Query 044391
Match_columns 691
No_of_seqs 141 out of 177
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14576 SEO_N: Sieve element 100.0 6E-108 1E-112 845.9 22.4 281 15-299 1-286 (286)
2 PF14577 SEO_C: Sieve element 100.0 2E-97 4E-102 748.4 21.2 234 458-691 1-235 (235)
3 KOG2501 Thioredoxin, nucleored 99.9 2.9E-24 6.2E-29 206.7 11.5 132 317-468 15-152 (157)
4 cd03009 TryX_like_TryX_NRX Try 99.8 7.5E-20 1.6E-24 167.3 13.0 123 322-456 6-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.8 2.5E-18 5.5E-23 164.5 10.5 121 322-454 13-142 (146)
6 cd02964 TryX_like_family Trypa 99.8 7.5E-18 1.6E-22 155.3 13.1 126 317-456 2-132 (132)
7 PF13905 Thioredoxin_8: Thiore 99.5 2.8E-13 6E-18 117.1 11.0 90 334-437 1-95 (95)
8 cd02968 SCO SCO (an acronym fo 98.6 2.1E-07 4.5E-12 85.6 9.9 111 321-439 9-138 (142)
9 cd03012 TlpA_like_DipZ_like Tl 98.6 5.7E-07 1.2E-11 82.4 11.0 104 324-440 13-121 (126)
10 cd02967 mauD Methylamine utili 98.5 6.2E-07 1.3E-11 79.7 9.7 101 322-441 8-112 (114)
11 cd02966 TlpA_like_family TlpA- 98.5 8.9E-07 1.9E-11 75.9 9.0 104 322-440 7-113 (116)
12 PF08534 Redoxin: Redoxin; In 98.3 4.4E-06 9.6E-11 77.7 11.0 103 322-441 16-131 (146)
13 PRK03147 thiol-disulfide oxido 98.3 2.4E-06 5.1E-11 81.4 9.2 108 317-440 44-154 (173)
14 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 8.2E-06 1.8E-10 73.1 10.5 104 318-439 9-123 (124)
15 PRK14018 trifunctional thiored 98.2 5.7E-06 1.2E-10 94.1 10.9 108 320-440 44-155 (521)
16 cd03015 PRX_Typ2cys Peroxiredo 98.2 1.3E-05 2.9E-10 77.6 11.4 102 324-441 19-136 (173)
17 PTZ00256 glutathione peroxidas 98.1 4.3E-05 9.2E-10 75.3 12.9 116 321-440 27-163 (183)
18 cd03010 TlpA_like_DsbE TlpA-li 98.1 1.7E-05 3.8E-10 72.2 9.4 98 325-440 16-116 (127)
19 PLN02412 probable glutathione 98.1 3E-05 6.4E-10 75.4 10.8 117 321-441 16-147 (167)
20 cd03017 PRX_BCP Peroxiredoxin 98.0 2.2E-05 4.7E-10 72.1 8.9 101 323-440 12-125 (140)
21 cd02971 PRX_family Peroxiredox 98.0 6.1E-05 1.3E-09 69.0 11.9 106 320-441 8-126 (140)
22 cd02969 PRX_like1 Peroxiredoxi 98.0 2.3E-05 5E-10 75.4 9.4 110 320-440 10-125 (171)
23 TIGR02661 MauD methylamine deh 98.0 4.8E-05 1E-09 75.3 11.2 96 322-439 60-161 (189)
24 TIGR02540 gpx7 putative glutat 98.0 7.5E-05 1.6E-09 70.9 11.7 112 322-440 10-135 (153)
25 cd03011 TlpA_like_ScsD_MtbDsbE 98.0 3.1E-05 6.8E-10 69.7 8.1 95 323-438 9-106 (123)
26 PLN02919 haloacid dehalogenase 97.9 0.00011 2.4E-09 90.0 14.9 103 324-440 409-518 (1057)
27 PRK15412 thiol:disulfide inter 97.9 3.4E-05 7.3E-10 76.0 8.6 98 325-441 58-159 (185)
28 PLN02399 phospholipid hydroper 97.9 7.7E-05 1.7E-09 77.3 11.4 118 321-441 86-217 (236)
29 cd03018 PRX_AhpE_like Peroxire 97.9 5.9E-05 1.3E-09 70.1 9.6 108 319-441 12-130 (149)
30 cd00340 GSH_Peroxidase Glutath 97.9 1.9E-05 4.1E-10 75.0 6.1 114 322-440 10-138 (152)
31 TIGR00385 dsbE periplasmic pro 97.8 6.3E-05 1.4E-09 73.1 8.5 96 326-440 54-153 (173)
32 PRK10382 alkyl hydroperoxide r 97.8 9.7E-05 2.1E-09 73.8 9.7 105 323-440 20-134 (187)
33 TIGR03137 AhpC peroxiredoxin. 97.8 7.4E-05 1.6E-09 73.9 8.8 100 326-441 23-135 (187)
34 PRK09437 bcp thioredoxin-depen 97.8 8.5E-05 1.8E-09 70.1 8.8 104 320-440 16-135 (154)
35 PTZ00056 glutathione peroxidas 97.8 0.00014 3.1E-09 73.0 9.9 113 322-440 27-160 (199)
36 KOG2501 Thioredoxin, nucleored 97.7 1.8E-05 3.9E-10 77.4 3.2 46 489-536 32-83 (157)
37 cd02970 PRX_like2 Peroxiredoxi 97.6 0.00029 6.3E-09 64.9 9.1 101 322-439 10-144 (149)
38 cd03014 PRX_Atyp2cys Peroxired 97.6 0.00026 5.7E-09 65.7 8.8 105 320-441 12-126 (143)
39 PF02630 SCO1-SenC: SCO1/SenC; 97.6 0.00061 1.3E-08 67.0 11.3 114 316-439 34-169 (174)
40 PTZ00253 tryparedoxin peroxida 97.5 0.00052 1.1E-08 68.5 9.9 106 323-439 25-141 (199)
41 PRK00522 tpx lipid hydroperoxi 97.5 0.0007 1.5E-08 65.8 9.8 104 322-442 32-148 (167)
42 PRK13190 putative peroxiredoxi 97.4 0.00048 1E-08 69.2 8.6 99 326-440 19-132 (202)
43 PF13098 Thioredoxin_2: Thiore 97.4 0.00042 9.2E-09 61.5 7.1 92 333-439 4-97 (112)
44 cd02950 TxlA TRX-like protein 97.3 0.00083 1.8E-08 64.0 8.0 72 332-440 18-92 (142)
45 cd02955 SSP411 TRX domain, SSP 97.2 0.00081 1.8E-08 63.3 6.7 78 333-441 14-97 (124)
46 PTZ00137 2-Cys peroxiredoxin; 97.2 0.0013 2.8E-08 69.4 8.5 106 325-441 88-204 (261)
47 TIGR02738 TrbB type-F conjugat 97.1 0.0024 5.2E-08 62.1 9.4 80 332-439 48-133 (153)
48 cd03016 PRX_1cys Peroxiredoxin 97.1 0.0023 5E-08 64.2 9.0 103 326-440 16-132 (203)
49 PRK15000 peroxidase; Provision 97.1 0.0035 7.6E-08 63.1 10.0 92 333-440 33-140 (200)
50 TIGR02740 TraF-like TraF-like 97.0 0.00057 1.2E-08 72.0 4.4 88 325-442 157-247 (271)
51 PRK13728 conjugal transfer pro 97.0 0.0017 3.7E-08 65.2 7.2 93 316-440 55-152 (181)
52 cd02953 DsbDgamma DsbD gamma f 96.9 0.004 8.6E-08 55.0 8.3 71 333-438 10-87 (104)
53 PRK13599 putative peroxiredoxi 96.9 0.0043 9.3E-08 63.4 9.0 108 322-440 16-134 (215)
54 TIGR01626 ytfJ_HI0045 conserve 96.8 0.0034 7.3E-08 63.1 7.7 99 324-440 49-162 (184)
55 PRK10606 btuE putative glutath 96.8 0.018 4E-07 57.6 12.7 124 321-457 12-170 (183)
56 cd02951 SoxW SoxW family; SoxW 96.8 0.0017 3.6E-08 59.4 4.7 81 334-440 13-101 (125)
57 cd02959 ERp19 Endoplasmic reti 96.6 0.0026 5.6E-08 58.8 4.9 70 333-440 18-92 (117)
58 PRK13191 putative peroxiredoxi 96.6 0.0089 1.9E-07 61.0 9.1 99 326-440 24-139 (215)
59 PRK13189 peroxiredoxin; Provis 96.6 0.011 2.4E-07 60.6 9.8 99 326-440 26-141 (222)
60 cd02985 TRX_CDSP32 TRX family, 96.4 0.013 2.9E-07 52.3 7.7 68 333-438 14-84 (103)
61 cd02956 ybbN ybbN protein fami 96.0 0.03 6.5E-07 48.4 7.9 66 333-438 11-79 (96)
62 cd02999 PDI_a_ERp44_like PDIa 95.8 0.016 3.5E-07 51.8 5.2 66 330-434 14-82 (100)
63 cd02949 TRX_NTR TRX domain, no 95.7 0.042 9E-07 48.2 7.6 66 333-438 12-80 (97)
64 PRK10996 thioredoxin 2; Provis 95.5 0.048 1.1E-06 51.6 7.7 68 333-440 51-121 (139)
65 PF13905 Thioredoxin_8: Thiore 95.5 0.028 6.1E-07 48.5 5.5 49 490-540 1-54 (95)
66 cd02952 TRP14_like Human TRX-r 95.4 0.047 1E-06 51.3 7.1 77 333-441 20-107 (119)
67 cd02963 TRX_DnaJ TRX domain, D 95.3 0.071 1.5E-06 48.3 7.6 71 331-440 21-94 (111)
68 cd03005 PDI_a_ERp46 PDIa famil 95.2 0.048 1E-06 47.2 6.2 66 336-438 18-86 (102)
69 COG1999 Uncharacterized protei 95.2 0.24 5.1E-06 50.6 12.0 114 317-439 50-185 (207)
70 cd02948 TRX_NDPK TRX domain, T 95.2 0.082 1.8E-06 47.0 7.8 66 333-438 16-84 (102)
71 PTZ00051 thioredoxin; Provisio 95.2 0.058 1.3E-06 46.7 6.6 65 334-439 18-85 (98)
72 cd02960 AGR Anterior Gradient 95.1 0.032 6.9E-07 53.4 5.1 91 333-467 22-118 (130)
73 COG1225 Bcp Peroxiredoxin [Pos 95.0 0.19 4.2E-06 49.6 10.2 106 317-439 13-134 (157)
74 cd03000 PDI_a_TMX3 PDIa family 94.6 0.099 2.2E-06 46.3 6.5 65 332-432 13-80 (104)
75 cd03002 PDI_a_MPD1_like PDI fa 94.5 0.13 2.9E-06 45.2 7.1 66 334-436 18-86 (109)
76 PHA02278 thioredoxin-like prot 94.5 0.11 2.3E-06 47.4 6.6 70 333-438 13-85 (103)
77 PRK00293 dipZ thiol:disulfide 94.5 0.076 1.6E-06 61.7 6.9 71 333-439 473-549 (571)
78 PRK09381 trxA thioredoxin; Pro 94.4 0.15 3.3E-06 45.2 7.3 66 334-439 21-89 (109)
79 cd02993 PDI_a_APS_reductase PD 94.4 0.18 3.8E-06 45.4 7.6 68 333-436 20-90 (109)
80 cd02996 PDI_a_ERp44 PDIa famil 94.3 0.14 3E-06 45.6 6.9 70 334-437 18-90 (108)
81 cd02984 TRX_PICOT TRX domain, 94.3 0.15 3.2E-06 43.9 6.9 66 334-439 14-82 (97)
82 cd03003 PDI_a_ERdj5_N PDIa fam 94.3 0.19 4.1E-06 44.1 7.6 65 333-437 17-84 (101)
83 PTZ00062 glutaredoxin; Provisi 94.3 0.53 1.1E-05 48.3 11.7 133 335-540 18-160 (204)
84 cd02954 DIM1 Dim1 family; Dim1 93.9 0.16 3.4E-06 47.7 6.6 70 333-440 13-83 (114)
85 TIGR01068 thioredoxin thioredo 93.9 0.27 5.9E-06 41.9 7.6 65 334-438 14-81 (101)
86 TIGR01126 pdi_dom protein disu 93.9 0.29 6.3E-06 42.0 7.8 68 333-437 12-82 (102)
87 cd02958 UAS UAS family; UAS is 93.6 0.2 4.3E-06 45.4 6.5 71 333-440 16-93 (114)
88 TIGR02187 GlrX_arch Glutaredox 93.5 1.8 3.9E-05 43.8 13.9 153 334-537 20-180 (215)
89 cd03008 TryX_like_RdCVF Trypar 93.4 0.13 2.8E-06 50.0 5.3 52 484-539 21-83 (146)
90 cd02994 PDI_a_TMX PDIa family, 93.4 0.32 7E-06 42.5 7.3 66 332-437 15-83 (101)
91 cd02998 PDI_a_ERp38 PDIa famil 92.7 0.28 6.2E-06 42.3 5.9 67 334-436 18-87 (105)
92 cd03004 PDI_a_ERdj5_C PDIa fam 92.4 0.53 1.1E-05 41.3 7.3 65 334-437 19-86 (104)
93 cd02961 PDI_a_family Protein D 92.4 0.66 1.4E-05 38.9 7.6 65 334-435 15-82 (101)
94 cd02975 PfPDO_like_N Pyrococcu 92.0 0.62 1.3E-05 42.7 7.4 62 334-434 22-85 (113)
95 cd02957 Phd_like Phosducin (Ph 91.9 1.2 2.6E-05 40.4 9.1 86 334-463 24-110 (113)
96 cd02947 TRX_family TRX family; 91.5 0.72 1.6E-05 37.7 6.7 61 335-436 11-74 (93)
97 PF00085 Thioredoxin: Thioredo 91.3 0.34 7.3E-06 41.5 4.7 65 334-437 17-84 (103)
98 cd02997 PDI_a_PDIR PDIa family 91.3 0.52 1.1E-05 40.8 5.9 70 333-438 16-88 (104)
99 TIGR01295 PedC_BrcD bacterioci 90.5 0.89 1.9E-05 42.5 7.0 36 334-375 23-61 (122)
100 PTZ00102 disulphide isomerase; 90.4 0.58 1.3E-05 51.9 6.7 68 333-437 374-444 (477)
101 cd03001 PDI_a_P5 PDIa family, 89.8 1.4 2.9E-05 38.2 7.2 62 334-434 18-82 (103)
102 cd02992 PDI_a_QSOX PDIa family 89.8 1.8 4E-05 39.5 8.4 75 334-443 19-96 (114)
103 smart00594 UAS UAS domain. 89.8 1.1 2.5E-05 41.4 7.1 67 332-435 25-97 (122)
104 cd02989 Phd_like_TxnDC9 Phosdu 89.3 0.96 2.1E-05 41.5 6.1 65 334-439 22-89 (113)
105 cd02982 PDI_b'_family Protein 88.4 2.1 4.5E-05 37.2 7.4 61 334-433 12-77 (103)
106 cd02964 TryX_like_family Trypa 88.0 1.2 2.5E-05 41.3 5.8 60 475-538 3-69 (132)
107 cd03013 PRX5_like Peroxiredoxi 87.6 4.8 0.0001 38.9 10.0 100 324-440 18-136 (155)
108 TIGR01295 PedC_BrcD bacterioci 87.5 0.79 1.7E-05 42.8 4.4 45 484-530 17-62 (122)
109 COG0450 AhpC Peroxiredoxin [Po 87.4 3.1 6.8E-05 42.6 8.8 104 325-439 24-138 (194)
110 TIGR00411 redox_disulf_1 small 86.7 2.9 6.2E-05 34.8 7.0 34 338-375 3-39 (82)
111 cd02987 Phd_like_Phd Phosducin 86.4 2.2 4.8E-05 42.4 7.1 88 334-465 83-171 (175)
112 cd02962 TMX2 TMX2 family; comp 86.2 1.9 4.2E-05 42.1 6.5 37 334-373 47-86 (152)
113 PTZ00443 Thioredoxin domain-co 86.1 2 4.4E-05 44.6 6.9 65 334-438 52-119 (224)
114 cd03026 AhpF_NTD_C TRX-GRX-lik 86.0 3.3 7.1E-05 36.7 7.3 71 329-440 7-78 (89)
115 cd03006 PDI_a_EFP1_N PDIa fami 85.8 2 4.3E-05 39.8 6.1 67 332-437 27-96 (113)
116 KOG0907 Thioredoxin [Posttrans 85.3 2.7 5.9E-05 38.8 6.6 72 334-443 21-96 (106)
117 cd02965 HyaE HyaE family; HyaE 84.1 3 6.4E-05 39.1 6.4 68 334-440 27-98 (111)
118 cd03009 TryX_like_TryX_NRX Try 83.0 2.7 5.8E-05 38.5 5.7 54 481-538 11-70 (131)
119 PF00255 GSHPx: Glutathione pe 82.6 7.3 0.00016 36.3 8.3 52 322-376 9-62 (108)
120 cd01659 TRX_superfamily Thiore 82.4 6 0.00013 28.8 6.4 60 338-434 1-63 (69)
121 KOG0852 Alkyl hydroperoxide re 82.3 1.9 4E-05 43.8 4.5 132 316-473 16-177 (196)
122 PTZ00102 disulphide isomerase; 80.9 3.3 7.2E-05 46.0 6.4 69 333-437 48-119 (477)
123 PF14595 Thioredoxin_9: Thiore 79.8 4 8.7E-05 38.8 5.7 71 332-439 39-112 (129)
124 TIGR00412 redox_disulf_2 small 79.6 7.9 0.00017 33.0 6.9 16 420-438 45-60 (76)
125 TIGR01130 ER_PDI_fam protein d 78.3 4.6 9.9E-05 44.2 6.4 67 333-435 17-86 (462)
126 cd02955 SSP411 TRX domain, SSP 77.8 5.6 0.00012 37.7 6.0 44 487-530 12-59 (124)
127 cd02995 PDI_a_PDI_a'_C PDIa fa 77.6 8.1 0.00018 33.2 6.5 28 334-361 18-48 (104)
128 cd02973 TRX_GRX_like Thioredox 77.2 12 0.00027 30.2 7.2 33 339-374 4-37 (67)
129 TIGR02187 GlrX_arch Glutaredox 77.1 8.7 0.00019 38.9 7.6 21 331-351 130-150 (215)
130 cd03065 PDI_b_Calsequestrin_N 76.5 3.7 8E-05 38.7 4.4 24 415-439 78-101 (120)
131 smart00834 CxxC_CXXC_SSSS Puta 75.5 1.6 3.4E-05 32.8 1.3 30 654-684 10-40 (41)
132 cd02953 DsbDgamma DsbD gamma f 75.2 8.7 0.00019 33.8 6.2 45 486-530 7-55 (104)
133 TIGR00424 APS_reduc 5'-adenyly 75.2 8.3 0.00018 44.3 7.5 66 333-434 370-438 (463)
134 PF13899 Thioredoxin_7: Thiore 73.8 5.6 0.00012 34.0 4.5 19 333-351 16-34 (82)
135 cd02986 DLP Dim1 family, Dim1- 72.5 11 0.00024 35.6 6.4 38 333-374 13-51 (114)
136 KOG2792 Putative cytochrome C 72.0 13 0.00028 39.9 7.4 62 316-378 121-186 (280)
137 cd02950 TxlA TRX-like protein 71.2 9.9 0.00022 36.3 6.0 44 487-530 17-61 (142)
138 TIGR01130 ER_PDI_fam protein d 70.9 24 0.00053 38.6 9.7 41 488-530 362-408 (462)
139 PRK10996 thioredoxin 2; Provis 68.8 11 0.00025 35.6 5.8 46 483-530 45-93 (139)
140 PF00085 Thioredoxin: Thioredo 68.7 14 0.00031 31.4 5.9 46 485-532 11-60 (103)
141 PLN02309 5'-adenylylsulfate re 67.6 17 0.00037 41.8 7.8 67 333-435 364-433 (457)
142 PF13899 Thioredoxin_7: Thiore 67.5 8.9 0.00019 32.7 4.3 47 487-533 14-64 (82)
143 PF09723 Zn-ribbon_8: Zinc rib 65.9 3.3 7.1E-05 32.2 1.2 30 654-684 10-41 (42)
144 cd02949 TRX_NTR TRX domain, no 65.9 20 0.00043 31.3 6.4 45 488-532 11-56 (97)
145 PF06110 DUF953: Eukaryotic pr 64.7 11 0.00023 35.9 4.7 78 334-441 19-106 (119)
146 cd03010 TlpA_like_DsbE TlpA-li 64.0 14 0.00031 33.4 5.3 48 489-540 24-74 (127)
147 COG2143 Thioredoxin-related pr 63.7 13 0.00029 37.4 5.2 87 333-438 41-129 (182)
148 cd02947 TRX_family TRX family; 62.9 20 0.00043 29.1 5.5 43 487-530 7-50 (93)
149 PF13728 TraF: F plasmid trans 61.8 20 0.00044 36.9 6.4 86 327-442 113-201 (215)
150 cd02988 Phd_like_VIAF Phosduci 61.3 29 0.00063 35.2 7.4 86 334-465 102-188 (192)
151 cd02961 PDI_a_family Protein D 60.8 26 0.00056 29.2 5.9 47 484-530 9-58 (101)
152 cd03003 PDI_a_ERdj5_N PDIa fam 60.2 19 0.00042 31.4 5.2 47 485-531 13-60 (101)
153 cd02967 mauD Methylamine utili 59.6 19 0.00042 31.7 5.2 49 489-540 20-71 (114)
154 PF13098 Thioredoxin_2: Thiore 59.3 15 0.00032 32.4 4.3 49 488-536 3-55 (112)
155 PRK11657 dsbG disulfide isomer 59.0 64 0.0014 34.0 9.7 99 334-437 117-232 (251)
156 PRK03147 thiol-disulfide oxido 58.4 20 0.00043 34.1 5.4 52 489-540 60-113 (173)
157 cd02956 ybbN ybbN protein fami 58.2 22 0.00047 30.6 5.1 41 489-531 11-54 (96)
158 PHA02125 thioredoxin-like prot 57.4 29 0.00062 29.3 5.6 15 415-429 37-51 (75)
159 cd02966 TlpA_like_family TlpA- 56.0 27 0.00059 29.4 5.3 51 489-541 18-73 (116)
160 PF08209 Sgf11: Sgf11 (transcr 55.6 5.9 0.00013 29.8 1.0 14 669-682 3-16 (33)
161 TIGR00385 dsbE periplasmic pro 55.3 19 0.00042 35.0 4.8 46 488-538 61-109 (173)
162 cd02948 TRX_NDPK TRX domain, T 55.1 26 0.00056 31.1 5.2 45 485-531 12-60 (102)
163 cd03001 PDI_a_P5 PDIa family, 55.0 34 0.00074 29.4 5.9 43 489-531 17-60 (103)
164 TIGR01068 thioredoxin thioredo 53.2 22 0.00048 30.0 4.3 42 489-532 13-57 (101)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 52.8 1.3E+02 0.0028 29.9 10.2 97 334-438 77-184 (197)
166 PHA02278 thioredoxin-like prot 52.5 15 0.00033 33.4 3.4 42 487-530 11-55 (103)
