007 Sum_probs=19.8
Q ss_pred ccCCcccEEEeeeecCCchh--h-hhhhhcCCccceeEEEeecC
Q 044387 160 TSFPNVKILSVQLESPENSL--T-EKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~--l-~~lls~cp~Le~L~l~~~~~ 200 (446)
..+++|++|+|+++.+.+.. + ..-+..+|.|+.|.+.+|..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 44555555555555554321 1 11122455666666655544
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.19 E-value=1.6e-07 Score=86.42 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=16.6
Q ss_pred CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 159 GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
+..+++|++|+|+++.+..-.. ...+|.|+.|+++++.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC
T ss_pred hhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc
Confidence 3344555555555444433211 1344455555554443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=4.4e-06 Score=74.29 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=27.3
Q ss_pred cCceEEEEEchh-HHhhhcccccccCcc-ccceeEEEEecccchhHHHHHHhcCCCCcEEEEEe
Q 044387 292 NNTKNLTVSYGV-LCALDHAYHIWFPAL-SHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRK 353 (446)
Q Consensus 292 ~~l~~L~l~~~~-~~~~~~~~~~~~p~~-~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~ 353 (446)
++++.|.++.+. +..+ ....+..+ ++|+.|+++.+.... +.. ..+++|+.|.+..
T Consensus 179 ~~L~~L~L~~n~~l~~i---~~~~~~~l~~~L~~L~l~~N~l~~--l~~--~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVI---DKDAFGGVYSGPSLLDVSQTSVTA--LPS--KGLEHLKELIARN 235 (239)
T ss_dssp CEEEEEECTTCTTCCEE---CTTTTTTCSBCCSEEECTTCCCCC--CCC--TTCTTCSEEECTT
T ss_pred CCCCEEEcCCCCCcccC---CHHHhhccccCCcEEECCCCcccc--CCh--hHhccCceeeccC
Confidence 466777766552 3321 12233444 667777775433211 000 1466777776654
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.16 E-value=2.9e-07 Score=95.30 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCceEEEEEecCCCccccCCccccc--CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCC
Q 044387 115 RNAREIELYLDQNHRVELPEELYTS--VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPE 176 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~ 176 (446)
..+++|.+..+... ...|..+..+ ++|+.|+|+++.. .+.+..+..+++|++|+|+++.+.
T Consensus 222 ~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 222 TSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp SCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred ccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 46666666432211 1122223333 2366666666211 122223445566666666655444
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.14 E-value=6.5e-07 Score=77.22 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=56.0
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCC-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPA-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
.++++.+..+.- ..+| .+..+++|++|++++ +.+..+ ....+++|++|+|+++.+.+... ..++.+|.|+.|.
T Consensus 45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~--n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINN--IHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLD 118 (197)
T ss_dssp TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEES--CCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEE
T ss_pred CccEEeccCCCc--cChH-HHhcCCCCCEEEccC--CCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEE
Confidence 566666655322 2445 455577777777777 444432 45567777777777776655322 2245677777777
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
+.+|...+.. ...+...++|+.|.+..|
T Consensus 119 Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSI-LTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGG-HHHHTTCSSCCEEECCSC
T ss_pred ecCCccCcHh-HHHHhhCCCCCEEEccCC
Confidence 7776543100 110012345666665555
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.12 E-value=1.4e-06 Score=80.03 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=15.8
Q ss_pred CcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 163 PNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
++|+.|+|+++.+..-. ...+.+++.|+.|.+.++.
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc
Confidence 44555555554443221 1223444555555555443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.12 E-value=1.7e-06 Score=77.05 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeec-CCchhhhhhhhcCCccceeEEEe-ecCCCCCCeEEEeecCCcc
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLES-PENSLTEKLFCSCPALEELSIQA-YLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~-~~~~~~~~~~~~i~~~~L~ 216 (446)
++|++|+|+++.. .++...+..+++|++|+|+++. +..- -...+.+++.|+.|.+.+ +.......-. +...++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDA-LKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTS-EECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHH-hCCCCCCC
Confidence 3778888887222 2223345677888888888775 4431 122356778888888877 4332111101 02345666
Q ss_pred eEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCce---EEEEEEEeCccccCChhhHHHHHHhccC
Q 044387 217 RCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLT---DVILDIVYGEWSRVDPNRAIQLLQRLNN 293 (446)
Q Consensus 217 ~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~---~~~l~~~~~~~~~~~~~~~~~~l~~l~~ 293 (446)
.|.+.++....- | .+..+++|+ .+++.... ...... ...+.++++
T Consensus 109 ~L~l~~n~l~~l------------p---------------~~~~l~~L~~L~~L~l~~N~-~l~~i~----~~~~~~l~~ 156 (239)
T 2xwt_C 109 FLGIFNTGLKMF------------P---------------DLTKVYSTDIFFILEITDNP-YMTSIP----VNAFQGLCN 156 (239)
T ss_dssp EEEEEEECCCSC------------C---------------CCTTCCBCCSEEEEEEESCT-TCCEEC----TTTTTTTBS
T ss_pred EEeCCCCCCccc------------c---------------ccccccccccccEEECCCCc-chhhcC----cccccchhc
Confidence 666666522110 0 012233333 44333210 100111 112566788
Q ss_pred ce-EEEEEchhHHhhhcccccccCccccceeEEEEecc-cchhHHHHHHhcC-CCCcEEEEEecc
Q 044387 294 TK-NLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGA-IGWAVLPVILSSS-QNLQSLILRKQS 355 (446)
Q Consensus 294 l~-~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~-~~~~~l~~lL~~~-p~L~~L~i~~~~ 355 (446)
++ .|.++.+.+..+. ...+.. .+|++|++..+. ... .-...+..+ ++|+.|++..+.
T Consensus 157 L~~~L~l~~n~l~~i~---~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQ---GYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp SEEEEECCSCCCCEEC---TTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCC
T ss_pred ceeEEEcCCCCCcccC---HhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCc
Confidence 88 8888876554321 112222 578888887653 211 111235667 999999988755
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.10 E-value=9.6e-07 Score=73.95 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
..+++|.+..+.-....+|..+..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+. +...+.++|.|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~--n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN--VGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES--SCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC--CCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 35677766554322235676666688888888888 54433 4556788888888888887664 45556678888888
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeec
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~ 224 (446)
++.+|...+...+..+...++|+.|.+.++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 8888865433211100234567777776663
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.10 E-value=2.6e-06 Score=71.31 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc--hhHHHHHHhcCCCCcEEEEEeccc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG--WAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+..+++++.|.++.+.+..+. ....+..+++|++|+++.+... .......+..+|+|+.|++..+..
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 344555555555554332210 0123345566777777655431 112234678889999998888764
No 93
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=9.1e-07 Score=73.90 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=59.6
Q ss_pred cccCCcccccCcccEEEEeceeEeecCCC---CccCCcccEEEeeeec-CCchhhhhhhh---cCCccceeEEEeecCCC
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVPAG---GTSFPNVKILSVQLES-PENSLTEKLFC---SCPALEELSIQAYLNDE 202 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~~~---~~~~~~L~~L~L~~~~-~~~~~l~~lls---~cp~Le~L~l~~~~~~~ 202 (446)
..||..-...-.|++|+|++ |.+.+.+ ..++++|++|+|++|. ++|..+..+-. .||.|++|+|++|....
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~--~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATD--SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEES--CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ccCCcccCCCceEeEEeCcC--CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 45665444456789999998 6655432 4578889999999985 66666777665 37889999999886422
Q ss_pred CCCeEEEeecCCcceEEEeee
Q 044387 203 GPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 203 ~~~~~~~i~~~~L~~L~l~~~ 223 (446)
...+..+..+++|+.|.+.+|
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCCEEECCCC
Confidence 222221123455666666655
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.08 E-value=2.1e-06 Score=78.93 Aligned_cols=98 Identities=11% Similarity=-0.031 Sum_probs=66.6
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
..++.+.+..+. ...++ .+..+++|++|+|++ +.+.. +....+++|++|+|+++.+.+- .. +..++.|+.|
T Consensus 46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~--n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNG--NKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCS--SCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEE
T ss_pred CcccEEEccCCC--cccCh-hHhcCCCCCEEEccC--CccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEE
Confidence 357777665432 23344 355689999999999 65543 2377899999999999988763 22 7789999999
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
++.+|...+...+ ...++|+.|.+.++
T Consensus 118 ~L~~n~i~~~~~l---~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 118 SLEHNGISDINGL---VHLPQLESLYLGNN 144 (291)
T ss_dssp ECTTSCCCCCGGG---GGCTTCCEEECCSS
T ss_pred ECCCCcCCCChhh---cCCCCCCEEEccCC
Confidence 9998875433211 23456666666655
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.03 E-value=9.7e-08 Score=88.83 Aligned_cols=227 Identities=13% Similarity=0.052 Sum_probs=132.4
Q ss_pred cceEEEEEecCCCCccchhHHHHHHHhCCceEEEEEecCCCccccCCcc--cccCcccEEEEeceeEeecCC-------C
Q 044387 88 NITTFFVHCSRPVDLSSFHLWVCSAVRRNAREIELYLDQNHRVELPEEL--YTSVSVEVLKLMSDFVIKVPA-------G 158 (446)
Q Consensus 88 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~l~~~-------~ 158 (446)
.++.+.+.-. ......+...........+++|.+..+.-. ...|..+ ..+++|++|+|++ +.+... .
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~--n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRN--VSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEES--CCCSSTTSSHHHHH
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeec--ccccchhhhhHHHH
Confidence 4566665533 223344555566666678999999765322 3445555 5689999999999 655431 1
Q ss_pred CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCC-----CCeEEEeecCCcceEEEeeecccccccccc
Q 044387 159 GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEG-----PTTKFVISSSTLKRCTLWVATEGEMFTQAE 233 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~-----~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~ 233 (446)
...+++|++|+|+++.+... ....+++++.|+.|++++|...+. ...- ...++|+.|.+.+|....- ....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~ 216 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCP--HKFPAIQNLALRNTGMETP-TGVC 216 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT--TSSCCCCSCBCCSSCCCCH-HHHH
T ss_pred hhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhh--hcCCCCCEEECCCCCCCch-HHHH
Confidence 24689999999999988543 334567899999999999864211 0101 2346788888877732110 0000
Q ss_pred eeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhccccc
Q 044387 234 YKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHI 313 (446)
Q Consensus 234 ~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 313 (446)
..+.-..++|++|+++++..... .|..+ .-+..+++++.|.++.+.+..+ +.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~-----------------------~p~~~-~~~~~~~~L~~L~Ls~N~l~~l----p~ 268 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRAT-----------------------VNPSA-PRCMWSSALNSLNLSFAGLEQV----PK 268 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCC-----------------------CCSCC-SSCCCCTTCCCEECCSSCCCSC----CS
T ss_pred HHHHhcCCCCCEEECCCCCCCcc-----------------------chhhH-HhccCcCcCCEEECCCCCCCch----hh
Confidence 00111336667776665433211 00000 0012235778888877655422 22
Q ss_pred ccCccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 314 WFPALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 314 ~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+ +++|++|+++.+..... ..+..+|+|+.|++..+.
