BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044391
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 387 RQKFEQLQAMMPWY-----------TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQG 435
R +F LQ ++ +Y T PT +P AK+ W+ ++++ + V
Sbjct: 219 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS-KPQTQGLAKDAWEIPRESLRLEVK--- 274
Query: 436 RILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWKAE---SWRLELLI------- 476
L Q F +W+ W P + EA L +A+ R E L+
Sbjct: 275 --LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 332
Query: 477 DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERF 536
++ + E+M + + G +++R + V AAQI GMAYV + N R
Sbjct: 333 EEPIYIVTEYMSKGSLLDFLKGETGKYLRL----PQLVDMAAQIASGMAYVERMNYVHRD 388
Query: 537 RKISRIVIQENLSHTLTDPTEVWFFWARL 565
+ + I++ ENL + D F ARL
Sbjct: 389 LRAANILVGENLVCKVAD-----FGLARL 412
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 387 RQKFEQLQAMMPWY-----------TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQG 435
R +F LQ ++ +Y T PT +P AK+ W+ ++++ + V
Sbjct: 136 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS-KPQTQGLAKDAWEIPRESLRLEVK--- 191
Query: 436 RILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWKAE---SWRLELLI------- 476
L Q F +W+ W P + EA L +A+ R E L+
Sbjct: 192 --LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 477 DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERF 536
++ + E+M + + G +++R + V AAQI GMAYV + N R
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRL----PQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 537 RKISRIVIQENLSHTLTDPTEVWFFWARL 565
+ + I++ ENL + D F ARL
Sbjct: 306 LRAANILVGENLVCKVAD-----FGLARL 329
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 387 RQKFEQLQAMMPWY-----------TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQG 435
R +F LQ ++ +Y T PT +P AK+ W+ ++++ + V
Sbjct: 136 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS-KPQTQGLAKDAWEIPRESLRLEVK--- 191
Query: 436 RILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWKAE---SWRLELLI------- 476
L Q F +W+ W P + EA L +A+ R E L+
Sbjct: 192 --LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 477 DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERF 536
++ + E+M + + G +++R + V AAQI GMAYV + N R
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRL----PQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 537 RKISRIVIQENLSHTLTDPTEVWFFWARL 565
+ + I++ ENL + D F ARL
Sbjct: 306 LRAANILVGENLVCKVAD-----FGLARL 329
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 387 RQKFEQLQAMMPWY-----------TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQG 435
R +F LQ ++ +Y T PT +P AK+ W+ ++++ + V
Sbjct: 136 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPTS-KPQTQGLAKDAWEIPRESLRLEVK--- 191
Query: 436 RILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWKAE---SWRLELLI------- 476
L Q F +W+ W P + EA L +A+ R E L+
Sbjct: 192 --LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 477 DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERF 536
++ + E+M + + G +++R + V AAQI GMAYV + N R
Sbjct: 250 EEPIYIVGEYMSKGSLLDFLKGETGKYLRL----PQLVDMAAQIASGMAYVERMNYVHRD 305
Query: 537 RKISRIVIQENLSHTLTDPTEVWFFWARL 565
+ + I++ ENL + D F ARL
Sbjct: 306 LRAANILVGENLVCKVAD-----FGLARL 329
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 38/197 (19%)
Query: 387 RQKFEQLQAMMPWYTVQHPTII----------EPAVVKYAKEVWKFSKKAILVPVDPQGR 436
R +F LQ ++ +Y+ + +P AK+ W+ ++++ + V
Sbjct: 137 RTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKPQTQGLAKDAWEIPRESLRLEVK---- 192
Query: 437 ILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWKAE---SWRLELLI-------D 477
L Q F +W+ W P + EA L +A+ R E L+ +
Sbjct: 193 -LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 478 DIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFR 537
+ + E+M + + G +++R + V AAQI GMAYV + N R
Sbjct: 252 EPIYIVTEYMSKGSLLDFLKGEMGKYLRL----PQLVDMAAQIASGMAYVERMNYVHRDL 307
Query: 538 KISRIVIQENLSHTLTD 554
+ + I++ ENL + D
Sbjct: 308 RAANILVGENLVCKVAD 324
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ ++E+M + + G +++R + V
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRL----PQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ ++E+M + + G +++R + V
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRL----PQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLIDDIDATILEWMKEERYI-CLY--GGGDIEWIR----RFTTSAKAVAR 516
A+ R E L+ + A + E E YI C Y G +++++ ++ + V
Sbjct: 64 AQVMKKLRHEKLVQ-LYAVVSE---EPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 2 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 56
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ + E+M + + G +++R + V
Sbjct: 57 AQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRL----PQLVDM 112
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 113 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 156
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ ++E+M + + G +++R + V
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRL----PQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 506 RFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
++ + V AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 109 KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ + E+M + + G +++R + V
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRL----PQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 506 RFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
++ + V AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 100 KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 154
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 506 RFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
++ + V AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 109 KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 163
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 506 RFTTSAKAVARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
++ + V AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 98 KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 152
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 514 VARAAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
V AAQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 107 VDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 153
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 6 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 60
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ + E+M + + G +++R + V
Sbjct: 61 AQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRL----PQLVDM 116
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
+AQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 117 SAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 160
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 128 LSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLT 187
L L N QFW+ ++C + L+K + +LK+ + H K L++ +++ L+
Sbjct: 801 LDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYK-NLNSFFAIVMGLS 859
Query: 188 KCIVE-----FKQLPSQY 200
V +++LPS++
Sbjct: 860 NVAVSRLALTWEKLPSKF 877
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 128 LSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLT 187
L L N QFW+ ++C + L+K + +LK+ + H K L++ +++ L+
Sbjct: 801 LDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYK-NLNSFFAIVMGLS 859
Query: 188 KCIVE-----FKQLPSQY 200
V +++LPS++
Sbjct: 860 NVAVSRLALTWEKLPSKF 877
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 6 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 60
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ + E+M + + G +++R + V
Sbjct: 61 AQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRL----PQLVDM 116
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
+AQI GMAYV + N R + + I++ ENL + D F ARL
Sbjct: 117 SAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVAD-----FGLARL 160
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 135 LNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNALKPQLDALIKVMLDLTKCIVE-- 192
N QFW+ ++C + L+K + +LK+ + H K L++ +++ L+ V
Sbjct: 503 FNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYK-NLNSFFAIVMGLSNVAVSRL 561
Query: 193 ---FKQLPSQY 200
+++LPS++
Sbjct: 562 ALTWEKLPSKF 572
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 416 AKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI--WGNLAF-------PFSAEKEAALWK 466
AK+ W+ ++++ + V L Q F +W+ W P + EA L +
Sbjct: 9 AKDAWEIPRESLRLEVK-----LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE 63
Query: 467 AE---SWRLELLI-------DDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVAR 516
A+ R E L+ ++ + E+M + + G +++R + V
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRL----PQLVDM 119
Query: 517 AAQINLGMAYVGKNNAKERFRKISRIVIQENLSHTLTDPTEVWFFWARL 565
AAQI GMAYV + N R + I++ ENL + D F ARL
Sbjct: 120 AAQIASGMAYVERMNYVHRDLAAANILVGENLVCKVAD-----FGLARL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,636,327
Number of Sequences: 62578
Number of extensions: 768332
Number of successful extensions: 2013
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1996
Number of HSP's gapped (non-prelim): 25
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)