167 PF02591 DUF164: Putative zinc 51.5 7.5 0.00016 31.7 1.1 26 655-680 27-56 (56)
168 TIGR02605 CxxC_CxxC_SSSS putat 50.5 10 0.00022 30.1 1.6 31 654-685 10-42 (52)
169 cd02951 SoxW SoxW family; SoxW 50.4 29 0.00063 31.6 4.9 49 483-531 6-59 (125)
170 COG0386 BtuE Glutathione perox 50.3 25 0.00054 35.2 4.6 52 321-375 12-65 (162)
171 TIGR01126 pdi_dom protein disu 48.9 32 0.00068 29.3 4.6 46 483-530 6-56 (102)
172 PRK15412 thiol:disulfide inter 48.4 29 0.00062 34.3 4.8 47 489-540 67-116 (185)
173 PTZ00051 thioredoxin; Provisio 48.2 36 0.00079 29.2 4.9 30 486-517 14-46 (98)
174 PF14026 DUF4242: Protein of u 48.2 33 0.00072 30.0 4.6 58 456-525 12-74 (77)
175 PF13778 DUF4174: Domain of un 48.0 1.3E+02 0.0028 28.2 8.8 87 328-440 2-94 (118)
176 cd03000 PDI_a_TMX3 PDIa family 47.5 33 0.00073 30.2 4.7 49 479-530 5-59 (104)
177 PRK10877 protein disulfide iso 46.3 1.4E+02 0.003 31.2 9.6 94 334-438 107-214 (232)
178 cd02954 DIM1 Dim1 family; Dim1 46.0 42 0.0009 31.7 5.2 42 489-532 13-57 (114)
179 PLN00410 U5 snRNP protein, DIM 45.7 60 0.0013 31.8 6.4 65 333-436 22-89 (142)
180 cd03004 PDI_a_ERdj5_C PDIa fam 44.5 48 0.001 28.9 5.2 42 488-531 17-61 (104)
181 cd02972 DsbA_family DsbA famil 43.0 1.6E+02 0.0035 24.1 8.0 85 339-432 2-91 (98)
182 cd02975 PfPDO_like_N Pyrococcu 42.5 52 0.0011 30.0 5.2 44 487-531 19-63 (113)
183 PF13408 Zn_ribbon_recom: Reco 42.1 12 0.00026 29.8 0.8 14 669-682 4-17 (58)
184 cd03002 PDI_a_MPD1_like PDI fa 41.9 41 0.00089 29.4 4.3 43 489-531 17-60 (109)
185 cd02984 TRX_PICOT TRX domain, 41.1 85 0.0018 26.7 6.1 41 490-530 14-55 (97)
186 cd03012 TlpA_like_DipZ_like Tl 40.9 59 0.0013 29.7 5.3 44 482-529 17-64 (126)
187 PRK09381 trxA thioredoxin; Pro 40.3 54 0.0012 28.9 4.9 43 487-531 18-63 (109)
188 cd03005 PDI_a_ERp46 PDIa famil 40.2 51 0.0011 28.3 4.6 43 485-530 12-60 (102)
189 cd02999 PDI_a_ERp44_like PDIa 39.8 57 0.0012 29.1 4.9 39 489-530 17-58 (100)
190 cd02960 AGR Anterior Gradient 39.8 51 0.0011 31.8 4.9 43 485-527 18-64 (130)
191 KOG1651 Glutathione peroxidase 39.8 41 0.00089 34.1 4.3 52 321-375 21-75 (171)
192 cd02959 ERp19 Endoplasmic reti 39.7 42 0.0009 31.0 4.2 30 487-516 16-46 (117)
193 PF04108 APG17: Autophagy prot 39.2 1.3E+02 0.0028 34.1 8.7 57 251-307 199-259 (412)
194 cd02996 PDI_a_ERp44 PDIa famil 38.3 66 0.0014 28.5 5.1 47 483-531 11-66 (108)
195 cd02995 PDI_a_PDI_a'_C PDIa fa 38.3 70 0.0015 27.3 5.2 42 489-530 17-61 (104)
196 KOG0191 Thioredoxin/protein di 38.2 2.1E+02 0.0045 31.7 10.0 68 334-438 47-115 (383)
197 cd02985 TRX_CDSP32 TRX family, 38.1 47 0.001 29.6 4.1 39 489-530 14-55 (103)
198 COG4481 Uncharacterized protei 37.8 16 0.00034 30.8 0.9 29 649-679 13-43 (60)
199 PF13913 zf-C2HC_2: zinc-finge 37.0 16 0.00034 25.6 0.7 13 669-681 1-13 (25)
200 cd02968 SCO SCO (an acronym fo 36.9 49 0.0011 30.3 4.2 45 483-531 17-69 (142)
201 cd02997 PDI_a_PDIR PDIa family 36.7 66 0.0014 27.6 4.7 37 482-518 9-46 (104)
202 COG3024 Uncharacterized protei 35.0 17 0.00036 31.4 0.7 16 667-682 4-19 (65)
203 cd02963 TRX_DnaJ TRX domain, D 34.2 70 0.0015 28.9 4.7 41 489-531 23-67 (111)
204 TIGR01206 lysW lysine biosynth 33.8 34 0.00074 28.5 2.3 28 654-683 7-35 (54)
205 KOG0910 Thioredoxin-like prote 33.7 46 0.001 33.1 3.6 43 334-376 61-119 (150)
206 COG4545 Glutaredoxin-related p 33.7 1.1E+02 0.0024 27.6 5.5 74 338-440 5-78 (85)
207 cd03011 TlpA_like_ScsD_MtbDsbE 33.0 61 0.0013 28.9 4.1 36 489-530 19-57 (123)
208 PRK02935 hypothetical protein; 32.8 24 0.00051 33.3 1.4 21 670-690 70-91 (110)
209 TIGR02740 TraF-like TraF-like 32.8 53 0.0011 35.1 4.2 39 489-531 165-206 (271)
210 COG1088 RfbB dTDP-D-glucose 4, 32.5 1.1E+02 0.0023 34.1 6.3 160 347-548 94-267 (340)
211 KOG1020 Sister chromatid cohes 32.3 1.9E+02 0.0042 38.1 9.3 117 179-324 1096-1215(1692)
212 TIGR02180 GRX_euk Glutaredoxin 31.2 76 0.0017 26.3 4.1 52 339-403 2-56 (84)
213 cd02998 PDI_a_ERp38 PDIa famil 31.2 74 0.0016 27.1 4.2 43 489-531 17-62 (105)
214 PF07191 zinc-ribbons_6: zinc- 31.0 30 0.00066 30.3 1.6 25 666-690 26-55 (70)
215 cd02989 Phd_like_TxnDC9 Phosdu 30.9 83 0.0018 28.8 4.6 48 484-532 16-64 (113)
216 cd02965 HyaE HyaE family; HyaE 30.5 1E+02 0.0022 29.0 5.2 50 483-532 20-72 (111)
217 TIGR00467 lysS_arch lysyl-tRNA 30.4 30 0.00065 40.4 2.0 26 664-689 162-196 (515)
218 TIGR02661 MauD methylamine deh 30.1 85 0.0018 31.2 4.9 40 489-532 73-115 (189)
219 PRK07218 replication factor A; 29.2 22 0.00049 40.5 0.7 9 325-333 57-65 (423)
220 PF10601 zf-LITAF-like: LITAF- 28.8 42 0.00092 28.6 2.2 23 665-687 2-24 (73)
221 KOG1088 Uncharacterized conser 27.9 29 0.00063 33.3 1.1 14 667-680 95-108 (124)
222 PF11023 DUF2614: Protein of u 27.9 26 0.00055 33.4 0.7 22 669-690 68-90 (114)
223 cd03006 PDI_a_EFP1_N PDIa fami 27.8 1.2E+02 0.0025 28.2 5.0 42 487-530 26-70 (113)
224 PF13248 zf-ribbon_3: zinc-rib 27.7 26 0.00056 24.6 0.5 12 670-681 2-13 (26)
225 TIGR00100 hypA hydrogenase nic 26.9 51 0.0011 30.9 2.5 44 641-688 43-89 (115)
226 PRK00750 lysK lysyl-tRNA synth 26.6 39 0.00085 39.3 2.1 27 664-690 169-206 (510)
227 PF14369 zf-RING_3: zinc-finge 26.2 45 0.00098 25.2 1.6 24 653-678 6-29 (35)
228 PF04423 Rad50_zn_hook: Rad50 26.0 27 0.00059 28.2 0.5 10 672-681 22-31 (54)
229 PF09237 GAGA: GAGA factor; I 25.8 28 0.00061 29.0 0.5 15 668-682 22-36 (54)
230 PF01396 zf-C4_Topoisom: Topoi 25.5 30 0.00064 26.6 0.6 12 671-682 2-13 (39)
231 COG3118 Thioredoxin domain-con 25.4 1.3E+02 0.0029 33.1 5.6 64 329-431 38-104 (304)
232 TIGR02739 TraF type-F conjugat 25.2 1.3E+02 0.0029 32.2 5.5 88 327-444 143-233 (256)
233 PF13453 zf-TFIIB: Transcripti 25.1 33 0.00072 26.3 0.8 12 672-683 1-12 (41)
234 cd02993 PDI_a_APS_reductase PD 24.6 95 0.0021 27.7 3.8 43 488-530 19-63 (109)
235 PRK00398 rpoP DNA-directed RNA 24.0 53 0.0012 25.7 1.8 12 670-681 21-32 (46)
236 KOG0190 Protein disulfide isom 23.0 70 0.0015 37.3 3.2 73 301-375 338-424 (493)
237 PF10013 DUF2256: Uncharacteri 22.9 36 0.00079 27.1 0.6 14 667-681 6-19 (42)
238 TIGR00411 redox_disulf_1 small 22.7 2.5E+02 0.0054 23.0 5.7 45 492-536 2-46 (82)
239 PRK13703 conjugal pilus assemb 22.7 1.7E+02 0.0036 31.3 5.7 87 328-444 137-226 (248)
240 COG1579 Zn-ribbon protein, pos 22.7 32 0.00069 36.5 0.4 8 671-678 222-229 (239)
241 PF06073 DUF934: Bacterial pro 22.6 2.5E+02 0.0054 26.6 6.1 76 384-465 7-85 (110)
242 KOG3425 Uncharacterized conser 22.3 1.2E+02 0.0027 29.4 4.1 44 487-530 22-76 (128)
243 PRK12775 putative trifunctiona 22.1 39 0.00085 42.5 1.0 22 670-691 796-817 (1006)
244 PF03190 Thioredox_DsbH: Prote 22.0 1.2E+02 0.0026 30.5 4.2 67 333-438 36-116 (163)
245 cd02970 PRX_like2 Peroxiredoxi 20.8 2.9E+02 0.0064 25.1 6.3 60 485-550 19-82 (149)
246 PF03884 DUF329: Domain of unk 20.4 34 0.00073 28.9 -0.0 14 669-682 1-14 (57)
247 smart00714 LITAF Possible memb 20.2 69 0.0015 26.9 1.8 20 668-687 1-20 (67)
No 1
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=5.6e-108 Score=845.86 Aligned_cols=281 Identities=55% Similarity=0.945 Sum_probs=269.4
Q ss_pred cCcchHHHHHHhhhcCCCCCccChHHhHHHHHHHHhhcccccccC--CCccccccccccCCCccccccccchhhhhhhhh
Q 044391 15 ATDDSAMMKQVQASHAPDGREVDVRPILSIIEDIFRRATPSTIDG--VGTREHVDALDNNASPAALSGMLDALSCDIRKI 92 (691)
Q Consensus 15 ~sdd~i~~~~I~~TH~~d~~~~Dv~~L~~~ve~Il~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~le~~~~~i~~I 92 (691)
+|||++||||||+||+||||+|||+|||++||||++||+++..+. ...+.+.++++++..++++.+++||++|+||||
T Consensus 1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI 80 (286)
T PF14576_consen 1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI 80 (286)
T ss_pred CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence 478888899999999999999999999999999999998874332 445666677778888889999999999999999
Q ss_pred hheeecccCCCchhhhHHHHHHHhhccCcchhHHHHHHHHHHHhhcchhhhcccCCCCHHHHHHHHHhCCchhhhhhccc
Q 044391 93 SCEISCKCSGGEEAHATTMDLFNILSVYSWDAKMVLSLAAFALNYGQFWLSAQLCNKNSLAKSMAVLKQLPNVLEHYNAL 172 (691)
Q Consensus 93 scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqlp~i~~~~~~l 172 (691)
||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|++|...+
T Consensus 81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~~~l 160 (286)
T PF14576_consen 81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHSDSL 160 (286)
T ss_pred HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHH---HHHHHHHHhhhhhhcccCCccccccccchHHHHHhhchhHHHHHHHHHHHHhhhhccccccccccccccch
Q 044391 173 KPQLDA---LIKVMLDLTKCIVEFKQLPSQYISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTD 249 (691)
Q Consensus 173 k~~~~~---Lvk~m~dV~~cIie~~~L~~~y~~~dvpal~~a~~~IP~~vYWtI~siVac~~qi~~l~~~~~e~~~s~~~ 249 (691)
||||++ |||+||||++||+||++||++||++|||+|++|++|||+||||||||+|||++||++||++||| +.++++
T Consensus 161 k~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~~ 239 (286)
T PF14576_consen 161 KPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTTE 239 (286)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccchh
Confidence 999998 9999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 044391 250 AWELASLAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHM 299 (691)
Q Consensus 250 ~~eLS~l~~Kl~~i~~~L~~~l~~c~~~I~e~~~~e~y~~l~~lf~t~~~ 299 (691)
+||||+|+|||++|++|||+||++|++|||+ +|+|++|+++|++||+
T Consensus 240 ~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~ 286 (286)
T PF14576_consen 240 AWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI 286 (286)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999 9999999999999984
No 2
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=2e-97 Score=748.40 Aligned_cols=234 Identities=52% Similarity=1.034 Sum_probs=231.4
Q ss_pred hhhHHHHHhhhccchhhhcccCchhhhhhhcCCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHh
Q 044391 458 AEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFR 537 (691)
Q Consensus 458 ~~r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~ 537 (691)
++|+|+||++|+|+|++|+|||||.|.+||++|||||||||+|++|||+||.++++||++|+++|||+||||+||||+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccCCCCcchhHHHHHHHHhHHHhhhcCCCCCCchhHHHHHHHhccCCCCCcEEEEecccchhhccchh
Q 044391 538 KISRIVIQENLSHTLTDPTEVWFFWARLESMLYSKLQHGATVEDDHIMQEVMTILSFDGSEQGWAIFWRGTHEMARAKGE 617 (691)
Q Consensus 538 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~sK~q~g~~~~~D~i~qei~~lLs~d~~~~GWavlskGs~~~~~ghG~ 617 (691)
+++++|+.|||||+|+|||+|||||+||||||+||+|+|+++++|+|||||++||||||+++|||||||||+++++|||+
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~ 160 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE 160 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcccccccccchHHHHHHhhhccC-CCCCCcccccCCCCCCCCceeecCCCCcccceeeeeccCCC
Q 044391 618 MAVDCMMEFEKWKDDADQMGFVAGLNNYLQRVH-TPRHCNRLILPDIHGPIPERLACAECGRTMEMFFMYRCCPE 691 (691)
Q Consensus 618 ~~~~tl~~f~~Wk~~v~~kGF~~Af~~y~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~YkCCh~ 691 (691)
+|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+|||||||||+||+||||||
T Consensus 161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd 235 (235)
T PF14577_consen 161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD 235 (235)
T ss_pred cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence 999999999999999999999999999999988 59999999999999999999999999999999999999997
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.91 E-value=2.9e-24 Score=206.68 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=118.1
Q ss_pred ceecCCCCceeecc-eecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391 317 PVVDGSSRTRVNIE-VLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ 392 (691)
Q Consensus 317 ~l~~g~~~~kV~Is-~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~ 392 (691)
..+.+.++..|.++ .|+||.|+|||||+||+|| ++++|+ .|++++++ +..|||||||. |+++++|++
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-~~~fEVvfVS~--------D~~~~~~~~ 85 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-AAPFEVVFVSS--------DRDEESLDE 85 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-CCceEEEEEec--------CCCHHHHHH
Confidence 44566778889998 6999999999999999886 558999 99999987 77999999984 899999999
Q ss_pred HhcC--CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhh
Q 044391 393 LQAM--MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAE 468 (691)
Q Consensus 393 ~~~~--MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e 468 (691)
++.. |||++|||.| +.++.+.+.|.+++||.|++++|+|.++..||+.+|..+|. .+-.+++.+|
T Consensus 86 y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~ew 152 (157)
T KOG2501|consen 86 YMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDEW 152 (157)
T ss_pred HHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHHH
Confidence 9985 9999999998 78999999999999999999999999999999999999998 5666777663
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=7.5e-20 Score=167.33 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=109.9
Q ss_pred CCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP 398 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP 398 (691)
.+|+.|++++++||.|+|+|.+.||++|. .+.|. +|++++.+ +.+++||+|++ |.+++.|.++.+.+|
T Consensus 6 ~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vv~is~--------d~~~~~~~~~~~~~~ 76 (131)
T cd03009 6 NDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-GKNFEIVFISW--------DRDEESFNDYFSKMP 76 (131)
T ss_pred cCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-CCCEEEEEEEC--------CCCHHHHHHHHHcCC
Confidence 46678999999999999999999998874 57899 99999865 56899999997 556689999999999
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccC
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPF 456 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPF 456 (691)
|+.+||++ ....+.+.+.|++.++|+++++|++|+++..||++|+..||.+||||
T Consensus 77 ~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 77 WLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred eeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 99999975 34556888899999999999999999999999999999999999998
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.76 E-value=2.5e-18 Score=164.48 Aligned_cols=121 Identities=17% Similarity=0.277 Sum_probs=104.5
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhcc----CCCCeeEEEEecccCCCCCChhhHHHHHHHh
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAR----EEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ 394 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~----~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~ 394 (691)
.+-.+++++.|+||.|+|+|.|.||++| +++.|. +|++++++ .+.+||||.|+. |++++.+..+.