T Consensus 269 ~~--~~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 GL--PAKLRVLDLSSNRLNRA---PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CC--CSCCSCEECCSCCCCSC---CCTTSCCCCSCEECSSTT
T ss_pred hh--cCCCCEEECCCCcCCCC---chhhhCCCccEEECcCCC
Confidence 22 26888888877654321 114678999999888765
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=7.4e-07 Score=80.71 Aligned_cols=79 Identities=19% Similarity=0.034 Sum_probs=58.2
Q ss_pred ccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCC
Q 044387 136 LYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSST 214 (446)
Q Consensus 136 l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~ 214 (446)
+..+++|++|++++ +.+.. ++...+++|++|+|+++.+.+-. . +.++|.|+.|.+.+|...+...+. . ++
T Consensus 37 ~~~l~~L~~L~l~~--n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~--~--~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDN--SNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIP--S--AC 107 (263)
T ss_dssp HHHHTTCSEEECTT--SCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCC--C--SS
T ss_pred hhhcCcCcEEECcC--CCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCccc--c--Cc
Confidence 34578899999988 55443 46678899999999998887633 2 778899999999998765444333 2 77
Q ss_pred cceEEEeee
Q 044387 215 LKRCTLWVA 223 (446)
Q Consensus 215 L~~L~l~~~ 223 (446)
|+.|.+.++
T Consensus 108 L~~L~L~~N 116 (263)
T 1xeu_A 108 LSRLFLDNN 116 (263)
T ss_dssp CCEEECCSS
T ss_pred ccEEEccCC
Confidence 777777776
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.96 E-value=5e-07 Score=91.66 Aligned_cols=145 Identities=14% Similarity=0.028 Sum_probs=64.1
Q ss_pred cccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 137 YTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 137 ~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
..+++|+.|+|++ +.+.. +....+++|+.|+|+++.+.+-. -+..++.|+.|.|.+|...++..+ ...++|
T Consensus 62 ~~l~~L~~L~Ls~--N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~~l---~~l~~L 133 (605)
T 1m9s_A 62 QYLPNVTKLFLNG--NKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDINGL---VHLPQL 133 (605)
T ss_dssp GGCTTCCEEECTT--SCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCCCCCGGG---GGCTTC
T ss_pred ccCCCCCEEEeeC--CCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCCCCCccc---cCCCcc
Confidence 3355555555555 33322 12444555555555555444311 234455555555555543322110 233455
Q ss_pred ceEEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEEEEeCccccCChhhHHHHHHhccCc
Q 044387 216 KRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNT 294 (446)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l 294 (446)
+.|.+.+|..... ......++|+.|.++++..... .+..+++|+.+++....... . .-+..+++|
T Consensus 134 ~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--l------~~l~~l~~L 199 (605)
T 1m9s_A 134 ESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--L------RALAGLKNL 199 (605)
T ss_dssp SEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--C------GGGTTCTTC
T ss_pred CEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC--C------hHHccCCCC
Confidence 5555555422110 0011235555555555432211 14456666666554332111 1 124556677
Q ss_pred eEEEEEchh
Q 044387 295 KNLTVSYGV 303 (446)
Q Consensus 295 ~~L~l~~~~ 303 (446)
+.|.++.+.
T Consensus 200 ~~L~L~~N~ 208 (605)
T 1m9s_A 200 DVLELFSQE 208 (605)
T ss_dssp SEEECCSEE
T ss_pred CEEEccCCc
Confidence 777776543
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.96 E-value=9.6e-07 Score=80.37 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=71.8
Q ss_pred hCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 114 RRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 114 ~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..+++.|.+..+.- ..++ .+..+++|++|+|++ +.+.. + .+..+++|++|+|+++.+.+- ....+.+++.|
T Consensus 62 l~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 135 (272)
T 3rfs_A 62 LPNVRYLALGGNKL--HDIS-ALKELTNLTYLILTG--NQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNL 135 (272)
T ss_dssp CTTCCEEECTTSCC--CCCG-GGTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred CCCCcEEECCCCCC--CCch-hhcCCCCCCEEECCC--CccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCC
Confidence 35788888765332 2233 456689999999999 55543 2 357899999999999988743 33457789999
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeec
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~ 224 (446)
+.|.+.+|...+...-. +-..++|+.|.+.+|.
T Consensus 136 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQ 168 (272)
T ss_dssp CEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCccCHHH-hccCccCCEEECCCCC
Confidence 99999999754332211 0235678888887773
No 99
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=3.3e-05 Score=72.99 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=70.2
Q ss_pred HHHHHhhccCCCCcceEEEEEecCCCCcc----chhHHHHHHH-hCCceEEEEEecCCC--------ccccCCcccccCc
Q 044387 75 EFVETVLTGTYPTNITTFFVHCSRPVDLS----SFHLWVCSAV-RRNAREIELYLDQNH--------RVELPEELYTSVS 141 (446)
Q Consensus 75 ~~v~~~L~~~~~~~l~~l~l~~~~~~~~~----~~~~wl~~~~-~~~v~~L~l~~~~~~--------~~~lp~~l~~~~~ 141 (446)
+.+.++|.......|+.+.+.... ++.. .+..+...+. -.++++|.+...... ...+...+-.+++
T Consensus 95 ~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~ 173 (362)
T 2ra8_A 95 NLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL 173 (362)
T ss_dssp CHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT
T ss_pred HHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC
Confidence 445555655555567777766432 2211 2233332221 248888887432110 0123333445789
Q ss_pred ccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhh-cCCccceeEEEe
Q 044387 142 VEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFC-SCPALEELSIQA 197 (446)
Q Consensus 142 L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls-~cp~Le~L~l~~ 197 (446)
|+.|.|.++. .+..+. ...++|++|+|..+.+.++.+..+.. .+|+|+.|.|..
T Consensus 174 L~~L~L~g~~-~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 174 LNNLKIKGTN-NLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CCEEEEECCB-TCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CcEEEEeCCC-Cceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 9999998731 233333 35889999999988887776665543 689999998864
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.94 E-value=1.8e-06 Score=78.65 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=109.8
Q ss_pred CceEEEEEecCCCccccCC-cccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++|++..+. ...++. .+..+++|++|+|+++.. .+....+..+++|++|+|+++.+.+-. ...+.+++.|+.|
T Consensus 29 ~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred CccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEE
Confidence 56666664322 233443 344578888888888321 222234667888888888888776532 2345678888888
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEE---EecCCCce----E
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLT----D 266 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~----~ 266 (446)
.+.++...+..... +...++|+.|.+.++..... ......-..++|++|.++++....+. +..+++|+ .
T Consensus 106 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchh-cccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 88887654333322 02457788888887733210 00011123478888888876544321 22334444 3
Q ss_pred EEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecc
Q 044387 267 VILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGA 330 (446)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 330 (446)
+++. .+......+. .-...+++.|.++.+.+..+ ....+..+++|++|+++.+.
T Consensus 182 L~ls--~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLS--LNPMNFIQPG-----AFKEIRLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECC--SSCCCEECTT-----SSCSCCEEEEECCSSCCSCC---CTTTTTTCCSCCEEECCSSC
T ss_pred eecC--CCcccccCcc-----ccCCCcccEEECCCCceeec---CHhHhcccccccEEEccCCc
Confidence 3332 2221111111 11223799999987765432 12334567789999997544
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.94 E-value=6.4e-06 Score=74.76 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=96.6
Q ss_pred CceEEEEEecCCCccccCC-cccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 116 NAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
++++|.+..+. ...+|. .+..+++|++|+|++ +.+.. ..+..+++|++|+|+++.+..-. ...+.+++.|+
T Consensus 38 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCC
T ss_pred CCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCC
Confidence 56666665432 234554 344588999999988 54432 22457889999999988776432 24567789999
Q ss_pred eeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEE
Q 044387 192 ELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDI 271 (446)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~ 271 (446)
.|.+.++.......-. +...++|+.|.+..+....-. . ...-..++|++|.++++...
T Consensus 113 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-~---~~~~~l~~L~~L~L~~n~l~----------------- 170 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLP-K---GVFDKLTSLKELRLYNNQLK----------------- 170 (270)
T ss_dssp EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-T---TTTTTCTTCCEEECCSSCCS-----------------
T ss_pred EEECCCCccCeeCHHH-hCcCcCCCEEECCCCcCCccC-H---hHccCCcccceeEecCCcCc-----------------
Confidence 9999888654222111 013456666666665221100 0 00011244444444433211
Q ss_pred EeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEec
Q 044387 272 VYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVG 329 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~ 329 (446)
...+ ..+..+++++.|.++.+.+..+ ....+..+++|++|++..+
T Consensus 171 ------~~~~----~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 171 ------RVPE----GAFDKLTELKTLKLDNNQLKRV---PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ------CCCT----TTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSS
T ss_pred ------EeCh----hHhccCCCcCEEECCCCcCCcC---CHHHhccccCCCEEEecCC
Confidence 1111 1245667888888877654321 1233456678888888754
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.91 E-value=4.4e-06 Score=74.94 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=43.5
Q ss_pred ccccCCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLND 201 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~ 201 (446)
...+|..+. ++|+.|+|++ +.+.. ..+..+++|++|+|+++.+.+- ....+.+++.|+.|.+.++...
