Query 044388
Match_columns 717
No_of_seqs 290 out of 670
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ox0_A JMJC domain-containing 100.0 5.9E-89 2E-93 735.7 17.5 321 143-553 33-354 (381)
2 3dxt_A JMJC domain-containing 100.0 4.6E-87 1.6E-91 712.8 16.1 321 143-553 15-336 (354)
3 3opt_A DNA damage-responsive t 100.0 2.9E-86 9.9E-91 709.9 10.2 340 144-541 12-368 (373)
4 3avr_A Lysine-specific demethy 100.0 8.8E-58 3E-62 510.3 21.5 287 361-676 225-523 (531)
5 4ask_A Lysine-specific demethy 100.0 2.3E-53 7.8E-58 468.0 23.2 278 367-676 206-498 (510)
6 2xxz_A Lysine-specific demethy 100.0 6.5E-45 2.2E-49 386.9 11.8 160 361-529 166-330 (332)
7 2ypd_A Probable JMJC domain-co 98.2 4.7E-06 1.6E-10 90.2 11.2 103 425-527 234-343 (392)
8 3k3o_A PHF8, PHD finger protei 97.9 6.6E-05 2.3E-09 81.5 13.3 144 393-552 149-295 (371)
9 3kv4_A PHD finger protein 8; e 97.9 8.1E-05 2.8E-09 82.7 14.2 145 394-554 234-381 (447)
10 3pua_A GRC5, PHD finger protei 97.9 0.0001 3.6E-09 80.5 13.8 142 394-551 177-321 (392)
11 3kv5_D JMJC domain-containing 97.8 0.00012 4.3E-09 82.1 14.2 142 394-551 269-413 (488)
12 3kv9_A JMJC domain-containing 97.8 0.00013 4.4E-09 79.9 13.2 141 394-550 178-321 (397)
13 2yu1_A JMJC domain-containing 97.7 0.00045 1.5E-08 76.9 15.3 141 393-549 198-341 (451)
14 3k2o_A Bifunctional arginine d 97.6 9.4E-05 3.2E-09 79.4 8.5 122 392-518 173-297 (336)
15 4gjz_A Lysine-specific demethy 97.4 0.00037 1.3E-08 68.9 8.3 106 392-511 125-235 (235)
16 3pur_A Lysine-specific demethy 97.2 0.0019 6.5E-08 72.7 12.8 139 393-547 298-443 (528)
17 3d8c_A Hypoxia-inducible facto 96.5 0.0075 2.6E-07 64.8 9.6 110 390-511 182-296 (349)
18 3al5_A HTYW5, JMJC domain-cont 96.1 0.011 3.7E-07 63.2 8.4 111 390-514 166-277 (338)
19 1vrb_A Putative asparaginyl hy 89.2 0.87 3E-05 48.6 8.4 115 393-523 143-264 (342)
20 4diq_A Lysine-specific demethy 77.7 7.6 0.00026 43.6 9.8 105 392-519 165-273 (489)
21 2xdv_A MYC-induced nuclear ant 49.5 55 0.0019 36.1 9.6 102 391-519 139-245 (442)
22 1wfh_A Zinc finger (AN1-like) 34.0 14 0.00048 30.4 1.3 37 613-651 14-51 (64)
23 1wfp_A Zinc finger (AN1-like) 29.2 18 0.00063 30.5 1.2 37 613-651 24-61 (74)
24 1wg2_A Zinc finger (AN1-like) 28.8 17 0.00057 30.0 0.9 36 614-651 15-51 (64)
25 1wff_A Riken cDNA 2810002D23 p 27.8 22 0.00074 30.8 1.5 36 614-651 25-62 (85)
26 2b8m_A Hypothetical protein MJ 27.0 47 0.0016 28.4 3.6 38 480-517 69-108 (117)
27 2gu9_A Tetracenomycin polyketi 24.5 80 0.0027 26.2 4.5 38 478-515 63-100 (113)
28 1vr3_A Acireductone dioxygenas 23.9 57 0.0019 32.1 3.9 46 476-521 126-173 (191)
29 2pfw_A Cupin 2, conserved barr 23.8 88 0.003 26.4 4.7 24 478-501 73-96 (116)
30 1wfl_A Zinc finger protein 216 23.4 27 0.00094 29.5 1.2 36 614-651 25-61 (74)
31 1x4w_A Hypothetical protein FL 21.0 28 0.00097 28.8 0.9 36 614-651 15-54 (67)
32 1v70_A Probable antibiotics sy 20.4 74 0.0025 25.8 3.4 32 478-509 68-99 (105)
No 1
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=100.00 E-value=5.9e-89 Score=735.66 Aligned_cols=321 Identities=33% Similarity=0.617 Sum_probs=280.8
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHhhcc-cccCCceeecCCCCCCCCCCCCCCCCCCCCccccccchhhcccccccccccc
Q 044388 143 LEDAPVFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVS 221 (717)
Q Consensus 143 l~e~PvF~PT~EEF~Dp~~YI~~I~~~-a~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr~Q~V~~L~~r~~~~~~~ 221 (717)
-.++||||||+|||+||++||++|+++ |++|||||||||++|+|++.+++ .++++|++++|++...+.
T Consensus 33 ~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~~---~~~~~i~~piqQ~~~g~~-------- 101 (381)
T 2ox0_A 33 SARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDD---IDDLVIPAPIQQLVTGQS-------- 101 (381)
T ss_dssp TCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCSTT---CTTCEESSCEEEEEEEET--------
T ss_pred CCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccch---hhhcccCCcceeeecCCC--------
Confidence 468999999999999999999999998 68999999999999999998764 467899999998764321
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhhcCCCCCCccCCCCCc
Q 044388 222 RIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANT 301 (717)
Q Consensus 222 ~~~~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~yf~~~~~~~~~~~~~~ 301 (717)
|++ .+|+++ ++.|||.+|+++|+.++ +. .+
T Consensus 102 ---------------------------------g~~--~~~~~~-~k~~tl~~f~~~a~~~~--~~-~p----------- 131 (381)
T 2ox0_A 102 ---------------------------------GLF--TQYNIQ-KKAMTVREFRKIANSDK--YC-TP----------- 131 (381)
T ss_dssp ---------------------------------TEE--EEEEEE-CCCEEHHHHHHHHHSTT--TS-CC-----------
T ss_pred ---------------------------------ccc--cccccc-ccccCHHHHHHHhcccc--cC-CC-----------
Confidence 222 234554 58899999999998653 11 11
Q ss_pred ccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccCCccCCCCCCCCCcCc
Q 044388 302 AVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLS 381 (717)
Q Consensus 302 ~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~~SlL~ 381 (717)
...+.++||++|||+|+. ++|+||+||++++|+++ .++|||+|||.+.++||+
T Consensus 132 ------~~~~~~~lE~~fWr~v~~----~~~~YgaD~~gS~f~~~-----------------~~~WNL~~Lp~ll~~ll~ 184 (381)
T 2ox0_A 132 ------RYSEFEELERKYWKNLTF----NPPIYGADVNGTLYEKH-----------------VDEWNIGRLRTILDLVEK 184 (381)
T ss_dssp ------CCSSHHHHHHHHHHHTTS----SCCEEEEEEECCCSCTT-----------------CCSSCTTCCCCGGGHHHH
T ss_pred ------ccCCHHHHHHHHHhhCCc----CCceeecCCCcccCCCC-----------------CCCCchhhhhhHHHHHHH
Confidence 124689999999999985 47999999987666654 479999999999999999
Q ss_pred CCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccc
Q 044388 382 YESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLV 461 (717)
Q Consensus 382 ~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~ 461 (717)
+.+.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|+++.+|++||+|++
T Consensus 185 ~~~~~I~GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~~~~~~L~h~~ 264 (381)
T 2ox0_A 185 ESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 264 (381)
T ss_dssp HHCCCCBTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGSC
T ss_pred hcCCCCCCcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhhcchHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHHHHH
Q 044388 462 TQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLL 541 (717)
Q Consensus 462 ~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~Ll 541 (717)
++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++|+++|+.|.++++.. ....|+|+.|+
T Consensus 265 ~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~~-~~v~i~~d~~~ 343 (381)
T 2ox0_A 265 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRK-DMVKISMDVFV 343 (381)
T ss_dssp EEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSST-TCCCCCCHHHH
T ss_pred cccCHHHHHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhccccC-CceeecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887654 45677899987
Q ss_pred HHHHHHHHHHHH
Q 044388 542 LGAAREAVRAHW 553 (717)
Q Consensus 542 ~~~A~~~~~~~~ 553 (717)
-++ +...+..|
T Consensus 344 ~~~-~~~~~~~w 354 (381)
T 2ox0_A 344 RKF-QPERYKLW 354 (381)
T ss_dssp HHH-CGGGHHHH
T ss_pred HHh-ChHHHHHH
Confidence 554 33333444
No 2
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=100.00 E-value=4.6e-87 Score=712.76 Aligned_cols=321 Identities=33% Similarity=0.605 Sum_probs=279.3
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHhhcc-cccCCceeecCCCCCCCCCCCCCCCCCCCCccccccchhhcccccccccccc
Q 044388 143 LEDAPVFYPTEEEFQDTLKYIASIRPK-AEPYGICRIVPPSSWKPPCPLKEKPIWDSSTFVTRVQRVDKLQNRNSMRKVS 221 (717)
Q Consensus 143 l~e~PvF~PT~EEF~Dp~~YI~~I~~~-a~~yGIcKIVPP~~W~pp~~l~~~~~~~~~~F~tr~Q~V~~L~~r~~~~~~~ 221 (717)
..++||||||+|||+||.+||++|+++ |+++||||||||++|+|+..+++ .+++++.+++|++...+
T Consensus 15 ~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~~~~---~~~~~i~~pi~q~~~g~--------- 82 (354)
T 3dxt_A 15 NCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDN---ISEILIATPLQQVASGR--------- 82 (354)
T ss_dssp TCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSCSTT---CTTCEESSCEEEEEEEE---------
T ss_pred CCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCcccccc---hhcccccCCceeeecCC---------
Confidence 467999999999999999999999998 57999999999999999987653 35788888888865321
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhhcCCCCCCccCCCCCc
Q 044388 222 RIHNHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQYFSRDKNDAKGLGANT 301 (717)
Q Consensus 222 ~~~~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~yf~~~~~~~~~~~~~~ 301 (717)
.|++. +|+ .+.+.||+.+|+++|+.. .|..+.
