BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044388
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 174/391 (44%), Gaps = 68/391 (17%)
Query: 146 APVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRV 205
PVF PT E+F+D Y +I G+ +++PP WK L S+ + ++
Sbjct: 14 VPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPY-----SAETLQKI 68
Query: 206 QRVDKLQNRNSMRKVXXXXXXXXXXXXXXXXMAVDCGSD--------------SGNVSAS 251
+ +Q S K D D G+VS S
Sbjct: 69 KIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKS 128
Query: 252 GDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANTAVLEEHWEPL 311
+ E +F ++ F++ F+ +Y + D +D + NT L+
Sbjct: 129 TKLKLKNFES-------SFNIDDFEQ----FRTEY-TIDLSDFQ----NTERLK------ 166
Query: 312 VENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNN 371
+E YW+ + T +YGAD GS FP+ LN WN+
Sbjct: 167 --FLEEYYWKTLNFTTP----MYGADTP----GSIFPEGLNV-------------WNVAK 203
Query: 372 FPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
P ++L + + GV +LY G+ +SF WH+ED LYS+NY+H+GAPK WY +P
Sbjct: 204 LP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIP 259
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+D K + M++ + + P+ L + SP +L+ G+ V + GEF++T+P
Sbjct: 260 QEDRFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYP 319
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
YH+GFN G+N AE+VN A +WLP G+ A
Sbjct: 320 YGYHAGFNYGYNLAESVNFALEEWLPIGKKA 350
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 21/210 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E++E +YW K + +YGAD+ ++ G DE WN+
Sbjct: 118 EDLERKYW----KNLTFVAPIYGADINGSIYDEGV-----------DE------WNIARL 156
Query: 373 PRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPG 432
+ V I GV P+LY GM ++F WH ED LYS+NY+H+G PK WY +P
Sbjct: 157 NTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPP 216
Query: 433 KDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPR 492
+ +LE + + L +T +SPS+LK G+P + Q AGEF++TFP
Sbjct: 217 EHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPY 276
Query: 493 AYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
YH+GFN GFNCAE+ N A V W+ +G++A
Sbjct: 277 GYHAGFNHGFNCAESTNFATVRWIDYGKVA 306
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
F P+ EEF++ KY+A + K A G+ +++PP WKP
Sbjct: 19 TFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKP 58
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 27/213 (12%)
Query: 313 ENIEGEYW--RIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLN 370
E++E +YW RI +YGAD+ GS F + Q WNL
Sbjct: 119 EDLERKYWKNRIYNSP------IYGADIS----GSLFDENTKQ-------------WNLG 155
Query: 371 NFPRLPGSVLSYESGD-ISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYG 429
+ + +L E G I GV P+LY GM ++F WH ED LYS+NY+H G PK WY
Sbjct: 156 HLGTIQ-DLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYV 214
Query: 430 VPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLT 489
VP + +LE R+ L V +SP++LK G+P R Q AGEF++T
Sbjct: 215 VPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVT 274
Query: 490 FPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
FP YH+GFN GFNCAEA+N A W+ +G++A
Sbjct: 275 FPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 307
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWK 185
+F+PT+EEF D KYIA + + A G+ +I+PP WK
Sbjct: 20 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 58
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 27/213 (12%)
Query: 313 ENIEGEYW--RIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLN 370
E++E +YW RI +YGAD+ GS F + Q WNL
Sbjct: 112 EDLERKYWKNRIYNSP------IYGADIS----GSLFDENTKQ-------------WNLG 148
Query: 371 NFPRLPGSVLSYESGD-ISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYG 429
+ + +L E G I GV P+LY GM ++F WH ED LYS+NY+H G PK WY
Sbjct: 149 HLGTIQ-DLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYV 207
Query: 430 VPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLT 489
VP + +LE R+ L V +SP++LK G+P R Q AGEF++T
Sbjct: 208 VPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVT 267
Query: 490 FPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
FP YH+GFN GFNCAEA+N A W+ +G++A
Sbjct: 268 FPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 300
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWK 185
+F+PT+EEF D KYIA + + A G+ +I+PP WK
Sbjct: 13 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 51
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 27/213 (12%)
Query: 313 ENIEGEYW--RIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLN 370
E++E +YW RI +YGAD+ GS F + Q WNL
Sbjct: 108 EDLERKYWKNRIYNSP------IYGADIS----GSLFDENTKQ-------------WNLG 144
Query: 371 NFPRLPGSVLSYESGD-ISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYG 429
+ + +L E G I GV P+LY GM ++F WH ED LYS+NY+H G PK WY
Sbjct: 145 HLGTIQ-DLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYV 203
Query: 430 VPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLT 489
VP + +LE R+ L V +SP++LK G+P R Q AGEF++T
Sbjct: 204 VPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVT 263
Query: 490 FPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
FP YH+GFN GFNCAEA+N A W+ +G++A
Sbjct: 264 FPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWK 185
+F+PT+EEF D KYIA + + A G+ +I+PP WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 27/213 (12%)
Query: 313 ENIEGEYW--RIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLN 370
E++E +YW RI +YGAD+ GS F + Q WNL
Sbjct: 108 EDLERKYWKNRIYNSP------IYGADIS----GSLFDENTKQ-------------WNLG 144
Query: 371 NFPRLPGSVLSYESGD-ISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYG 429
+ + +L E G I GV P+LY GM ++F WH ED LYS+NY+H G PK WY
Sbjct: 145 HLGTIQ-DLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYV 203
Query: 430 VPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLT 489
VP + +LE R+ L V +SP++LK G+P R Q AGEF++T
Sbjct: 204 VPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVT 263
Query: 490 FPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522
FP YH+GFN GFNCAEA+N A W+ +G++A
Sbjct: 264 FPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWK 185