T Consensus 13 ~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~--------D~~~~~~~~f~ 84 (146)
T cd03008 13 LDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM--------DQSEQQQESFL 84 (146)
T ss_pred hhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC--------CCCHHHHHHHH
Confidence 3445678899999999999999999886 568899 99999854 245799999995 55667799999
Q ss_pred cCCC--eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccc
Q 044391 395 AMMP--WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAF 454 (691)
Q Consensus 395 ~~MP--WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AF 454 (691)
+.|+ |+++|+.+ .....+.+.|++.++|++++|||+|+++..|++..|..+|.+||
T Consensus 85 ~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 85 KDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred HHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 9998 99999986 23446778899999999999999999999999999999999987
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.76 E-value=7.5e-18 Score=155.34 Aligned_cols=126 Identities=23% Similarity=0.324 Sum_probs=110.1
Q ss_pred ceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391 317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL 393 (691)
Q Consensus 317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~ 393 (691)
+|+||+ +.|++++++||.|+|+|.+.||++| +.+.|+ +|++++.+ +.+++||+|++ |++.+.++.+
T Consensus 2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~v~vi~Vs~--------d~~~~~~~~~ 70 (132)
T cd02964 2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-GKNFEIVFVSR--------DRSEESFNEY 70 (132)
T ss_pred ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-CCCeEEEEEec--------CCCHHHHHHH
Confidence 578888 5799999999999999999999887 457799 99999754 35799999986 4556677888
Q ss_pred hcCC-CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHH-hCcccccC
Q 044391 394 QAMM-PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWI-WGNLAFPF 456 (691)
Q Consensus 394 ~~~M-PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~-wG~~AFPF 456 (691)
.+.+ +|+.+++.+ ......+.+.|++.++|+.+++|++|++++.|+..++.. ||+.||||
T Consensus 71 ~~~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 71 FSEMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HhcCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8888 899999965 345678889999999999999999999999999999999 99999998
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.48 E-value=2.8e-13 Score=117.10 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=77.8
Q ss_pred CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC--CeeeecCCCCC
Q 044391 334 RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM--PWYTVQHPTII 408 (691)
Q Consensus 334 gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M--PWyAVp~~d~i 408 (691)
||.++|+|.+.||++| +++.|. +|+++++ +.+++||+||+ |++++.++++.+.+ ||+.+|+.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~~-- 68 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFDD-- 68 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETTT--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeCc--
Confidence 8999999999999776 568899 9999985 68899999997 67788899988888 999999987
Q ss_pred chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
.....+.+.|++.++|.+++|||+|++
T Consensus 69 --~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 69 --DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp --HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred --chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 447788999999999999999999986
No 8
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.61 E-value=2.1e-07 Score=85.64 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=79.0
Q ss_pred CCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCC-hhhHHHHHHHhc
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWD-EGYRQKFEQLQA 395 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~-D~d~~~F~~~~~ 395 (691)
..+++.++++.++||.++|+|.+.||++ | ++..|. +|++++++..+++++|+|++ |. ..+ .+..++|-+-..
T Consensus 9 ~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~-d~--~~d~~~~~~~~~~~~~ 85 (142)
T cd02968 9 DQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV-DP--ERDTPEVLKAYAKAFG 85 (142)
T ss_pred cCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE-CC--CCCCHHHHHHHHHHhC
Confidence 3456679999999999999999999976 6 557799 99999765116799999997 31 001 122344433332
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCCc--------------eEEEEeCCCCceec
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKK--------------AILVPVDPQGRILN 439 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~i--------------P~LVvL~pqGkv~~ 439 (691)
.+|..+..++ +..+.+.+.|++... |..+|+||+|+++.
T Consensus 86 -~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 138 (142)
T cd02968 86 -PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR 138 (142)
T ss_pred -CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence 5788887754 345567777776544 57999999999975
No 9
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.56 E-value=5.7e-07 Score=82.37 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=71.9
Q ss_pred CceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc--CCC
Q 044391 324 RTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA--MMP 398 (691)
Q Consensus 324 ~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~--~MP 398 (691)
++.|++++++||.|+|+|-+.||++| +++.|+ +|++.+. .+++||.|+.-+.+ .+++.+....+.. .++
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFA---FERDLANVKSAVLRYGIT 86 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccc---cccCHHHHHHHHHHcCCC
Confidence 45699999999999999999999776 567799 9999873 46899988751110 1222333333222 344
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
|..+- |. ...+.+.|++.+.|..+++|++|+++..
T Consensus 87 ~p~~~-----D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 87 YPVAN-----DN--DYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCEEE-----CC--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 43322 22 2344566899999999999999999864
No 10
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.51 E-value=6.2e-07 Score=79.69 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=67.8
Q ss_pred CCCceeecceec-CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391 322 SSRTRVNIEVLR-RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM 397 (691)
Q Consensus 322 ~~~~kV~Is~L~-gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M 397 (691)
.+|+.+.++.++ ||.|+|+|-+.||++| +++.|. +|++.+ .++.|+-|+ | .+.+..+.+.+.+
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~--~-------~~~~~~~~~~~~~ 74 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS--D-------GEKAEHQRFLKKH 74 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe--C-------CCHHHHHHHHHHh
Confidence 456689999998 9999999999999776 456788 877653 347777553 2 2233344433333
Q ss_pred CeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391 398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N 441 (691)
+.-..|+ ..+. .+.+.|++.+.|..+++|++|+++..+
T Consensus 75 ~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 GLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 3211221 1122 256779999999999999999998654
No 11
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.46 E-value=8.9e-07 Score=75.88 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCceeecceecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP 398 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP 398 (691)
.++..++.++++||.++|+|.+.||+.|.. ..|. +++++. +.++.++.|++ |. .+.+..+.|-+-+. -|
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~~v~~-d~---~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK---DDGVEVVGVNV-DD---DDPAAVKAFLKKYG-IT 78 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC---CCCeEEEEEEC-CC---CCHHHHHHHHHHcC-CC
Confidence 455679999999999999999999987743 4566 777664 45688998876 31 12333333333222 34
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
|.-+. +. .+.+.+.|++.+.|.++++||+|+++..
T Consensus 79 ~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 43322 11 3456778999999999999999999854
No 12
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.33 E-value=4.4e-06 Score=77.68 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCCceeecceecCcEEEEEEecC-CCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSL-DLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM 397 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M 397 (691)
.+|+.++++.++||.|+|.|-+. |||+| +++.|. +|++.+ +.++++|.|...+ +....+|-+- ...
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~---~~~v~~v~v~~~~------~~~~~~~~~~-~~~ 85 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK---DKGVDVVGVSSDD------DPPVREFLKK-YGI 85 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH---TTTCEEEEEEESS------SHHHHHHHHH-TTT
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc---cCceEEEEecccC------CHHHHHHHHh-hCC
Confidence 77889999999999999999988 99887 457788 988876 4469999998743 3345556544 445
Q ss_pred CeeeecCCCCCchHHHHHHHHhhCcC---------CceEEEEeCCCCceeccc
Q 044391 398 PWYTVQHPTIIEPAVVKYAKEVWKFS---------KKAILVPVDPQGRILNQN 441 (691)
Q Consensus 398 PWyAVp~~d~i~~~~~r~ike~f~~~---------~iP~LVvL~pqGkv~~~N 441 (691)
+|..+--++ ..+.+.|++. +.|..+++|++|+++...
T Consensus 86 ~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 86 NFPVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TSEEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred CceEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 555533332 2345558988 999999999999998754
No 13
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.32 E-value=2.4e-06 Score=81.36 Aligned_cols=108 Identities=13% Similarity=0.183 Sum_probs=75.9
Q ss_pred ceecCCCCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391 317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL 393 (691)
Q Consensus 317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~ 393 (691)
.-+...+|+.+++++++||.++|+|-+.||+.|. .+.|. ++++++. .++++|-|+. |...+...++
T Consensus 44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~--------d~~~~~~~~~ 112 (173)
T PRK03147 44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNV--------DETELAVKNF 112 (173)
T ss_pred cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEc--------CCCHHHHHHH
Confidence 3444567778999999999999999999998774 46788 9988863 4688999876 2333344444
Q ss_pred hcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
...++ ++|+-..+. .+.+.+.|++.+.|..+++|++|+++..
T Consensus 113 ~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 113 VNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 33332 233321121 2355567999999999999999999854
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.25 E-value=8.2e-06 Score=73.09 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=75.4
Q ss_pred eecCCCCceeecceecCcEEEEEEecC-CCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391 318 VVDGSSRTRVNIEVLRRKHVLLLISSL-DLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL 393 (691)
Q Consensus 318 l~~g~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~ 393 (691)
-+...+++.+++++|+||.++|+|-+. ||+.| ++.-|. .|++++. .+..+|.|+. | +.++.++|.+.
T Consensus 9 ~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~-d-----~~~~~~~~~~~ 79 (124)
T PF00578_consen 9 TLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGIST-D-----DPEEIKQFLEE 79 (124)
T ss_dssp EEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEES-S-----SHHHHHHHHHH
T ss_pred EeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeeccc-c-----cccchhhhhhh
Confidence 344566788999999999999999888 99776 456688 9999983 4799999986 3 13344556554
Q ss_pred hc-CCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceec
Q 044391 394 QA-MMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILN 439 (691)
Q Consensus 394 ~~-~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~ 439 (691)
.. .+|++.= ++ ..+.+.|+.. ..|..+++||+|+++.
T Consensus 80 ~~~~~~~~~D--~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 80 YGLPFPVLSD--PD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HTCSSEEEEE--TT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hccccccccC--cc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 43 4444333 22 2344558888 9999999999999874
No 15
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.22 E-value=5.7e-06 Score=94.13 Aligned_cols=108 Identities=10% Similarity=0.013 Sum_probs=78.8
Q ss_pred cCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCC-hhhHHHHHHHhc
Q 044391 320 DGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWD-EGYRQKFEQLQA 395 (691)
Q Consensus 320 ~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~-D~d~~~F~~~~~ 395 (691)
...+|..+.++ +||.|+|.|-|.||++| +++.|. +|++.+ ..+++||-|.+ + .++ +.+.+.|.++.+
T Consensus 44 ~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k---~~~v~VI~Vs~-~---~~~~e~~~~~~~~~~~ 114 (521)
T PRK14018 44 ADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK---FSSANLITVAS-P---GFLHEKKDGDFQKWYA 114 (521)
T ss_pred ecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc---cCCeEEEEEec-c---cccccccHHHHHHHHH
Confidence 33445567766 99999999999999887 568899 999876 34688888864 2 232 445677888887
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
.+.|..+|.-- |. -..+.+.|+++++|++++||++|+++..
T Consensus 115 ~~~y~~~pV~~--D~--~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 115 GLDYPKLPVLT--DN--GGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred hCCCcccceec--cc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 77665444321 22 2345677999999999999999999854
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.20 E-value=1.3e-05 Score=77.60 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=73.6
Q ss_pred CceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-----
Q 044391 324 RTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ----- 394 (691)
Q Consensus 324 ~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~----- 394 (691)
+..+++++++||.|+|+|- +.||+.| +++.|+ .|+++++ .++.||.|+. |. ....+.|.+..
T Consensus 19 ~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~-d~-----~~~~~~~~~~~~~~~~ 89 (173)
T cd03015 19 FKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVST-DS-----HFSHLAWRNTPRKEGG 89 (173)
T ss_pred ceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEec-CC-----HHHHHHHHHhhhhhCC
Confidence 3679999999999999887 7888655 567799 9999974 4699999985 41 33334565543
Q ss_pred -cCCCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391 395 -AMMPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN 441 (691)
Q Consensus 395 -~~MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N 441 (691)
...||-.+.-++ .+. .+.|++. .+|..+||||+|+++..+
T Consensus 90 ~~~~~f~~l~D~~---~~~----~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 90 LGKINFPLLADPK---KKI----SRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred ccCcceeEEECCc---hhH----HHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 356776665443 233 3346765 578999999999998776
No 17
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.10 E-value=4.3e-05 Score=75.26 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=74.2
Q ss_pred CCCCceeecceecCcEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEeccc--CCCCCChhhHHHHHH--
Q 044391 321 GSSRTRVNIEVLRRKHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVD--RSIAWDEGYRQKFEQ-- 392 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd--~s~~W~D~d~~~F~~-- 392 (691)
..+|+.|++++++||.| ++++-+.||++| +++.|+ +|++.+. .+++||-||.-+ ...+++.++-.+|-.
T Consensus 27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~ 103 (183)
T PTZ00256 27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDEPEIKEYVQKK 103 (183)
T ss_pred cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 45677899999999965 455579999776 678899 9999974 459999998511 112233344455532
Q ss_pred HhcCCCeeee--cCCCCCchHHHHHHHHhh--------CcCCceE---EEEeCCCCceecc
Q 044391 393 LQAMMPWYTV--QHPTIIEPAVVKYAKEVW--------KFSKKAI---LVPVDPQGRILNQ 440 (691)
Q Consensus 393 ~~~~MPWyAV--p~~d~i~~~~~r~ike~f--------~~~~iP~---LVvL~pqGkv~~~ 440 (691)
+.-+.|=++- +-+. ...+..+++++.. .+.++|. .+++|++|+++..
T Consensus 104 ~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred cCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 2222232210 1111 1134666777765 4668995 6999999999974
No 18
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.10 E-value=1.7e-05 Score=72.16 Aligned_cols=98 Identities=15% Similarity=0.009 Sum_probs=66.9
Q ss_pred ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391 325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT 401 (691)
Q Consensus 325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA 401 (691)
..++.++++||.|+|+|-+.||++|. .+.|. .+++ . +++||-|+.-| +.++-++|-+. ...||..
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~-----~-~~~vv~v~~~~-----~~~~~~~~~~~-~~~~~~~ 83 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ-----G-RVPIYGINYKD-----NPENALAWLAR-HGNPYAA 83 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh-----c-CcEEEEEECCC-----CHHHHHHHHHh-cCCCCce
Confidence 45888999999999999999998874 45565 5433 1 38888887522 12233334322 3347765
Q ss_pred ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
+-... . ..+.+.|++.++|..++||++|+++..
T Consensus 84 ~~~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 84 VGFDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred EEECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 54422 1 245566999999999999999998854
No 19
>PLN02412 probable glutathione peroxidase
Probab=98.06 E-value=3e-05 Score=75.40 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=79.9
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCC-CC-CChhh-HHHH-HHH
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRS-IA-WDEGY-RQKF-EQL 393 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s-~~-W~D~d-~~~F-~~~ 393 (691)
..+|+++.++.++||.|+|+|-+.||++| +.+-|+ .|++.+. .+++||=||.-+.. .+ -+.++ .+.| +.+
T Consensus 16 d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
T PLN02412 16 DIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF 92 (167)
T ss_pred CCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHHHHHHHHHcc
Confidence 45677899999999999999999999776 568899 9999984 45999999862100 01 12222 3445 555
Q ss_pred hcCCCeeee--cCCCCCchHHHHHHHHh----hC--cCCceEEEEeCCCCceeccc
Q 044391 394 QAMMPWYTV--QHPTIIEPAVVKYAKEV----WK--FSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 394 ~~~MPWyAV--p~~d~i~~~~~r~ike~----f~--~~~iP~LVvL~pqGkv~~~N 441 (691)
.-+.|+++- +-+.. .....++++.. +. +...|+-.++|++|+++..-
T Consensus 93 ~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 93 KAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred CCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 667788752 22211 22445565543 12 55679999999999999764
No 20
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.04 E-value=2.2e-05 Score=72.15 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=72.3
Q ss_pred CCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391 323 SRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP 398 (691)
Q Consensus 323 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP 398 (691)
+|+.+++++++||.++|+|- +.|||.| +++.|. .|+++++ .+++||.|+. | +.+.-.+|-+.+ .++
T Consensus 12 ~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~-d-----~~~~~~~~~~~~-~~~ 81 (140)
T cd03017 12 DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSP-D-----SVESHAKFAEKY-GLP 81 (140)
T ss_pred CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcC-C-----CHHHHHHHHHHh-CCC
Confidence 46679999999999999887 5777655 567788 9998873 4689999985 4 234445554432 456
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcCCc---------eEEEEeCCCCceecc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFSKK---------AILVPVDPQGRILNQ 440 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~ 440 (691)
|-.+-- .. +.+.+.|++... |..+++|++|+++..
T Consensus 82 ~~~l~D-----~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 82 FPLLSD-----PD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred ceEEEC-----Cc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 554432 22 345667899887 999999999999864
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.04 E-value=6.1e-05 Score=69.02 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred cCCCCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391 320 DGSSRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA 395 (691)
Q Consensus 320 ~g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~ 395 (691)
.+.+++.+++++++||.++|+|- +.||+.| +++-|. .|++++ ..+++||.|+. | +....++|-+-..
T Consensus 8 ~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~---~~~~~~i~is~-d-----~~~~~~~~~~~~~ 78 (140)
T cd02971 8 PATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA---KGGAEVLGVSV-D-----SPFSHKAWAEKEG 78 (140)
T ss_pred ccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH---HCCCEEEEEeC-C-----CHHHHHHHHhccc
Confidence 34567789999999998888877 7898655 566788 999996 34699999985 3 2333455555443
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCCce---------EEEEeCCCCceeccc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------ILVPVDPQGRILNQN 441 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~N 441 (691)
..||-.+--+ . +.+.+.|++...| ..+++|++|+++...
T Consensus 79 ~~~~~~l~D~-----~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 79 GLNFPLLSDP-----D--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred CCCceEEECC-----C--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 5666555322 2 2556678887665 899999999998653
No 22
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.03 E-value=2.3e-05 Score=75.43 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=74.5
Q ss_pred cCCCCceeeccee-cCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh-
Q 044391 320 DGSSRTRVNIEVL-RRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ- 394 (691)
Q Consensus 320 ~g~~~~kV~Is~L-~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~- 394 (691)
...++..|.++.+ +||.|+|+|=+.|||.| ++.-|. +|++.++ .++++|-|++-+....+.| +.+....+.
T Consensus 10 ~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d-~~~~~~~~~~ 85 (171)
T cd02969 10 PDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPED-SPENMKAKAK 85 (171)
T ss_pred cCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCcccccccc-CHHHHHHHHH
Confidence 3345668999998 99999999999999876 456688 9988863 4699999986221111111 233444333
Q ss_pred -cCCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 395 -AMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 395 -~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
...||-.+- |.. +.+.+.|++.+.|..+++||+|+++-.
T Consensus 86 ~~~~~~~~l~-----D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 86 EHGYPFPYLL-----DET--QEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HCCCCceEEE-----CCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 234433222 222 356677999999999999999999854
No 23
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.00 E-value=4.8e-05 Score=75.34 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCCceeec--ceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc
Q 044391 322 SSRTRVNI--EVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA 395 (691)
Q Consensus 322 ~~~~kV~I--s~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~ 395 (691)
.+|+.+.+ +.++||.|+|+|.+.|||+| +++.+. +|++ .++.+++|+. | ++++.++|-. +.-
T Consensus 60 ~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~------~~~~vv~Is~-~-----~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 60 FDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARA------EETDVVMISD-G-----TPAEHRRFLKDHEL 127 (189)
T ss_pred CCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHh------cCCcEEEEeC-C-----CHHHHHHHHHhcCC
Confidence 45677998 45799999999999999876 456677 7754 2477899972 2 3444455543 322
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
+.|.|.. + ..+.+.|++.++|..+++|++|++..
T Consensus 128 ~~~~~~~------~----~~i~~~y~v~~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 128 GGERYVV------S----AEIGMAFQVGKIPYGVLLDQDGKIRA 161 (189)
T ss_pred Ccceeec------h----hHHHHhccCCccceEEEECCCCeEEE
Confidence 3444441 1 23445689999999999999999985
No 24
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.98 E-value=7.5e-05 Score=70.88 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEec--ccCCCCCChhhHHHHHHHhcC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPI--VDRSIAWDEGYRQKFEQLQAM 396 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpi--Vd~s~~W~D~d~~~F~~~~~~ 396 (691)
.+|+.+++++++||.|+|+|-+.|||+| +++.|. +|++.+. .+++||-||. +..+.+=+.++..+|-+-...
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~ 86 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESFARRNYG 86 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999876 668899 9999973 4699999985 211100012334555432123
Q ss_pred CCeeeec-----CCCCCchHHHHHHHHhhCcCCceE----EEEeCCCCceecc
Q 044391 397 MPWYTVQ-----HPTIIEPAVVKYAKEVWKFSKKAI----LVPVDPQGRILNQ 440 (691)
Q Consensus 397 MPWyAVp-----~~d~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~ 440 (691)
.++..+. -++ -....+++.+ +..+.|. ..++|++|+++..
T Consensus 87 ~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 87 VTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred CCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence 3332221 111 1123455443 3456897 9999999999864
No 25
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.95 E-value=3.1e-05 Score=69.70 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=65.5
Q ss_pred CCceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCe
Q 044391 323 SRTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPW 399 (691)
Q Consensus 323 ~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPW 399 (691)
+|+.+..+.++||.++|+|-+.||++|. .+.|. +|++ ++++-|+. |+. +.+..++|-+-+ .+||
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------~~~i~i~~-~~~---~~~~~~~~~~~~-~~~~ 75 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------YPVVSVAL-RSG---DDGAVARFMQKK-GYGF 75 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------CCEEEEEc-cCC---CHHHHHHHHHHc-CCCc
Confidence 4467999999999999999999998774 46687 7765 67788875 210 123334444433 2555
Q ss_pred eeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 400 YTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 400 yAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
-.+.-++ ..+.+.|++.+.|+++++|++| +.
