Query 044388
Match_columns 717
No_of_seqs 290 out of 670
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958 DNA damage-responsive 100.0 6.5E-77 1.4E-81 662.7 17.3 311 142-541 11-322 (690)
2 KOG1246 DNA-binding protein ju 100.0 1.2E-73 2.7E-78 682.1 29.0 591 52-695 19-619 (904)
3 PF02373 JmjC: JmjC domain, hy 100.0 3.2E-33 7E-38 253.5 9.7 114 394-510 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 7E-20 1.5E-24 140.5 3.8 42 145-186 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 1.4E-16 3E-21 116.9 2.1 34 147-180 1-34 (34)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.5 3.5E-15 7.5E-20 120.9 4.0 54 617-670 1-54 (54)
7 smart00558 JmjC A domain famil 99.3 6.6E-13 1.4E-17 107.9 3.5 56 366-424 2-57 (57)
8 KOG1246 DNA-binding protein ju 98.5 4.8E-08 1E-12 118.8 3.4 178 364-549 604-790 (904)
9 PF13621 Cupin_8: Cupin-like d 96.8 0.0016 3.4E-08 66.4 5.0 110 392-513 132-248 (251)
10 KOG2131 Uncharacterized conser 96.5 0.0032 6.9E-08 68.8 5.4 103 394-512 201-303 (427)
11 KOG2130 Phosphatidylserine-spe 94.7 0.019 4.1E-07 61.9 2.4 131 377-517 166-303 (407)
12 KOG1356 Putative transcription 94.0 0.057 1.2E-06 64.5 4.7 113 425-538 740-859 (889)
13 PF08007 Cupin_4: Cupin superf 86.1 1.7 3.6E-05 47.5 6.7 104 390-518 113-217 (319)
14 smart00154 ZnF_AN1 AN1-like Zi 50.0 7.7 0.00017 29.7 0.8 33 617-651 1-35 (39)
15 COG1791 Uncharacterized conser 30.4 40 0.00087 34.2 2.6 41 473-518 114-161 (181)
16 COG2461 Uncharacterized conser 30.3 31 0.00068 39.0 2.0 44 143-188 197-240 (409)
17 TIGR03792 uncharacterized cyan 26.3 95 0.0021 28.3 4.0 48 428-490 7-54 (90)
18 PF06753 Bradykinin: Bradykini 26.2 31 0.00068 22.3 0.7 10 19-28 3-12 (19)
No 1
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=6.5e-77 Score=662.69 Aligned_cols=311 Identities=34% Similarity=0.663 Sum_probs=268.8
Q ss_pred CCCCCCccCCCHHhhhCHHHHHHHhhccc-ccCCceeecCCCCCCCCCCCCCCCCCCCCccccccchhhccccccccccc
Q 044388 142 DLEDAPVFYPTEEEFQDTLKYIASIRPKA-EPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKV 220 (717)
Q Consensus 142 ~l~e~PvF~PT~EEF~Dp~~YI~~I~~~a-~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr~Q~V~~L~~r~~~~~~ 220 (717)
...++||||||||||+||.+||++|+++| +++||+|||||++|+|+...++ .+++++++.+|++-..+
T Consensus 11 ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~d---i~di~I~~PiqQ~v~g~-------- 79 (690)
T KOG0958|consen 11 PSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYDD---IDDIKIPAPIQQVVTGQ-------- 79 (690)
T ss_pred CCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccCc---hhheecChhHHHHhhcc--------
Confidence 36799999999999999999999999996 5599999999999999876653 34677777777764321
Q ss_pred cccccccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhhcCCCCCCccCCCCC
Q 044388 221 SRIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGAN 300 (717)
Q Consensus 221 ~~~~~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~yf~~~~~~~~~~~~~ 300 (717)
.|++ ++++.+..+.|++.+|+++|+. .+|...+.