T Consensus 26 l~~~p~~~~--~~l~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccCCCCC--CCCCEEEccC--CCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCccc
Confidence 345555443 5788888887 43332 3456778888888888776553 2334566788888888777643
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.90 E-value=2.8e-06 Score=69.52 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=17.7
Q ss_pred ccccceeEEEEecccch--hHHHHHHhcCCCCcEEEE
Q 044387 317 ALSHLQHLEVAVGAIGW--AVLPVILSSSQNLQSLIL 351 (446)
Q Consensus 317 ~~~~L~~L~l~~~~~~~--~~l~~lL~~~p~L~~L~i 351 (446)
.+++|++|+++.+.... ......+..+|+|+.|++
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 34455555554433211 112345677777777754
No 104
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.90 E-value=3e-06 Score=76.64 Aligned_cols=37 Identities=32% Similarity=0.705 Sum_probs=34.5
Q ss_pred CcccCCCChHHHHHHhccCCcccee-eecccccchHHH
Q 044387 9 ADWISALPDSVLCHILSYLPTKNAV-ATSLLARRWKLV 45 (446)
Q Consensus 9 ~D~is~LPd~vL~~Ils~L~~~~~~-r~s~lsrrWr~l 45 (446)
...+..||||||.+||++||.++++ |++.|||+||.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999 999999999976
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.89 E-value=1.4e-06 Score=87.53 Aligned_cols=185 Identities=10% Similarity=-0.004 Sum_probs=111.7
Q ss_pred hCCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 114 RRNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 114 ~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
..+++.|.+..+. ...+|..++ ++|++|+|++ +.+..-+ ..+++|++|+|+++.+.. +.. +.. +|+.|
T Consensus 58 ~~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls~--N~l~~ip-~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 58 INQFSELQLNRLN--LSSLPDNLP--PQITVLEITQ--NALISLP-ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp HTTCSEEECCSSC--CSCCCSCCC--TTCSEEECCS--SCCSCCC-CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred cCCccEEEeCCCC--CCccCHhHc--CCCCEEECcC--CCCcccc-cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 4578888886543 234777664 7899999998 5444322 568999999999998776 333 322 89999
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccCcEEEecCCCceEEEEEEEe
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVY 273 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~ 273 (446)
.+.+|...++ . -..++|+.|.+.++.... +....++|++|.++++....+.... ++|+.+++....
T Consensus 126 ~Ls~N~l~~l---p--~~l~~L~~L~Ls~N~l~~--------lp~~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 126 DVDNNQLTML---P--ELPALLEYINADNNQLTM--------LPELPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNL 191 (571)
T ss_dssp ECCSSCCSCC---C--CCCTTCCEEECCSSCCSC--------CCCCCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSC
T ss_pred ECCCCcCCCC---C--CcCccccEEeCCCCccCc--------CCCcCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCC
Confidence 9999876432 2 245789999998884332 1114678999999887544221111 778888776432
Q ss_pred CccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEeccc
Q 044387 274 GEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAI 331 (446)
Q Consensus 274 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~ 331 (446)
... ...- ...+......++.|.++.+.+..+ +..+..+++|+.|+++.+..
T Consensus 192 L~~--lp~~-~~~L~~~~~~L~~L~Ls~N~l~~l----p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 192 LES--LPAV-PVRNHHSEETEIFFRCRENRITHI----PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSS--CCCC-C--------CCEEEECCSSCCCCC----CGGGGGSCTTEEEECCSSSC
T ss_pred CCc--hhhH-HHhhhcccccceEEecCCCcceec----CHHHhcCCCCCEEEeeCCcC
Confidence 221 1100 001122223348888877655432 22233467888888876654
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.85 E-value=1.2e-06 Score=71.79 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=62.7
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeE
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELS 194 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~ 194 (446)
+++++.+..+.-....+|..+..+++|+.|+|++ +.+.. +....+++|++|+|+++.+.+. +...+.++|.|+.|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN--VGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT--SCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC--CCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence 4566655443221125666556678888888887 44433 4456778888888888877654 445566688888888
Q ss_pred EEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 195 IQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 195 l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
+.+|...+......+...++|+.|.+.+|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 88776532110010023455666666655
No 107
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.78 E-value=2.4e-06 Score=76.32 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=32.2
Q ss_pred ccCCCChHHHHHHhccCCccceeeecccccchHH
Q 044387 11 WISALPDSVLCHILSYLPTKNAVATSLLARRWKL 44 (446)
Q Consensus 11 ~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~ 44 (446)
.|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999995
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.75 E-value=1.2e-05 Score=80.64 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=14.2
Q ss_pred cccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 164 NVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
+|++|+|+++.+.+ +.. .+++|+.|.+++|.
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ 151 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc
Confidence 45555555544433 111 34455555555544
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.71 E-value=6.2e-05 Score=71.01 Aligned_cols=215 Identities=14% Similarity=0.072 Sum_probs=113.3
Q ss_pred CCceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-e-ecCCCCccCCcccEEEe-eeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-I-KVPAGGTSFPNVKILSV-QLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~-l~~~~~~~~~~L~~L~L-~~~~~~~~~l~~lls~cp~L 190 (446)
.++++|.+.... ...+|...|. +++|++|+|+++.. . ++...+..+++|+++.. ....+..- -...+.++|+|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 467777776533 3467766554 78899999888321 1 22223456777765444 33344321 13346678899
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEE-----ecCCceEEEeeecccCcEEEe--cCCC
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRI-----TAPSLERLHIMSDIFGKFVVH--DLNS 263 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i-----~ap~L~~L~l~~~~~~~~~~~--~~p~ 263 (446)
+.|.+.++.........+ .....+..|.+..+... ..+.. ....++.|.+++.....+... ..++
T Consensus 107 ~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i-------~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINI-------HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp CEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTC-------CEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred ccccccccccccCCchhh-cccchhhhhhhcccccc-------ccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 999998886543322110 33445666666554211 11111 123577787777654432211 2333
Q ss_pred ceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcC
Q 044387 264 LTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSS 343 (446)
Q Consensus 264 L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~ 343 (446)
|+++.+... +...... ...+.++++++.|.++.+.+..+.. ..|.+|++|.+..... ...++. +..+
T Consensus 179 L~~l~l~~~-n~l~~i~----~~~f~~l~~L~~LdLs~N~l~~lp~------~~~~~L~~L~~l~~~~-l~~lP~-l~~l 245 (350)
T 4ay9_X 179 LDELNLSDN-NNLEELP----NDVFHGASGPVILDISRTRIHSLPS------YGLENLKKLRARSTYN-LKKLPT-LEKL 245 (350)
T ss_dssp EEEEECTTC-TTCCCCC----TTTTTTEECCSEEECTTSCCCCCCS------SSCTTCCEEECTTCTT-CCCCCC-TTTC
T ss_pred hhHHhhccC-CcccCCC----HHHhccCcccchhhcCCCCcCccCh------hhhccchHhhhccCCC-cCcCCC-chhC
Confidence 444433211 1111111 1246788999999998775543211 1356777776643221 111111 4667
Q ss_pred CCCcEEEEEe
Q 044387 344 QNLQSLILRK 353 (446)
Q Consensus 344 p~L~~L~i~~ 353 (446)
++|+.+++..
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 8888888754
No 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.70 E-value=5.7e-07 Score=85.72 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=46.7
Q ss_pred HHHHHHhccCceEEEEEchhHHhhhccc-ccccCccccceeEEEEecccch---hHHHHHHhcCCCCcEEEEEeccc
Q 044387 284 AIQLLQRLNNTKNLTVSYGVLCALDHAY-HIWFPALSHLQHLEVAVGAIGW---AVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 284 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~p~~~~L~~L~l~~~~~~~---~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+...+...++++.|.++.+.+....... ...+...++|++|+++.+.... ..+...++.+|+|++|++..+.-
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 4445566777888888776543321111 2334445678888888776543 35666677889999999888763
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.68 E-value=1e-05 Score=79.24 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=72.9
Q ss_pred cccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCc
Q 044387 164 NVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSL 243 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L 243 (446)
+|++|+++++.+.. +.. +..++.|+.|++.++...+. . -..++|+.|.+.++...+ +....++|
T Consensus 216 ~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l---~--~~~~~L~~L~l~~N~l~~--------l~~~~~~L 279 (454)
T 1jl5_A 216 SLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTL---P--DLPPSLEALNVRDNYLTD--------LPELPQSL 279 (454)
T ss_dssp TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSC---C--SCCTTCCEEECCSSCCSC--------CCCCCTTC
T ss_pred cccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCcc---c--ccccccCEEECCCCcccc--------cCcccCcC
Confidence 44455544444431 111 34555566666655543211 1 112456666665552211 11113566
Q ss_pred eEEEeeecccCcEEEecCCCceEEEEEEEeCccccCChhhHHHHHHhc-cCceEEEEEchhHHhhhcccccccC-ccccc
Q 044387 244 ERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRAIQLLQRL-NNTKNLTVSYGVLCALDHAYHIWFP-ALSHL 321 (446)
Q Consensus 244 ~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~~p-~~~~L 321 (446)
++|+++++....+. .-.++|+.+++....... +..+ ++++.|.++.+.+.. +| .+++|
T Consensus 280 ~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l~~-----------i~~~~~~L~~L~Ls~N~l~~--------lp~~~~~L 339 (454)
T 1jl5_A 280 TFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS-----------LCDLPPSLEELNVSNNKLIE--------LPALPPRL 339 (454)
T ss_dssp CEEECCSSCCSEES-CCCTTCCEEECCSSCCSE-----------ECCCCTTCCEEECCSSCCSC--------CCCCCTTC
T ss_pred CEEECcCCccCccc-CcCCcCCEEECcCCcCCc-----------ccCCcCcCCEEECCCCcccc--------ccccCCcC
Confidence 66666655433210 112456666554321110 1112 467777776654321 22 24678
Q ss_pred eeEEEEecccchhHHHHHHhcCCCCcEEEEEeccc
Q 044387 322 QHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 322 ~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
++|+++.+... .++. .+++|+.|++..+.-
T Consensus 340 ~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 340 ERLIASFNHLA--EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CEEECCSSCCS--CCCC---CCTTCCEEECCSSCC
T ss_pred CEEECCCCccc--cccc---hhhhccEEECCCCCC
Confidence 88888765432 1111 468888888887653
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.68 E-value=5.3e-06 Score=71.45 Aligned_cols=65 Identities=23% Similarity=0.145 Sum_probs=36.4
Q ss_pred cCCcccccCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 132 LPEELYTSVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 132 lp~~l~~~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
+|..+..+++|++|+|++ +.+.. |....+++|++|+|+++.+.+ +...+..+|.|+.|++++|..
T Consensus 40 l~~~~~~l~~L~~L~ls~--n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 40 MDATLSTLKACKHLALST--NNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp CHHHHHHTTTCSEEECSE--EEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred hhHHHhcCCCCCEEECCC--CCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence 343455566777777776 44332 344456666666666665552 333444456666666666543
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.67 E-value=5.2e-06 Score=81.41 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=93.0
Q ss_pred cccEEEEeceeEeec-CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcceEE
Q 044387 141 SVEVLKLMSDFVIKV-PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKRCT 219 (446)
Q Consensus 141 ~L~~L~L~~~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~ 219 (446)
+|++|++++ +.+. .|....+++|++|+++++.+.+ +. ...+.|+.|++.+|...+ +. ...++|+.|.