T Consensus 76 ~~~~d~~-------~~~~~~~~i~~~P~~~vid~~g-i~ 106 (123)
T cd03011 76 PVINDPD-------GVISARWGVSVTPAIVIVDPGG-IV 106 (123)
T ss_pred cEEECCC-------cHHHHhCCCCcccEEEEEcCCC-eE
Confidence 4443221 2466679999999999999999 54
No 26
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=0.00011 Score=90.04 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=73.1
Q ss_pred Cceeec-ceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHH---HHHHHhcC
Q 044391 324 RTRVNI-EVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQ---KFEQLQAM 396 (691)
Q Consensus 324 ~~kV~I-s~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~---~F~~~~~~ 396 (691)
+..+.+ ++++||.|+|.|.+.||++| +.+.|+ +|++.+ +.+|+||-|+..+- -++++.+ .|- ....
T Consensus 409 g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~---~~~~~vvgV~~~~~---D~~~~~~~~~~~~-~~~~ 481 (1057)
T PLN02919 409 TAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK---DQPFTVVGVHSAKF---DNEKDLEAIRNAV-LRYN 481 (1057)
T ss_pred CccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC---CCCeEEEEEecccc---cccccHHHHHHHH-HHhC
Confidence 455776 58999999999999999887 568899 999976 34599999975321 0122222 333 2456
Q ss_pred CCeeeecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 397 MPWYTVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 397 MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
++|..+.-.+ . .+-+.|+++++|+.+++|++|+++..
T Consensus 482 i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 482 ISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred CCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence 7776554322 2 34456999999999999999999743
No 27
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.93 E-value=3.4e-05 Score=76.01 Aligned_cols=98 Identities=16% Similarity=0.019 Sum_probs=65.3
Q ss_pred ceeeccee-cCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391 325 TRVNIEVL-RRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY 400 (691)
Q Consensus 325 ~kV~Is~L-~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy 400 (691)
+.+..+.+ +||.|+|+|-+.||++| +.+.|. +++ .+++||-|+.-| +..+..+|-+- ..+||.
T Consensus 58 ~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~-----~~~~~~~~~~~-~~~~~~ 124 (185)
T PRK15412 58 QFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKD-----DRQKAISWLKE-LGNPYA 124 (185)
T ss_pred ccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCC-----CHHHHHHHHHH-cCCCCc
Confidence 44666665 79999999999999887 456677 543 258999987511 12223344332 245666
Q ss_pred eecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391 401 TVQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 401 AVp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N 441 (691)
.+.+.. . ..+.+.|++.+.|..+++|++|+++...
T Consensus 125 ~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 125 LSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred eEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 444322 1 1244578999999999999999988543
No 28
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.92 E-value=7.7e-05 Score=77.33 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.5
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCC--ChhhHHHHH--HH
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAW--DEGYRQKFE--QL 393 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W--~D~d~~~F~--~~ 393 (691)
..+|+.|.+++++||.|+|.|-+.||++| +++.|+ +|++.+. .+++||-|++-+....- +.++..+|- .+
T Consensus 86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 45667899999999999999999999876 678899 9999874 45999999962110000 123445563 33
Q ss_pred hcCCCeeeecCCC-CCchHHHHHHHHhhC------cCCceEEEEeCCCCceeccc
Q 044391 394 QAMMPWYTVQHPT-IIEPAVVKYAKEVWK------FSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 394 ~~~MPWyAVp~~d-~i~~~~~r~ike~f~------~~~iP~LVvL~pqGkv~~~N 441 (691)
....|-++=.-.+ ..-.+..++++..+. ++..|.-+++|++|+++..-
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 3344432100000 001223455554432 35679999999999999743
No 29
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.92 E-value=5.9e-05 Score=70.10 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=71.8
Q ss_pred ecCCCCceeecceecC-cEEEEEE-ecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH
Q 044391 319 VDGSSRTRVNIEVLRR-KHVLLLI-SSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL 393 (691)
Q Consensus 319 ~~g~~~~kV~Is~L~g-K~VlL~f-Sal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~ 393 (691)
+...+|+.+++++++| |.+.|+| .+.||+.| +++.|+ +|+++++ .++.+|.|+. | +.+..++|-+-
T Consensus 12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~-d-----~~~~~~~~~~~ 82 (149)
T cd03018 12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISV-D-----SPFSLRAWAEE 82 (149)
T ss_pred ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecC-C-----CHHHHHHHHHh
Confidence 3345677899999999 8777666 58999776 556789 9999873 4588999984 3 23344555443
Q ss_pred hcCCCeeeecCCCCCchHHHHHHHHhhCcC----Cc--eEEEEeCCCCceeccc
Q 044391 394 QAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----KK--AILVPVDPQGRILNQN 441 (691)
Q Consensus 394 ~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----~i--P~LVvL~pqGkv~~~N 441 (691)
+ ..+|..+- |....+.+.+.|++. ++ |..+++|++|+++-..
T Consensus 83 ~-~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 83 N-GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred c-CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 3 35554432 211124455567876 33 3899999999988653
No 30
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.90 E-value=1.9e-05 Score=74.98 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCceeecceecCcEEEEEEecCCCC-hhhhHHHH-HHHHhhccCCCCeeEEEEecccCC--CCC-ChhhHHHHHHH--h
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLS-DEEILVLH-LYREHKAREEFDYAIVWLPIVDRS--IAW-DEGYRQKFEQL--Q 394 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~-~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s--~~W-~D~d~~~F~~~--~ 394 (691)
.+|+.+++++++||.|+|+|=+.||+ ..+++.|+ +|++.+. .+++||-|++ |.. .+= +.++-++|-+- .
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~---~~~~vv~v~~-~~~~~~~~~~~~~~~~f~~~~~~ 85 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEGLEALYEKYKD---RGLVVLGFPC-NQFGGQEPGSNEEIKEFCETNYG 85 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcCCCCchHHHHHHHHHHHHhcC---CCEEEEEecc-CccccCCCCCHHHHHHHHHHhcC
Confidence 45678999999999999999999997 23678899 9999873 4589999875 110 000 11234566432 2
Q ss_pred cCCCeeeec--CCCCCchHHHHHHHHhh------CcCCceEEEEeCCCCceecc
Q 044391 395 AMMPWYTVQ--HPTIIEPAVVKYAKEVW------KFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 395 ~~MPWyAVp--~~d~i~~~~~r~ike~f------~~~~iP~LVvL~pqGkv~~~ 440 (691)
-+.|.++-+ ..... ....+++.... ..+..|+.+++|++|+++..
T Consensus 86 ~~fp~~~d~d~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 86 VTFPMFAKIDVNGENA-HPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred CCceeeeeEeccCCCC-ChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 244544321 11100 11222211111 12223389999999999864
No 31
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.83 E-value=6.3e-05 Score=73.12 Aligned_cols=96 Identities=19% Similarity=0.042 Sum_probs=63.3
Q ss_pred eeeccee-cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391 326 RVNIEVL-RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT 401 (691)
Q Consensus 326 kV~Is~L-~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA 401 (691)
.+..+.+ +||.|+|+|.+.||++|. .+.|. +++ .+++||.|+.-+ +.++..+|-+- ..+||..
T Consensus 54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~-----~~~~~~~~~~~-~~~~f~~ 120 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKD-----QSQNALKFLKE-LGNPYQA 120 (173)
T ss_pred ccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCC-----ChHHHHHHHHH-cCCCCce
Confidence 3555565 799999999999998874 35555 542 248999997511 12222344322 2467655
Q ss_pred ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
+.+.. . ..+.+.|++.+.|..+++|++|+++..
T Consensus 121 v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 121 ILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred EEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 44422 1 234556899999999999999998854
No 32
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.81 E-value=9.7e-05 Score=73.81 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=74.0
Q ss_pred CCceeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCC
Q 044391 323 SRTRVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMP 398 (691)
Q Consensus 323 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MP 398 (691)
.-..+.+++++||.|+|+|= +.||+.| ++.-|. .|+++++ .+++||-||. |+ -...+.|-+-...+
T Consensus 20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~-D~-----~~~~~a~~~~~~~~- 89 (187)
T PRK10382 20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVST-DT-----HFTHKAWHSSSETI- 89 (187)
T ss_pred cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeC-CC-----HHHHHHHHHhhccc-
Confidence 34568889999999988887 8888554 677799 9999874 4699999995 42 34456675443222
Q ss_pred eeeecCCCCCchHHHHHHHHhhCc----CCc--eEEEEeCCCCceecc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKF----SKK--AILVPVDPQGRILNQ 440 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~----~~i--P~LVvL~pqGkv~~~ 440 (691)
..+|||=+.|. -+.+.+.|++ .+. |..+|+||+|++...
T Consensus 90 -~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 90 -AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred -cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 34455433332 3566677887 366 999999999998654
No 33
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.81 E-value=7.4e-05 Score=73.91 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=69.6
Q ss_pred eeecceecCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHh---cCCC
Q 044391 326 RVNIEVLRRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQ---AMMP 398 (691)
Q Consensus 326 kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~---~~MP 398 (691)
.++.++++||.|+|+|= +.||+.| +++-|. .|+++++ .+++||.||. |+ ....+.|.... ..+|
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~-D~-----~~~~~~~~~~~~~~~~l~ 93 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVST-DT-----HFVHKAWHDTSEAIGKIT 93 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeC-CC-----HHHHHHHHhhhhhccCcc
Confidence 57888999999999998 8898665 667799 9999974 4689999985 41 23445554332 2445
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceeccc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQN 441 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~N 441 (691)
+..+ .|. ...+.+.|++. ..|..+++|++|++....
T Consensus 94 fpll-----sD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 94 YPML-----GDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred eeEE-----ECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 3322 222 23455567875 369999999999998654
No 34
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.81 E-value=8.5e-05 Score=70.12 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=70.8
Q ss_pred cCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391 320 DGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA 395 (691)
Q Consensus 320 ~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~ 395 (691)
-..+|..+++++++||.++|+|=+.| ||.| ++..|. .|+++++ .++++|-|++ | +....++|-+-.
T Consensus 16 ~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~-d-----~~~~~~~~~~~~- 85 (154)
T PRK09437 16 PDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGIST-D-----KPEKLSRFAEKE- 85 (154)
T ss_pred eCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcC-C-----CHHHHHHHHHHh-
Confidence 34566789999999999999998765 5435 556788 9999874 4589999875 3 344445554433
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCCc------------eEEEEeCCCCceecc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSKK------------AILVPVDPQGRILNQ 440 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~i------------P~LVvL~pqGkv~~~ 440 (691)
..||-.+.-++ +.+.+.|++... |..++|||+|+++..
T Consensus 86 ~~~~~~l~D~~-------~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 86 LLNFTLLSDED-------HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred CCCCeEEECCC-------chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 45665543221 234455776543 778999999999865
No 35
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.76 E-value=0.00014 Score=72.96 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccC-CCCC-ChhhHHHHHHHhcC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDR-SIAW-DEGYRQKFEQLQAM 396 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~-s~~W-~D~d~~~F~~~~~~ 396 (691)
.+|+.|+++.++||.|+|.|=+.||++| +.+.|+ +|++.+. .+++||-||+-+. ..+. +.++-++|-. ...
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~ 102 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNTKDIRKFND-KNK 102 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCHHHHHHHHH-HcC
Confidence 4567899999999999999999999776 678899 9999873 4599999986210 0011 1233455543 234
Q ss_pred CCeeeec-----CCCCCchHHHHHHHH----hhCcCCc-------eEEEEeCCCCceecc
Q 044391 397 MPWYTVQ-----HPTIIEPAVVKYAKE----VWKFSKK-------AILVPVDPQGRILNQ 440 (691)
Q Consensus 397 MPWyAVp-----~~d~i~~~~~r~ike----~f~~~~i-------P~LVvL~pqGkv~~~ 440 (691)
++|..+- -.+ ..++.+++++ .++..+. |+-+++|++|+++..
T Consensus 103 ~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 103 IKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred CCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 5554321 111 2345666653 2333322 378999999999953
No 36
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.75 E-value=1.8e-05 Score=77.42 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=38.8
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEecccChHHHH
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKNNAKERF 536 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkdn~~e~v 536 (691)
+||.|+||||+ +|| |+||+.+..+.+.. +.+||+||||+|...+..
T Consensus 32 ~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~ 83 (157)
T KOG2501|consen 32 QGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL 83 (157)
T ss_pred CCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence 89999999999 998 99999998876653 457999999999765444
No 37
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.62 E-value=0.00029 Score=64.94 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=64.7
Q ss_pred CCCceeecceec--CcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391 322 SSRTRVNIEVLR--RKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAM 396 (691)
Q Consensus 322 ~~~~kV~Is~L~--gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~ 396 (691)
.+|+.++++++. ++.|++||-+.|||.| +++-|. .|++++ +.+++||-|+. | +......|-+-. .
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~---~~~v~vv~V~~-~-----~~~~~~~~~~~~-~ 79 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELD---ALGVELVAVGP-E-----SPEKLEAFDKGK-F 79 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHH---hcCeEEEEEeC-C-----CHHHHHHHHHhc-C
Confidence 456679998875 3456666679999776 567799 999987 34589999975 2 122222343321 2
Q ss_pred CCeeeecCCCCCchHHHHHHHHhhCcC-----------------------------CceEEEEeCCCCceec
Q 044391 397 MPWYTVQHPTIIEPAVVKYAKEVWKFS-----------------------------KKAILVPVDPQGRILN 439 (691)
Q Consensus 397 MPWyAVp~~d~i~~~~~r~ike~f~~~-----------------------------~iP~LVvL~pqGkv~~ 439 (691)
.||..+- |.. +.+.+.|++. ..|..+|+|++|++.-
T Consensus 80 ~~~p~~~-----D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 80 LPFPVYA-----DPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred CCCeEEE-----CCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 2332222 322 2344557773 7999999999999874
No 38
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.61 E-value=0.00026 Score=65.73 Aligned_cols=105 Identities=7% Similarity=-0.009 Sum_probs=66.9
Q ss_pred cCCCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc
Q 044391 320 DGSSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA 395 (691)
Q Consensus 320 ~g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~ 395 (691)
...+|..+++++++||.|.|+|=+.| |++| +++.|. .|++.+ +++||-|+. | +....++|.+-.
T Consensus 12 ~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----~~~vi~Is~-d-----~~~~~~~~~~~~- 79 (143)
T cd03014 12 VTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----NTVVLTISA-D-----LPFAQKRWCGAE- 79 (143)
T ss_pred ECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----CCEEEEEEC-C-----CHHHHHHHHHhc-
Confidence 34456789999999999999998888 4445 566788 888842 588888875 3 133345554433
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceeccc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILNQN 441 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~N 441 (691)
....+|.-. |.. .+.+.+.|++.. .|...++|++|+++...
T Consensus 80 --~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 80 --GVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred --CCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 221112111 111 123344567643 69999999999998654
No 39
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.59 E-value=0.00061 Score=66.96 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=79.7
Q ss_pred CceecCCCCceeecceecCcEEEEEEecCCCCh-h--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCCh--hhHHH
Q 044391 316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSD-E--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDE--GYRQK 389 (691)
Q Consensus 316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D--~d~~~ 389 (691)
.+-+...+|+.|..++|+||.++++|-=..||. | .+..|. +.++|.++ +.++++|+|++ | |..| +..++
T Consensus 34 ~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISv-D---P~~DTp~~L~~ 108 (174)
T PF02630_consen 34 DFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISV-D---PERDTPEVLKK 108 (174)
T ss_dssp T-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEES-S---TTTC-HHHHHH
T ss_pred CcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEe-C---CCCCCHHHHHH
Confidence 344445567789999999999999999988854 4 345688 99999877 78999999996 6 4444 33466
Q ss_pred HHHHhcCCCeeeecCCCCCchHHHHHHHHhhCcC----------------CceEEEEeCCCCceec
Q 044391 390 FEQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS----------------KKAILVPVDPQGRILN 439 (691)
Q Consensus 390 F~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~----------------~iP~LVvL~pqGkv~~ 439 (691)
|-+.+. -.|..+-+. .+.++.+.+.|++. .-..+.++||+|++..
T Consensus 109 Y~~~~~-~~~~~ltg~----~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 109 YAKKFG-PDFIGLTGS----REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HHHCHT-TTCEEEEEE----HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HHHhcC-CCcceeEeC----HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 766554 356666552 35566676666643 2347889999999874
No 40
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.52 E-value=0.00052 Score=68.47 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCceeecceecCcEEEEEEecCC-C--ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-HhcCC
Q 044391 323 SRTRVNIEVLRRKHVLLLISSLD-L--SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQAMM 397 (691)
Q Consensus 323 ~~~kV~Is~L~gK~VlL~fSal~-~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~~M 397 (691)
++..+.+++++||.|+|+|-..+ | |+.++.-|. .|+++++ .+++||.||. |+ ......+.. .....
T Consensus 25 ~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~-d~-----~~~~~~~~~~~~~~~ 95 (199)
T PTZ00253 25 SFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSM-DS-----EYAHLQWTLQERKKG 95 (199)
T ss_pred CCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeC-CC-----HHHHHHHHhChHhhC
Confidence 44579999999999999998644 5 444566688 9999974 4699999996 42 222333321 11110
Q ss_pred CeeeecCCCCCchHHHHHHHHhhCcC----C--ceEEEEeCCCCceec
Q 044391 398 PWYTVQHPTIIEPAVVKYAKEVWKFS----K--KAILVPVDPQGRILN 439 (691)
Q Consensus 398 PWyAVp~~d~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~ 439 (691)
-.-.++||-..|. .+.+.+.|++- + .|..++|||+|++..
T Consensus 96 ~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 96 GLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred CccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 0112344433333 34556667874 3 589999999999876
No 41
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.46 E-value=0.0007 Score=65.81 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=70.5
Q ss_pred CCCceeecceecCcEEEEEEecCC-CChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLD-LSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM 397 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M 397 (691)
.+|+.|++++++||.|+|+|=+.| |++| +++-|+ .|++++ +++||=||. | +....++|-+-. ..
T Consensus 32 ~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----~~~vv~vs~-D-----~~~~~~~f~~~~-~~ 99 (167)
T PRK00522 32 NDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----NTVVLCISA-D-----LPFAQKRFCGAE-GL 99 (167)
T ss_pred CCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----CcEEEEEeC-C-----CHHHHHHHHHhC-CC
Confidence 456689999999999999999988 6555 667788 888862 589999985 4 134456676543 23
Q ss_pred CeeeecCCCCCchHHHHHHHHhhCcCCce---------EEEEeCCCCceecccH
Q 044391 398 PWYTVQHPTIIEPAVVKYAKEVWKFSKKA---------ILVPVDPQGRILNQNA 442 (691)
Q Consensus 398 PWyAVp~~d~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~NA 442 (691)
|- ++-+.|.. -+.+.+.|++.+.| ...++|++|+++....
T Consensus 100 ~~----~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 100 EN----VITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CC----ceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 31 11111211 22445568887777 9999999999986653
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.44 E-value=0.00048 Score=69.20 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred eeecceecCcEEEE-EEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHH----HHHhc-C
Q 044391 326 RVNIEVLRRKHVLL-LISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKF----EQLQA-M 396 (691)
Q Consensus 326 kV~Is~L~gK~VlL-~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F----~~~~~-~ 396 (691)
.+++++++||.|.| +|-+.|||.| |+.-|. .|+++++ .+++||-||+ |+ ......| .+-.. .
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~-D~-----~~~~~~w~~~~~~~~g~~ 89 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSV-DS-----IYSHIAWLRDIEERFGIK 89 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeC-CC-----HHHHHHHHHhHHHhcCCC
Confidence 68999999998777 5789998665 677799 9999984 4699999986 31 2222233 22222 2
Q ss_pred CCeeeecCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391 397 MPWYTVQHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ 440 (691)
Q Consensus 397 MPWyAVp~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~ 440 (691)
+||-.+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 90 ~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 90 IPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred ceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 3443333 222 3455668874 48999999999998743
No 43
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.42 E-value=0.00042 Score=61.48 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=54.8
Q ss_pred cCcEEEEEEecCCCChhhhH--HHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 333 RRKHVLLLISSLDLSDEEIL--VLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~--~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+||+++++|++.|||.|.-. .+.-++.+....++++.++.+.+- .+++ ..+.-+...=+ +++ .
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~----~~~----~ 68 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID------DSRD-ESEAVLDFDGQ----KNV----R 68 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH------SHHH-HHHHHHSHTCH----SSC----H
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC------Cccc-ccccccccccc----hhh----h
Confidence 48999999999999988642 243444444333457888888872 2222 22221110000 111 1
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
...+.+.+.|++.+-|++|++|++|+++.
T Consensus 69 ~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 69 LSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp HHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred HHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 34457888899999999999999999774
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.31 E-value=0.00083 Score=63.97 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=52.9
Q ss_pred ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
-+||.|+|+|.+.||++|. .+.|. ++++.+ ..+.++.|-+ | .++ +.
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~v-d-------~~~--~~----------------- 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNV-D-------NPK--WL----------------- 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEc-C-------Ccc--cH-----------------
Confidence 3589999999999998875 36677 777754 3477888754 2 111 10
Q ss_pred chHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
.+.+.|+++++|++++++++|+++..