T Consensus 80 ---------------------------------~G~F--~~~Ni~~~kam~v~q~r~lAns--~~y~tpr~--------- 113 (690)
T KOG0958|consen 80 ---------------------------------GGLF--TQYNIQDKKAMTVRQFRDLANS--DKYCTPRG--------- 113 (690)
T ss_pred ---------------------------------CceE--EEeehhhccccChhhhhhhhhh--cccCCCcc---------
Confidence 2454 4566676789999999999998 34443331
Q ss_pred cccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccCCccCCCCCCCCCcC
Q 044388 301 TAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVL 380 (717)
Q Consensus 301 ~~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~~SlL 380 (717)
.-..+|+|++||+.+... .+.||||+.+++|..+ ...||+++|+...+-
T Consensus 114 --------~~d~~dle~kYWKnltf~----~PiYGaD~~gSi~~~~-----------------~~~WNi~~L~tild~-- 162 (690)
T KOG0958|consen 114 --------SQDFEDLEQKYWKNLTFD----SPIYGADINGSIYDED-----------------LDEWNIARLDTILDL-- 162 (690)
T ss_pred --------cccHHHHHHHHHhcccCC----CCcccccCCCccCccc-----------------ccccccccccchhch--
Confidence 135789999999999974 6999999997777644 568999999974321
Q ss_pred cCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhcc
Q 044388 381 SYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKL 460 (717)
Q Consensus 381 ~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~ 460 (717)
...+..|.||||||||+|||.++|+||+||++||||||+|||+||+||+||++|.++||+++.+.+|+....|++||+|+
T Consensus 163 ~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK 242 (690)
T KOG0958|consen 163 EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHK 242 (690)
T ss_pred hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHHHH
Q 044388 461 VTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKL 540 (717)
Q Consensus 461 ~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~L 540 (717)
+++++|.+|+++|||+++++|++||||||||++||+|||+||||+|++|||+++|++||+.|..+-+. ....-|||+.+
T Consensus 243 ~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~C~-~d~vkism~~f 321 (690)
T KOG0958|consen 243 MTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCSCR-SDSVKISMDPF 321 (690)
T ss_pred ccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccccc-cceeeeechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987663 23455677755
Q ss_pred H
Q 044388 541 L 541 (717)
Q Consensus 541 l 541 (717)
.
T Consensus 322 v 322 (690)
T KOG0958|consen 322 V 322 (690)
T ss_pred h
Confidence 4
No 2
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=1.2e-73 Score=682.15 Aligned_cols=591 Identities=42% Similarity=0.642 Sum_probs=458.0
Q ss_pred cccccccccccccccCchhhhhhcccccCCCCcccCCCCCCCCCcCcccccCCcccCCCCCCcccccCCCCCCCCccccc
Q 044388 52 ASASESLSVHMETEVKVADAAKAARPLRRRPGINYGLLDHSSEDESDSGKLGQNFTARPCLPKGVIRGCPTCSDCQKVTA 131 (717)
Q Consensus 52 ~s~~~~~~~~~~~~~~~~~~~~~~~~lr~rp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (717)
.++.++....|+..... ...++..+.+.+++|+-.. ++..+ +... ...++.+++-+ .
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~------~~~~~~~~~~~--------------~ 75 (904)
T KOG1246|consen 19 PDPIKSLYEFMENPPEA-FQLKALISTSLFRPIDSET-KEKKY-DNVS------IPSRRTLEVDF--------------Y 75 (904)
T ss_pred hhHHHHHHHHhcCCccc-cccccchhhccCCcccccc-ccccc-cccc------cccccccccch--------------h
Confidence 34445544455543332 2334444777888886555 44322 1111 22344444433 2
Q ss_pred ccCCCCCCCCCCCCCCccCCCHHhhhCHHHHHHHhhcccccCCceeecCCCCCCCCCCCCCCCCCCCCccccc-cchhhc
Q 044388 132 RWRPEDSCRPDLEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTR-VQRVDK 210 (717)
Q Consensus 132 ~~~p~~~~~~~l~e~PvF~PT~EEF~Dp~~YI~~I~~~a~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr-~Q~V~~ 210 (717)
.+.+..+.+......+.+.+....|.+...|+..++..++.+|+|.++||..|++++++..+..+...+|.++ +|.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (904)
T KOG1246|consen 76 SDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQREVEFIDY 155 (904)
T ss_pred hhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCcccccccc
Confidence 2444445566677788888888999999999999999999999999999999999999999888999999999 888887
Q ss_pred cccccccccccc----cccccccccccccccccccCCCCCCC-CCCCCCCC-cCCCccccccCC-CCCHHHHHHHHHHHH