T Consensus 83 --------------------------------~G~~~--~~~-~~~k~~t~~~f~~~a~~~---~~~~p~---------- 114 (354)
T 3dxt_A 83 --------------------------------AGVFT--QYH-KKKKAMTVGEYRHLANSK---KYQTPP---------- 114 (354)
T ss_dssp --------------------------------TTEEE--EEE-EECCCEEHHHHHHHHTST---TTSCCC----------
T ss_pred --------------------------------CceEE--Eee-eccCccCHHHHHHHHhhh---hccCCC----------
Confidence 14442 343 345899999999999853 233321
Q ss_pred ccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccCCccCCCCCCCCCcCc
Q 044388 302 AVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSGWNLNNFPRLPGSVLS 381 (717)
Q Consensus 302 ~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~~SlL~ 381 (717)
..+.++||++|||++... .|+||||++ ||+||.. .++|||+|||.+.++||+
T Consensus 115 -------~~~~~~lE~~fW~~~~~~----~p~YgaD~~----gS~F~~~-------------~~~WNL~~L~~~~~~Ll~ 166 (354)
T 3dxt_A 115 -------HQNFEDLERKYWKNRIYN----SPIYGADIS----GSLFDEN-------------TKQWNLGHLGTIQDLLEK 166 (354)
T ss_dssp -------CSSHHHHHHHHHHHGGGC----CCEEEEEEE----CCCSCTT-------------CCSSCTTSSCCHHHHHHH
T ss_pred -------CCCHHHHHHHHhhhcccC----CceeeecCC----CcccCCC-------------cchhhhhhccchhHHHHh
Confidence 135789999999998754 589999987 7777642 479999999999999999
Q ss_pred CCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccc
Q 044388 382 YESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLV 461 (717)
Q Consensus 382 ~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~ 461 (717)
+.+.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|+.++.|++||+|++
T Consensus 167 ~~~~~I~GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~~c~~fL~h~~ 246 (354)
T 3dxt_A 167 ECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKV 246 (354)
T ss_dssp HHCCCCCCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGCC
T ss_pred hcCCCCCCccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCchhhhhcHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCCCHHHHH
Q 044388 462 TQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLL 541 (717)
Q Consensus 462 ~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~Ll 541 (717)
++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++||++|+.|.++.+... ...|+||.++
T Consensus 247 ~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~C~~~-~v~i~~d~~~ 325 (354)
T 3dxt_A 247 ALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEA-RVTFSMDAFV 325 (354)
T ss_dssp EEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCCSSSC-CCCHHHHHHH
T ss_pred ccCCHHHHHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhhhcccccccCc-cceecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887654 4678999888
Q ss_pred HHHHHHHHHHHH
Q 044388 542 LGAAREAVRAHW 553 (717)
Q Consensus 542 ~~~A~~~~~~~~ 553 (717)
-.+ +.....+|
T Consensus 326 ~~~-~~~~~~~w 336 (354)
T 3dxt_A 326 RIL-QPERYDLW 336 (354)
T ss_dssp HHH-CHHHHHHH
T ss_pred Hhh-CHHHHHHH
Confidence 543 44444445
No 3
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=100.00 E-value=2.9e-86 Score=709.86 Aligned_cols=340 Identities=30% Similarity=0.554 Sum_probs=233.9
Q ss_pred CCCCccCCCHHhhhCHHHHHHHhhcccccCCceeecCCCCCCCCCCCCC-CCCCCCCccccccch-------hhcccccc
Q 044388 144 EDAPVFYPTEEEFQDTLKYIASIRPKAEPYGICRIVPPSSWKPPCPLKE-KPIWDSSTFVTRVQR-------VDKLQNRN 215 (717)
Q Consensus 144 ~e~PvF~PT~EEF~Dp~~YI~~I~~~a~~yGIcKIVPP~~W~pp~~l~~-~~~~~~~~F~tr~Q~-------V~~L~~r~ 215 (717)
++|||||||+|||+||.+||++|+++|+++||||||||++|++++.... .+.++++++++++|+ |..++|.+
T Consensus 12 ~~~pVF~PT~eeF~dF~~yi~~i~~~g~~~Gi~KVIPPkeW~~~~~~~~~~~~l~~~~i~~PI~Q~~~G~~G~~~~~nie 91 (373)
T 3opt_A 12 GGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPIQQHISGNKGLFMVQNVE 91 (373)
T ss_dssp SSSEEECCCHHHHTCHHHHHHTTHHHHTTSSEEEECCCHHHHTTSCSSCCHHHHHHCEEESCEEEEEEESSSEEEEEEEE
T ss_pred CCCCeeCCCHHHHhCHHHHHHHHHHhccccCeEEEeCchhhhhcccCCCcHhHHhcCcCCCCcEEEecCCCceEEEeeec
Confidence 7899999999999999999999999999999999999999999964221 123457899999988 44445555
Q ss_pred ccccccccc---------cccccccccccccccccCCCCCCCCCCCCCCCcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 044388 216 SMRKVSRIH---------NHSRRKRRRSTRMAVDCGSDSGNVSASGDVGCYEDERFGFEPGPAFTLNTFQKYADLFKAQY 286 (717)
Q Consensus 216 ~~~~~~~~~---------~~~k~k~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~fgf~~g~~~tl~~F~~~A~~fk~~y 286 (717)
+.|++.-.| ...++++|+.++.|-. +.+ +++... ..+..+++.+|+++++.|...