T Consensus 216 ~L~~L~l~~--n~l~~lp~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~N~l~~---l~--~~~~~L~~L~ 283 (454)
T 1jl5_A 216 SLESIVAGN--NILEELPELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNVRDNYLTD---LP--ELPQSLTFLD 283 (454)
T ss_dssp TCCEEECCS--SCCSSCCCCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEECCSSCCSC---CC--CCCTTCCEEE
T ss_pred cccEEECcC--CcCCcccccCCCCCCCEEECCCCcCCc--cc---ccccccCEEECCCCcccc---cC--cccCcCCEEE
Confidence 455555555 3222 2456688999999999988765 21 235899999999987543 22 2347899999
Q ss_pred EeeecccccccccceeEEEecCCceEEEeeecccCcEEEecC-CCceEEEEEEEeCccccCChhhHHHHHHhccCceEEE
Q 044387 220 LWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDL-NSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLT 298 (446)
Q Consensus 220 l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 298 (446)
+.++... .+....++|++|.++++.... +... ++|+.+++...... + +...+++++.|.
T Consensus 284 ls~N~l~--------~l~~~~~~L~~L~l~~N~l~~--i~~~~~~L~~L~Ls~N~l~--~--------lp~~~~~L~~L~ 343 (454)
T 1jl5_A 284 VSENIFS--------GLSELPPNLYYLNASSNEIRS--LCDLPPSLEELNVSNNKLI--E--------LPALPPRLERLI 343 (454)
T ss_dssp CCSSCCS--------EESCCCTTCCEEECCSSCCSE--ECCCCTTCCEEECCSSCCS--C--------CCCCCTTCCEEE
T ss_pred CcCCccC--------cccCcCCcCCEEECcCCcCCc--ccCCcCcCCEEECCCCccc--c--------ccccCCcCCEEE
Confidence 9887432 111123788888888765543 2344 47888877543211 1 112257888888
Q ss_pred EEchhHHhhhcccccccCccccceeEEEEecc
Q 044387 299 VSYGVLCALDHAYHIWFPALSHLQHLEVAVGA 330 (446)
Q Consensus 299 l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 330 (446)
++.+.+..+ +. .+++|++|+++.+.
T Consensus 344 L~~N~l~~l----p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 344 ASFNHLAEV----PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSSCCSCC----CC---CCTTCCEEECCSSC
T ss_pred CCCCccccc----cc---hhhhccEEECCCCC
Confidence 877644421 11 34678888887554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.62 E-value=1.6e-05 Score=71.77 Aligned_cols=117 Identities=9% Similarity=0.024 Sum_probs=73.7
Q ss_pred cCcccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcce
Q 044387 139 SVSVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKR 217 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~ 217 (446)
..+++.+.++. ..+.. +....+++|++|+++++.+.+- . -+..+++|+.|.+.+|...+... - ...++|+.
T Consensus 18 l~~l~~l~l~~--~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~-l--~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGK--QSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSP-L--KDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTC--SCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-G--TTCSSCCE
T ss_pred HHHHHHHHhcC--CCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChh-h--ccCCCCCE
Confidence 34455555555 33332 2456789999999999988763 2 46789999999999997654333 1 45678999
Q ss_pred EEEeeecccccccccceeEEEecCCceEEEeeecccCcE-EEecCCCceEEEEE
Q 044387 218 CTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILD 270 (446)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~ 270 (446)
|.+.++....- ..+. .++|++|.++++..... .+..+++|+.+++.
T Consensus 90 L~L~~N~l~~l-----~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 90 LSVNRNRLKNL-----NGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136 (263)
T ss_dssp EECCSSCCSCC-----TTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECT
T ss_pred EECCCCccCCc-----Cccc--cCcccEEEccCCccCCChhhcCcccccEEECC
Confidence 99988843321 0111 17888888877644321 23445555555543
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.61 E-value=8.4e-05 Score=75.81 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=56.2
Q ss_pred CceEEEEEecCCCccccCCccc-ccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELY-TSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++|++... ....+|...| .+++|++|+|+++.. .+++..+..+++|++|+|+++.+..-. ...+.++++|++|
T Consensus 53 ~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEE
T ss_pred CCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEE
Confidence 5666665442 2344554333 477777777777211 222334556777777777777665421 2345667777777
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
++.+|...++....+ -..++|+.|.+..+
T Consensus 130 ~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 130 VAVETNLASLENFPI-GHLKTLKELNVAHN 158 (635)
T ss_dssp ECTTSCCCCSTTCCC-TTCTTCCEEECCSS
T ss_pred ECCCCcCCCCChhhh-hcCcccCeeccccC
Confidence 777765433222110 12355666666555
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.53 E-value=7.1e-05 Score=65.98 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=54.6
Q ss_pred ccccCCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPT 205 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~ 205 (446)
...+|..+. ++|++|+|++ +.+.. ..+..+++|++|+|+++.+..- -...+.+++.|+.|+++++.......
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCccCCCCC--CCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccCh
Confidence 345555433 7788888888 44432 3456788888888888877432 22445678888888888876542221
Q ss_pred eEEEeecCCcceEEEeee
Q 044387 206 TKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 206 ~~~~i~~~~L~~L~l~~~ 223 (446)
-. +-..++|+.|.+.++
T Consensus 106 ~~-~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 106 AV-FDRLVHLKELFMCCN 122 (229)
T ss_dssp TT-TTTCTTCCEEECCSS
T ss_pred hH-hCcchhhCeEeccCC
Confidence 11 013456666666665
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.53 E-value=0.00011 Score=64.32 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=49.7
Q ss_pred cccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEE
Q 044387 130 VELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKF 208 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~ 208 (446)
..+|..+. ++|+.|+|+++.. .+....+..+++|++|+|+++.+..- ....+.+++.|+.|+|+++....+..-.
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~- 99 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSL- 99 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTT-
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhH-
Confidence 44555433 5677777777322 22223456677777887777766542 1234566777777777777543221100
Q ss_pred EeecCCcceEEEeee
Q 044387 209 VISSSTLKRCTLWVA 223 (446)
Q Consensus 209 ~i~~~~L~~L~l~~~ 223 (446)
+...++|+.|.+.++
T Consensus 100 f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN 114 (220)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 012355666666655
No 118
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.51 E-value=7e-05 Score=66.99 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=61.6
Q ss_pred CceEEEEEecCCCccccCC-cccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 116 NAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
.++.|.+..+. ...++. .+..+++|++|+|++ +.+.. ..+..+++|++|+|+++.+..- ....+.++++|+
T Consensus 36 ~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDY--NQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred CCCEEEccCCC--cCccCHhHhcCcccCCEEECCC--CcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCC
Confidence 45555554322 223333 344578888888888 44432 2356788888888888877642 234456788888
Q ss_pred eeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 192 ELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
.|.+.++...+...-. +...++|+.|.+.++
T Consensus 111 ~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGV-FDRLTKLKELRLNTN 141 (251)
T ss_dssp EEECCSSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred EEEcCCCcCCCcChhH-hccCCcccEEECcCC
Confidence 8888887654222111 012456777777666
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.49 E-value=1.4e-05 Score=68.78 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=24.7
Q ss_pred CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 159 GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 159 ~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
...+++|++|+|+++.+.+ +. .+.+++.|+.|++.+|..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE
T ss_pred HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc
Confidence 3456677777777776655 22 455667777777777654
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=3.1e-05 Score=64.55 Aligned_cols=86 Identities=6% Similarity=-0.037 Sum_probs=55.5
Q ss_pred cCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEee-----cCCcceEEEeeeccccccccccee
Q 044387 161 SFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVIS-----SSTLKRCTLWVATEGEMFTQAEYK 235 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~-----~~~L~~L~l~~~~~~~~~~~~~~~ 235 (446)
.-.+|+.|+|+++.+++.++..+ ++||.|++|.|.+|...+...+.. +. +++|+.|.+..|..... .+...
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~ 134 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTD--KGIIA 134 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCH--HHHHH
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCH--HHHHH
Confidence 34579999999999999888765 799999999999997432222221 11 24688888888742111 11112
Q ss_pred EEEecCCceEEEeeec
Q 044387 236 VRITAPSLERLHIMSD 251 (446)
Q Consensus 236 ~~i~ap~L~~L~l~~~ 251 (446)
+. .+|+|++|.++++
T Consensus 135 L~-~~~~L~~L~L~~c 149 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDL 149 (176)
T ss_dssp GG-GCTTCCEEEEESC
T ss_pred Hh-cCCCCCEEECCCC
Confidence 21 3466666666554
No 121
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.46 E-value=1.5e-05 Score=77.99 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=37.1
Q ss_pred ccCcccCCCChHHHHHHhccCCccceeeecccccchHHHh
Q 044387 7 VKADWISALPDSVLCHILSYLPTKNAVATSLLARRWKLVW 46 (446)
Q Consensus 7 ~~~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~lw 46 (446)
...|.|+.||+|++.+||+|||.+++++++.|||+|+++-
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999753
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.35 E-value=7.9e-05 Score=64.47 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=47.6
Q ss_pred cccCCcccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
..+|..+ .++|++|+|++ ..+.. + .+..+++|++|+|++..+..- ....+.+++.|+.|++.++...+...-
T Consensus 20 ~~~p~~~--~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSCC--CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCC--CCCCcEEEcCC--CccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 3444433 34677777777 43332 1 245677777777777766532 233456677777777777654322110
Q ss_pred EEEeecCCcceEEEeee
Q 044387 207 KFVISSSTLKRCTLWVA 223 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~ 223 (446)
. +...++|+.|.+.++
T Consensus 95 ~-~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 95 V-FDKLTQLKELALNTN 110 (208)
T ss_dssp T-TTTCTTCCEEECCSS
T ss_pred H-hcCccCCCEEEcCCC
Confidence 0 012345666665554
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.35 E-value=0.00026 Score=66.65 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=57.8
Q ss_pred ccccCCcccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEee-cCCCCCCe
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAY-LNDEGPTT 206 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~-~~~~~~~~ 206 (446)
...+|..+. +++++|+|+++.. .++...+.++++|++|+|+++.+.+.-=...+.+++.|+++....+ ....+..-
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 446676553 5799999998322 2333356789999999999987654221234667888877655544 32211100
Q ss_pred EEEeecCCcceEEEeeec
Q 044387 207 KFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~~ 224 (446)
. +-..++|+.|.+.++.