Q 044388 211 LQNRNSMRKVSR----IHNHSRRKRRRSTRMAVDCGSDSGNV-SASGDVGC-YEDERFGFEPGP-AFTLNTFQKYADLFK 283 (717)
Q Consensus 211 L~~r~~~~~~~~----~~~~~k~k~~~~~~~~~d~~~~~~~~-~~~~~~g~-~~~~~fgf~~g~-~~tl~~F~~~A~~fk 283 (717)
.+.+...+.... .....+.+.......+.++..+..-. ..+..+.. .....+||.+|. +||+..|+++|+.|+
T Consensus 156 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~ 235 (904)
T KOG1246|consen 156 PQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFK 235 (904)
T ss_pred hhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhh
Confidence 766554433211 00111111122222222222211110 11111111 125778999875 999999999999999
Q ss_pred HhhcCCCCCCccCCCCCcccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCC-CCchhhh
Q 044388 284 AQYFSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVG-SASDERY 362 (717)
Q Consensus 284 ~~yf~~~~~~~~~~~~~~~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~-~~~~~~y 362 (717)
..||.+..+. .++.+++|++||++|......++|+||+|+.+..+|+|||....... ....++|
T Consensus 236 ~~~~~~~~~~---------------~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y 300 (904)
T KOG1246|consen 236 KDYFPKSKNS---------------PDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKY 300 (904)
T ss_pred ccccccccCC---------------CCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhh
Confidence 9999876431 23378999999999999989999999999999999999998632211 2466899
Q ss_pred hccCCccCCCCCCCCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHH
Q 044388 363 IKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAM 442 (717)
Q Consensus 363 ~~~~WNLnnLp~~~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~ 442 (717)
..++|||+|+|.+.+|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||+++
T Consensus 301 ~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~ 380 (904)
T KOG1246|consen 301 SNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAM 380 (904)
T ss_pred ccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHH
Q 044388 443 RKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIA 522 (717)
Q Consensus 443 ~~~~p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a 522 (717)
++..|+++..+|++++++.++++|..|..+|||+++++|+|||||||||++||+|||+|||++|+|||||.+||++|+.+
T Consensus 381 ~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~ 460 (904)
T KOG1246|consen 381 NKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGA 460 (904)
T ss_pred HhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhh-hccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 044388 523 IELYREQGRKTSISHDKLLLGAAREAVRAHWELNLL-KKNTSDNLRWKDFCGKDGILAKALKKRVDMERARREFLSSSSQ 601 (717)
Q Consensus 523 ~~~y~~~~~~~~~s~d~Ll~~~A~~~~~~~~e~~~l-~~~~~~~~~~~~~c~~~~~l~~~lk~~i~~E~~~re~l~~~~~ 601 (717)
+++|+...+.++|||++|++.+|...+...+.+.+. .++.....+|...+...+.....+... |+.+.+.+.
T Consensus 461 ~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---- 533 (904)
T KOG1246|consen 461 AEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESLP---- 533 (904)
T ss_pred HHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhcc----
Confidence 999999999999999999999999877655544331 122222223322222222222111111 222222221
Q ss_pred ccccccccCCcCcccccccccceeecccccccCCCceeehhchhhhCCCCCCceEEEEEcCHHHHHHHHHHHHHhhhhHH
Q 044388 602 TMKMESNFDATSERECSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVEALEGKLSAVY 681 (717)
Q Consensus 602 ~~k~~~~~d~~~~~~C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~~lC~C~~~~~~ll~Ry~~~EL~~l~~~l~~r~~~~~ 681 (717)
|+..+++|..|+++||++++.|+|.+.+..|+.|..++|+|+...++++|||++++|..++.+++.+...+.
T Consensus 534 --------~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~ 605 (904)
T KOG1246|consen 534 --------DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKL 605 (904)
T ss_pred --------chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcc
Confidence 223489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhc
Q 044388 682 RWARLDLGLALSSF 695 (717)
Q Consensus 682 ~W~~~~~~~~~~~~ 695 (717)
.|..++.+++.+..