T Consensus 92 ~~r~~~~~q~k~l~~~~~~p~~~~~~~~~~~~~~--------~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 155 (373)
T 3opt_A 92 KNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSV--------SKS--TKLKLK-----NFESSFNIDDFEQFRTEYTID- 155 (373)
T ss_dssp CSCEEEHHHHHHHTTSSCCCCC---------------------------------------CCCCHHHHHHHTTTSSCC-
T ss_pred cccccCHHHHHHhhhhcCCCcccccccccccccc--------ccc--cccccc-----ccccccchHHHHHHHHhhccc-
Confidence 544332211 0111222222221110 000 011100 012478999999865433211
Q ss_pred cCCCCCCccCCCCCcccccccCCcChhhHHHHHHHhhccCCcceeeeecCCCCCcccCCCCCCCCcCCCCCchhhhhccC
Q 044388 287 FSRDKNDAKGLGANTAVLEEHWEPLVENIEGEYWRIVEKATEEIEVLYGADLETCVFGSGFPKTLNQVGSASDERYIKSG 366 (717)
Q Consensus 287 f~~~~~~~~~~~~~~~~~~~~~~ps~~~vE~efWr~V~~~~~~v~V~YGaDl~~~~~GSgFp~~~~~~~~~~~~~y~~~~ 366 (717)
.. . ...+++.++||++||++|+.. +|+||||+ +||+||.. .++
T Consensus 156 ----~~----------~--~~~~~~~~~lE~~yW~~~~~~----~p~YgaD~----~GS~F~~~-------------~~~ 198 (373)
T 3opt_A 156 ----LS----------D--FQNTERLKFLEEYYWKTLNFT----TPMYGADT----PGSIFPEG-------------LNV 198 (373)
T ss_dssp ----CT----------T--SSCHHHHHHHHHHHHHTTTTS----CCEEEEEE----ECCCSCTT-------------CCS
T ss_pred ----hh----------h--ccCcchHHHHHHHHHHhccCC----CceEecCC----CCCCcCCC-------------CCc
Confidence 00 0 011246789999999999864 68999996 58999852 589
Q ss_pred CccCCCCCCCCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhh
Q 044388 367 WNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHL 446 (717)
Q Consensus 367 WNLnnLp~~~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~ 446 (717)
|||+||| +||+|++.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+
T Consensus 199 WNL~~Lp----~lL~~l~~~I~GVntP~LYvGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~ 274 (373)
T 3opt_A 199 WNVAKLP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQF 274 (373)
T ss_dssp SCTTSCC------------------CCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEECCGGGHHHHHHHHHHSS
T ss_pred cChhhhh----hHHHHhcccCCCcchhheeeccccCCcceeecCCcceeEEEeecCCCeEEEEeCHHHHHHHHHHHHHhC
Confidence 9999999 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHH
Q 044388 447 HDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELY 526 (717)
Q Consensus 447 p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y 526 (717)
|+++.+|++||+|++++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++||++|+.|..+.
T Consensus 275 p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~a~~C~ 354 (373)
T 3opt_A 275 PEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAGKCH 354 (373)
T ss_dssp HHHHSSCSSCTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC-------------
T ss_pred hhhhhhCHHHhhCCcccCCHHHHHhcCCceEEEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHHhhccCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhcCCCCCCCHHHHH
Q 044388 527 REQGRKTSISHDKLL 541 (717)
Q Consensus 527 ~~~~~~~~~s~d~Ll 541 (717)
+. .....|++++|.
T Consensus 355 C~-~d~v~i~~~~~~ 368 (373)
T 3opt_A 355 CI-SDSVEIDVKKLA 368 (373)
T ss_dssp ---------------
T ss_pred cc-CCcceecHHHHH
Confidence 75 345566777654
No 4
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=100.00 E-value=8.8e-58 Score=510.32 Aligned_cols=287 Identities=19% Similarity=0.173 Sum_probs=232.9
Q ss_pred hhhccCCccCCCCC-----CCCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchH
Q 044388 361 RYIKSGWNLNNFPR-----LPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDA 435 (717)
Q Consensus 361 ~y~~~~WNLnnLp~-----~~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~ 435 (717)
.+...-|||++||. ..||||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||++++
T Consensus 225 ~w~~ql~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~E~~~l~SiNynhggg~~~Wy~VP~e~~ 304 (531)
T 3avr_A 225 KWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYW 304 (531)
T ss_dssp TTHHHHHHGGGSCGGGCSSCTTCGGGGSCSCCBTTSSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGH
T ss_pred hhHHHHHHHHhCCHHHcccCccchhhhcCCCCCCcChhheEeecCcccccceecCCcceeeEeecCCCCeEEEEeCHHHH
Confidence 45567889999997 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCcc
Q 044388 436 LKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 515 (717)
Q Consensus 436 ~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~W 515 (717)
++||+++++.. .++++ ..+|++|+.|+++|||||+++|+|||||||||||||||||+|||++||||||+++|
T Consensus 305 ~k~e~l~~k~~-------~~~~~-~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~ 376 (531)
T 3avr_A 305 GVLNDFCEKNN-------LNFLM-GSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTA 376 (531)
T ss_dssp HHHHHHHHHTT-------CCTTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSH
T ss_pred HHHHHHHHHcC-------CChhh-ceeecCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCch
Confidence 99999998753 34444 45689999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHH---hcCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 044388 516 LPHGQIAIELYR---EQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKRVDMERAR 592 (717)
Q Consensus 516 l~~g~~a~~~y~---~~~~~~~~s~d~Ll~~~A~~~~~~~~e~~~l~~~~~~~~~~~~~c~~~~~l~~~lk~~i~~E~~~ 592 (717)
++++. |+++|+ ..+..++|||++|+|++|+... ..+++.+ ..+...|...+..++.+
T Consensus 377 ~q~~~-A~e~y~~Nk~~~~~sivp~~~L~wn~a~~~~----------~~d~~l~---------~~ik~~L~rsl~~~~~~ 436 (531)
T 3avr_A 377 CQYKL-AVERYEWNKLQSVKSIVPMVHLSWNMARNIK----------VSDPKLF---------EMIKYCLLRTLKQCQTL 436 (531)
T ss_dssp HHHHH-HHHHHHHHHHHTCCCSSCHHHHHHHHHHHCC----------CCCHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhhhccCCCCCCHHHHHHHHHhhhh----------cccHHHH---------HHHHHHHHHHHHHHHHH
Confidence 99975 777775 4456899999999999998621 1111111 11222233344445566
Q ss_pred HHHhhccccccccccccCCcCcccccccccceeeccccccc----CCCceeehhchhhhCCCCCCceEEEEEcCHHHHHH
Q 044388 593 REFLSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHC----SSDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNI 668 (717)
Q Consensus 593 re~l~~~~~~~k~~~~~d~~~~~~C~~Ck~~~flS~V~C~c----~~~~v~CL~Ha~~lC~C~~~~~~ll~Ry~~~EL~~ 668 (717)
|+.|...+......+....++.++|..|+++||++.+.|.. ....++|++|+...|.| .++.+++|||+++||..
T Consensus 437 ~~~l~~~g~~i~~~~~~~~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~~~-l~~~~v~~ry~~eeL~~ 515 (531)
T 3avr_A 437 REALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGN-LENFVVLEQYKMEDLMQ 515 (531)
T ss_dssp HHHHHHTTCCEEECCCCTTCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHCTT-CTTCEEEECSCHHHHHH
T ss_pred HHHHHhCCCEEEeccccCCCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhcCcc-ccceEEEEEcCHHHHHH
Confidence 67665544444444433345789999999999999988743 12357999999875544 57889999999999999
Q ss_pred HHHHHHHh
Q 044388 669 LVEALEGK 676 (717)
Q Consensus 669 l~~~l~~r 676 (717)
++++|..-
T Consensus 516 ~yd~f~~~ 523 (531)
T 3avr_A 516 VYDQFTLA 523 (531)
T ss_dssp HHHTCCCC
T ss_pred HHHheEec
Confidence 99988643
No 5
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=100.00 E-value=2.3e-53 Score=467.97 Aligned_cols=278 Identities=20% Similarity=0.167 Sum_probs=227.5
Q ss_pred CccCCCCCC-----CCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHH
Q 044388 367 WNLNNFPRL-----PGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEA 441 (717)
Q Consensus 367 WNLnnLp~~-----~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l 441 (717)
.+|++||.. .|+||+|++..|+|||+||||+||+||+|+||+||++|+||||||+|++|+||+||++++++||++
T Consensus 206 ~eL~kLP~flr~~~~gslLs~l~~~I~GVNtpqLYigm~gS~t~wH~Ed~~l~SINynhggg~c~WY~VP~e~~~k~e~l 285 (510)
T 4ask_A 206 QELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAF 285 (510)
T ss_dssp HHGGGSCGGGSSSCTTBGGGGSSSCCTTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHH
T ss_pred HHHhhCcHHhCcCCCCchhhhCCCcCCCcChhheEEccccccccceecCCcceeEEEeecCCceeEEEECHHHHHHHHHH
Confidence 456777764 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCcc--ccch
Q 044388 442 MRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW--LPHG 519 (717)
Q Consensus 442 ~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~W--l~~g 519 (717)
+++. .+++|+. .+|++|+.|+++||||||++|+|||||||||||||||+|+|||+++|||||+++| ++.+
T Consensus 286 ~~k~-------~~d~l~~-~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~qlqlA 357 (510)
T 4ask_A 286 CDRH-------GVDYLTG-SWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLA 357 (510)
T ss_dssp HHHT-------TCCTTTS-CBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHHHHH
T ss_pred HHHh-------Ccchhhc-cccCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCHHHHHHH
Confidence 9875 3566654 4588999999999999999999999999999999999999999999999999987 5567
Q ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccccccchhHHHHHHHHH----HHHHHHHHHH
Q 044388 520 QIAIELYREQGRKTSISHDKLLLGAAREAVRAHWELNLLKKNTSDNLRWKDFCGKDGILAKALKKR----VDMERARREF 595 (717)
Q Consensus 520 ~~a~~~y~~~~~~~~~s~d~Ll~~~A~~~~~~~~e~~~l~~~~~~~~~~~~~c~~~~~l~~~lk~~----i~~E~~~re~ 595 (717)
.++.++|+..++.++|||++|+|+||++... . |.-+.+.||.+ +......++.