T Consensus 67 ------~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 67 ------PEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred ------HHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 13356899999999999999998854
No 45
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.20 E-value=0.00081 Score=63.28 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=50.3
Q ss_pred cCcEEEEEEecCCCChhhhHH---H--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDLSDEEILV---L--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~~---L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
++|.|+|+|++.||+.|...- + . +-+.+. .+|-.|-| |. |+.. ...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~Vkv---D~-----~~~~-~~~--------------- 65 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKV---DR-----EERP-DVD--------------- 65 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEE---eC-----CcCc-HHH---------------
Confidence 489999999999998886321 1 1 444443 35655544 32 1111 011
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N 441 (691)
....++....|+..|.|++|+++|+|+.++..
T Consensus 66 ---~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 66 ---KIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred ---HHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 11233445578999999999999999999876
No 46
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.17 E-value=0.0013 Score=69.39 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=69.3
Q ss_pred ceeeccee-cCcEEEEEEe-cCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHH-hcCCC
Q 044391 325 TRVNIEVL-RRKHVLLLIS-SLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQL-QAMMP 398 (691)
Q Consensus 325 ~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~-~~~MP 398 (691)
..++++++ +||.|+|||= +.||++| |+.-|. .|++.++ .+++||=||+ |+ -...+.|.+. ...+-
T Consensus 88 ~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~-Ds-----~~~h~aw~~~~~~~~g 158 (261)
T PTZ00137 88 VQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSV-DS-----PFSHKAWKELDVRQGG 158 (261)
T ss_pred eEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEC-CC-----HHHHHHHHhhhhhhcc
Confidence 45899997 8987777776 7888655 677799 9999984 4699999996 41 2244556542 22211
Q ss_pred eeeecCCCCCchHHHHHHHHhhCcC-----CceEEEEeCCCCceeccc
Q 044391 399 WYTVQHPTIIEPAVVKYAKEVWKFS-----KKAILVPVDPQGRILNQN 441 (691)
Q Consensus 399 WyAVp~~d~i~~~~~r~ike~f~~~-----~iP~LVvL~pqGkv~~~N 441 (691)
-..++||=+.|.. +.+.+.|++. ..|...+|||+|++....
T Consensus 159 ~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 159 VSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred ccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 1222332222222 4556668875 489999999999988654
No 47
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.13 E-value=0.0024 Score=62.12 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=52.6
Q ss_pred ecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
..++.++++|-+.||++| +.+.|+ +|++. +++|+.|++ | +...+ +.| +.++.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~------~~~Vi~Vs~-d------~~~~~-------~fp---~~~~~-- 102 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF------GLPVYAFSL-D------GQGLT-------GFP---DPLPA-- 102 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc------CCcEEEEEe-C------CCccc-------ccc---cccCC--
Confidence 345666999999999876 568899 98774 388999986 3 21111 112 22221
Q ss_pred chHHHHHHHHhh---CcCCceEEEEeCCCCceec
Q 044391 409 EPAVVKYAKEVW---KFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 409 ~~~~~r~ike~f---~~~~iP~LVvL~pqGkv~~ 439 (691)
+.. .+...| ++.++|+.+++|++|+++-
T Consensus 103 ~~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPE---VMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 111 233445 7899999999999988643
No 48
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.08 E-value=0.0023 Score=64.23 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred eeecceecC-cEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-HhcCCCe
Q 044391 326 RVNIEVLRR-KHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQAMMPW 399 (691)
Q Consensus 326 kV~Is~L~g-K~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~~MPW 399 (691)
++.+++++| |.| +++|-+.|||.| ++.-|. .|+++++ .+.+|+-||+ | +.....+|.+ ..+.+.
T Consensus 16 ~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~-D-----~~~~~~~~~~~i~~~~~- 85 (203)
T cd03016 16 PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSV-D-----SVESHIKWIEDIEEYTG- 85 (203)
T ss_pred cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEEC-C-----CHHHHHHHHhhHHHhcC-
Confidence 589999998 655 446778888665 567799 9999984 4589999996 3 1333444533 333333
Q ss_pred eeecCCCCCchHHHHHHHHhhCcC----C----ceEEEEeCCCCceecc
Q 044391 400 YTVQHPTIIEPAVVKYAKEVWKFS----K----KAILVPVDPQGRILNQ 440 (691)
Q Consensus 400 yAVp~~d~i~~~~~r~ike~f~~~----~----iP~LVvL~pqGkv~~~ 440 (691)
+.++||-..|.. +.+.+.|++. + .|..+||||+|++...
T Consensus 86 ~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 86 VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 556666444432 4566678865 2 3569999999998754
No 49
>PRK15000 peroxidase; Provisional
Probab=97.05 E-value=0.0035 Score=63.14 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=63.1
Q ss_pred cCcEEEEEEecC-CC--ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc-----CCCeeee
Q 044391 333 RRKHVLLLISSL-DL--SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA-----MMPWYTV 402 (691)
Q Consensus 333 ~gK~VlL~fSal-~~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~-----~MPWyAV 402 (691)
+||.|+|+|=.. || |+.|+.-|. .|++++++ +++||=||. | +....+.|.+ +.. .+|+..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---g~~vigvS~-D-----~~~~~~~w~~~~~~~~g~~~i~fpll 103 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---GVEVVGVSF-D-----SEFVHNAWRNTPVDKGGIGPVKYAMV 103 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEEC-C-----CHHHHHHHHhhHHHhCCccccCceEE
Confidence 799999999887 55 445777899 99999843 599999995 4 1333344433 221 2344444
Q ss_pred cCCCCCchHHHHHHHHhhCcC------CceEEEEeCCCCceecc
Q 044391 403 QHPTIIEPAVVKYAKEVWKFS------KKAILVPVDPQGRILNQ 440 (691)
Q Consensus 403 p~~d~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~ 440 (691)
--++ +.+.+.|++. ..|..++|||+|++...
T Consensus 104 sD~~-------~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 104 ADVK-------REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred ECCC-------cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 3222 3455668887 69999999999998874
No 50
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.04 E-value=0.00057 Score=72.02 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred ceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeee
Q 044391 325 TRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYT 401 (691)
Q Consensus 325 ~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyA 401 (691)
+...++.|+||.++++|.+.||++|. .++|. ++++. .++|+.|++ | .+.. ..+|-+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------g~~Vi~Vsv-D-------~~~~------~~fp~~- 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------GIEVLPVSV-D-------GGPL------PGFPNA- 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------CcEEEEEeC-C-------CCcc------ccCCcc-
Confidence 34788999999999999999998874 47788 77664 289999986 3 2111 112221
Q ss_pred ecCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccH
Q 044391 402 VQHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNA 442 (691)
Q Consensus 402 Vp~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA 442 (691)
-. + +.+.+.|+++++|++++++++|+.+..-+
T Consensus 216 --~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~ 247 (271)
T TIGR02740 216 --RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG 247 (271)
T ss_pred --cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence 11 1 22467799999999999999766554433
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.02 E-value=0.0017 Score=65.16 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=65.8
Q ss_pred CceecCCCCceeecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391 316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ 392 (691)
Q Consensus 316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~ 392 (691)
++-|.=.+|+.+.++.++ +++|-+.|||+| +.+.|+ +|++. .|+|+-|++ | .+.
T Consensus 55 ~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------g~~Vi~Vs~-D-------~~~----- 111 (181)
T PRK13728 55 PRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------GFSVFPYTL-D-------GQG----- 111 (181)
T ss_pred CCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------CCEEEEEEe-C-------CCC-----
Confidence 455555577889999998 667888999776 568899 99885 289999986 3 111
Q ss_pred HhcCCCeeeecCCCCCchHHHHHHHHhhCc--CCceEEEEeCCCCceecc
Q 044391 393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKF--SKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~ 440 (691)
.+.||-.++.. -..+.+.|+. .++|+.+++|++|+++-+
T Consensus 112 --------~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 112 --------DTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred --------CCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 03555444211 1345667884 699999999999998643
No 52
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.95 E-value=0.004 Score=55.02 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=48.9
Q ss_pred cCcEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
+||.|+++|++.||++|.- +.+ . +.+.++ +++.++.|-+ ++.+
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~-------~~~~-------------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADW-------TKND-------------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEec-------CCCC--------------------
Confidence 4899999999999988854 333 3 555553 2466666542 2211
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCC-CCcee
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDP-QGRIL 438 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~ 438 (691)
.....+.+.|++.++|++++++| +|+.+
T Consensus 59 ----~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 59 ----PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred ----HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 12235567789999999999999 89876
No 53
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.88 E-value=0.0043 Score=63.38 Aligned_cols=108 Identities=13% Similarity=0.044 Sum_probs=70.9
Q ss_pred CCCceeecceecCcEE-EEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCC
Q 044391 322 SSRTRVNIEVLRRKHV-LLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMM 397 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~V-lL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~M 397 (691)
..|+.+..++++||.| +++|=+.|||.| |+.-|. .|++.+++ +++||=||. | +......|.+....+
T Consensus 16 ~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---gv~vigIS~-D-----~~~~~~~w~~~i~~~ 86 (215)
T PRK13599 16 TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---NTELIGLSV-D-----QVFSHIKWVEWIKDN 86 (215)
T ss_pred CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---CCEEEEEeC-C-----CHHHHHHHHHhHHHh
Confidence 4566666789999975 678888888665 667799 99999844 589999985 4 233455565432211
Q ss_pred CeeeecCCCCCchHHHHHHHHhhCc-------CCceEEEEeCCCCceecc
Q 044391 398 PWYTVQHPTIIEPAVVKYAKEVWKF-------SKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 398 PWyAVp~~d~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~~~ 440 (691)
-=+.++||=..|. -+.+.+.|++ ...|...|+||+|++...
T Consensus 87 ~~~~i~fPil~D~--~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 87 TNIAIPFPVIADD--LGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred cCCCCceeEEECC--CchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 0013444432222 1244556776 368999999999999876
No 54
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.84 E-value=0.0034 Score=63.12 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=67.9
Q ss_pred CceeecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeE------EEEecccCCCCCChhhHHHH----
Q 044391 324 RTRVNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAI------VWLPIVDRSIAWDEGYRQKF---- 390 (691)
Q Consensus 324 ~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEI------VwIpiVd~s~~W~D~d~~~F---- 390 (691)
-+.++.+.|+||.+++-|-|.||++|+ .+.|. + ++ .+|.+ +=|.. |. ..|. -..|
T Consensus 49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~---~~~~~~~y~~t~~IN~-dd-~~~~---~~~fVk~f 116 (184)
T TIGR01626 49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA---AKFPPVKYQTTTIINA-DD-AIVG---TGMFVKSS 116 (184)
T ss_pred ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH---cCCCcccccceEEEEC-cc-chhh---HHHHHHHH
Confidence 356788899999999999999998875 47787 7 32 23666 66653 21 0111 1233
Q ss_pred -HHHhcCCCeeeecCCCCCchHHHHHHHHhhCcCCceEE-EEeCCCCceecc
Q 044391 391 -EQLQAMMPWYTVQHPTIIEPAVVKYAKEVWKFSKKAIL-VPVDPQGRILNQ 440 (691)
Q Consensus 391 -~~~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~~iP~L-VvL~pqGkv~~~ 440 (691)
++....-||-.+-... .+ .+...|++.+.|.- +|+|++|+++..
T Consensus 117 ie~~~~~~P~~~vllD~----~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 117 AKKGKKENPWSQVVLDD----KG--AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred HHHhcccCCcceEEECC----cc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 4456678987665533 22 23457999999888 799999999854
No 55
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.81 E-value=0.018 Score=57.62 Aligned_cols=124 Identities=7% Similarity=0.069 Sum_probs=79.8
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChh-hhHHHH-HHHHhhccCCCCeeEEEEecccC-CCCC-ChhhHHHHHH--Hh
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDLSDE-EILVLH-LYREHKAREEFDYAIVWLPIVDR-SIAW-DEGYRQKFEQ--LQ 394 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~-s~~W-~D~d~~~F~~--~~ 394 (691)
..+|..|++++++||.|++.|-|.||+.+ +++-|+ +|++.+. .+++||=||.-+- ..+. +.++-+.|-. +-
T Consensus 12 ~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g 88 (183)
T PRK10606 12 TIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG 88 (183)
T ss_pred CCCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence 34567899999999999999999999664 677899 9999873 4699999997210 0000 2334455543 22
Q ss_pred cCCCee---eecCCCCCchHHHHHHHHhhCcCCc----------------eE----------EEEeCCCCceecccHHHH
Q 044391 395 AMMPWY---TVQHPTIIEPAVVKYAKEVWKFSKK----------------AI----------LVPVDPQGRILNQNAFHM 445 (691)
Q Consensus 395 ~~MPWy---AVp~~d~i~~~~~r~ike~f~~~~i----------------P~----------LVvL~pqGkv~~~NA~~m 445 (691)
-+.|=+ .|.-+. ..++-+||++....... |. =-++|++|+++..
T Consensus 89 ~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r----- 161 (183)
T PRK10606 89 VTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR----- 161 (183)
T ss_pred CCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE-----
Confidence 233322 121121 23589999976543211 11 4678999999865
Q ss_pred HHHhCcccccCC
Q 044391 446 LWIWGNLAFPFS 457 (691)
Q Consensus 446 I~~wG~~AFPFT 457 (691)
|+...-|-+
T Consensus 162 ---~~~~~~p~~ 170 (183)
T PRK10606 162 ---FSPDMTPED 170 (183)
T ss_pred ---ECCCCCCCH
Confidence 787888854
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.78 E-value=0.0017 Score=59.36 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=52.1
Q ss_pred C-cEEEEEEecCCCChhhh--HHH---H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 334 R-KHVLLLISSLDLSDEEI--LVL---H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 334 g-K~VlL~fSal~~~~~e~--~~L---~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
| |.|+++|++.||++|.- +.+ . +.+.++ ++|.++-|.+ |. +.....|+. .
T Consensus 13 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~-d~-----~~~~~~~~~------------~- 69 (125)
T cd02951 13 GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINI-DG-----DKEVTDFDG------------E- 69 (125)
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEc-cC-----CceeeccCC------------C-
Confidence 6 89999999999988853 222 2 444443 3577777764 21 111111211 0
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCCC-Cceecc
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDPQ-GRILNQ 440 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~~ 440 (691)
....+.+.+.|++++.|++++++++ |+++..
T Consensus 70 ---~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 70 ---ALSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred ---CccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 0124566778999999999999999 888753
No 57
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.64 E-value=0.0026 Score=58.77 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=42.5
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+||.|+|.|++.||++|.. +.+. ..+... .. -.+|.|-+ | .+.+..
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~--~~--~~fv~v~v-d-------~~~~~~------------------- 66 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE--LS--HNFVMVNL-E-------DDEEPK------------------- 66 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh--hc--CcEEEEEe-c-------CCCCch-------------------
Confidence 4899999999999998864 3333 322211 12 23455533 2 111000
Q ss_pred hHHHHHHHHhhCcCC--ceEEEEeCCCCceecc
Q 044391 410 PAVVKYAKEVWKFSK--KAILVPVDPQGRILNQ 440 (691)
Q Consensus 410 ~~~~r~ike~f~~~~--iP~LVvL~pqGkv~~~ 440 (691)
.+.|++.+ +|++++++|+|+++..
T Consensus 67 -------~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 -------DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -------hhhcccCCCccceEEEECCCCCCchh
Confidence 11356655 9999999999999764
No 58
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.63 E-value=0.0089 Score=61.02 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=65.7
Q ss_pred eeec-ceecCcEEEE-EEecCCCCh--hhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhc-----
Q 044391 326 RVNI-EVLRRKHVLL-LISSLDLSD--EEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQA----- 395 (691)
Q Consensus 326 kV~I-s~L~gK~VlL-~fSal~~~~--~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~----- 395 (691)
++.. +.++||.|.| +|=+.||+. .|+.-|. .|++++++ +.+||=||+ |+ ......|.+...
T Consensus 24 ~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---g~~VigvS~-Ds-----~~~h~aw~~~~~~~~~~ 94 (215)
T PRK13191 24 KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---NTELIGLSV-DS-----NISHIEWVMWIEKNLKV 94 (215)
T ss_pred CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---CCEEEEEEC-CC-----HHHHHHHHhhHHHhcCC
Confidence 3666 4589997666 778888855 4777799 99999854 599999995 42 334445543221
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcC-------CceEEEEeCCCCceecc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS-------KKAILVPVDPQGRILNQ 440 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~ 440 (691)
..||..+--+ . +.+.+.|++- ..|...+|||+|++...
T Consensus 95 ~i~fPllsD~-----~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 95 EVPFPIIADP-----M--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CCceEEEECC-----c--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 3444433332 2 4455567763 37999999999998864
No 59
>PRK13189 peroxiredoxin; Provisional
Probab=96.62 E-value=0.011 Score=60.60 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=63.2
Q ss_pred eeecce-ecCcEEEE-EEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH-Hhc----
Q 044391 326 RVNIEV-LRRKHVLL-LISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ-LQA---- 395 (691)
Q Consensus 326 kV~Is~-L~gK~VlL-~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~-~~~---- 395 (691)
++.+++ ++||.|.| +|=+.||+.| ++.-|. .|++.++ .+.+||-||+ |+ .....+|-+ +..
T Consensus 26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~-D~-----~~~h~aw~~~~~~~~g~ 96 (222)
T PRK13189 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSI-DQ-----VFSHIKWVEWIKEKLGV 96 (222)
T ss_pred CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEC-CC-----HHHHHHHHHhHHHhcCc
Confidence 366665 69996655 6678888555 677799 9999974 4689999996 41 223334433 222
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhCcC-------CceEEEEeCCCCceecc
Q 044391 396 MMPWYTVQHPTIIEPAVVKYAKEVWKFS-------KKAILVPVDPQGRILNQ 440 (691)
Q Consensus 396 ~MPWyAVp~~d~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~ 440 (691)
.+|+--+- |. -+.+.+.|++. ..|..++|||+|++...
T Consensus 97 ~i~fPlls-----D~--~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 97 EIEFPIIA-----DD--RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred CcceeEEE-----cC--ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 23432222 22 23455567764 46999999999998644
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.39 E-value=0.013 Score=52.25 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=46.5
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+||.|+|.|.+.||++|. .+.|. +.++. .+ ++|+-+ |. |++.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-----~~--v~~~~v-d~-----d~~~---------------------- 58 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-----ND--VVFLLV-NG-----DEND---------------------- 58 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-----CC--CEEEEE-EC-----CCCh----------------------
Confidence 489999999999998885 36677 66654 12 455544 21 2211
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
..+.+.+.|++++.|+++++ .+|+++
T Consensus 59 --~~~~l~~~~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 59 --STMELCRREKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred --HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence 12345577899999998777 789876
No 61
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.05 E-value=0.03 Score=48.42 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=46.6
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+||.|+++|.+.||++|. .+.|. +++..+ +. +.++-+ |- |..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~--~~~~~v-d~-----~~~----------------------- 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQ--FVLAKV-NC-----DAQ----------------------- 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----Cc--EEEEEE-ec-----cCC-----------------------
Confidence 478999999999999885 35677 776653 22 445544 21 111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
+.+.+.|++++.|++++++ +|+.+
T Consensus 56 ----~~l~~~~~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 56 ----PQIAQQFGVQALPTVYLFA-AGQPV 79 (96)
T ss_pred ----HHHHHHcCCCCCCEEEEEe-CCEEe
Confidence 1356679999999999997 89875
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.78 E-value=0.016 Score=51.78 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=45.6
Q ss_pred ceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 330 EVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 330 s~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
+.++||.|++.|.+.||++|. .+.|. +.++.+ ++ .++-+ | .+. .+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----~~--~~~~v-d-------~~~---------------~~-- 61 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----QI--RHLAI-E-------ESS---------------IK-- 61 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----cC--ceEEE-E-------CCC---------------CC--
Confidence 357899999999999998874 46777 777653 23 34443 3 110 11
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCCC
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDPQ 434 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~pq 434 (691)
..+.+.|++++.|+++++++.
T Consensus 62 -------~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 62 -------PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred -------HHHHHhcCCeecCEEEEEcCC
Confidence 145577999999999999754
No 63
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.74 E-value=0.042 Score=48.21 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=46.7
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
.+|.|+++|++.||+.|. .+.|. +.+++. .++.++.|-+ |++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~--------d~~~---------------------- 57 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDI--------DEDQ---------------------- 57 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEEC--------CCCH----------------------
Confidence 378999999999998875 36787 877764 2455555432 2111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
-+.+.+++.+.|+++++. +|+++
T Consensus 58 -----~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 58 -----EIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred -----HHHHHCCCeeccEEEEEE-CCeEE
Confidence 134568999999999995 78887
No 64
>PRK10996 thioredoxin 2; Provisional
Probab=95.53 E-value=0.048 Score=51.64 Aligned_cols=68 Identities=6% Similarity=0.088 Sum_probs=47.3
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.|+|+|++.||++|.- +.|. ++++.. .+ +.|+-+ |. |..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~--v~~~~v-d~-----~~~----------------------- 95 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GK--VRFVKV-NT-----EAE----------------------- 95 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CC--eEEEEE-eC-----CCC-----------------------
Confidence 4899999999999988753 5677 777653 23 555544 21 110
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
..+.+.|++++.|+++++. +|+.+..