T Consensus 99 ~-f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 99 A-FQNLPNLQYLLISNTG 115 (350)
T ss_dssp S-BCCCTTCCEEEEEEEC
T ss_pred h-hhhccccccccccccc
Confidence 0 0245788888888874
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.30 E-value=5.2e-05 Score=71.86 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=41.8
Q ss_pred cccCCcccccCcccEEEEeceeE-eecCCCCc-cCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 130 VELPEELYTSVSVEVLKLMSDFV-IKVPAGGT-SFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~-~l~~~~~~-~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
..+|..+. +.++.|+|+++.. .+....+. .+++|++|+|+++.+..-. ...+.+++.|+.|+|+++..
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC
Confidence 44555433 3577888887322 22222333 7788888888887776422 23456778888888887754
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.29 E-value=0.00028 Score=61.63 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCccccCCcc-cccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEEL-YTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++|.+.... ...++... ..+++|+.|+|+++.. .+.+..+..+++|++|+|++..+..- -...+.+++.|+.|
T Consensus 33 ~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence 56666665432 23455433 3478999999998332 33344677889999999999887642 23446778999999
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
.+.++...+...-. +...++|+.|.+.++
T Consensus 110 ~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 110 LLNANKINCLRVDA-FQDLHNLNLLSLYDN 138 (220)
T ss_dssp ECCSSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred ECCCCCCCEeCHHH-cCCCCCCCEEECCCC
Confidence 99988754322111 023456777777666
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.29 E-value=0.00028 Score=61.62 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=28.6
Q ss_pred cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 139 SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 139 ~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
+++|++|+|+++.. .+.+..+..+++|++|+|+++.+..- ....+.+++.|+.|.++++..
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcC
Confidence 55555555555211 12222344555555555555554332 122344555555555555543
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.27 E-value=0.00023 Score=62.57 Aligned_cols=102 Identities=19% Similarity=0.069 Sum_probs=62.8
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVEL-PEELYTSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
.+++.|.+..+. ...+ |..+..+++|++|+|++ ..+.. ..+..+++|++|+|+++.+..- ....+..++.|
T Consensus 40 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhh
Confidence 466776665432 2233 33344578899999988 44432 2346788899999988877642 23445678889
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeee
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~ 223 (446)
+.|.+.++....+...- ...++|+.|.+.++
T Consensus 115 ~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGI--ERLTHLTHLALDQN 145 (229)
T ss_dssp CEEECCSSCCCSCCTTG--GGCTTCSEEECCSS
T ss_pred CeEeccCCcccccCccc--ccCCCCCEEECCCC
Confidence 99999888654221111 23455666666655
No 128
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.23 E-value=0.00023 Score=72.50 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=69.4
Q ss_pred CCceEEEEEecCCCccccCCcccc-cCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
.+++.|++..+ ....+|...|. +++|++|+|++ +.+. +..+.++++|++|+|+++.+..-. ...+.++++|
T Consensus 76 ~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L~Ls~--N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTG--NPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTL 150 (635)
T ss_dssp TTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTT--CCCCEECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTC
T ss_pred CCCCEEECCCC--cCCCcChhHhcCCCCCCEEEccC--CcCCCCCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCccc
Confidence 36777777543 33456665554 89999999998 4433 234678899999999988776421 2236788999
Q ss_pred ceeEEEeecCCCCCCeEEEeecCCcceEEEeeec
Q 044387 191 EELSIQAYLNDEGPTTKFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 191 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~ 224 (446)
+.|++.++.........++...+.|+.|.+..+.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999998865422211110235778888888773
No 129
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.18 E-value=9.3e-05 Score=72.00 Aligned_cols=37 Identities=30% Similarity=0.623 Sum_probs=35.5
Q ss_pred cCcccCCCChHHHHHHhccCCccceeeecccccchHH
Q 044387 8 KADWISALPDSVLCHILSYLPTKNAVATSLLARRWKL 44 (446)
Q Consensus 8 ~~D~is~LPd~vL~~Ils~L~~~~~~r~s~lsrrWr~ 44 (446)
..|.|+.||+|++.+||+||+.+++++++.|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 5799999999999999999999999999999999986
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.16 E-value=6e-05 Score=63.40 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=28.4
Q ss_pred cccEEEEeceeEeecC-CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecC
Q 044387 141 SVEVLKLMSDFVIKVP-AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLN 200 (446)
Q Consensus 141 ~L~~L~L~~~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~ 200 (446)
+|++|+|++ +.+.. +....+++|++|+|+++.+.+- -..++..+|.|+.|+++++..
T Consensus 43 ~L~~L~Ls~--N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSD--NEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCS--SCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCC--CCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCcC
Confidence 566666655 22211 3444555666666666555432 112334556666666655543
No 131
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.13 E-value=4.8e-05 Score=73.84 Aligned_cols=37 Identities=38% Similarity=0.681 Sum_probs=35.4
Q ss_pred cCcccCCCChH----HHHHHhccCCccceeeecccccchHH
Q 044387 8 KADWISALPDS----VLCHILSYLPTKNAVATSLLARRWKL 44 (446)
Q Consensus 8 ~~D~is~LPd~----vL~~Ils~L~~~~~~r~s~lsrrWr~ 44 (446)
..|.|+.||+| |+.+||+||+.+++++++.|||+|+.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999999999999999994
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.13 E-value=8.6e-05 Score=64.25 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=17.5
Q ss_pred ccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 160 TSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
..+++|++|+|+++.+..- ....+..++.|+.|++.++.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCc
Confidence 3445555555555444321 11223444555555555543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.12 E-value=4e-05 Score=64.48 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=36.9
Q ss_pred HHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccc--hhHHHHHHhcCCCCcEEEEEeccc
Q 044387 288 LQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIG--WAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 288 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
+..+++++.|.++.+.+..+.. ...+..+++|++|+++.+... ...-..++..+|+|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 3455566666666554422111 113334556677776654431 122234578889999988887664
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.08 E-value=0.00045 Score=60.32 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=58.4
Q ss_pred ccccCCcccccCcccEEEEeceeE-eecCC-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFV-IKVPA-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~-~l~~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
...+|..+. +.+++|+|+++.. .+.++ .+..+++|++|+|++..+..-. ...+.+++.|+.|.+.++...+...-
T Consensus 23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHh
Confidence 345665443 4578999998332 22222 2568999999999998876532 23567889999999999876433221
Q ss_pred EEEeecCCcceEEEeee
Q 044387 207 KFVISSSTLKRCTLWVA 223 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~ 223 (446)
. +...++|+.|.+.++
T Consensus 100 ~-~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 100 M-FKGLESLKTLMLRSN 115 (220)
T ss_dssp G-GTTCSSCCEEECTTS
T ss_pred H-hcCCcCCCEEECCCC
Confidence 1 023466777777766
No 135
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00017 Score=61.12 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=24.3
Q ss_pred cccceeEEE--Eeccc---chhHHHHHHhcCCCCcEEEEEecc
Q 044387 318 LSHLQHLEV--AVGAI---GWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 318 ~~~L~~L~l--~~~~~---~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.++|++|++ ..+.. ....+...++.++.|++|++..+.
T Consensus 120 n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 120 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 346777777 43433 234466777788888888876654
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.92 E-value=0.00075 Score=63.80 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=75.4
Q ss_pred CceEEEEEecCCCccccCCccc--ccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccce
Q 044387 116 NAREIELYLDQNHRVELPEELY--TSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEE 192 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~ 192 (446)
.++.|.+..+ ....++...+ .+++|+.|+|+++.. .+.+..+..+++|++|+|+++.+..- ....+.+++.|+.
T Consensus 40 ~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 116 (361)
T 2xot_A 40 YTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV 116 (361)
T ss_dssp TCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CCCEEECCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence 4555555442 2344555444 578899999988322 23334567888999999988877642 2334677889999
Q ss_pred eEEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeeccc
Q 044387 193 LSIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIF 253 (446)
Q Consensus 193 L~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 253 (446)
|.|.++.......-. +-..++|+.|.+.++....- ....-.-....++|+.|++++...
T Consensus 117 L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 117 LLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEECCSSCC
T ss_pred EECCCCcccEECHHH-hCCcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEECCCCCC
Confidence 999888653211101 02346788888777632211 000000012356777777766543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.91 E-value=0.00064 Score=57.93 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=53.4
Q ss_pred ccccCCcccccCcccEEEEeceeEeecC--C-C-CccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKVP--A-G-GTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGP 204 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~~--~-~-~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~ 204 (446)
...+|..++. +|++|+|++ ..+.. + + +..+++|++|+|++..+.+- ....+.+++.|+.|+++++...+..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 94 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred cCcCccCCCC--CCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccC
Confidence 3456654443 788888888 44332 2 2 56788888888888877653 1334667788888888887643211
Q ss_pred CeEEEeecCCcceEEEeee
Q 044387 205 TTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 205 ~~~~~i~~~~L~~L~l~~~ 223 (446)
.-. +...++|+.|.+.++
T Consensus 95 ~~~-~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 95 NKM-FLGLHQLKTLNLYDN 112 (192)
T ss_dssp SSS-STTCTTCCEEECCSS
T ss_pred HHH-hcCCCCCCEEECCCC
Confidence 100 012345566665555
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.83 E-value=0.00046 Score=69.42 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=53.3
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeecC-C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKVP-A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.++.|.+..+ ....+|. +..+++|+.|+|++ +.+.. | ....+++|++|+|+++.+.+ +. -++++++|+.|
T Consensus 442 ~L~~L~Ls~n--~l~~lp~-~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHK--DLTVLCH-LEQLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTS--CCSSCCC-GGGGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred CceEEEecCC--CCCCCcC-ccccccCcEeecCc--ccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence 4555554332 2234554 55567777777776 33321 2 35566777777777776665 33 45667777777
Q ss_pred EEEeecCCCCC-CeEEEeecCCcceEEEeee
Q 044387 194 SIQAYLNDEGP-TTKFVISSSTLKRCTLWVA 223 (446)
Q Consensus 194 ~l~~~~~~~~~-~~~~~i~~~~L~~L~l~~~ 223 (446)
.|++|...+.. .-. +...++|+.|.+.++
T Consensus 514 ~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 514 LLCNNRLQQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp ECCSSCCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred ECCCCCCCCCCCcHH-HhcCCCCCEEEecCC
Confidence 77776544321 111 023445555555555
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.77 E-value=0.00064 Score=56.99 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred cccCCcccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 130 VELPEELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 130 ~~lp~~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
..+|..++ ++|++|+|++ ..+.. + .+..+++|++|+|++..+..- ....+.+++.|+.|++.++...+...-
T Consensus 20 ~~~p~~~~--~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp SSCCTTCC--TTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCCCC--CCCcEEEeCC--CcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHH
Confidence 34554333 5777888777 43332 2 245677788888877766532 223456677788888877754322110
Q ss_pred EEEeecCCcceEEEeee
Q 044387 207 KFVISSSTLKRCTLWVA 223 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~ 223 (446)
. +-..++|+.|.+.++
T Consensus 95 ~-~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 95 V-FDKLTQLKELALDTN 110 (177)
T ss_dssp T-TTTCTTCCEEECCSS
T ss_pred H-hhCCcccCEEECcCC
Confidence 0 012345556655554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.68 E-value=0.0013 Score=56.11 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=32.8
Q ss_pred ccCCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeec
Q 044387 131 ELPEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYL 199 (446)
Q Consensus 131 ~lp~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~ 199 (446)
.+|..+..+++|+.|+|++ ..+. +..+..+++|++|+|++..+..-. ...+.+++.|+.|.|.++.