T Consensus 358 ~e~y~~n~~~~~~SivPm~~L~Wn~Ar~~k~----------~-------------d~~l~~liK~~L~rSL~~~~~~~d~ 414 (510)
T 4ask_A 358 LERYEWNEVKNVKSIVPMIHVSWNVARTVKI----------S-------------DPDLFKMIKFCLLQSMKHCQVQRES 414 (510)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHCCC----------C-------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccChHHHHHHHHhhhhc----------c-------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888899999999999999999986311 1 12233333332 2233444556
Q ss_pred hhccccccccccccCCcCcccccccccceeecccccccC----CCceeehhchhhhCCCCCCceEEEEEcCHHHHHHHHH
Q 044388 596 LSSSSQTMKMESNFDATSERECSVCLFDLHLSAVGCHCS----SDRYACLIHAKNFCSCAWGSKFFLYRYDTSELNILVE 671 (717)
Q Consensus 596 l~~~~~~~k~~~~~d~~~~~~C~~Ck~~~flS~V~C~c~----~~~v~CL~Ha~~lC~C~~~~~~ll~Ry~~~EL~~l~~ 671 (717)
+.+.+...+..+....+..++|..|...+|+-...-..+ ...++|+.||++.. -...++++++||+++||.++++
T Consensus 415 ~~~~g~~i~~~~~~~~~~~~~C~~C~~evFn~l~v~~~~~~~~~~~v~C~~Ca~~~~-~~~~~~~vl~~y~~~~L~~iyD 493 (510)
T 4ask_A 415 LVRAGKKIAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRS-AGLQGVVVLEQYRTEELAQAYD 493 (510)
T ss_dssp HHHHTCCEEECCCCTTCCCEECTTTCCEECSEEEEEECC----CEEEECHHHHHHST-TTTTTCEEEESSCHHHHHHHHH
T ss_pred HHhCCCEEeecCcCCCCcccccCCCCeEEEEEEEEEecCCCCCccceEChHhhhhcC-CCcceEEEEEEccHHHHHHHHh
Confidence 655555556666555556789999999999877443222 23489999998753 3678899999999999999999
Q ss_pred HHHHh
Q 044388 672 ALEGK 676 (717)
Q Consensus 672 ~l~~r 676 (717)
.|...
T Consensus 494 ~f~l~ 498 (510)
T 4ask_A 494 AFTLA 498 (510)
T ss_dssp HCCCC
T ss_pred CeEec
Confidence 98654
No 6
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-45 Score=386.86 Aligned_cols=160 Identities=24% Similarity=0.228 Sum_probs=139.9
Q ss_pred hhhccCCccCCCCCC-----CCCcCcCCCCCCCCcccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchH
Q 044388 361 RYIKSGWNLNNFPRL-----PGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDA 435 (717)
Q Consensus 361 ~y~~~~WNLnnLp~~-----~~SlL~~~~~~I~GV~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~ 435 (717)
.+...-.+|+.||.. .++||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||++++
T Consensus 166 ~w~~q~~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~Ed~~l~SiNynhgp~~~~Wy~VP~e~~ 245 (332)
T 2xxz_A 166 RWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYW 245 (332)
T ss_dssp HHHHHHHHHTTSCGGGCTTTTCCCSEETTEECCCTTSEEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGH
T ss_pred hhHHHHHHHhhCcHhhcccCccchhhhcCCcCCCcChhheEeecCcccccceecCCcceeEEeecCCCceEEEEECHHHH
Confidence 344445568999865 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCcc
Q 044388 436 LKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 515 (717)
Q Consensus 436 ~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~W 515 (717)
++||+++++..+ ++++. .+|++|+.|+++||||||++|+|||||||||||||||||+|||++||||||+++|
T Consensus 246 ~~~e~l~~k~~~-------d~~~~-~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~ 317 (332)
T 2xxz_A 246 ETISAFCDRHGV-------DYLTG-SWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTA 317 (332)
T ss_dssp HHHHHHHHHTTC-------CTTTS-CBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTT
T ss_pred HHHHHHHHhcCC-------chhhc-eecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcH
Confidence 999999998543 44443 4589999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhc
Q 044388 516 LPHGQIAIELYREQ 529 (717)
Q Consensus 516 l~~g~~a~~~y~~~ 529 (717)
+++ +.|+++|+.+
T Consensus 318 ~q~-~~a~erye~n 330 (332)
T 2xxz_A 318 YQY-QLALERYEWN 330 (332)
T ss_dssp GGG-GGC-------
T ss_pred HHH-HHHHHHHHhh
Confidence 988 4899998764
No 7
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=98.21 E-value=4.7e-06 Score=90.16 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=81.4
Q ss_pred eeEEEeCcchHHHHHHHHHHhhhhhh---ccchhhhhccccccChh----hHHhCCCCeEEEecCCCcEEEEcCCcceee
Q 044388 425 KMWYGVPGKDALKLEEAMRKHLHDLF---EEQPDLLHKLVTQLSPS----ILKSEGLPVYRCVQNAGEFVLTFPRAYHSG 497 (717)
Q Consensus 425 K~WY~VP~~~~~kfE~l~~~~~p~~f---~~~~d~L~~~~~~isP~----~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~g 497 (717)
-+|-...+.+++|+.+++++...+.. ....+-+|.....++.. ...+.||..+.++|++||.|++-+|++|.+
T Consensus 234 AlW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV 313 (392)
T 2ypd_A 234 ALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQV 313 (392)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEE
T ss_pred ceeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHH
Confidence 68999999999999999999876531 11234567677788874 234589999999999999999999999999
Q ss_pred ecccccceeeecccCCccccchhHHHHHHH
Q 044388 498 FNCGFNCAEAVNVAPVDWLPHGQIAIELYR 527 (717)
Q Consensus 498 fn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~ 527 (717)
.|.+-++..|+||..+.=+.....-.+.+|
T Consensus 314 ~Nl~~~i~va~df~spe~~~~c~~lt~E~R 343 (392)
T 2ypd_A 314 QNFHSCIQVTEDFVSPEHLVESFHLTQELR 343 (392)
T ss_dssp EESSEEEEEEEEECCGGGHHHHHHHHHHC-
T ss_pred hcccchhhHhhhhcChhhHHHHHHHHHHHh
Confidence 999999999999999987764433333333
No 8
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=97.93 E-value=6.6e-05 Score=81.50 Aligned_cols=144 Identities=11% Similarity=0.040 Sum_probs=102.0
Q ss_pred ceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhC
Q 044388 393 PWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSE 472 (717)
Q Consensus 393 P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~ 472 (717)
-|+++|..+|.+.+|++-....+-|.+..| -|.||-+||.... +. +.+..... ..+.+ .++ + ..
T Consensus 149 r~l~mGp~gS~T~~HiD~~gts~w~~vv~G-rK~w~L~PPt~~n-l~-~y~~~~~s--~~~~e------~~~-~----~~ 212 (371)
T 3k3o_A 149 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKG-EKIFYLIRPTNAN-LT-LFECWSSS--SNQNE------MFF-G----DQ 212 (371)
T ss_dssp CEEEEECTTEEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHH-HH-HHHHHHTS--TTGGG------SCG-G----GT
T ss_pred eEEEEcCCCCCCCeEECCCCCceeEEEeee-EEEEEEECCCccc-cc-cccccccC--Cccch------hhc-c----cc
Confidence 389999999999999999988888999999 6999999998753 21 11111100 00111 111 1 12
Q ss_pred CCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCC--CCC-HHHHHHHHHHHHH
Q 044388 473 GLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKT--SIS-HDKLLLGAAREAV 549 (717)
Q Consensus 473 GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~--~~s-~d~Ll~~~A~~~~ 549 (717)
....++++|+|||.+++=.|-+|+++|..-+++..-||....=++.-..+.+.=+..+.+. .|| ++.|+|-+|....