T Consensus 606 ~~~~~~~~~~~~~~ 619 (904)
T KOG1246|consen 606 PWFGRVDGALPSLG 619 (904)
T ss_pred hhhhhhhhhhcccc
Confidence 99999998865543
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=100.00 E-value=3.2e-33 Score=253.46 Aligned_cols=114 Identities=49% Similarity=0.790 Sum_probs=100.9
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
|||+||.+|+++||+||+.++||||+|+|++|+||+||++++++|++++++. ...++++++.+...++.|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999987 3456888899999999999999999
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecc
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNV 510 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNF 510 (717)
||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.78 E-value=7e-20 Score=140.52 Aligned_cols=42 Identities=69% Similarity=1.408 Sum_probs=41.0
Q ss_pred CCCccCCCHHhhhCHHHHHHHhhcccccCCceeecCCCCCCC
Q 044388 145 DAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKP 186 (717)
Q Consensus 145 e~PvF~PT~EEF~Dp~~YI~~I~~~a~~yGIcKIVPP~~W~p 186 (717)
++||||||+|||+||+.||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999997
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.62 E-value=1.4e-16 Score=116.93 Aligned_cols=34 Identities=71% Similarity=1.368 Sum_probs=27.7
Q ss_pred CccCCCHHhhhCHHHHHHHhhcccccCCceeecC
Q 044388 147 PVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVP 180 (717)
Q Consensus 147 PvF~PT~EEF~Dp~~YI~~I~~~a~~yGIcKIVP 180 (717)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.54 E-value=3.5e-15 Score=120.94 Aligned_cols=54 Identities=48% Similarity=0.918 Sum_probs=52.2
Q ss_pred ccccccceeecccccccCCCceeehhchhhhCCCCCCceEEEEEcCHHHHHHHH
Q 044388 617 CSVCLFDLHLSAVGCHCSSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILV 670 (717)
Q Consensus 617 C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~~lC~C~~~~~~ll~Ry~~~EL~~l~ 670 (717)
|.+||++||||+|+|.|++++++||.|+.++|+|++++++|+|||+++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 899999999999999998999999999999999999999999999999999875
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.33 E-value=6.6e-13 Score=107.89 Aligned_cols=56 Identities=43% Similarity=0.615 Sum_probs=53.5
Q ss_pred CCccCCCCCCCCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCc
Q 044388 366 GWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAP 424 (717)
Q Consensus 366 ~WNLnnLp~~~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~Gap 424 (717)
.||++++|. .+++|+++..+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 699999999 88999999999999999999999999999999999999 999999863
No 8
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.51 E-value=4.8e-08 Score=118.80 Aligned_cols=178 Identities=22% Similarity=0.167 Sum_probs=145.2
Q ss_pred ccCCccCCCCCCC-----C-CcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHH
Q 044388 364 KSGWNLNNFPRLP-----G-SVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALK 437 (717)
Q Consensus 364 ~~~WNLnnLp~~~-----~-SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~k 437 (717)
..+|...-.-.++ + ++|.+....+.||++..+|+...++.+.-|.|+..+.++|.++..+.+.|++||.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4677665554433 4 888899999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHhhhhhhccchhhhhcccccc-ChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccc
Q 044388 438 LEEAMRKHLHDLFEEQPDLLHKLVTQL-SPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 516 (717)
Q Consensus 438 fE~l~~~~~p~~f~~~~d~L~~~~~~i-sP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl 516 (717)
+++++.+.- ..++-. ..|. +-..|...+|++++++|++|+++.++.+.|||....||..+-++|.+...--
T Consensus 684 ~~~~~~~~~-------~~~~~~-~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHN-------LKYSDS-SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhcc-------ccccch-hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 998887641 111211 2244 5578999999999999999999999999999999999999999999998754
Q ss_pred c--chhHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 044388 517 P--HGQIAIELYREQGRKTSISHDKLLLGAAREAV 549 (717)
Q Consensus 517 ~--~g~~a~~~y~~~~~~~~~s~d~Ll~~~A~~~~ 549 (717)
. .......+........++++..+-|++|+..+
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEKEV 790 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhcch
Confidence 3 33334444445577888999999999998743
No 9
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.78 E-value=0.0016 Score=66.44 Aligned_cols=110 Identities=20% Similarity=0.123 Sum_probs=66.7
Q ss_pred cceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhh----ccchhhhhccccccChh
Q 044388 392 VPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLF----EEQPDLLHKLVTQLSPS 467 (717)