T Consensus 96 ----~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 96 ----RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred ----HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 1356678999999999885 8987753
No 65
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.49 E-value=0.028 Score=48.47 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=38.2
Q ss_pred CcEEEEEccCChhHH---HHHHHHHHHHHHHhC--CceeeEEecccChHHHHhhhh
Q 044391 490 ERYICLYGGGDIEWI---RRFTTSAKAVARAAQ--INLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 490 gK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~--~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
||+++|||.+ .|| +++.+.+.++.+..+ ..+++++|+.|...+..++.+
T Consensus 1 gK~~ll~fwa--~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~ 54 (95)
T PF13905_consen 1 GKPVLLYFWA--SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFL 54 (95)
T ss_dssp TSEEEEEEE---TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHH
Confidence 8999999999 555 889999999877755 899999999997666665544
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.42 E-value=0.047 Score=51.34 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=53.0
Q ss_pred cCcEEEEEEec-------CCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeee
Q 044391 333 RRKHVLLLISS-------LDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTV 402 (691)
Q Consensus 333 ~gK~VlL~fSa-------l~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAV 402 (691)
+||.|.++|+| .||++|.. ++|. +.++.+ .+..++.|=+ |....|.|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdv-d~~~~w~d~----------------- 77 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDV-GDRPYWRDP----------------- 77 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEc-CCcccccCc-----------------
Confidence 47899999999 99999864 6788 777754 2366666642 221112221
Q ss_pred cCCCCCchHHHHHHHHhhCcC-CceEEEEeCCCCceeccc
Q 044391 403 QHPTIIEPAVVKYAKEVWKFS-KKAILVPVDPQGRILNQN 441 (691)
Q Consensus 403 p~~d~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~~N 441 (691)
...++..++++ ++|+++++...++++..|
T Consensus 78 ----------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 78 ----------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred ----------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence 12334568888 999999999888888766
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.27 E-value=0.071 Score=48.33 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=49.3
Q ss_pred eecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391 331 VLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI 407 (691)
Q Consensus 331 ~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~ 407 (691)
...||.|+++|.+.||++|. .+.+. +.++++. .+ +.+.-+ |. |.+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~--v~~~~v-d~-----d~~--------------------- 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LG--VGIATV-NA-----GHE--------------------- 68 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cC--ceEEEE-ec-----ccc---------------------
Confidence 34689999999999998875 36788 8888752 22 444433 21 211
Q ss_pred CchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
+.+.+.|++++.|+++++ ++|+.+..
T Consensus 69 ------~~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 69 ------RRLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 134567899999999999 58887643
No 68
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.25 E-value=0.048 Score=47.20 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=44.8
Q ss_pred EEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 336 HVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 336 ~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
.|+|+|.+.||++|. .+.+. ++++.+.. ..++.++-| | .+. .
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~v---d-------~~~----------------~-------- 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-NPSVKIAKV---D-------CTQ----------------H-------- 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-CCcEEEEEE---E-------CCC----------------C--------
Confidence 499999999998875 46788 88887641 234555444 2 110 0
Q ss_pred HHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 413 VKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
..+.+.|++++.|+++++ ++|+.+
T Consensus 63 -~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 -RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred -hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 123456899999999999 678754
No 69
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.24 E-value=0.24 Score=50.57 Aligned_cols=114 Identities=14% Similarity=0.239 Sum_probs=74.3
Q ss_pred ceecCCCCceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391 317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ 392 (691)
Q Consensus 317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~ 392 (691)
+-+....|+++....|+||.+++||.=--| ||-.+..|. +.++|.+..+.++.+|+|++ | ++.|. .+.-++
T Consensus 50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itv-D---PerDt-p~~lk~ 124 (207)
T COG1999 50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITV-D---PERDT-PEVLKK 124 (207)
T ss_pred eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEE-C---CCCCC-HHHHHH
Confidence 445556777899999999999999996666 555667788 99999854489999999996 6 44444 233344
Q ss_pred Hhc---CCCeeeecCCCCCchHHHHHHHHhhCc---------------CCceEEEEeCCCCceec
Q 044391 393 LQA---MMPWYTVQHPTIIEPAVVKYAKEVWKF---------------SKKAILVPVDPQGRILN 439 (691)
Q Consensus 393 ~~~---~MPWyAVp~~d~i~~~~~r~ike~f~~---------------~~iP~LVvL~pqGkv~~ 439 (691)
|-. .=+|--+--+ .+.++.+...|++ .+-..+.++||+|++..
T Consensus 125 Y~~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 125 YAELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred HhcccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 433 1124444432 1333333333333 33456788899998764
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.24 E-value=0.082 Score=47.04 Aligned_cols=66 Identities=3% Similarity=0.015 Sum_probs=44.8
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
.||.|+|+|.+.||++|. .+.|. ++++.+ +.. +.|+-+ |. | ..
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~---~~~--~~~~~v-d~-----d-~~---------------------- 61 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG---DDL--LHFATA-EA-----D-TI---------------------- 61 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC---CCc--EEEEEE-eC-----C-CH----------------------
Confidence 388999999999999885 36788 888764 222 344433 21 2 10
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
+ +.+.|++++.|+++++. +|+.+
T Consensus 62 -~----~~~~~~v~~~Pt~~~~~-~g~~~ 84 (102)
T cd02948 62 -D----TLKRYRGKCEPTFLFYK-NGELV 84 (102)
T ss_pred -H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence 1 23668999999998885 77655
No 71
>PTZ00051 thioredoxin; Provisional
Probab=95.23 E-value=0.058 Score=46.70 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=45.1
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+|+|.+.||++|.- +.|. +.++. . ++.++.+ | .++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-----~--~~~~~~v-d-------~~~----------------------- 59 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEY-----T--KMVFVKV-D-------VDE----------------------- 59 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHc-----C--CcEEEEE-E-------Ccc-----------------------
Confidence 789999999999988753 4566 55532 1 3666665 2 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
...+.+.|++++.|+++++ .+|+.+.
T Consensus 60 --~~~~~~~~~v~~~Pt~~~~-~~g~~~~ 85 (98)
T PTZ00051 60 --LSEVAEKENITSMPTFKVF-KNGSVVD 85 (98)
T ss_pred --hHHHHHHCCCceeeEEEEE-eCCeEEE
Confidence 1235677999999998877 6888773
No 72
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.14 E-value=0.032 Score=53.39 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=59.9
Q ss_pred cCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
+||.|+|+|.+.||++|... ++. +-+.++ ++| |.|.+.. +++|.. .+ ++
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~F--v~V~l~~---d~td~~----------~~------~~ 76 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDF--IMLNLVH---ETTDKN----------LS------PD 76 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCe--EEEEEEe---ccCCCC----------cC------cc
Confidence 38999999999999998542 222 344443 346 5555421 223311 00 01
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhh
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKA 467 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~ 467 (691)
+ .+.|+++++||+|+++.+ +.--++...|-+.+++.+.|.+-
T Consensus 77 --------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~ 118 (130)
T cd02960 77 --------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN 118 (130)
T ss_pred --------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence 1 368999999999998864 35678888898889988887654
No 73
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.19 Score=49.63 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred ceecCCCCceeecceecCcEEEEEEecCCC-Chh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHH
Q 044391 317 PVVDGSSRTRVNIEVLRRKHVLLLISSLDL-SDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQ 392 (691)
Q Consensus 317 ~l~~g~~~~kV~Is~L~gK~VlL~fSal~~-~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~ 392 (691)
+-+-+.++..|.+++++||.|.|||=-.+. |.| |..-+. .|+++++ -+.+|+=||. | +-...++|.+
T Consensus 13 F~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~-D-----s~~~~~~F~~ 83 (157)
T COG1225 13 FELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISP-D-----SPKSHKKFAE 83 (157)
T ss_pred eEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeC-C-----CHHHHHHHHH
Confidence 444556677799999999999999987774 334 445577 8888763 4799999995 5 3667788976
Q ss_pred HhcCCCeeeecCCCCCchHHHHHHHHhhCcC------------CceEEEEeCCCCceec
Q 044391 393 LQAMMPWYTVQHPTIIEPAVVKYAKEVWKFS------------KKAILVPVDPQGRILN 439 (691)
Q Consensus 393 ~~~~MPWyAVp~~d~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~ 439 (691)
-+ . ++|+=+.|... .+.+.|++- -+++-.|||+||++..
T Consensus 84 k~-~-----L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 84 KH-G-----LTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred Hh-C-----CCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 43 2 22321112221 244556652 3578899999999975
No 74
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.59 E-value=0.099 Score=46.32 Aligned_cols=65 Identities=8% Similarity=-0.099 Sum_probs=45.6
Q ss_pred ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
.+++.|+++|.+.||++|. .+.|. ++++++.+ + ..+.+..+ | .+. +
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-~--~~~~~~~v-d-------~~~----------------~---- 61 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-G--SPVRVGKL-D-------ATA----------------Y---- 61 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-C--CcEEEEEE-E-------Ccc----------------C----
Confidence 3468999999999998875 47788 88887632 2 34556554 2 111 1
Q ss_pred chHHHHHHHHhhCcCCceEEEEeC
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVD 432 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~ 432 (691)
..+.+.|++++.|+++++.
T Consensus 62 -----~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 -----SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred -----HhHHhhcCCccccEEEEEc
Confidence 1345679999999999994
No 75
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.52 E-value=0.13 Score=45.17 Aligned_cols=66 Identities=8% Similarity=-0.123 Sum_probs=46.2
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
||.|+|+|.+.||++|.- +.+. +.++++ ..+.++.|-+ |.++
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~--------~~~~----------------------- 62 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDC--------DEDK----------------------- 62 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEec--------Cccc-----------------------
Confidence 778999999999988753 5666 666654 3466666643 2110
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGR 436 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGk 436 (691)
.+.+.+.|++++.|+++++++.|+
T Consensus 63 --~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 --NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred --cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123456789999999999998874
No 76
>PHA02278 thioredoxin-like protein
Probab=94.50 E-value=0.11 Score=47.39 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=44.7
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+++.|+++|.|.||+||.. +.+. +-++. ..+.+++.|=+ |.+ .++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~----~~~~~~~~vdv--------d~~--~~d------------------ 60 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG----DIKKPILTLNL--------DAE--DVD------------------ 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh----cCCceEEEEEC--------Ccc--ccc------------------
Confidence 5889999999999999864 4555 43331 22345566543 211 110
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
...+.+.|+++++|+++++. +|+.+
T Consensus 61 ---~~~l~~~~~I~~iPT~i~fk-~G~~v 85 (103)
T PHA02278 61 ---REKAVKLFDIMSTPVLIGYK-DGQLV 85 (103)
T ss_pred ---cHHHHHHCCCccccEEEEEE-CCEEE
Confidence 11255679999999999996 46555
No 77
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.46 E-value=0.076 Score=61.68 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=48.0
Q ss_pred cCcEEEEEEecCCCChhhhH---HH--H-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDLSDEEIL---VL--H-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~---~L--~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
+||.|++.|.+.||++|... ++ . +.++++ ++ +++-+ | |++.+.
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~--~~v~v-D----vt~~~~------------------- 521 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DT--VLLQA-D----VTANNA------------------- 521 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CC--EEEEE-E----CCCCCh-------------------
Confidence 48999999999999888542 12 2 444442 34 55544 3 444321
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
..+.+.++|++.+.|+++++|++|+.++
T Consensus 522 -----~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 -----EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred -----hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234566799999999999999999864
No 78
>PRK09381 trxA thioredoxin; Provisional
Probab=94.45 E-value=0.15 Score=45.24 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|. .+.|. +.++.. .++.+.-|-+ |...
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~--------~~~~----------------------- 65 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNI--------DQNP----------------------- 65 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEEC--------CCCh-----------------------
Confidence 78999999999998875 36788 887764 2354444422 2111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
.+.+.|++++.|+++++ ++|+++.
T Consensus 66 ----~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 66 ----GTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred ----hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 13456899999999999 6898764
No 79
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.35 E-value=0.18 Score=45.38 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=45.8
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+||.|++.|.+.||++|.- +.+. +.++++ +.++.+.-|-+ |.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~---~~~~~~~~vd~--------d~~~---------------------- 66 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA---GSNVKVAKFNA--------DGEQ---------------------- 66 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc---cCCeEEEEEEC--------Cccc----------------------
Confidence 3799999999999988753 5677 777765 23455555432 2100
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGR 436 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGk 436 (691)
..+.++.|++++.|+++++++.|+
T Consensus 67 ---~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 67 ---REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred ---hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 112234589999999999988765
No 80
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.35 E-value=0.14 Score=45.64 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
++.|+++|.+.||++|. .+.+. +++++++...+.-.++|..+ | .++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~v-d-------~d~----------------------- 66 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKV-D-------CDK----------------------- 66 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEE-E-------CCC-----------------------
Confidence 67899999999998874 36787 88887643112123666654 2 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
-+.+.+.|++++.|+++++ ++|+.
T Consensus 67 --~~~l~~~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 67 --ESDIADRYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred --CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence 1235667899999999998 67874
No 81
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.34 E-value=0.15 Score=43.93 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=45.4
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|.- +.|. +.+++ ...+.|+-+ | .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~------~~~i~~~~v-d-------~~~----------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA------FPSVLFLSI-E-------AEE----------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh------CCceEEEEE-c-------ccc-----------------------
Confidence 789999999999988752 4565 55554 125666654 2 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
...+.+.|++.+.|+++++. +|+.+.
T Consensus 57 --~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 82 (97)
T cd02984 57 --LPEISEKFEITAVPTFVFFR-NGTIVD 82 (97)
T ss_pred --CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence 12355668999999999995 888763
No 82
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.31 E-value=0.19 Score=44.11 Aligned_cols=65 Identities=11% Similarity=-0.086 Sum_probs=42.7
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.|+++|.+.||++|.- +.+. +-++++ ++ +.+.-+ |- |+.
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~--~~~~~v-d~-----~~~----------------------- 61 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GV--IRIGAV-NC-----GDD----------------------- 61 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----Cc--eEEEEE-eC-----Ccc-----------------------
Confidence 4689999999999988752 4555 555543 33 444433 21 111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
+.+.+.+++++.|+++++ ++|+.
T Consensus 62 ----~~~~~~~~v~~~Pt~~~~-~~g~~ 84 (101)
T cd03003 62 ----RMLCRSQGVNSYPSLYVF-PSGMN 84 (101)
T ss_pred ----HHHHHHcCCCccCEEEEE-cCCCC
Confidence 124566899999999999 78874
No 83
>PTZ00062 glutaredoxin; Provisional
Probab=94.27 E-value=0.53 Score=48.26 Aligned_cols=133 Identities=12% Similarity=0.179 Sum_probs=76.7
Q ss_pred cEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHH
Q 044391 335 KHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVV 413 (691)
Q Consensus 335 K~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~ 413 (691)
+.+.|||++.||++|.. +. +.++|.+. - -+|.|+.+ |++
T Consensus 18 g~~vl~f~a~w~~~C~~--m~~vl~~l~~~-~--~~~~F~~V--------~~d--------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQ--LMDVCNALVED-F--PSLEFYVV--------NLA--------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHH--HHHHHHHHHHH-C--CCcEEEEE--------ccc---------------------------
Confidence 45799999999999863 34 55555432 1 24777776 322
Q ss_pred HHHHHhhCcCCceEEEEeCCCCceec----ccHHHHHH---HhCcccccCChhhHHHHHhhhccchhhhcccCchhhhhh
Q 044391 414 KYAKEVWKFSKKAILVPVDPQGRILN----QNAFHMLW---IWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEW 486 (691)
Q Consensus 414 r~ike~f~~~~iP~LVvL~pqGkv~~----~NA~~mI~---~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~ 486 (691)
|++.++|++|++. +|+.+. .|+..+.. .|-.. .. . + .+...+.++
T Consensus 58 ------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~-----------~----~~~~~v~~l 109 (204)
T PTZ00062 58 ------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-S-----------E----DTVEKIERL 109 (204)
T ss_pred ------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-H-----------H----HHHHHHHHH
Confidence 7999999999995 555554 45544321 12110 00 0 0 022234455
Q ss_pred hcCCcEEEEE--ccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHhhhh
Q 044391 487 MKEERYICLY--GGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 487 i~egK~I~LY--gG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
|+..+ |.|| |.....|| .|..++..+=+..+++++.+-|.+| +.+|.-+
T Consensus 110 i~~~~-Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l 160 (204)
T PTZ00062 110 IRNHK-ILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED---PDLREEL 160 (204)
T ss_pred HhcCC-EEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHH
Confidence 55544 4444 43444678 4555555554555999998888765 3444443
No 84
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=93.94 E-value=0.16 Score=47.68 Aligned_cols=70 Identities=7% Similarity=-0.037 Sum_probs=45.2
Q ss_pred cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391 333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA 411 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~ 411 (691)
.+|.|++.|+|.||+||. .+. +++++.++..+. +.|+-+ |. |+
T Consensus 13 ~~~~vVV~F~A~WCgpCk--~m~P~le~la~~~~~~--v~f~kV-Dv-----D~-------------------------- 56 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCM--QMDEVLAKIAEDVSNF--AVIYLV-DI-----DE-------------------------- 56 (114)
T ss_pred CCCEEEEEEECCCChhHH--HHHHHHHHHHHHccCc--eEEEEE-EC-----CC--------------------------
Confidence 367899999999999986 334 555554332222 334432 31 21
Q ss_pred HHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 412 VVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 412 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
..-+.+.|+++++|+++++- +|+.+..
T Consensus 57 -~~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 57 -VPDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred -CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 11345668999999999997 6877754
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=93.91 E-value=0.27 Score=41.88 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=44.6
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|.- +.|. +.+++. .+..++.|=. |.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~--------~~~------------------------ 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNV--------DEN------------------------ 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEEC--------CCC------------------------
Confidence 679999999999988753 5566 555543 3466666632 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
+.+.+.|++++.|+++++ ++|+++
T Consensus 58 ---~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 ---PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred ---HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 123456899999999999 678754
No 86
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.89 E-value=0.29 Score=42.00 Aligned_cols=68 Identities=13% Similarity=-0.026 Sum_probs=48.2
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.+.++|.+.||++|. .+.+. +.+..+.. .++.++.+.+ |++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--~~~~~~~~d~--------~~~----------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--PDIVLAKVDA--------TAE----------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--CceEEEEEEc--------cch-----------------------
Confidence 689999999999998874 36677 77776532 2455555432 211
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
..+.+.|++++.|++++++++|.+
T Consensus 59 ----~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 59 ----KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred ----HHHHHhCCCCcCCEEEEecCCCcc
Confidence 234566899999999999988863
No 87
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.59 E-value=0.2 Score=45.39 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=44.6
Q ss_pred cCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
++|.+++||.+.||++|... +|. +-+.+++ +| |++.+ | .++.+
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----~~--v~~~~-d----~~~~e-------------------- 64 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----NF--IFWQC-D----IDSSE-------------------- 64 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----CE--EEEEe-c----CCCcc--------------------
Confidence 48999999999999887553 233 3333432 22 33322 2 11111
Q ss_pred CCchHHHHHHHHhhCcCCceEEEEeCC-CCceecc
Q 044391 407 IIEPAVVKYAKEVWKFSKKAILVPVDP-QGRILNQ 440 (691)
Q Consensus 407 ~i~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~~~ 440 (691)
+ +.+.+.+++++.|+++++|| +|+++..
T Consensus 65 -----~-~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 65 -----G-QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred -----H-HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 1 12355578999999999999 7988753
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=93.53 E-value=1.8 Score=43.83 Aligned_cols=153 Identities=9% Similarity=0.022 Sum_probs=77.8
Q ss_pred CcEEEEEEe--cCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLIS--SLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fS--al~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
|+.|.+|++ +.||++|.. +. +++++.+. .++.+|.++-+ |.++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~--~~p~l~~la~~-~~~~~i~~v~v--------d~~~----------------------- 65 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKE--TEQLLEELSEV-SPKLKLEIYDF--------DTPE----------------------- 65 (215)
T ss_pred CeEEEEEcCCCCCCCCchHH--HHHHHHHHHhh-CCCceEEEEec--------CCcc-----------------------
Confidence 667777666 589999864 34 55565433 23577888865 2211
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec--ccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCchhhhhh--
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN--QNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEW-- 486 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~--~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~-- 486 (691)
-+.+.+.|++++.|++++++. |+.+. ..+.. +.+. | .+.++++-. ..-....+++...+.
T Consensus 66 --~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~-----~~~~--l-~~~i~~~~~-----~~~~~~~L~~~~~~~l~ 129 (215)
T TIGR02187 66 --DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIP-----AGYE--F-AALIEDIVR-----VSQGEPGLSEKTVELLQ 129 (215)
T ss_pred --cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecC-----CHHH--H-HHHHHHHHH-----hcCCCCCCCHHHHHHHH
Confidence 113455689999999999974 54432 11110 0000 0 000111100 000001133322111
Q ss_pred -hcCCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHHh
Q 044391 487 -MKEERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERFR 537 (691)
Q Consensus 487 -i~egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~ 537 (691)
.+.+..|-+|....=.+|+..-+.+.+++.. ...+.++.|..+...+.++
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~~ 180 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLAE 180 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHHH
Confidence 3345566666554335567777788888766 4456666666665444443
No 89
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=93.41 E-value=0.13 Score=49.96 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=40.6
Q ss_pred hhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh--------CCceeeEEecccChHHHHhhh
Q 044391 484 LEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA--------QINLGMAYVGKNNAKERFRKI 539 (691)
Q Consensus 484 ~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a--------~~~~E~v~Vgkdn~~e~v~~~ 539 (691)
+++ .||.+.|||++ .|| ++|++.+.++.++. +..||+++|+.|...+.+++.