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~w~~~~~~~ 292 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHIL 292 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----CCCTTHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999987776655544333333333 343 6888898888755
Q ss_pred HHH
Q 044388 550 RAH 552 (717)
Q Consensus 550 ~~~ 552 (717)
...
T Consensus 293 ~~~ 295 (371)
T 3k3o_A 293 DIF 295 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 9
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.92 E-value=8.1e-05 Score=82.73 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=104.2
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
|+++|..+|.+.+|++-....+.|.+..| -|.||-+||.... +. +.++... ...+ ...++ + ...
T Consensus 234 ~~~mG~~gS~T~~HiD~~~ts~w~~vi~G-rK~w~L~PPt~~n-l~-~~~~~~~----s~~~----~~~~~-~----~~~ 297 (447)
T 3kv4_A 234 YCLMSVRDSYTDFHIDFGGTSVWYHVLKG-EKIFYLIRPTNAN-LT-LFECWSS----SSNQ----NEMFF-G----DQV 297 (447)
T ss_dssp EEEEECTTEEEEEECCGGGCEEEEEEEES-EEEEEEECCCHHH-HH-HHHHHHT----CSSG----GGSCG-G----GGS
T ss_pred EEEEeCCCCCCCeeECCCCCceeEEEeee-EEEEEEeCCCccc-cc-chhhccc----Ccch----hhhhc-c----ccc
Confidence 89999999999999999999888999999 7999999999643 11 1111110 0000 01111 1 123
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCC--CCC-HHHHHHHHHHHHHH
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKT--SIS-HDKLLLGAAREAVR 550 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~--~~s-~d~Ll~~~A~~~~~ 550 (717)
...++++|+|||.+++=.|-+|+++|..-+++..-||.+..-|+.-....+.=+..+.+. .|| ++.++|-+|.....
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~~~~~~~p~f~~~~w~~~~~~~~ 377 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHILD 377 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTCCGGGSCTTHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcCCCccccccCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999988877666554333333333 343 67888988887655
Q ss_pred HHHH
Q 044388 551 AHWE 554 (717)
Q Consensus 551 ~~~e 554 (717)
...+
T Consensus 378 ~~~~ 381 (447)
T 3kv4_A 378 IFRG 381 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 10
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=97.88 E-value=0.0001 Score=80.46 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=102.4
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
|+++|+.+|.+.+|++-....+.|.+..| -|.||-+||.... +. +.+.... ...+ ...++ +. ..
T Consensus 177 ~~~mGp~gS~T~fHiD~~gTs~w~~vi~G-rK~w~L~PPt~~n-l~-~y~~~~~----s~~~----~e~~~-~~----~~ 240 (392)
T 3pua_A 177 YCLICVKDSYTDFHIDSGGASAWYHVLKG-EKTFYLIRPASAN-IS-LYERWRS----ASNH----SEMFF-AD----QV 240 (392)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHH-HH-HHHHHHH----STTG----GGSCG-GG----GS
T ss_pred EEEEeCCCCCCCEeECCCCCceeeeeccc-eEEEEEECCCccc-cc-chhhccc----Ccch----hhhhh-cc----cc
Confidence 89999999999999999888889999998 7999999998753 21 1111110 0000 00111 11 12
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCC--CCCC-HHHHHHHHHHHHHH
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRK--TSIS-HDKLLLGAAREAVR 550 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~--~~~s-~d~Ll~~~A~~~~~ 550 (717)
...++++|+|||.+++=.|-+|+++|..-+++..-||.+..=++....+.+.=+..+.+ -.|| ++.|+|-+|.....
T Consensus 241 ~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~wy~~~~~l~ 320 (392)
T 3pua_A 241 DKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHLLE 320 (392)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHTCCCSSCCTTHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhCCCccCcCCChHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998887766665543233333 3443 68888988876544
Q ss_pred H
Q 044388 551 A 551 (717)
Q Consensus 551 ~ 551 (717)
.
T Consensus 321 ~ 321 (392)
T 3pua_A 321 A 321 (392)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.84 E-value=0.00012 Score=82.13 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=101.9
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
|+++|..+|.+.+|++-....+.|.+..| -|.|+-+||..... . +.+.. ....++ ... .+....
T Consensus 269 ~~~mG~~gS~T~~H~D~~~t~~w~~vv~G-~K~w~L~PPt~~~~-~-~y~~~----~~~~~~----~~~-----~~~~~~ 332 (488)
T 3kv5_D 269 YCLMGVQDSYTDFHIDFGGTSVWYHVLWG-EKIFYLIKPTDENL-A-RYESW----SSSVTQ----SEV-----FFGDKV 332 (488)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHH-H-HHHHH----HTCSSG----GGS-----CGGGSS
T ss_pred EEEEcCCCCCCCeEECCCCCceeeeccCe-eEEEEEeCCccccc-c-ccccc----ccCCcc----chh-----hhcccc
Confidence 99999999999999999888888888888 79999999976531 1 11111 101110 000 111223
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHH
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSI---SHDKLLLGAAREAVR 550 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~---s~d~Ll~~~A~~~~~ 550 (717)
...++++|+|||.+++-.|-+|+++|..-+++..-||....=++.-..+.+.=+..+.+..| -+++|+|-+|.....
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~~~~~~~p~f~~~~w~~~~~~l~ 412 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLE 412 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTCCTTSSCTTHHHHHHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCCcccccCccHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999998777666555443333333333 367888888876544
Q ss_pred H
Q 044388 551 A 551 (717)
Q Consensus 551 ~ 551 (717)
.
T Consensus 413 ~ 413 (488)
T 3kv5_D 413 T 413 (488)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=97.81 E-value=0.00013 Score=79.86 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=101.5
Q ss_pred eEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhCC
Q 044388 394 WLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSEG 473 (717)
Q Consensus 394 ~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~G 473 (717)
|+++|..+|.+.+|++-....+-|.+..| -|.||-+||..... . +.+.. ....++ ...++ +. ..
T Consensus 178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~G-rK~w~L~PPt~~nl-~-ly~~~----~~s~~~----~e~~~-~~----~~ 241 (397)
T 3kv9_A 178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWG-EKIFYLIKPTDENL-A-RYESW----SSSVTQ----SEVFF-GD----KV 241 (397)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHH-H-HHHHH----HTSGGG----GGSCG-GG----GS
T ss_pred EEEEcCCCCCCCEEECCCCCceeeeecCc-eEEEEEeCCccccc-c-ccccc----ccCCCc----chhhh-cc----cc
Confidence 99999999999999999999888999999 79999999987541 1 11111 100000 00111 11 12
Q ss_pred CCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHH
Q 044388 474 LPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSI---SHDKLLLGAAREAVR 550 (717)
Q Consensus 474 Ipv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~---s~d~Ll~~~A~~~~~ 550 (717)
...++++|+|||.+++-.|-+|+++|..-+++..-||....=++.-..+.+.=...+....| -++.|+|-+|.....
T Consensus 242 ~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~~~~~~fp~F~~~~w~~a~~~l~ 321 (397)
T 3kv9_A 242 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLE 321 (397)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSTTHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCCCccCcCccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998777665554433333333333 367888888876543
No 13
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=97.69 E-value=0.00045 Score=76.89 Aligned_cols=141 Identities=11% Similarity=-0.068 Sum_probs=97.9
Q ss_pred ceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhC
Q 044388 393 PWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSE 472 (717)
Q Consensus 393 P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~ 472 (717)
-|+++|..+|.+.+|++-....+.|.+..| -|.|+-+||...... +... ... ...+.+ .+-|+.