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSN--NRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp SCCGGGGGCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred hhHHHhhcccCCCEEECCC--CcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCCC
Confidence 3444444456666666665 3222 122445566666666665554321 1224455566666665554
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.66 E-value=0.0013 Score=56.10 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=53.9
Q ss_pred ccccCCcccccCcccEEEEeceeEeecC--CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKVP--AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
...+|..++ ++|++|+|++ ..+.. ..+..+++|++|+|++..+..- ....+.+++.|+.|+++++.......-
T Consensus 22 l~~ip~~~~--~~l~~L~L~~--n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDG--NQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCS--SCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCcCCCCCC--CCCCEEECCC--CcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHH
Confidence 345665443 5788888888 43332 3456788888888888877643 223466778888888888765322111
Q ss_pred EEEeecCCcceEEEeee
Q 044387 207 KFVISSSTLKRCTLWVA 223 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~ 223 (446)
. +...++|+.|.+.++
T Consensus 97 ~-f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 97 T-FDGLKSLRLLSLHGN 112 (193)
T ss_dssp T-TTTCTTCCEEECCSS
T ss_pred H-hCCCCCCCEEECCCC
Confidence 1 012355666666655
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.64 E-value=0.0017 Score=54.36 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=56.2
Q ss_pred CceEEEEEecCCCccccCCccc-ccCcccEEEEeceeEeecC---CCCccCCcccEEEeeeecCCchhhhhhhhcCCccc
Q 044387 116 NAREIELYLDQNHRVELPEELY-TSVSVEVLKLMSDFVIKVP---AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALE 191 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le 191 (446)
.+++|.+.... ...+|...+ .+++|++|+|++ +.+.. ..+..+++|++|+|++..+..- ....+..++.|+
T Consensus 29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~ 103 (177)
T 2o6r_A 29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQ--NQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK 103 (177)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCcEEEeCCCc--ccEeCHHHhcCcccccEEECCC--CcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence 56666665432 234555544 488999999998 54433 2356889999999999887643 233467789999
Q ss_pred eeEEEeecCC
Q 044387 192 ELSIQAYLND 201 (446)
Q Consensus 192 ~L~l~~~~~~ 201 (446)
.|++.++...
T Consensus 104 ~L~l~~N~l~ 113 (177)
T 2o6r_A 104 ELALDTNQLK 113 (177)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCcce
Confidence 9999988654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.62 E-value=0.0015 Score=54.43 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=45.4
Q ss_pred ccccCCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLND 201 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~ 201 (446)
...+|..+. ++|++|+|++ ..+. +..+..+++|++|+|++..+..- -...+.+++.|+.|+|+++...
T Consensus 21 l~~ip~~~~--~~l~~L~L~~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYD--NQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred cCccCccCC--CCCcEEEcCC--CcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccC
Confidence 345665443 6788888888 4333 23456788888888888877642 2334567788888888887653
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.52 E-value=0.0023 Score=53.44 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=44.5
Q ss_pred ccccCCcccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCC
Q 044387 129 RVELPEELYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLND 201 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~ 201 (446)
...+|..+. ++|++|+|++ ..+. +..+..+++|++|+|++..+..-. ...+.+++.|+.|+|+++...
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNN--NQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCCcC--CCCcEEEeCC--CCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccc
Confidence 345665543 6788888888 4333 224567888888888888776521 234566788888888877643
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.42 E-value=0.0013 Score=55.91 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=57.2
Q ss_pred CceEEEEEecCCCccccCCc--ccccCcccEEEEeceeEeec---CCCCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 116 NAREIELYLDQNHRVELPEE--LYTSVSVEVLKLMSDFVIKV---PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
.+++|.+... ....++.. +...++|++|+|++ ..+. +..+..+++|++|+|++..+.+-. ...+.+.+.|
T Consensus 30 ~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKR--NQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTC
T ss_pred CCCEEECCCC--cCCccCCccccccCCCCCEEECCC--CCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCC
Confidence 5666666543 23345442 44689999999999 4443 345678999999999999887642 2346678999
Q ss_pred ceeEEEeecCC
Q 044387 191 EELSIQAYLND 201 (446)
Q Consensus 191 e~L~l~~~~~~ 201 (446)
+.|+++++...
T Consensus 105 ~~L~L~~N~l~ 115 (192)
T 1w8a_A 105 KTLNLYDNQIS 115 (192)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 99999998653
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.40 E-value=0.0015 Score=65.72 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec-CCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 115 RNAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV-PAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.+++.|.+..+. ...+|..+..+++|+.|+|++ +.+. .|....+++|++|+|+++.+.+-.....+.++|.|+.|
T Consensus 463 ~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~--N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNR--LRALPPALAALRCLEVLQASD--NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSC--CCCCCGGGGGCTTCCEEECCS--SCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccc--ccccchhhhcCCCCCEEECCC--CCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 478888886643 347888888899999999999 5443 35677899999999999988764224557889999999
Q ss_pred EEEeecCC
Q 044387 194 SIQAYLND 201 (446)
Q Consensus 194 ~l~~~~~~ 201 (446)
.+.++...
T Consensus 539 ~L~~N~l~ 546 (567)
T 1dce_A 539 NLQGNSLC 546 (567)
T ss_dssp ECTTSGGG
T ss_pred EecCCcCC
Confidence 99998754
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.00087 Score=62.42 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCCceEEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccce-eEEEEecccchhHHHHH
Q 044387 261 LNSLTDVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQ-HLEVAVGAIGWAVLPVI 339 (446)
Q Consensus 261 ~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~-~L~l~~~~~~~~~l~~l 339 (446)
+++|+.+++...... ... ...+.++++|+.+.+..+ +..+ ....+..+.+|+ .+.+...-... -...
T Consensus 225 ~~~L~~l~L~~n~i~--~I~----~~aF~~~~~L~~l~l~~n-i~~I---~~~aF~~~~~L~~~l~l~~~l~~I--~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIP----DFTFAQKKYLLKIKLPHN-LKTI---GQRVFSNCGRLAGTLELPASVTAI--EFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCC--EEC----TTTTTTCTTCCEEECCTT-CCEE---CTTTTTTCTTCCEEEEECTTCCEE--CTTT
T ss_pred cCCCeEEECCCCCcc--eec----HhhhhCCCCCCEEECCcc-ccee---hHHHhhCChhccEEEEEcccceEE--chhh
Confidence 677777776431111 011 123677888999988765 2222 233445556777 77774311000 0123
Q ss_pred HhcCCCCcEEEEEecc
Q 044387 340 LSSSQNLQSLILRKQS 355 (446)
Q Consensus 340 L~~~p~L~~L~i~~~~ 355 (446)
+..|++|+++++....
T Consensus 293 F~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTTCTTEEEEEECSSC
T ss_pred hhCCccCCEEEeCCCc
Confidence 5789999999875544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.28 E-value=0.0006 Score=64.73 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=45.7
Q ss_pred hccCceEEEEEchhHHhhhcc-cccccCccccceeEEEEecccc---hhHHHHHHhcCCCCcEEEEEeccc
Q 044387 290 RLNNTKNLTVSYGVLCALDHA-YHIWFPALSHLQHLEVAVGAIG---WAVLPVILSSSQNLQSLILRKQSR 356 (446)
Q Consensus 290 ~l~~l~~L~l~~~~~~~~~~~-~~~~~p~~~~L~~L~l~~~~~~---~~~l~~lL~~~p~L~~L~i~~~~~ 356 (446)
..++++.|.++.+.+...... ....+...++|++|+|+.+... ...+...++.+++|++|++..+.-
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 456788888887655331111 1223345678999999877653 345667788899999999998763
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.26 E-value=0.003 Score=59.12 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=62.1
Q ss_pred ccccCCcccccCcccEEEEec-eeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCe
Q 044387 129 RVELPEELYTSVSVEVLKLMS-DFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTT 206 (446)
Q Consensus 129 ~~~lp~~l~~~~~L~~L~L~~-~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~ 206 (446)
...+|. +..+++|+.|+|++ +.. .++...+..+++|+.|+|++..+..- ....+.+++.|+.|+|+++....+..-
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 456777 66788899999974 322 33334567889999999999887653 233567789999999998876433221
Q ss_pred EEEeecCCcceEEEeeec
Q 044387 207 KFVISSSTLKRCTLWVAT 224 (446)
Q Consensus 207 ~~~i~~~~L~~L~l~~~~ 224 (446)
. ....+|+.|.+.++.
T Consensus 99 ~--~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 T--VQGLSLQELVLSGNP 114 (347)
T ss_dssp T--TCSCCCCEEECCSSC
T ss_pred H--cccCCceEEEeeCCC
Confidence 1 222348888887764
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.11 E-value=0.0011 Score=68.67 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=66.9
Q ss_pred CceEEEEEecCCCccccCCcccccCcccEEEEeceeEeec-CC-CCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELYTSVSVEVLKLMSDFVIKV-PA-GGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~l~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
.++.|.+.. .....+|..++.+++|++|+|++ +.+. .| ....+++|++|+|+++.+.. +-.-+.+++.|+.|
T Consensus 225 ~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 225 LWHALDLSN--LQIFNISANIFKYDFLTRLYLNG--NSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYF 298 (727)
T ss_dssp CCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTT--SCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEE
T ss_pred CCcEEECCC--CCCCCCChhhcCCCCCCEEEeeC--CcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEE
Confidence 455555543 33346777788888888888888 4433 23 35678888888888887762 33446678888888
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecc
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATE 225 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~ 225 (446)
.|.+|....+.. . +-..++|+.|.+.++..