T Consensus 21 s~~--kgk~vlL~FwA--sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f 83 (146)
T cd03008 21 ARL--ENRVLLLFFGA--VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESF 83 (146)
T ss_pred HHh--CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHH
Confidence 355 89999999999 786 99999998875531 236999999998665555554
No 90
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.38 E-value=0.32 Score=42.45 Aligned_cols=66 Identities=3% Similarity=-0.074 Sum_probs=41.8
Q ss_pred ecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
++|+ ++|+|.+.||++|. .+.+. +.+..+ +.++.+.-|.. |++.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~---~~~v~~~~vd~--------~~~~--------------------- 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD---DLGINVAKVDV--------TQEP--------------------- 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc---cCCeEEEEEEc--------cCCH---------------------
Confidence 4566 67999999998874 35666 655432 22344443321 1111
Q ss_pred chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
.+.+.|++++.|+++++ ++|++
T Consensus 62 ------~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 ------GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred ------hHHHHcCCcccCEEEEe-CCCCE
Confidence 14566899999999886 88874
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=92.71 E-value=0.28 Score=42.27 Aligned_cols=67 Identities=16% Similarity=0.031 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|. .+.+. +.++++. ..+ +.++.+ | .+++ +
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~--~~~~~i-d-------~~~~---------------~------ 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDD--VVIAKV-D-------ADEA---------------N------ 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCC--EEEEEE-E-------CCCc---------------c------
Confidence 67899999999998874 36677 7777652 123 555554 2 1110 1
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGR 436 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGk 436 (691)
..+.+.|++++.|+++++++.|+
T Consensus 65 ---~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ---KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ---hhhHHhCCCCCcCEEEEEeCCCC
Confidence 13455689999999999998764
No 92
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.45 E-value=0.53 Score=41.33 Aligned_cols=65 Identities=6% Similarity=-0.158 Sum_probs=41.5
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|.- +.+. +-++. +....+.-| | .+ .
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~----~~~~~~~~v---d-------~~-------------------~---- 61 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARAL----KGKVKVGSV---D-------CQ-------------------K---- 61 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHh----cCCcEEEEE---E-------CC-------------------c----
Confidence 679999999999988753 4444 44443 223333333 2 11 0
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
.+.+.+.+++++.|+++++.+.|+.
T Consensus 62 --~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 --YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred --hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1235566899999999999876454
No 93
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.38 E-value=0.66 Score=38.93 Aligned_cols=65 Identities=9% Similarity=-0.061 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
++.++++|.+.||++|.- +.+. +.+.++. +.++.++=|.. + +
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~v~~--------~--~----------------------- 59 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG--DGKVVVAKVDC--------T--A----------------------- 59 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc--CCceEEEEeec--------c--c-----------------------
Confidence 558999999999988743 5677 7777641 23344433321 1 1
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCC
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQG 435 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqG 435 (691)
-..+.+.+++++.|++++++++|
T Consensus 60 --~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 --NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred --hHHHHHhCCCCCCCEEEEEcCCC
Confidence 12445668999999999999886
No 94
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.98 E-value=0.62 Score=42.66 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=39.6
Q ss_pred CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA 411 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~ 411 (691)
++.|.++|++.||++|.. ++|. ++... .+..+++.|=+ |+.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~---~la~~-~~~i~~~~vd~--------d~~------------------------- 64 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLE---ELSEL-SDKLKLEIYDF--------DED------------------------- 64 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHH---HHHHh-cCceEEEEEeC--------CcC-------------------------
Confidence 566899999999999853 4455 33222 12355555422 210
Q ss_pred HHHHHHHhhCcCCceEEEEeCCC
Q 044391 412 VVKYAKEVWKFSKKAILVPVDPQ 434 (691)
Q Consensus 412 ~~r~ike~f~~~~iP~LVvL~pq 434 (691)
+.+.+.|++++.|++++++..
T Consensus 65 --~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 --KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred --HHHHHHcCCCcCCEEEEEeCC
Confidence 125566899999999999753
No 95
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=91.89 E-value=1.2 Score=40.35 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
++.|+++|.+.||++|.. +. +++++-++. .+ +.|+-+ | .++ .
T Consensus 24 ~~~vvv~F~a~~c~~C~~--l~~~l~~la~~~-~~--v~f~~v-d-------~~~-----------------------~- 66 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKI--LDSHLEELAAKY-PE--TKFVKI-N-------AEK-----------------------A- 66 (113)
T ss_pred CCEEEEEEeCCCCCcHHH--HHHHHHHHHHHC-CC--cEEEEE-E-------chh-----------------------h-
Confidence 589999999999998863 33 444443321 12 445543 2 111 1
Q ss_pred HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHH
Q 044391 413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAA 463 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~ 463 (691)
.|.+.|++++.|+++++. +|+.+.. -.+.....| ..|+...++.
T Consensus 67 --~l~~~~~i~~~Pt~~~f~-~G~~v~~-~~G~~~~~~---~~~~~~~l~~ 110 (113)
T cd02957 67 --FLVNYLDIKVLPTLLVYK-NGELIDN-IVGFEELGG---DDFTTEDLEK 110 (113)
T ss_pred --HHHHhcCCCcCCEEEEEE-CCEEEEE-EecHHHhCC---CCCCHHHHHH
Confidence 455678999999998885 6777642 223344455 6777666654
No 96
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=91.51 E-value=0.72 Score=37.71 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=40.7
Q ss_pred cEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchH
Q 044391 335 KHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPA 411 (691)
Q Consensus 335 K~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~ 411 (691)
|.++|+|.+.||+.|.- ..|. +.++ ..++.++.|.. +.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-----~~~~~~~~i~~--------~~-------------------------- 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-----YPKVKFVKVDV--------DE-------------------------- 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-----CCCceEEEEEC--------CC--------------------------
Confidence 88999999999988742 3444 4433 34577777653 11
Q ss_pred HHHHHHHhhCcCCceEEEEeCCCCc
Q 044391 412 VVKYAKEVWKFSKKAILVPVDPQGR 436 (691)
Q Consensus 412 ~~r~ike~f~~~~iP~LVvL~pqGk 436 (691)
.+.+.+.|++.+.|+++++. +|+
T Consensus 52 -~~~~~~~~~v~~~P~~~~~~-~g~ 74 (93)
T cd02947 52 -NPELAEEYGVRSIPTFLFFK-NGK 74 (93)
T ss_pred -ChhHHHhcCcccccEEEEEE-CCE
Confidence 11234458999999999995 555
No 97
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.28 E-value=0.34 Score=41.54 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=42.8
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|.. +.|. +-++.+ .++.++-|-+ ++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~--------~~------------------------- 59 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDC--------DE------------------------- 59 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEET--------TT-------------------------
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhh--------hc-------------------------
Confidence 689999999999988854 4455 544433 2444444422 11
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
-+.+.+.|++++.|+++++...+.+
T Consensus 60 --~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 60 --NKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp --SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred --cchhhhccCCCCCCEEEEEECCcEE
Confidence 1335567899999999999654444
No 98
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.26 E-value=0.52 Score=40.79 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=44.8
Q ss_pred cCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+++.++++|.+.||++|. .+.+. +.++++.. . .++++-+ |- ++ + .+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~--~~~~~~i-d~----~~-~----------------~~----- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--G--KGVLAAV-DC----TK-P----------------EH----- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--C--ceEEEEE-EC----CC-C----------------cc-----
Confidence 367899999999998875 46777 87777532 2 3445433 21 11 0 00
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
..+.+.+++++.|++++. ++|+.+
T Consensus 65 ----~~~~~~~~i~~~Pt~~~~-~~g~~~ 88 (104)
T cd02997 65 ----DALKEEYNVKGFPTFKYF-ENGKFV 88 (104)
T ss_pred ----HHHHHhCCCccccEEEEE-eCCCee
Confidence 124456899999998776 478754
No 99
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.51 E-value=0.89 Score=42.48 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=26.8
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEec
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPI 375 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpi 375 (691)
|+.+.+||++.|||+|.. ++|. +=++ .+.+|.+|-+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~------~~~~~y~vdv 61 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ------TKAPIYYIDS 61 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh------cCCcEEEEEC
Confidence 788999999999999864 6676 4333 3366888864
No 100
>PTZ00102 disulphide isomerase; Provisional
Probab=90.44 E-value=0.58 Score=51.92 Aligned_cols=68 Identities=18% Similarity=0.048 Sum_probs=44.9
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
.||.|+|+|.+.||++|.- +.+. +-++.+. ...+-+++|-. |...
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~--------~~~~---------------------- 421 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNG--------TANE---------------------- 421 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEEC--------CCCc----------------------
Confidence 4899999999999988753 5555 5544432 23455555532 1111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
.+.+.|++++.|+++++++.|++
T Consensus 422 -----~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 -----TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred -----cchhcCCCcccCeEEEEECCCcc
Confidence 01345789999999999987775
No 101
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=89.80 E-value=1.4 Score=38.20 Aligned_cols=62 Identities=5% Similarity=-0.183 Sum_probs=41.1
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
++.|+|+|.+.||++|. .+.+. +.++.+ ..+.+.-+ | .+.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~i---d-------~~~----------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAV---D-------ADV----------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEE---E-------Ccc-----------------------
Confidence 56699999999998774 35676 666654 23444443 2 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCC
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQ 434 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pq 434 (691)
...+.+.|++++.|+++++++.
T Consensus 61 --~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 --HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred --hHHHHHHCCCCccCEEEEECCC
Confidence 1234567899999999999755
No 102
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.77 E-value=1.8 Score=39.54 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+|.|+++|.+.||++|.. +.+. +.++++.. .+ .|-+..||- +.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-~~---~v~~~~vd~-----~~~~----------------------- 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-RP---VVRVAAVDC-----ADEE----------------------- 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-CC---ceEEEEEec-----cchh-----------------------
Confidence 579999999999988753 5677 77776532 11 233333331 1110
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceecccHH
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILNQNAF 443 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~ 443 (691)
...+.+.|++++.|+++++.+.+ ....++.
T Consensus 67 --~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 67 --NVALCRDFGVTGYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred --hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence 12345568999999999996544 5555443
No 103
>smart00594 UAS UAS domain.
Probab=89.76 E-value=1.1 Score=41.39 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=43.3
Q ss_pred ecCcEEEEEEecCCCChhhhH---HHH---HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391 332 LRRKHVLLLISSLDLSDEEIL---VLH---LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP 405 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~e~~---~L~---iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~ 405 (691)
=+||.+++||.+.||++|... +|. +-+-+++ + .|.+.. | +++.+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----~--fv~~~~-d----v~~~e------------------- 74 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----N--FIFWQV-D----VDTSE------------------- 74 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----C--EEEEEe-c----CCChh-------------------
Confidence 358999999999999876542 232 3344432 2 444433 2 22211
Q ss_pred CCCchHHHHHHHHhhCcCCceEEEEeCCCC
Q 044391 406 TIIEPAVVKYAKEVWKFSKKAILVPVDPQG 435 (691)
Q Consensus 406 d~i~~~~~r~ike~f~~~~iP~LVvL~pqG 435 (691)
+ ..+.+.+++.+-|.+++++|+|
T Consensus 75 ------g-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 ------G-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred ------H-HHHHHhcCcCCCCEEEEEecCC
Confidence 1 3456668999999999999997
No 104
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=89.26 E-value=0.96 Score=41.47 Aligned_cols=65 Identities=11% Similarity=0.243 Sum_probs=42.6
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
++.|.++|.+.||++|.. +.|. +-++. .+ +.|+-| | .++
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-----~~--i~f~~V-d-------~~~----------------------- 63 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH-----LE--TKFIKV-N-------AEK----------------------- 63 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHc-----CC--CEEEEE-E-------ccc-----------------------
Confidence 478999999999999863 4454 43322 12 344443 2 111
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
...|.+.|++++.|+++++. +|+.+.
T Consensus 64 --~~~l~~~~~v~~vPt~l~fk-~G~~v~ 89 (113)
T cd02989 64 --APFLVEKLNIKVLPTVILFK-NGKTVD 89 (113)
T ss_pred --CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence 12356779999999999997 777663
No 105
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=88.39 E-value=2.1 Score=37.24 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=41.2
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
||.++++|.+.||++++. +.|. +=++.+ +++.++||-. ++ |.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~----------~~--~~------------------- 56 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDA----------DD--FG------------------- 56 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEch----------Hh--hH-------------------
Confidence 889999999999976532 3444 444443 4578888742 22 11
Q ss_pred HHHHHHHHhhCcC--CceEEEEeCC
Q 044391 411 AVVKYAKEVWKFS--KKAILVPVDP 433 (691)
Q Consensus 411 ~~~r~ike~f~~~--~iP~LVvL~p 433 (691)
.+.+.|+++ +.|++++++.
T Consensus 57 ----~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 57 ----RHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred ----HHHHHcCCChhhCCEEEEEec
Confidence 134457888 9999999987
No 106
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=87.95 E-value=1.2 Score=41.31 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=41.1
Q ss_pred hcccC-chhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh-C--CceeeEEecccChHHHHhh
Q 044391 475 LIDDI-DATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA-Q--INLGMAYVGKNNAKERFRK 538 (691)
Q Consensus 475 Lvd~i-d~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~--~~~E~v~Vgkdn~~e~v~~ 538 (691)
|+|+- ...+.++ .||.+.|||.+ .|| ++..+.+.+++++. + ..+++++|+-|...+.+++
T Consensus 3 ~~~~~~~v~l~~~--~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~ 69 (132)
T cd02964 3 LLDGEGVVPVSAL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNE 69 (132)
T ss_pred cccCCccccHHHh--CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHH
Confidence 45544 2234556 89999999998 787 77777777776542 2 4799999998754444433
No 107
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=87.64 E-value=4.8 Score=38.95 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=61.0
Q ss_pred Cceeecce-ecCcEEEEEEecC-CCChh--h-hHHHH-HHHHhhccCCCCe-eEEEEecccCCCCCChhhHHHHHHHhcC
Q 044391 324 RTRVNIEV-LRRKHVLLLISSL-DLSDE--E-ILVLH-LYREHKAREEFDY-AIVWLPIVDRSIAWDEGYRQKFEQLQAM 396 (691)
Q Consensus 324 ~~kV~Is~-L~gK~VlL~fSal-~~~~~--e-~~~L~-iY~~lk~~~~~~f-EIVwIpiVd~s~~W~D~d~~~F~~~~~~ 396 (691)
+..|.+++ ++||.|.|||--. |+|.| + +.-+. .|++++++ +. +|+=||. | +-...++|.+-..-
T Consensus 18 g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---g~~~V~~iS~-D-----~~~~~~~~~~~~~~ 88 (155)
T cd03013 18 PNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---GVDEVICVSV-N-----DPFVMKAWGKALGA 88 (155)
T ss_pred CceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---CCCEEEEEEC-C-----CHHHHHHHHHhhCC
Confidence 56799999 5887666666554 55444 6 77788 99999743 57 5888885 4 24456667665443
Q ss_pred -CCeeeecCCCCCchHHHHHHHHhhCcC------C-----ceEEEEeCCCCceecc
Q 044391 397 -MPWYTVQHPTIIEPAVVKYAKEVWKFS------K-----KAILVPVDPQGRILNQ 440 (691)
Q Consensus 397 -MPWyAVp~~d~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~ 440 (691)
.|..-+--++ +.+.+.|++- + ....+|+| +|++...
T Consensus 89 ~~~f~lLsD~~-------~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 89 KDKIRFLADGN-------GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred CCcEEEEECCC-------HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 1222222121 2334445541 1 46778889 6998754
No 108
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=87.52 E-value=0.79 Score=42.85 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=37.1
Q ss_pred hhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 484 LEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 484 ~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
.+-++.|+++.+|||+.+ .|||.|.|.+.+++++ ....++||-.|
T Consensus 17 ~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd 62 (122)
T TIGR01295 17 LEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSE 62 (122)
T ss_pred HHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECC
Confidence 345779999999999966 6679999999999776 45678898877
No 109
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=3.1 Score=42.64 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=70.2
Q ss_pred ceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCee
Q 044391 325 TRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWY 400 (691)
Q Consensus 325 ~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWy 400 (691)
.+|..++..||.+.|||=-.|. ||-|+.-+. .|++.+++ +-||+-||+ |+ .....+..+--..-.=.
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---g~eVigvS~-Ds-----~fsH~aW~~~~~~~~gi 94 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---GVEVIGVST-DS-----VFSHKAWKATIREAGGI 94 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---CCEEEEEec-Cc-----HHHHHHHHhcHHhcCCc
Confidence 4799999999999999999994 777888899 99999854 699999996 42 22233333321111111
Q ss_pred e-ecCCCCCchHHHHHHHHhhCcCC------ceEEEEeCCCCceec
Q 044391 401 T-VQHPTIIEPAVVKYAKEVWKFSK------KAILVPVDPQGRILN 439 (691)
Q Consensus 401 A-Vp~~d~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~ 439 (691)
. |+||=.- ...+.|.+.|++-. .=.+.|+||+|++-.
T Consensus 95 ~~i~~Pmia--D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~ 138 (194)
T COG0450 95 GKIKFPMIA--DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH 138 (194)
T ss_pred cceecceEE--cCchhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence 1 5565321 23556777788854 235789999998743
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=86.69 E-value=2.9 Score=34.79 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=22.7
Q ss_pred EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEec
Q 044391 338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPI 375 (691)
Q Consensus 338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpi 375 (691)
..+|++.||++|.- +.|. +.++.+ .+++++.|-+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~ 39 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINV 39 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeC
Confidence 45678899988753 5677 766653 3477777753
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=86.41 E-value=2.2 Score=42.39 Aligned_cols=88 Identities=14% Similarity=0.053 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
++.|.++|.+.||++|.. +. ++++|-.+. . ++.|+-| |.++ .
T Consensus 83 ~~~VVV~Fya~wc~~Ck~--m~~~l~~LA~~~-~--~vkF~kV--------d~d~-----------------------~- 125 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAA--LNSSLLCLAAEY-P--AVKFCKI--------RASA-----------------------T- 125 (175)
T ss_pred CcEEEEEEECCCCchHHH--HHHHHHHHHHHC-C--CeEEEEE--------eccc-----------------------h-
Confidence 459999999999999863 33 444443221 1 4777766 2221 0
Q ss_pred HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHH
Q 044391 413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALW 465 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~ 465 (691)
.+.+.|+++.+|+++++- +|+.+..= .. ....|.. -|+.+++|..-
T Consensus 126 --~l~~~f~v~~vPTlllyk-~G~~v~~~-vG-~~~~~g~--~f~~~~le~~L 171 (175)
T cd02987 126 --GASDEFDTDALPALLVYK-GGELIGNF-VR-VTEDLGE--DFDAEDLESFL 171 (175)
T ss_pred --hhHHhCCCCCCCEEEEEE-CCEEEEEE-ec-hHHhcCC--CCCHHHHHHHH
Confidence 345568999999999986 58777422 11 1234444 67777776543
No 112
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=86.17 E-value=1.9 Score=42.12 Aligned_cols=37 Identities=11% Similarity=-0.103 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEE
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWL 373 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwI 373 (691)
++.|+++|.+.||++|.- +.+. +.++.. +.++.++-|
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~---~~~v~f~~V 86 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYN---NNNLKFGKI 86 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcc---cCCeEEEEE
Confidence 679999999999998853 4555 554432 234555555
No 113
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.06 E-value=2 Score=44.61 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
++.++++|.+.||++|. .+.+. +.++++ +. |.+.-+ | .++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~--v~~~~V-D-------~~~~---------------------- 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQ--VNVADL-D-------ATRA---------------------- 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CC--eEEEEe-c-------Cccc----------------------
Confidence 57899999999999875 35666 766654 22 333322 3 1110
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
..+.+.|++++.|++++++ +|+.+
T Consensus 96 ---~~l~~~~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 96 ---LNLAKRFAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred ---HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence 1356678999999999998 78765
No 114
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=86.02 E-value=3.3 Score=36.74 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=43.7
Q ss_pred cceecCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCC
Q 044391 329 IEVLRRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTI 407 (691)
Q Consensus 329 Is~L~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~ 407 (691)
++.|+++.-..+|.+.||+.|.. +. +.+++.+. ..++++..|-+ |+ +.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~--~~~~~~~l~~~-~~~i~~~~vd~--------~~----~~---------------- 55 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPD--VVQALNLMAVL-NPNIEHEMIDG--------AL----FQ---------------- 55 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHH--HHHHHHHHHHH-CCCceEEEEEh--------Hh----CH----------------
Confidence 34688888888999999988763 23 44555432 22344444422 21 11
Q ss_pred CchHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 408 IEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 408 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
.+.+++++.+.|++|+ +|+++..