T Consensus 198 r~~~mGp~gS~T~~H~D~~~ts~w~avi~G-rK~w~L~PP~~~~~~--~y~~-~~~-s~~q~~-------~~~p~~---- 261 (451)
T 2yu1_A 198 KYCLMSVRGCYTDFHVDFGGTSVWYHIHQG-GKVFWLIPPTAHNLE--LYEN-WLL-SGSQGD-------IFLGDR---- 261 (451)
T ss_dssp CEEEEECTTCEEEEECCGGGCEEEEEEEES-CEEEEEECCCHHHHH--HHHH-HHH-TTCCSS-------SCHHHH----
T ss_pred eEEEEccCCCCCCeEECCCCcchhhheecc-eEEEEEeCCCccccc--cccc-ccc-cccchh-------hhhccc----
Confidence 389999999999999999888888888888 699999999985421 1111 000 001111 112332
Q ss_pred CCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHHHH--HHhcCCCCCCC-HHHHHHHHHHHHH
Q 044388 473 GLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIEL--YREQGRKTSIS-HDKLLLGAAREAV 549 (717)
Q Consensus 473 GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~~~--y~~~~~~~~~s-~d~Ll~~~A~~~~ 549 (717)
.-..++++++|||.+++=.|=+|++.|..-+++...||.+..=++.-....+. --.....-.|+ ++.|+|-+|..-.
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~~v~~~~~~p~f~~~~w~~~~~~~ 341 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYV 341 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHTTCCTTSSCTTHHHHHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHHHhhCCCccccCccHHHHHHHHHHHHH
Confidence 13578999999999999999999999999999999999998777654444332 11223344455 5678887776543
No 14
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=97.63 E-value=9.4e-05 Score=79.44 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=85.2
Q ss_pred cceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHh
Q 044388 392 VPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKS 471 (717)
Q Consensus 392 ~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~ 471 (717)
..|+++|..+|.+.+|.+.....+++.+..| .|.|+.+|+.....+-..-............+++.. .-|..-..
T Consensus 173 ~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G-~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~----~~P~~~~~ 247 (336)
T 3k2o_A 173 YRWFVMGPPRSGTGIHIDPLGTSAWNALVQG-HKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNV----IYPRTQLP 247 (336)
T ss_dssp CEEEEEECTTCEEEEECCGGGCEEEEEEEES-CEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHH----TGGGGGST
T ss_pred ceEEEECCCCccCCcccCCCccceeeEEEee-eEEEEEeCCCcchhcccCcccccCCCccchhhhhhh----hCcchhhh
Confidence 4589999999999999999888888888888 699999999975433211000000000001111110 11211100
Q ss_pred ---CCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccc
Q 044388 472 ---EGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPH 518 (717)
Q Consensus 472 ---~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~ 518 (717)
.+.+.+.++|+|||.+++-+|-+|++.|.+-+++.+.||.....++.
T Consensus 248 ~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~ 297 (336)
T 3k2o_A 248 TWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPV 297 (336)
T ss_dssp TSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHH
T ss_pred cccccCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHH
Confidence 24678999999999999999999999999999999999999876653
No 15
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=97.37 E-value=0.00037 Score=68.89 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred cceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhc--cccccChhh-
Q 044388 392 VPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHK--LVTQLSPSI- 468 (717)
Q Consensus 392 ~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~--~~~~isP~~- 468 (717)
.+++++|..+|.+.+|.+.. ..++.+..| .|.|..+|+++...+ +|... ..+.. .+-...|+.
T Consensus 125 ~~~~wiG~~gs~t~~H~D~~--~n~~~qv~G-~K~w~L~pP~~~~~l-------~~~~~----~~~~~~s~vd~~~~d~~ 190 (235)
T 4gjz_A 125 TINAWFGPQGTISPLHQDPQ--QNFLVQVMG-RKYIRLYSPQESGAL-------YPHDT----HLLHNTSQVDVENPDLE 190 (235)
T ss_dssp EEEEEEECTTCEEEEECCSS--EEEEEEEES-CEEEEEECGGGGGGS-------CBCSS----TTTTTBBSSCTTSCCTT
T ss_pred ceEEEEeCCCCCceeeeccc--cceEEEEee-eEeeEEcCccccccc-------ccCcc----cccCccccccccCcchh
Confidence 46899999999999998875 355666677 799999999886532 22110 00000 000111110
Q ss_pred --HHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeeccc
Q 044388 469 --LKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVA 511 (717)
Q Consensus 469 --L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA 511 (717)
=.-.+.+.+.++|+|||.+++=+|-+|.+.|.+.+++.+++|+
T Consensus 191 ~~p~~~~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~w~s 235 (235)
T 4gjz_A 191 KFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 235 (235)
T ss_dssp TCGGGGGCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEC
T ss_pred hCccccCCCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEEecC
Confidence 0113467899999999999999999999999998887766653
No 16
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.23 E-value=0.0019 Score=72.75 Aligned_cols=139 Identities=19% Similarity=0.078 Sum_probs=96.0
Q ss_pred ceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHHhC
Q 044388 393 PWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILKSE 472 (717)
Q Consensus 393 P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~~~ 472 (717)
-|+++|+.+|.+.+|++-......+++..| -|.||.+||.... +. +.+.... .++ ...++. ..+
T Consensus 298 rf~lmg~~gS~Td~HiD~~gts~w~~v~~G-rK~w~L~PPt~~n-l~-~y~~w~~-----s~~----~~~wfg-d~l--- 361 (528)
T 3pur_A 298 QFCLAGMAGSYTDFHVDFGGSSVYYHILKG-EKIFYIAAPTEQN-FA-AYQAHET-----SPD----TTTWFG-DIA--- 361 (528)
T ss_dssp SEEEEECTTEEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHH-HH-HHHHHHH-----SSC----CSCCGG-GGT---
T ss_pred EEEEEeCCCCCCCeeECCCCCceeEEEecc-eEEEEEeCCCccc-hh-hhhhhcc-----CCc----hhhhhc-ccc---
Confidence 489999999999999998888777777778 7999999998643 11 1111110 111 111222 112
Q ss_pred CCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCccccchhHHH--HHHH--hcCCCC--CCC-HHHHHHHHH
Q 044388 473 GLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAI--ELYR--EQGRKT--SIS-HDKLLLGAA 545 (717)
Q Consensus 473 GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~Wl~~g~~a~--~~y~--~~~~~~--~~s-~d~Ll~~~A 545 (717)
...+++++|+|||.+++-+|-+|+++|.--+++..-||.+..=|+...... |.+. ..+.+. .|+ ++.++|-.+
T Consensus 362 ~~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~iE~~~~k~~~~~~kf~fp~F~~v~W~y~ 441 (528)
T 3pur_A 362 NGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHLENAIRKEIRSEEKFYFPNFELLHWMYM 441 (528)
T ss_dssp TTCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHHCCCTTCCCCTTHHHHHHHHH
T ss_pred cccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHHHHHhhhhccCCCccccCcCHHHHHHHHH
Confidence 235689999999999999999999999999999999999987766554433 3221 122222 464 577788776
Q ss_pred HH
Q 044388 546 RE 547 (717)
Q Consensus 546 ~~ 547 (717)
..
T Consensus 442 ~~ 443 (528)
T 3pur_A 442 RN 443 (528)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 17
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=96.48 E-value=0.0075 Score=64.77 Aligned_cols=110 Identities=16% Similarity=-0.003 Sum_probs=73.4
Q ss_pred cccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhc-cccccChhh
Q 044388 390 VLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHK-LVTQLSPSI 468 (717)
Q Consensus 390 V~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~-~~~~isP~~ 468 (717)
+...+|++|..+|.+.+|.+.+ ..++.+..| .|.|.-+|+.+...+ +|..... + .-.+ .+.+-.|+.