Q Consensus 392 ~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f----~~~~d~L~~~~~~isP~ 467 (717)
..+|+||..+|.+.+|.+. ...++-+..|. |.|+-+||++...+... +..- -...++. ....-..|.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~-K~~~L~pP~~~~~l~~~-----~~~~~~~~~~~~d~~-~~d~~~~p~ 202 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRGR-KRWILFPPDDSPNLYPR-----PDSHGGTVFSWVDPD-NPDLERFPK 202 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEESE-EEEEEE-GGGGGGCTBE-----TTTST-TCBBSS-TT-S--TTT-CG
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCCC-EEEEEECCccccccccc-----eecccccceeeeecc-Chhhhhhhh
Confidence 4569999999999999887 45777777884 99999999987643111 1000 0000100 000011222
Q ss_pred hHHhCCCCeEEEecCCCcEEEEcCCcceeeecc---cccceeeecccCC
Q 044388 468 ILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNC---GFNCAEAVNVAPV 513 (717)
Q Consensus 468 ~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~---Gfn~aEAVNFA~~ 513 (717)
. ..++.+.++++|||.+++=+|-+|.+.|. ++|++..++|-+.
T Consensus 203 ~---~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 203 F---RKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp G---GG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred h---ccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 1 22389999999999999999999999999 4677777766554
No 10
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.54 E-value=0.0032 Score=68.77 Aligned_cols=103 Identities=21% Similarity=0.165 Sum_probs=77.5
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
-.|+|-.+|+++.|.+=-.-+|-.-+..| -|.|..+||++..++...... .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gn--------lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGN--------LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccC--------cC-------Cccccccccccc
Confidence 57999999999999766666666666677 699999999996655433211 11 112234566778
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecccC
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAP 512 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~ 512 (717)
.+.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N 303 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCN 303 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccc
Confidence 888999999999999999999999999999887665433
No 11
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=94.67 E-value=0.019 Score=61.87 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=87.6
Q ss_pred CCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhh
Q 044388 377 GSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDL 456 (717)
Q Consensus 377 ~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~ 456 (717)
+.|+.+++.. .-----|+-+|-..|-+.||++...+-.-|-+..| .|.|.-+|+.--..+-++. ++.-.+|++=
T Consensus 166 dDlF~y~g~e-~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~de 239 (407)
T KOG2130|consen 166 DDLFQYLGEE-RRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPDE 239 (407)
T ss_pred HHHHHhcCcc-cCCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCcc
Confidence 3455554432 01123489999999999999999999999999999 6999999987643322222 1122233331
Q ss_pred hhccccccChh-------hHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCcccc
Q 044388 457 LHKLVTQLSPS-------ILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLP 517 (717)
Q Consensus 457 L~~~~~~isP~-------~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~ 517 (717)
. .||++-- .+-.+ -.-.-++|.|||-|++--|=.|.++|.-..+|..-|||...=++
T Consensus 240 ~---itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 240 I---ITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred e---echhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 0 0111100 00111 12235789999999999999999999999999999999876443
No 12
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=94.01 E-value=0.057 Score=64.54 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=80.9
Q ss_pred eeEEEeCcchHHHHHHHHHHhhhhhhccc---hhhhhccccccChh----hHHhCCCCeEEEecCCCcEEEEcCCcceee
Q 044388 425 KMWYGVPGKDALKLEEAMRKHLHDLFEEQ---PDLLHKLVTQLSPS----ILKSEGLPVYRCVQNAGEFVLTFPRAYHSG 497 (717)
Q Consensus 425 K~WY~VP~~~~~kfE~l~~~~~p~~f~~~---~d~L~~~~~~isP~----~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~g 497 (717)
-.|=+...++++|++++++++-.+.-..- .+-+|-..+.+.-. ...+.||.-..++|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 47999999999999999999876532211 11123333334432 334579999999999999999999999999
Q ss_pred ecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHH
Q 044388 498 FNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHD 538 (717)
Q Consensus 498 fn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d 538 (717)