T Consensus 299 ~L~~N~l~~lp~-~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 299 YFFDNMVTTLPW-E-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ECCSSCCCCCCS-S-TTSCTTCCCEECTTSCC
T ss_pred ECCCCCCCccCh-h-hhcCCCccEEeCCCCcc
Confidence 888886542211 1 03456788888887754
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.69 E-value=0.0043 Score=52.37 Aligned_cols=59 Identities=19% Similarity=0.044 Sum_probs=32.0
Q ss_pred cCcccEEEEeceeEeecCCC-------CccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEE--Eeec
Q 044387 139 SVSVEVLKLMSDFVIKVPAG-------GTSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSI--QAYL 199 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~~-------~~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l--~~~~ 199 (446)
+++|++|+|++ +.+.+.+ ....++|++|+|+++.+.+.+ +...+..++.|++|+| .++.
T Consensus 64 ~~~L~~L~Ls~--n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 64 NTYVKKFSIVG--TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCSCCEEECTT--SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCCcCEEECcC--CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 45566666666 4443321 123355666666666666554 4455555666666666 4443
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.60 E-value=0.0014 Score=68.00 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=68.2
Q ss_pred CCcccccCcccEEEEeceeEeecC--CCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEe
Q 044387 133 PEELYTSVSVEVLKLMSDFVIKVP--AGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVI 210 (446)
Q Consensus 133 p~~l~~~~~L~~L~L~~~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i 210 (446)
|..+..++.|+.|+|++ +.+.. +....+++|++|+|+++.+.. +-.-+.+++.|+.|+|++|....+.. . +.
T Consensus 217 ~~~~~~l~~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~-~-~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSN--LQIFNISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPA-E-LG 290 (727)
T ss_dssp -----CCCCCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSCCS-S-GG
T ss_pred hhhhccCCCCcEEECCC--CCCCCCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCccCh-h-hc
Confidence 33444588899999998 54432 345688999999999988873 44456788999999999887542211 1 02
Q ss_pred ecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecc
Q 044387 211 SSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDI 252 (446)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 252 (446)
..++|+.|.+.++... .. ..-.-..++|+.|.++++.
T Consensus 291 ~l~~L~~L~L~~N~l~-~l----p~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TL----PWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGTTCSEEECCSSCCC-CC----CSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCEEECCCCCCC-cc----ChhhhcCCCccEEeCCCCc
Confidence 4567888888877322 11 0001234677777776654
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.06 E-value=0.022 Score=47.30 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=57.1
Q ss_pred CCceEEEEEecCCCccccCC-cccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPE-ELYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..++.|.+.... ...++. .+..+++|+.|+|++ ..+.. + .+..+++|++|+|++..+..- -...+..+++|
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~--N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNS--NKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCC--CCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCC
Confidence 467777765532 344544 344589999999999 54443 2 246899999999999987642 23346778999
Q ss_pred ceeEEEeecC
Q 044387 191 EELSIQAYLN 200 (446)
Q Consensus 191 e~L~l~~~~~ 200 (446)
+.|.+.++..
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999998864
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.03 E-value=0.023 Score=47.01 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCceEEEEEecCCCccccCCc-ccccCcccEEEEeceeEeecC--C-CCccCCcccEEEeeeecCCchhhhhhhhcCCcc
Q 044387 115 RNAREIELYLDQNHRVELPEE-LYTSVSVEVLKLMSDFVIKVP--A-GGTSFPNVKILSVQLESPENSLTEKLFCSCPAL 190 (446)
Q Consensus 115 ~~v~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~l~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~L 190 (446)
..++.|.+... ....++.. +..+++|++|+|++ ..+.. + .+..+++|++|+|++..+..- ....+..+++|
T Consensus 30 ~~l~~L~L~~N--~i~~~~~~~~~~l~~L~~L~Ls~--N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDN--NQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEcCCC--cCCccChhhhcCcccCCEEECCC--CCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCC
Confidence 35666666543 23445443 44588999999998 44432 2 356889999999999987652 22346778999
Q ss_pred ceeEEEeecC
Q 044387 191 EELSIQAYLN 200 (446)
Q Consensus 191 e~L~l~~~~~ 200 (446)
+.|.|.++..
T Consensus 105 ~~L~L~~N~~ 114 (170)
T 3g39_A 105 THIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeCCCCC
Confidence 9999988764
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.35 E-value=0.0093 Score=57.06 Aligned_cols=103 Identities=5% Similarity=-0.004 Sum_probs=51.1
Q ss_pred CceEEEeeecc--cCcEEEecCCCceEEEEEEEeCccc---cCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccC
Q 044387 242 SLERLHIMSDI--FGKFVVHDLNSLTDVILDIVYGEWS---RVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFP 316 (446)
Q Consensus 242 ~L~~L~l~~~~--~~~~~~~~~p~L~~~~l~~~~~~~~---~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p 316 (446)
+|+++.+.... .....+.++++|+.+.+........ ... ...+.++++|+.+.+... +..+ ....+.
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~----~~aF~~c~~L~~l~l~~~-i~~I---~~~aF~ 320 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH----PYCLEGCPKLARFEIPES-IRIL---GQGLLG 320 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC----TTTTTTCTTCCEECCCTT-CCEE---CTTTTT
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC----HHHhhCCccCCeEEeCCc-eEEE---hhhhhc
Confidence 56666553211 0122345677777777643211100 001 123667788888887632 2222 123344
Q ss_pred ccccceeEEEEecccchhHHHHHHhcCCCCcEEEEEecc
Q 044387 317 ALSHLQHLEVAVGAIGWAVLPVILSSSQNLQSLILRKQS 355 (446)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~l~~lL~~~p~L~~L~i~~~~ 355 (446)
.+.+|+.+.+.-.-... . ...+.+| +|+++.+....
T Consensus 321 ~c~~L~~l~lp~~l~~I-~-~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 321 GNRKVTQLTIPANVTQI-N-FSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCCSCCEEEECTTCCEE-C-TTSSSSS-CCCEEEECCSS
T ss_pred CCCCccEEEECccccEE-c-HHhCCCC-CCCEEEEcCCC
Confidence 55677777773211000 0 1124677 88888888765
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.01 E-value=0.042 Score=50.82 Aligned_cols=34 Identities=3% Similarity=-0.171 Sum_probs=14.4
Q ss_pred cCcccEEEEece-eEeecCCCCccCCcccEEEeee
Q 044387 139 SVSVEVLKLMSD-FVIKVPAGGTSFPNVKILSVQL 172 (446)
Q Consensus 139 ~~~L~~L~L~~~-~~~l~~~~~~~~~~L~~L~L~~ 172 (446)
|++|+.|+|.++ +-.++...+.++++|++|.|..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 444555554441 1123333344444455554443
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.74 E-value=0.039 Score=52.67 Aligned_cols=213 Identities=10% Similarity=0.101 Sum_probs=117.8
Q ss_pred CceEEEEEecCCCccccCCcccc-cCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEELYT-SVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
+++++.+.. ....++...|. |.+|+.++|..+.. .++...+ .+.+|+.+.|... +..= -...+.+|+.|+.+
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLPVT-LKEI-GSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECCTT-CCEE-CTTTTTTCTTCCCE
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeCCc-hhee-hhhHhhCCCCCCEE
Confidence 566665532 22445555565 99999999986222 3333333 4689999988643 1110 23457789999999
Q ss_pred EEEeecCCCCCCeEEEeecCCcceEEEeeecccccccccceeEEEecCCceEEEeeecccC--------cEEEecCCCce
Q 044387 194 SIQAYLNDEGPTTKFVISSSTLKRCTLWVATEGEMFTQAEYKVRITAPSLERLHIMSDIFG--------KFVVHDLNSLT 265 (446)
Q Consensus 194 ~l~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--------~~~~~~~p~L~ 265 (446)
.+...-.. +..-. ....+|+.+.+.+. .. .. .......+++|+++.+.+.... ...+.++++|+
T Consensus 232 ~l~~~l~~-I~~~a--F~~~~L~~i~lp~~-i~-~I---~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 232 EIPENVST-IGQEA--FRESGITTVKLPNG-VT-NI---ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp ECCTTCCE-ECTTT--TTTCCCSEEEEETT-CC-EE---CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred ecCCCccC-ccccc--cccCCccEEEeCCC-cc-EE---ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 98753110 11111 22356888887432 10 00 0011224678999988764321 22356788898
Q ss_pred EEEEEEEeCccccCChhhHHHHHHhccCceEEEEEchhHHhhhcccccccCccccceeEEEEecccchhHHHHHHhcCC-
Q 044387 266 DVILDIVYGEWSRVDPNRAIQLLQRLNNTKNLTVSYGVLCALDHAYHIWFPALSHLQHLEVAVGAIGWAVLPVILSSSQ- 344 (446)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~lL~~~p- 344 (446)
.+.+.- ...... ...+.++++|+.+.|... +..+ ....+..+ +|+.+.+........ ....+..+|
T Consensus 304 ~l~l~~---~i~~I~----~~aF~~c~~L~~l~lp~~-l~~I---~~~aF~~~-~L~~l~l~~n~~~~l-~~~~F~~~~~ 370 (401)
T 4fdw_A 304 RFEIPE---SIRILG----QGLLGGNRKVTQLTIPAN-VTQI---NFSAFNNT-GIKEVKVEGTTPPQV-FEKVWYGFPD 370 (401)
T ss_dssp EECCCT---TCCEEC----TTTTTTCCSCCEEEECTT-CCEE---CTTSSSSS-CCCEEEECCSSCCBC-CCSSCCCSCT
T ss_pred eEEeCC---ceEEEh----hhhhcCCCCccEEEECcc-ccEE---cHHhCCCC-CCCEEEEcCCCCccc-ccccccCCCC
Confidence 887641 111111 123678899999999653 2221 23345556 889888865432100 011234564
Q ss_pred CCcEEEEEecc
Q 044387 345 NLQSLILRKQS 355 (446)
Q Consensus 345 ~L~~L~i~~~~ 355 (446)
++++|++....
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 78888887654
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=88.68 E-value=0.31 Score=45.18 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCccccCCc-ccccCcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCcccee
Q 044387 116 NAREIELYLDQNHRVELPEE-LYTSVSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEEL 193 (446)
Q Consensus 116 ~v~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L 193 (446)
++++|.+... .....+|.. +..+++|+.|+|+++.. .+.+..+..+++|+.|+|++..+..-. ..++...+ |+.|
T Consensus 32 ~L~~L~l~~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l 108 (347)
T 2ifg_A 32 NLTELYIENQ-QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQEL 108 (347)
T ss_dssp CCSEEECCSC-SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEE
T ss_pred CeeEEEccCC-CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEE
Confidence 4666666420 122345543 34578888888888322 222234567888888888888776422 12233333 8888
Q ss_pred EEEeecC
Q 044387 194 SIQAYLN 200 (446)
Q Consensus 194 ~l~~~~~ 200 (446)
.|.++..