T Consensus 182 ~~~~~l~iG~~gs~t~~H~D~~--~n~~~qv~G-~K~~~L~pP~~~~~l-------y~~~~~~-~-~~~~s~vd~~~~d~ 249 (349)
T 3d8c_A 182 LTSNLLLIGMEGNVTPAHYGEQ--QNFFAQIKG-YKRCILFPPDQFECL-------YPYPVHH-P-CDRQSQVDFDNPDY 249 (349)
T ss_dssp EEECEEEEECTTCEEEEECCSE--EEEEEEEES-CEEEEEECGGGHHHH-------CBBCTTS-T-TBTBBCSCTTSCCT
T ss_pred cccceEEEECCCCCccceECCh--hcEEEEEec-eEEEEEeCcchhhhh-------ccccccC-C-CCCcccccCCCcch
Confidence 3556899999999999998765 466667778 799999999986543 2210000 0 0000 000111210
Q ss_pred ---HHhCCCCeEEEecCCCcEEEEcCCcceeeeccc-ccceeeeccc
Q 044388 469 ---LKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCG-FNCAEAVNVA 511 (717)
Q Consensus 469 ---L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~G-fn~aEAVNFA 511 (717)
-.-.+.+.+.++++|||.+++=+|-+|.+.|.+ -.++.||||-
T Consensus 250 ~~~p~~~~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w 296 (349)
T 3d8c_A 250 ERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFW 296 (349)
T ss_dssp TTCGGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred hhCcccccCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence 011235789999999999999999999999997 4567777763
No 18
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=96.13 E-value=0.011 Score=63.20 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=75.4
Q ss_pred cccceEEeecccccccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhc-cchhhhhccccccChhh
Q 044388 390 VLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFE-EQPDLLHKLVTQLSPSI 468 (717)
Q Consensus 390 V~~P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~-~~~d~L~~~~~~isP~~ 468 (717)
+...++++|..++.+.+|.+.++ .++.+..| .|.|...|+.+...+ ++..-. ...++- ....-.-|.
T Consensus 166 ~~~s~l~~g~~g~~~~~H~D~~~--n~~~qv~G-~K~w~L~pP~~~~~l-------y~~~~~~~~~d~~-~~d~~~~p~- 233 (338)
T 3al5_A 166 FFSSVFRISSPGLQLWTHYDVMD--NLLIQVTG-KKRVVLFSPRDAQYL-------YLKGTKSEVLNID-NPDLAKYPL- 233 (338)
T ss_dssp EEEEEEEEECTTCEEEEECCSSE--EEEEECSS-CEEEEEECGGGGGGG-------TEETTEESCCCSS-SCCTTTCTT-
T ss_pred cccceeEECCCCCCccceECCcc--cEEEEEEE-EEEEEEECccccccc-------ccCCCCcccccCC-CcchhhCcc-
Confidence 34568999999999999987753 55556667 799999999876432 111000 000000 000001122
Q ss_pred HHhCCCCeEEEecCCCcEEEEcCCcceeeecccccceeeecccCCc
Q 044388 469 LKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 514 (717)
Q Consensus 469 L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~ 514 (717)
+. +.+.+.++++|||.+++=+|-+|.+.|.+.+++.+++|....
T Consensus 234 ~~--~~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~ 277 (338)
T 3al5_A 234 FS--KARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLP 277 (338)
T ss_dssp GG--GCCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSC
T ss_pred cc--cCCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCc
Confidence 11 357899999999999999999999999999998888886643
No 19
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=89.20 E-value=0.87 Score=48.64 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=71.5
Q ss_pred ceEEeecccccccceecCCCceeeeeeecCCceeEEEe-CcchHHHHHHHHHHhhhhhhcc----chhhhhccccccChh
Q 044388 393 PWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGV-PGKDALKLEEAMRKHLHDLFEE----QPDLLHKLVTQLSPS 467 (717)
Q Consensus 393 P~LYiGm~fS~f~WH~ED~~l~SINYlH~GapK~WY~V-P~~~~~kfE~l~~~~~p~~f~~----~~d~L~~~~~~isP~ 467 (717)
+.+|+|-.++.+..|.+.++ .+..+-.| .|.|... |+.....+ .+..... ..++......- -|.
T Consensus 143 ~~~~~gp~g~~~~~H~D~~d--nfl~Qv~G-~Krw~L~~~P~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~-~p~ 211 (342)
T 1vrb_A 143 AIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNPM-------QHYDLSEAPYYPDDLQSYWKGD-PPK 211 (342)
T ss_dssp EEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSCS-------SCEECC----CCHHHHHHCCSC-CCC
T ss_pred ceEEEeCCCCCCCCeECChh--cEEEEEEE-EEEEEEecCCcccccc-------Ccccccccccccccccccchhh-ccc
Confidence 44999988999999998765 33334456 7999999 77642111 1100000 00000000000 011
Q ss_pred hHHhCCCCeEEEecCCCcEEEEcCCcceeeeccc--ccceeeecccCCccccchhHHH
Q 044388 468 ILKSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCG--FNCAEAVNVAPVDWLPHGQIAI 523 (717)
Q Consensus 468 ~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~G--fn~aEAVNFA~~~Wl~~g~~a~ 523 (717)
+ ...+.+.++-+|||.++.=+|.+|.+.+.| -+++-+++ .+.|..+...+.
T Consensus 212 -~--~~~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~~~~dll~~~l 264 (342)
T 1vrb_A 212 -E--DLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QPAWLDLMLAAL 264 (342)
T ss_dssp -T--TCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CCBHHHHHHHHH
T ss_pred -c--ccCCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CCcHHHHHHHHH
Confidence 1 226789999999999999999999999994 67777777 678877655443
No 20
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=77.69 E-value=7.6 Score=43.57 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=74.3
Q ss_pred cceEEeeccccc-ccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhHH
Q 044388 392 VPWLYIGMCFSS-FCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSILK 470 (717)
Q Consensus 392 ~P~LYiGm~fS~-f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L~ 470 (717)
.--+|++-.+|. |.-|.++++. +..+-.| .|.|...++.+... .+|.. ...+ +.+.
T Consensus 165 ~~N~Y~tp~Gs~g~~pH~D~~Dv--FllQv~G-~KrWrL~~P~~~~~-------~lp~~--~~~~--------~~~~--- 221 (489)
T 4diq_A 165 GSNVYLTPPNSQGFAPHYDDIEA--FVLQLEG-RKLWRVYRPRAPTE-------ELALT--SSPN--------FSQD--- 221 (489)
T ss_dssp EEEEEEECSSBCCSCCBCCSSEE--EEEEEEE-CEEEEEECCSSGGG-------TTCSS--CCCC--------CCGG---
T ss_pred cceEEecCCCcccccCccCCcce--EEEEEee-EEEEEEeCCCCccc-------cCCCc--cccc--------CCcc---
Confidence 346899988884 7889999864 4455566 69999999886431 12211 1111 2222
Q ss_pred hCCCCeEEEecCCCcEEEEcCCcceeeecc--cccceeeecccC-Cccccch
Q 044388 471 SEGLPVYRCVQNAGEFVLTFPRAYHSGFNC--GFNCAEAVNVAP-VDWLPHG 519 (717)
Q Consensus 471 ~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~--Gfn~aEAVNFA~-~~Wl~~g 519 (717)
+.+-|++.++-+|||.+++-||..|.+.+. ++++.-++.+.. ..|.++-
T Consensus 222 ~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~~tw~dll 273 (489)
T 4diq_A 222 DLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFL 273 (489)
T ss_dssp GCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTTCBHHHHH
T ss_pred cccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCcccHHHHH
Confidence 246789999999999999999999999998 467777777654 5787643
No 21
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=49.51 E-value=55 Score=36.09 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=65.7
Q ss_pred ccceEEeeccccc-ccceecCCCceeeeeeecCCceeEEEeCcchHHHHHHHHHHhhhhhhccchhhhhccccccChhhH
Q 044388 391 LVPWLYIGMCFSS-FCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDALKLEEAMRKHLHDLFEEQPDLLHKLVTQLSPSIL 469 (717)
Q Consensus 391 ~~P~LYiGm~fS~-f~WH~ED~~l~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~p~~f~~~~d~L~~~~~~isP~~L 469 (717)
....+|+|-.++. |..|.++++. +-.+-.| .|.|...|+.. -+|.. .. .- .|.