.|.--++..|+.|..|.-+.....-.+.||... ...++|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999988765444344444321 1255554
No 13
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=86.13 E-value=1.7 Score=47.52 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=66.1
Q ss_pred cccceEEeeccc-ccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhh
Q 044388 390 VLVPWLYIGMCF-SSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSI 468 (717)
Q Consensus 390 V~~P~LYiGm~f-S~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~ 468 (717)
-..-.+|++-.+ ..|.+|.++++..-|- .-+.|.|..-++.. ....+..+ .+-.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ---~~G~K~W~l~~~~~-----------------~~~~~~~~-----~~~~ 167 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVLQ---LEGRKRWRLYPPPD-----------------EPAPLYSD-----QPFK 167 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEEE---EES-EEEEEE-SCC-----------------CTTTSSCE-------TT
T ss_pred ccceEEEecCCCCCCccCEECCcccEEEE---CCceeEEEECCCCc-----------------ccccccCC-----CCcc
Confidence 355678999888 5899999998766533 44589999887111 00000000 0111
Q ss_pred HHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccc
Q 044388 469 LKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPH 518 (717)
Q Consensus 469 L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~ 518 (717)
..+..-|+..++=+|||.+..-+|.+|.+.+.|.++.-+++|-++.|..+
T Consensus 168 ~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl 217 (319)
T PF08007_consen 168 QLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADL 217 (319)
T ss_dssp TCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHH
T ss_pred ccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhH
Confidence 12333678899999999999999999999999999999999999988775
No 14
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=50.00 E-value=7.7 Score=29.73 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=25.2
Q ss_pred ccccccceeecccccc-cCCCceeehhchh-hhCCCC
Q 044388 617 CSVCLFDLHLSAVGCH-CSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 617 C~~Ck~~~flS~V~C~-c~~~~v~CL~Ha~-~lC~C~ 651 (717)
|.+|+...+|..+.|. |. .++|+.|-. +.-+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCc
Confidence 7889999999888998 74 689999863 223454
No 15
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.42 E-value=40 Score=34.15 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=32.0
Q ss_pred CCCeEEEecCCCcEEEEcCCcceeeecccccceeeecc-------cCCccccc
Q 044388 473 GLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNV-------APVDWLPH 518 (717)
Q Consensus 473 GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNF-------A~~~Wl~~ 518 (717)
.=+++.+.-.+|++|.+-||.||| |.+.++-|| +++.|.+.
T Consensus 114 d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 114 DGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 347889989999999999999999 555566555 56678764
No 16
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=31 Score=38.99 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=36.3
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHhhcccccCCceeecCCCCCCCCC
Q 044388 143 LEDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPC 188 (717)
Q Consensus 143 l~e~PvF~PT~EEF~Dp~~YI~~I~~~a~~yGIcKIVPP~~W~pp~ 188 (717)
..+.-+||||.-+--++-.| ..|+.+-..+|-+||.|| .|+|..
T Consensus 197 FkEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 197 FKEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred HhhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 34788999998877776665 468889999999999999 999963
No 17
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=26.27 E-value=95 Score=28.26 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=36.4
Q ss_pred EEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEc
Q 044388 428 YGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTF 490 (717)
Q Consensus 428 Y~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtf 490 (717)
+-||+...+.|+++.+...-..+..++.|+.+. |.+..+.|+++++..
T Consensus 7 ~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~e---------------v~~~~e~pee~~llI 54 (90)
T TIGR03792 7 FKVPPEDREAFLEADEEIWTPWLAKQPGFLGKE---------------VWWDPEKPEEGVLLI 54 (90)
T ss_pred EeeChhhHHHHHHHHHHHHHHHHHhCCCccceE---------------EEecCCCCCEEEEEE
Confidence 458999999999999998666667777776543 445566688888764
No 18
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=26.15 E-value=31 Score=22.31 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=7.9
Q ss_pred CCCCCccccc
Q 044388 19 SVPPGFESFA 28 (717)
Q Consensus 19 s~ppgf~~~~ 28 (717)
-+||||.+|-
T Consensus 3 r~p~gftpfr 12 (19)
T PF06753_consen 3 RRPPGFTPFR 12 (19)
T ss_pred ccCCCCCccc
Confidence 4799998874
Done!