T Consensus 109 ~l~~N~~ 115 (347)
T 2ifg_A 109 VLSGNPL 115 (347)
T ss_dssp ECCSSCC
T ss_pred EeeCCCc
Confidence 8877654
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.32 E-value=0.13 Score=43.53 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=14.6
Q ss_pred hHHHHHHhcCCCCcEEEEEec
Q 044387 334 AVLPVILSSSQNLQSLILRKQ 354 (446)
Q Consensus 334 ~~l~~lL~~~p~L~~L~i~~~ 354 (446)
..+...|+.-+.|++|.++..
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhCCCcCeEeccCC
Confidence 456777777778877777543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.43 E-value=0.21 Score=44.49 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=37.1
Q ss_pred CceEEEEEecCCC-ccccCCcccccCcccEEEEeceeEeecCC-CCccCC--cccEEEeeeecCCc----h-h-hhhhhh
Q 044387 116 NAREIELYLDQNH-RVELPEELYTSVSVEVLKLMSDFVIKVPA-GGTSFP--NVKILSVQLESPEN----S-L-TEKLFC 185 (446)
Q Consensus 116 ~v~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~l~~~-~~~~~~--~L~~L~L~~~~~~~----~-~-l~~lls 185 (446)
.++.|.+..+.-. ...+|..+..+++|+.|+|++ ..+... ....+. +|++|+|.+..+.+ . . ...++.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~--N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG--NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT--SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC--CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 5565555432211 112333334466666666666 333321 122222 66666666666543 1 1 344556
Q ss_pred cCCccceeE
Q 044387 186 SCPALEELS 194 (446)
Q Consensus 186 ~cp~Le~L~ 194 (446)
.+|.|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 666666553
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.39 E-value=0.14 Score=45.69 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=26.9
Q ss_pred cCCcccEEEeeeecCCchh-hhhhhhcCCccceeEEEeecCC
Q 044387 161 SFPNVKILSVQLESPENSL-TEKLFCSCPALEELSIQAYLND 201 (446)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~-l~~lls~cp~Le~L~l~~~~~~ 201 (446)
.+++|++|+|++..+.+-. +..++..+|+|+.|.|+++...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4667777777777766532 5556667777777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.40 E-value=0.58 Score=39.42 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred cCcccEEEEeceeEeecCCCC-------ccCCcccEEEeeeecCCchh---hhhhhhcCCccceeEEEee
Q 044387 139 SVSVEVLKLMSDFVIKVPAGG-------TSFPNVKILSVQLESPENSL---TEKLFCSCPALEELSIQAY 198 (446)
Q Consensus 139 ~~~L~~L~L~~~~~~l~~~~~-------~~~~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~~ 198 (446)
..+|+.|+|++ +.+.+.+. ..-+.|++|+|++..+.+.+ +.+.+...+.|++|.|.++
T Consensus 69 N~~L~~L~L~~--n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLAN--TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTT--SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccC--CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34566666666 44443221 13345666666666666554 4444444555666666543
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=68.78 E-value=4.9 Score=37.72 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=51.3
Q ss_pred ccCcccEEEEeceeEeecCCCCccCCcccEEEeeee--cCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCc
Q 044387 138 TSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLE--SPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTL 215 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~--~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L 215 (446)
.|..|+.+.+....-.+....+.++.+|+++.|... .+. ...+.+|.+|+.+.+-..- .....-.| ..+.+|
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~C~~L~~i~ip~sv-~~I~~~aF-~~C~~L 359 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQIL----DDAFAGCEQLERIAIPSSV-TKIPESAF-SNCTAL 359 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC----TTTTTTCTTCCEEEECTTC-CBCCGGGG-TTCTTC
T ss_pred cccccccccCCCcccccCceeecCCCCcCEEEeCCcccEeh----HhHhhCCCCCCEEEECccc-CEEhHhHh-hCCCCC
Confidence 488899988876444566667778889999888532 122 2346789999999885431 11111111 356788
Q ss_pred ceEEEeee
Q 044387 216 KRCTLWVA 223 (446)
Q Consensus 216 ~~L~l~~~ 223 (446)
+.+.+...
T Consensus 360 ~~i~~~~~ 367 (394)
T 4gt6_A 360 NNIEYSGS 367 (394)
T ss_dssp CEEEESSC
T ss_pred CEEEECCc
Confidence 88887754
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.34 E-value=8 Score=36.21 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=63.2
Q ss_pred ccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcce
Q 044387 138 TSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLKR 217 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~ 217 (446)
.|..|+.+.+......+....+..+++|+.+.+..- +..= -...+.+|++|+.+.+...-.. ...-.| ..+.+|+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~v~~-I~~~aF-~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITEL-PESVFAGCISLKSIDIPEGITQ-ILDDAF-AGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEECCTTCCE-ECTTTT-TTCTTCCE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCc-cccc-CceeecCCCCcCEEEeCCcccE-ehHhHh-hCCCCCCE
Confidence 489999999877444556666778999999988532 1100 1345778999999998642100 001010 24578888
Q ss_pred EEEeeecccccccccceeEEEecCCceEEEeeec
Q 044387 218 CTLWVATEGEMFTQAEYKVRITAPSLERLHIMSD 251 (446)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~ 251 (446)
+.+-.. .. .. ......++++|+++.+.+.
T Consensus 339 i~ip~s-v~-~I---~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPSS-VT-KI---PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECTT-CC-BC---CGGGGTTCTTCCEEEESSC
T ss_pred EEECcc-cC-EE---hHhHhhCCCCCCEEEECCc
Confidence 888432 10 00 0011234689999988764
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=56.31 E-value=6.2 Score=36.99 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=54.5
Q ss_pred cCCccc-ccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEe
Q 044387 132 LPEELY-TSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVI 210 (446)
Q Consensus 132 lp~~l~-~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i 210 (446)
++...| .|.+|+.+.+....-.+....+..+++|+++.|... +..= =...+.+|.+|+.+.+...- .....-.| .
T Consensus 288 i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~c~~L~~i~lp~~l-~~I~~~aF-~ 363 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEI-GKRSFRGCTSLSNINFPLSL-RKIGANAF-Q 363 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCEECCCTTC-CEECTTTB-T
T ss_pred eccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEE-hHHhccCCCCCCEEEECccc-cEehHHHh-h
Confidence 344444 489999999877433566667778999999988532 1110 12446789999999885431 10111110 3
Q ss_pred ecCCcceEEEeee
Q 044387 211 SSSTLKRCTLWVA 223 (446)
Q Consensus 211 ~~~~L~~L~l~~~ 223 (446)
.+++|+.+.+-..
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 4678999888643
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=39.05 E-value=14 Score=28.46 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred CcccEEEEeceeE-eecCCCCccCCcccEEEeeeecCCc
Q 044387 140 VSVEVLKLMSDFV-IKVPAGGTSFPNVKILSVQLESPEN 177 (446)
Q Consensus 140 ~~L~~L~L~~~~~-~l~~~~~~~~~~L~~L~L~~~~~~~ 177 (446)
++|+.|+|+++.. .++...+..+++|++|+|.+..+.-
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 3578888887322 2222345567778888887776653
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=38.32 E-value=24 Score=32.88 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=45.9
Q ss_pred ccCCcccc-cCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEee
Q 044387 131 ELPEELYT-SVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAY 198 (446)
Q Consensus 131 ~lp~~l~~-~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~ 198 (446)
.++...|. |.+|+.+.|....-.+....+.++.+|+.+.|... +..= -...+.+|++|+.+.+...
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCC
Confidence 34445554 89999999976433566667788999999988543 1110 1335778999999999764
No 168
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=37.59 E-value=15 Score=19.36 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCccccce
Q 044387 393 DELILVDYLLKYSSVLEVM 411 (446)
Q Consensus 393 ~~~~l~~~ll~~a~~Le~m 411 (446)
.-..++.|+++|.|+++-+
T Consensus 7 lpsdimdfvlkntpsmqal 25 (31)
T 2agh_C 7 LPSDIMDFVLKNTPSMQAL 25 (31)
T ss_dssp SCHHHHHHHHHHSCCCCCC
T ss_pred ChHHHHHHHHhCChhHHHH
Confidence 3447889999999988754
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=35.30 E-value=26 Score=32.32 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=31.6
Q ss_pred ccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEe
Q 044387 138 TSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQA 197 (446)
Q Consensus 138 ~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~ 197 (446)
.|.+|+.+.+......+....+..+..|+.+.+... +..- -...+.+|..|+.+.+..
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECC
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCCC-ccEe-Cccccceeehhccccccc
Confidence 366777777665323444445566777777776432 1100 122355677777777643
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=35.15 E-value=35 Score=31.35 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=48.5
Q ss_pred cccCcccEEEEeceeEeecCCCCccCCcccEEEeeeecCCchhhhhhhhcCCccceeEEEeecCCCCCCeEEEeecCCcc
Q 044387 137 YTSVSVEVLKLMSDFVIKVPAGGTSFPNVKILSVQLESPENSLTEKLFCSCPALEELSIQAYLNDEGPTTKFVISSSTLK 216 (446)
Q Consensus 137 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~ 216 (446)
+.|..|+.+.+....-.+....+..+.+|+.+.+..- +..- -...+.+|++|+.+.+..+.......-.| ..+.+|+
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVF-MDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTT-TTCTTCC
T ss_pred cCCccceEEEcCCCccEeCccccceeehhcccccccc-ceec-cccccccccccccccccccccceehhhhh-cCCCCCC
Confidence 3488898888876433555566677888888887532 1110 12346788999988887543211111010 2456777
Q ss_pred eEEEe
Q 044387 217 RCTLW 221 (446)
Q Consensus 217 ~L~l~ 221 (446)
.+.+-
T Consensus 314 ~i~lp 318 (379)
T 4h09_A 314 SVTLP 318 (379)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 77764
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.67 E-value=37 Score=24.62 Aligned_cols=18 Identities=6% Similarity=0.349 Sum_probs=8.9
Q ss_pred cCCcccc-cCcccEEEEec
Q 044387 132 LPEELYT-SVSVEVLKLMS 149 (446)
Q Consensus 132 lp~~l~~-~~~L~~L~L~~ 149 (446)
+....|. |.+|+.+.|-.
T Consensus 11 I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT
T ss_pred ecHHHhcCCCCCcEEEcCC
Confidence 3333443 56666555544
Done!