T Consensus 139 ~~~n~y~~~~g~~g~~~H~D~~dv--f~~Qv~G-~Krw~l~~p~~----------pl~~~----~s-----~d--~~~-- 192 (442)
T 2xdv_A 139 VGSNVYITPAGSQGLPPHYDDVEV--FILQLEG-EKHWRLYHPTV----------PLARE----YS-----VE--AEE-- 192 (442)
T ss_dssp CEEEEEEECTTCBCSCSEECSSEE--EEEEEES-CEEEEEECCSS----------TTCSS----CE-----EC--CTT--
T ss_pred cccceEECCCCCCCccceECCcce--EEEEEEe-EEEEEEccCCC----------Ccccc----CC-----CC--chh--
Confidence 4567899998875 5899977653 3334456 79999999874 01110 00 00 111
Q ss_pred HhCCCCeEEEecCCCcEEEEcCCcceeeeccc-ccceeeeccc---CCccccch
Q 044388 470 KSEGLPVYRCVQNAGEFVLTFPRAYHSGFNCG-FNCAEAVNVA---PVDWLPHG 519 (717)
Q Consensus 470 ~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~G-fn~aEAVNFA---~~~Wl~~g 519 (717)
+.|-+.+.++=+|||.++.-||.+|.+.+.+ -..+..+.++ ...|.++-
T Consensus 193 -~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~~~~~SlhlT~~~~~~~~w~~~l 245 (442)
T 2xdv_A 193 -RIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFL 245 (442)
T ss_dssp -TSCSCSEEEEECTTCEEEECTTCEEEEECCSSSCCEEEEEEEECTTCSHHHHH
T ss_pred -hcCCcceEEEECCCcEEEECCCceEEEEecCCCcceeeccccccccchHHHHH
Confidence 2356889999999999999999999999875 2223322232 35576543
No 22
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.02 E-value=14 Score=30.40 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=28.3
Q ss_pred CcccccccccceeecccccccCCCceeehhchh-hhCCCC
Q 044388 613 SERECSVCLFDLHLSAVGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 613 ~~~~C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
....|..|+.-+-|..+.|.|. .++|..|-- +...|+
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg--~~FC~~HRy~e~H~C~ 51 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCG--TTFCGSHRYPEVHGCT 51 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSS--CEECTTTCSTTTTTCC
T ss_pred cCCcChhhCCccCccCEEeecC--CEeccccCCcccCCCC
Confidence 3568999999988888899874 689998853 234565
No 23
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.24 E-value=18 Score=30.51 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=28.5
Q ss_pred CcccccccccceeecccccccCCCceeehhchh-hhCCCC
Q 044388 613 SERECSVCLFDLHLSAVGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 613 ~~~~C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
....|..|+.-+-|..+.|.|. .++|..|-- +...|.
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg--~~FCs~HRy~e~H~C~ 61 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCG--STFCGTHRYPESHECQ 61 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTS--CEECTTTCSTTTSCCC
T ss_pred cCccchhhcCcccccceEeccC--CEeccccCCCcCCCCc
Confidence 4568999999988888999885 689998853 234554
No 24
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.76 E-value=17 Score=29.96 Aligned_cols=36 Identities=19% Similarity=0.488 Sum_probs=27.6
Q ss_pred cccccccccceeecccccccCCCceeehhchh-hhCCCC
Q 044388 614 ERECSVCLFDLHLSAVGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 614 ~~~C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
...|..|+.-+-|..+.|.|. .++|..|-- +...|+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg--~~FC~~HR~~e~H~C~ 51 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCG--STFCGSHRYPEKHECS 51 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTS--CEECSSSCSSTTTTCC
T ss_pred CCcChhhCCcccccCeEeecC--CEecccCCCccccCCC
Confidence 468999999888888899874 689998853 234564
No 25
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.78 E-value=22 Score=30.83 Aligned_cols=36 Identities=22% Similarity=0.556 Sum_probs=27.2
Q ss_pred cccccccccceeec-ccccccCCCceeehhchh-hhCCCC
Q 044388 614 ERECSVCLFDLHLS-AVGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 614 ~~~C~~Ck~~~flS-~V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
...|..|+.-+-|. .+.|.|. .++|..|-- +...|.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg--~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCG--NNFCASHRYAEAHGCN 62 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTC--CEECTTTCSTGGGTCC
T ss_pred CccchhhCCeecccCCeEcCCC--CEecccCCCccCCCCc
Confidence 46899999988885 7899874 689998852 234554
No 26
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.98 E-value=47 Score=28.45 Aligned_cols=38 Identities=13% Similarity=-0.120 Sum_probs=27.2
Q ss_pred ecCCCcEEEEcCCcceeeecccccceeeec--ccCCcccc
Q 044388 480 VQNAGEFVLTFPRAYHSGFNCGFNCAEAVN--VAPVDWLP 517 (717)
Q Consensus 480 vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVN--FA~~~Wl~ 517 (717)
.-.||+++++-|+.-|+..|.|-.-.+.+. +..+.++.
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~~~ 108 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKKLN 108 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGGGC
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCCCC
Confidence 457999999999999999998865334333 34444443
No 27
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=24.49 E-value=80 Score=26.23 Aligned_cols=38 Identities=18% Similarity=0.009 Sum_probs=28.7
Q ss_pred EEecCCCcEEEEcCCcceeeecccccceeeecccCCcc
Q 044388 478 RCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 515 (717)
Q Consensus 478 r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVNFA~~~W 515 (717)
...-.||+++++-|+..|...|.|-.-...+.+..+.+
T Consensus 63 ~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~~ 100 (113)
T 2gu9_A 63 TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPA 100 (113)
T ss_dssp EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESCC
T ss_pred EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCC
Confidence 45678999999999999999998865555555544443
No 28
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=23.94 E-value=57 Score=32.06 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=33.1
Q ss_pred eEEEecCCCcEEEEcCCcceeeecccccceeee--cccCCccccchhH
Q 044388 476 VYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAV--NVAPVDWLPHGQI 521 (717)
Q Consensus 476 v~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAV--NFA~~~Wl~~g~~ 521 (717)
++++.=+||++|++-||.+|+-.+..-+...++ --..+.|.++.+.
T Consensus 126 ~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~~~W~~~~r~ 173 (191)
T 1vr3_A 126 WIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNRP 173 (191)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSCCCCCEESC
T ss_pred EEEEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCCCCccCCCCc
Confidence 556677899999999999998665444433343 4466789987653
No 29
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=23.79 E-value=88 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred EEecCCCcEEEEcCCcceeeeccc
Q 044388 478 RCVQNAGEFVLTFPRAYHSGFNCG 501 (717)
Q Consensus 478 r~vQ~pGEfVvtfP~aYH~gfn~G 501 (717)
...-.||++++.-|+.-|...|.|
T Consensus 73 ~~~l~~Gd~~~ip~~~~H~~~~~~ 96 (116)
T 2pfw_A 73 IKVLTAGDSFFVPPHVDHGAVCPT 96 (116)
T ss_dssp EEEECTTCEEEECTTCCEEEEESS
T ss_pred EEEeCCCCEEEECcCCceeeEeCC
Confidence 456789999999999999999998
No 30
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.43 E-value=27 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.656 Sum_probs=27.4
Q ss_pred cccccccccceeecccccccCCCceeehhchh-hhCCCC
Q 044388 614 ERECSVCLFDLHLSAVGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 614 ~~~C~~Ck~~~flS~V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
...|..|+.-+=|..+.|.|. .++|..|-- +...|.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg--~~FCs~HRy~e~H~C~ 61 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCG--NLFCGLHRYSDKHNCP 61 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTS--CEECSSSCSTTTTTCC
T ss_pred CCcChhhCCcccccCeecCCC--CEechhcCCCccCCCc
Confidence 458999999888888899975 689998853 224454
No 31
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.03 E-value=28 Score=28.83 Aligned_cols=36 Identities=28% Similarity=0.685 Sum_probs=27.3
Q ss_pred cccccccccceeecc---cccccCCCceeehhchh-hhCCCC
Q 044388 614 ERECSVCLFDLHLSA---VGCHCSSDRYACLIHAK-NFCSCA 651 (717)
Q Consensus 614 ~~~C~~Ck~~~flS~---V~C~c~~~~v~CL~Ha~-~lC~C~ 651 (717)
...|..|+.-+-|.. +.|.|. .++|..|-- +...|.
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg--~~FC~~HRy~e~H~C~ 54 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCG--YVFCMLHRLPEQHDCT 54 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSS--CCCCTTTCSTGGGTCS
T ss_pred CCcchhhCCeecccccCceEecCC--CEehhccCCccccCCc
Confidence 568999999999985 789885 689998853 234454
No 32
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=20.37 E-value=74 Score=25.80 Aligned_cols=32 Identities=16% Similarity=-0.044 Sum_probs=24.6
Q ss_pred EEecCCCcEEEEcCCcceeeecccccceeeec
Q 044388 478 RCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVN 509 (717)
Q Consensus 478 r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEAVN 509 (717)
...=.||++++.-|+..|...|.|-.-+..+.
T Consensus 68 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~ 99 (105)
T 1v70_A 68 EALLAPGMAAFAPAGAPHGVRNESASPALLLV 99 (105)
T ss_dssp EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence 44568999999999999999998754444333
Done!