+F+PT+EEF D KYIA + + A G+ +I+PP WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 284 AQYFSRDKNDAKGLGANTAVLEEHWEPLVEN---IEGEYWRIVEKATEEIEVLYGADLET 340
QY + K G A +++ P +N +E YW K+ +YGAD+
Sbjct: 106 TQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYW----KSHPGNPPIYGADIS- 160
Query: 341 CVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLSYESGD-ISGVLVPWLYIGM 399
GS F ++ Q WNL + + +L E G I GV P+LY GM
Sbjct: 161 ---GSLFEESTKQ-------------WNLGHLGTIL-DLLEQECGVVIEGVNTPYLYFGM 203
Query: 400 CFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHK 459
++F WH ED LYS+NY+H+G PK WY VP + LE R+ D+ L
Sbjct: 204 WKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRH 263
Query: 460 LVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHG 519
V +SP++LK G+P Q AGEF++TFP YH+GFN GFNCAEA+N A W+ +G
Sbjct: 264 KVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 323
Query: 520 QIA 522
++A
Sbjct: 324 KMA 326
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWK 185
FYPT EEF D Y+A + + A G+ +++PP WK
Sbjct: 39 TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 77
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E +E +YW+ + +YGAD V G+ + K +++ WN+
Sbjct: 137 EELERKYWKNLTFNPP----IYGAD----VNGTLYEKHVDE-------------WNIGRL 175
Query: 373 PRLPGSVLSYESG-DISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
R ++ ESG I GV P+LY GM +SF WH ED LYS+NY+H+G PK WY VP
Sbjct: 176 -RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVP 234
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+ +LE + + L +T +SP +LK G+P + Q AGEF++TFP
Sbjct: 235 PEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFP 294
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI 523
YH+GFN GFNCAE+ N A W+ +G+ A+
Sbjct: 295 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 326
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
FYPT EEF++ +YIA I + A G+ ++VPP WKP
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 77
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E +E +YW+ + +YGAD V G+ + K +++ WN+
Sbjct: 117 EELERKYWKNLTFNPP----IYGAD----VNGTLYEKHVDE-------------WNIGRL 155
Query: 373 PRLPGSVLSYESG-DISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
R ++ ESG I GV P+LY GM +SF WH ED LYS+NY+H+G PK WY VP
Sbjct: 156 -RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVP 214
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+ +LE + + L +T +SP +LK G+P + Q AGEF++TFP
Sbjct: 215 PEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFP 274
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI 523
YH+GFN GFNCAE+ N A W+ +G+ A+
Sbjct: 275 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 306
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
FYPT EEF++ +YIA I + A G+ ++VPP WKP
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 57
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E +E +YW+ + +YGAD+ G+ + K +++ WN+
Sbjct: 114 EELERKYWKNLTFNPP----IYGADVN----GTLYEKHVDE-------------WNIGRL 152
Query: 373 PRLPGSVLSYESG-DISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
R ++ ESG I GV P+LY GM +SF WH ED LYS+NY+H+G PK WY VP
Sbjct: 153 -RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVP 211
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+ +LE + + L +T +SP +LK G+P + Q AGEF++TFP
Sbjct: 212 PEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFP 271
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI 523
YH+GFN GFNCAE+ N A W+ +G+ A+
Sbjct: 272 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 303
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
FYPT EEF++ +YIA I + A G+ ++VPP WKP
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 54
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E +E +YW+ + +YGAD V G+ + K +++ WN+
Sbjct: 114 EELERKYWKNLTFNPP----IYGAD----VNGTLYEKHVDE-------------WNIGRL 152
Query: 373 PRLPGSVLSYESG-DISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
R ++ ESG I GV P+LY GM +SF WH ED LYS+NY+H+G PK WY VP
Sbjct: 153 -RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVP 211
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+ +LE + + L +T +SP +LK G+P + Q AGEF++TFP
Sbjct: 212 PEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFP 271
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI 523
YH+GFN GFNCAE+ N A W+ +G+ A+
Sbjct: 272 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 303
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
FYPT EEF++ +YIA I + A G+ ++VPP WKP
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 54
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 313 ENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNF 372
E +E +YW+ + +YGAD+ G+ + K +++ WN+
Sbjct: 109 EELERKYWKNLTFNPP----IYGADVN----GTLYEKHVDE-------------WNIGRL 147
Query: 373 PRLPGSVLSYESG-DISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVP 431
R ++ ESG I GV P+LY GM +SF WH ED LYS+NY+H+G PK WY VP
Sbjct: 148 -RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVP 206
Query: 432 GKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFP 491
+ +LE + + L +T +SP +LK G+P + Q AGEF++TFP
Sbjct: 207 PEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFP 266
Query: 492 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI 523
YH+GFN GFNCAE+ N A W+ +G+ A+
Sbjct: 267 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 148 VFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKP 186
FYPT EEF++ +YIA I + A G+ ++VPP WKP
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 49
>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 485
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 319 YWRIVEKATEEIEVL-YGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPG 377
Y VEK T ++ L YG + PKT+ VG +ER I+ + + G
Sbjct: 300 YDEFVEKFTARVKQLPYGDQTD--------PKTV--VGPLINERQIEKALEIIEQAKTDG 349
Query: 378 SVLSYESGDISGVLVPWLYIGMCFSSFCWHVE 409
L+ E + VL P++++G +S E
Sbjct: 350 IELAVEGKRVGNVLTPYVFVGADNNSKIAQTE 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,295,728
Number of Sequences: 62578
Number of extensions: 879530
Number of successful extensions: 1752
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1711
Number of HSP's gapped (non-prelim): 26
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)