T Consensus 56 -------e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 -------DEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred -------HHHHHcCCccCCEEEE---CCEEEEe
Confidence 1233579999999986 6877763
No 115
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=85.82 E-value=2 Score=39.84 Aligned_cols=67 Identities=6% Similarity=-0.052 Sum_probs=42.2
Q ss_pred ecCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
-.+|.|++.|.+.||++|.. +.+. +-++++ +. +.++-+ |- |++
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~--v~~~~V-d~-----d~~---------------------- 72 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQ--VLFVAI-NC-----WWP---------------------- 72 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CC--eEEEEE-EC-----CCC----------------------
Confidence 35799999999999988854 4454 444443 22 555554 31 111
Q ss_pred chHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
. ...++.+++++.|++.++ .+|+.
T Consensus 73 -~---~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 73 -Q---GKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred -h---HHHHHhcCCcccCEEEEE-ECCcc
Confidence 1 112345799999999999 56653
No 116
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=2.7 Score=38.78 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
+|-|.+.|+|.||+||.. +. .|++|-.+ -.+ ++|+=+ | -|+
T Consensus 21 ~kliVvdF~a~wCgPCk~--i~P~~~~La~~-y~~--v~Flkv-d-------vde------------------------- 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKA--IAPKFEKLAEK-YPD--VVFLKV-D-------VDE------------------------- 62 (106)
T ss_pred CCeEEEEEECCCCcchhh--hhhHHHHHHHH-CCC--CEEEEE-e-------ccc-------------------------
Confidence 799999999999999854 45 67777654 334 566543 2 111
Q ss_pred HHHHHHhhCcCCceEEEEeCC---CCceecccHH
Q 044391 413 VKYAKEVWKFSKKAILVPVDP---QGRILNQNAF 443 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~p---qGkv~~~NA~ 443 (691)
.+-+.+.|+++..|+++.+-. .++++..|..
T Consensus 63 ~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 63 LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 234456689999999999932 2455555544
No 117
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=84.07 E-value=3 Score=39.12 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=42.2
Q ss_pred CcEEEEEEecCC--CChhhh--HHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 334 RKHVLLLISSLD--LSDEEI--LVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 334 gK~VlL~fSal~--~~~~e~--~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
|..+.|+|++.| ||+|.. ++|. ++.++.++...++-|=+ |++
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~le---ela~e~~~~v~f~kVdi--------d~~----------------------- 72 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLP---ELLKAFPGRFRAAVVGR--------ADE----------------------- 72 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHH---HHHHHCCCcEEEEEEEC--------CCC-----------------------
Confidence 456778899997 888743 4555 33332233444444422 211
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCceecc
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
..|.+.|+++++|+|+++- +|+.+..
T Consensus 73 ----~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ----QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ----HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 1455668999999999986 6777643
No 118
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=83.04 E-value=2.7 Score=38.49 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=39.0
Q ss_pred hhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEecccChHHHHhh
Q 044391 481 ATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKNNAKERFRK 538 (691)
Q Consensus 481 ~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkdn~~e~v~~ 538 (691)
..+.+. .||++.|||.+ .|| ++..+.+.+++++. +..+++++|+-|...+.+++
T Consensus 11 v~l~~~--~gk~vll~Fwa--~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~ 70 (131)
T cd03009 11 VPVSSL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFND 70 (131)
T ss_pred ccHHHh--CCcEEEEEEEC--CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHH
Confidence 344555 89999999998 676 77788877775542 34799999998866544443
No 119
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=82.61 E-value=7.3 Score=36.34 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=42.7
Q ss_pred CCCceeecceecCcEEEEEEecCCCCh-hhhHHHH-HHHHhhccCCCCeeEEEEecc
Q 044391 322 SSRTRVNIEVLRRKHVLLLISSLDLSD-EEILVLH-LYREHKAREEFDYAIVWLPIV 376 (691)
Q Consensus 322 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~~~L~-iY~~lk~~~~~~fEIVwIpiV 376 (691)
.+|+.|+++.++||.+++.=-|..|.- ....-|+ +|++.+.+ .|+|+-.|.-
T Consensus 9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~---gl~ILaFPcn 62 (108)
T PF00255_consen 9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKDK---GLEILAFPCN 62 (108)
T ss_dssp TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGG---TEEEEEEEBS
T ss_pred CCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhcC---CeEEEeeehH
Confidence 356789999999999999998988843 3556799 99999854 5999999973
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=82.36 E-value=6 Score=28.84 Aligned_cols=60 Identities=15% Similarity=0.007 Sum_probs=38.7
Q ss_pred EEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHHH
Q 044391 338 LLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVK 414 (691)
Q Consensus 338 lL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r 414 (691)
+++|.+.||+.|.. ..+. + . ....++.++++++-+ ..+...+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~----~~~~~~~~~~~~~~~------~~~~~~~------------------------ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A----LLNKGVKFEAVDVDE------DPALEKE------------------------ 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H----hhCCCcEEEEEEcCC------ChHHhhH------------------------
Confidence 36778888877643 4455 5 1 225679999998622 1111112
Q ss_pred HHHHhhCcCCceEEEEeCCC
Q 044391 415 YAKEVWKFSKKAILVPVDPQ 434 (691)
Q Consensus 415 ~ike~f~~~~iP~LVvL~pq 434 (691)
...+++...|.+++.+++
T Consensus 46 --~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 --LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred --HHhCCCccccEEEEEeCC
Confidence 445788899999999887
No 121
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=1.9 Score=43.84 Aligned_cols=132 Identities=18% Similarity=0.340 Sum_probs=87.7
Q ss_pred CceecCCCCceeecceecCcEEEEEEecCCC---ChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHH
Q 044391 316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLDL---SDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFE 391 (691)
Q Consensus 316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~ 391 (691)
.-.++|.-+ .++++.++||+|+|+|=.+|. ||.|+.... -|.+.+ +-+-||+.+|. |+
T Consensus 16 ~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~---~~n~eVig~S~-DS------------- 77 (196)
T KOG0852|consen 16 TAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFR---KLNTEVLGIST-DS------------- 77 (196)
T ss_pred eEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHH---hcCCeEEEEec-cc-------------
Confidence 356788554 799999999999999988883 788888888 999988 45789999985 42
Q ss_pred HHhcCCCeeeecCCCC--------CchHHHHHHHHhhCc----CCce--EEEEeCCCCceec------------ccHHHH
Q 044391 392 QLQAMMPWYTVQHPTI--------IEPAVVKYAKEVWKF----SKKA--ILVPVDPQGRILN------------QNAFHM 445 (691)
Q Consensus 392 ~~~~~MPWyAVp~~d~--------i~~~~~r~ike~f~~----~~iP--~LVvL~pqGkv~~------------~NA~~m 445 (691)
.++-.-|-+.|-... +=....+.|.+.|++ .|++ -|.++||+|.+-. ..++.+
T Consensus 78 -~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRL 156 (196)
T KOG0852|consen 78 -VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRL 156 (196)
T ss_pred -hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHH
Confidence 123334444442110 001235677777877 4554 5899999886633 234455
Q ss_pred HHHhCcccccCChhhHHHHHhhhccchh
Q 044391 446 LWIWGNLAFPFSAEKEAALWKAESWRLE 473 (691)
Q Consensus 446 I~~wG~~AFPFT~~r~e~L~~~e~w~le 473 (691)
| +||-||....|-.-+ .|++.
T Consensus 157 v-----qAfQ~td~~geVcPa--gW~pg 177 (196)
T KOG0852|consen 157 V-----QAFQFTDEHGEVCPA--GWKPG 177 (196)
T ss_pred H-----HHHhhhhccCccccC--CCCCC
Confidence 4 688888777664433 45554
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=80.89 E-value=3.3 Score=46.02 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=48.8
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
+++.++++|-+.||++|.- +.+. +.+++++. ...|++..+ | .++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~---~~~i~~~~v-d-------~~~---------------------- 94 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK---KSEIVLASV-D-------ATE---------------------- 94 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc---CCcEEEEEE-E-------CCC----------------------
Confidence 4789999999999988752 5566 77776532 346788775 3 111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCce
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGkv 437 (691)
-+.+.+.|++++.|+++++...+.+
T Consensus 95 ---~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 ---EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ---CHHHHHhcCCCcccEEEEEECCceE
Confidence 1235667899999999999876554
No 123
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=79.84 E-value=4 Score=38.80 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=37.5
Q ss_pred ecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCC
Q 044391 332 LRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTII 408 (691)
Q Consensus 332 L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i 408 (691)
+.++.-.|.|...||+.+ .+++|. +=+.. .+.++=+|+- |++.+-.+.
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~r--------d~~~el~~~---------------- 89 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILR--------DENKELMDQ---------------- 89 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-H--------HHHHHHTTT----------------
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEe--------cCChhHHHH----------------
Confidence 346677899999999886 457777 76653 2466666653 444432222
Q ss_pred chHHHHHHHHhhCcCCceEEEEeCCCCceec
Q 044391 409 EPAVVKYAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 409 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
|+. .+.+.||++|++|.+|+++.
T Consensus 90 ------~lt--~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 90 ------YLT--NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp ------TTT---SS--SSEEEEE-TT--EEE
T ss_pred ------HHh--CCCeecCEEEEEcCCCCEeE
Confidence 111 46778999999999998873
No 124
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=79.58 E-value=7.9 Score=32.99 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=14.2
Q ss_pred hCcCCceEEEEeCCCCcee
Q 044391 420 WKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 420 f~~~~iP~LVvL~pqGkv~ 438 (691)
+++.++|++++ +|+.+
T Consensus 45 ~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 45 AGVTATPGVAV---DGELV 60 (76)
T ss_pred cCCCcCCEEEE---CCEEE
Confidence 69999999999 88776
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=78.32 E-value=4.6 Score=44.24 Aligned_cols=67 Identities=13% Similarity=-0.028 Sum_probs=45.6
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.++++|.+.||++|.- +.+. +.+.++.. +. .|.|+-+ | .++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~-~~--~v~~~~v-d-------~~~---------------------- 63 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKK-GP--PIKLAKV-D-------ATE---------------------- 63 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhc-CC--ceEEEEE-E-------CCC----------------------
Confidence 3678999999999988743 6677 88877643 22 4556554 2 211
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCC
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQG 435 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqG 435 (691)
-+.+.+.+++++.|+++++...+
T Consensus 64 ---~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 64 ---EKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred ---cHHHHHhCCCccccEEEEEeCCc
Confidence 01356678999999999996333
No 126
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=77.82 E-value=5.6 Score=37.66 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSA---KAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~---~~Ik~~a~~~~E~v~Vgkd 530 (691)
.++||.|+|++|+|+ .||+.+.... .+|++..+..|..|.|-.+
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC
Confidence 569999999999977 7778886632 4666666668888888665
No 127
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=77.56 E-value=8.1 Score=33.19 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCChhh--hHHHH-HHHHhh
Q 044391 334 RKHVLLLISSLDLSDEE--ILVLH-LYREHK 361 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e--~~~L~-iY~~lk 361 (691)
||.|+|+|.+.||++|. .+.+. +.++++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 48 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLK 48 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhc
Confidence 68999999999998874 35566 666665
No 128
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=77.23 E-value=12 Score=30.18 Aligned_cols=33 Identities=6% Similarity=-0.224 Sum_probs=18.4
Q ss_pred EEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEe
Q 044391 339 LLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLP 374 (691)
Q Consensus 339 L~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIp 374 (691)
.+|++.||++|.. +. +.+++.+. ..++++..|-
T Consensus 4 ~~f~~~~C~~C~~--~~~~l~~l~~~-~~~i~~~~id 37 (67)
T cd02973 4 EVFVSPTCPYCPD--AVQAANRIAAL-NPNISAEMID 37 (67)
T ss_pred EEEECCCCCCcHH--HHHHHHHHHHh-CCceEEEEEE
Confidence 5788899998843 22 34444332 3345555553
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=77.13 E-value=8.7 Score=38.90 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=16.1
Q ss_pred eecCcEEEEEEecCCCChhhh
Q 044391 331 VLRRKHVLLLISSLDLSDEEI 351 (691)
Q Consensus 331 ~L~gK~VlL~fSal~~~~~e~ 351 (691)
.+.+..+.+.|++.||++|..
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~ 150 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPY 150 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHH
Confidence 355666777799999998863
No 130
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=76.47 E-value=3.7 Score=38.72 Aligned_cols=24 Identities=0% Similarity=0.097 Sum_probs=19.3
Q ss_pred HHHHhhCcCCceEEEEeCCCCceec
Q 044391 415 YAKEVWKFSKKAILVPVDPQGRILN 439 (691)
Q Consensus 415 ~ike~f~~~~iP~LVvL~pqGkv~~ 439 (691)
-|.++|+++++|+|+++- +|+.+.
T Consensus 78 ~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred HHHHHcCCccccEEEEEE-CCEEEE
Confidence 455668999999999995 888664
No 131
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.46 E-value=1.6 Score=32.82 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCcc-cccCCCCCCCCceeecCCCCcccceee
Q 044391 654 HCNR-LILPDIHGPIPERLACAECGRTMEMFF 684 (691)
Q Consensus 654 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~v 684 (691)
.|.+ +++....+. .+.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 4666 555444444 88999999999887754
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=75.23 E-value=8.7 Score=33.77 Aligned_cols=45 Identities=7% Similarity=-0.084 Sum_probs=31.5
Q ss_pred hhcCCcEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeeEEeccc
Q 044391 486 WMKEERYICLYGGGDI-EWIRRFTTSA---KAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 486 ~i~egK~I~LYgG~D~-~Wir~FT~~~---~~Ik~~a~~~~E~v~Vgkd 530 (691)
-+++||.++|||++++ .||+.|.+.+ .++++..+..+.++.|--+
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 55 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT 55 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC
Confidence 3679999999999954 5558888765 4666554436777776543
No 133
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=75.22 E-value=8.3 Score=44.32 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=43.1
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.|++.|.+.||++|.. +.+. +.++++ +.+..++.|=+ |.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~---~~~v~~~kVdv--------D~~~---------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLA---GSGVKVAKFRA--------DGDQ---------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc---cCCcEEEEEEC--------CCCc----------------------
Confidence 6889999999999998853 4566 655554 22345555432 2111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCC
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQ 434 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pq 434 (691)
.....+.|++++.|+++++...
T Consensus 417 ---~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 417 ---KEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred ---cHHHHHHcCCCccceEEEEECC
Confidence 1123456899999999999654
No 134
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=73.75 E-value=5.6 Score=33.96 Aligned_cols=19 Identities=16% Similarity=-0.097 Sum_probs=17.0
Q ss_pred cCcEEEEEEecCCCChhhh
Q 044391 333 RRKHVLLLISSLDLSDEEI 351 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~ 351 (691)
+||.|+++|++.||+.|..
T Consensus 16 ~~kpvlv~f~a~wC~~C~~ 34 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKK 34 (82)
T ss_dssp HTSEEEEEEETTTTHHHHH
T ss_pred cCCCEEEEEECCCCHhHHH
Confidence 4899999999999988865
No 135
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=72.53 E-value=11 Score=35.64 Aligned_cols=38 Identities=8% Similarity=-0.098 Sum_probs=25.2
Q ss_pred cCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEe
Q 044391 333 RRKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLP 374 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIp 374 (691)
.+|.|.|-|++.||+||.. +. ++++|.++. .++ +++.=
T Consensus 13 ~~klVVVdF~a~WC~pCk~--mdp~l~ela~~~-~~~-~~f~k 51 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQ--LDDILSKTSHDL-SKM-ASIYL 51 (114)
T ss_pred CCCEEEEEEeCCCChhHHH--HHHHHHHHHHHc-cCc-eEEEE
Confidence 5899999999999999843 33 455554331 334 55554
No 136
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=71.99 E-value=13 Score=39.95 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=49.8
Q ss_pred CceecCCCCceeecceecCcEEEEEEecCC---CChhhhHHHH-HHHHhhccCCCCeeEEEEecccC
Q 044391 316 QPVVDGSSRTRVNIEVLRRKHVLLLISSLD---LSDEEILVLH-LYREHKAREEFDYAIVWLPIVDR 378 (691)
Q Consensus 316 ~~l~~g~~~~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~ 378 (691)
++-+...+|+.|.-.+|.||-+++||.=.. +||||+-.|. +-+++.++++-.-==|||++ |+
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsv-DP 186 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISV-DP 186 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEe-Cc
Confidence 555666777789999999999999998765 5889999999 99999877655444799986 53
No 137
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=71.24 E-value=9.9 Score=36.28 Aligned_cols=44 Identities=2% Similarity=-0.023 Sum_probs=34.9
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
++.||.++|||.+++ .+|+.+.+.+.++++..+..+.++.|.-|
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd 61 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD 61 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC
Confidence 568999999999954 55599999999998775556777777655
No 138
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=70.92 E-value=24 Score=38.62 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.9
Q ss_pred cCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCC---ceeeEEeccc
Q 044391 488 KEERYICLYGGGDIEWI---RRFTTSAKAVARAAQI---NLGMAYVGKN 530 (691)
Q Consensus 488 ~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~---~~E~v~Vgkd 530 (691)
..++.+++||.+ .|| +.|.+.+.++++..+. .+-++.+.-+
T Consensus 362 ~~~~~vlv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 362 DETKDVLVEFYA--PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred cCCCeEEEEEEC--CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 468999999999 666 8999999999877543 5667777654
No 139
>PRK10996 thioredoxin 2; Provisional
Probab=68.82 E-value=11 Score=35.61 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=35.5
Q ss_pred hhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 483 ILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 483 I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
....+++||.++|||.+ .|| +.+.+.+.++++..+..+..+.|.-+
T Consensus 45 ~~~~i~~~k~vvv~F~a--~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~ 93 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWA--PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE 93 (139)
T ss_pred HHHHHhCCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 34457789999999999 777 88999999998776666666666554
No 140
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=68.75 E-value=14 Score=31.44 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=36.7
Q ss_pred hhhcC-CcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 485 EWMKE-ERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 485 ~~i~e-gK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
+-+.+ ++.+.+||++ .|| +.|.+.+.++++..+.++.++.|..+..
T Consensus 11 ~~i~~~~~~vvv~f~~--~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 60 (103)
T PF00085_consen 11 KFINESDKPVVVYFYA--PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN 60 (103)
T ss_dssp HHHTTTSSEEEEEEES--TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS
T ss_pred HHHHccCCCEEEEEeC--CCCCccccccceecccccccccccccchhhhhcc
Confidence 33555 8999999999 676 9999999999887555888888877743
No 141
>PLN02309 5'-adenylylsulfate reductase
Probab=67.56 E-value=17 Score=41.81 Aligned_cols=67 Identities=9% Similarity=0.065 Sum_probs=41.8
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
++|.|+++|.+.||++|.- +.+. +.++++ +. .|.|.-+ |- |.++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~---~~--~V~f~kV-D~-----d~~~---------------------- 410 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLA---GS--GVKVAKF-RA-----DGDQ---------------------- 410 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc---cC--CeEEEEE-EC-----CCcc----------------------
Confidence 5899999999999999863 3444 544443 22 3555543 21 1111
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCC
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQG 435 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqG 435 (691)
....++.|++++.|+++++.+.+
T Consensus 411 ---~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 411 ---KEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred ---hHHHHhhCCCceeeEEEEEeCCC
Confidence 11223458999999999996543
No 142
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=67.48 E-value=8.9 Score=32.74 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=33.5
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeeEEecccChH
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSA---KAVARAAQINLGMAYVGKNNAK 533 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~---~~Ik~~a~~~~E~v~Vgkdn~~ 533 (691)
-++||.|++|+|+++ .||+.|...+ ..+++..+..|-.+.|--++..
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED 64 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC
Confidence 569999999999966 6778887754 4455534567777777666544
No 143
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=65.93 E-value=3.3 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=20.5
Q ss_pred CCcc-cccCCCCCCCCceeecCCCCc-ccceee
Q 044391 654 HCNR-LILPDIHGPIPERLACAECGR-TMEMFF 684 (691)
Q Consensus 654 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v 684 (691)
.|.+ +++=-.-+. ++.+.||+||. .+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~ 41 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVI 41 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEec
Confidence 4664 444333334 89999999999 888755
No 144
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=65.87 E-value=20 Score=31.27 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=34.1
Q ss_pred cCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 488 KEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 488 ~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
+.+|.+++|+.+.+ .+|+.+.+.+.++++..+..+.++.|.-+..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~ 56 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED 56 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC
Confidence 48899999998844 6669999999999877655677777766543
No 145
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=64.67 E-value=11 Score=35.85 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=39.2
Q ss_pred CcEEEEEEec-------CCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391 334 RKHVLLLISS-------LDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ 403 (691)
Q Consensus 334 gK~VlL~fSa-------l~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp 403 (691)
|+.+.|||.+ .|||.|.. +++. .++++ .++.-+|.+.+ .....|.|.+ ..|..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~----~~~~~lv~v~V-G~r~~Wkdp~-n~fR~----------- 81 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA----PENARLVYVEV-GDRPEWKDPN-NPFRT----------- 81 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-----STTEEEEEEE----HHHHC-TT-SHHHH-----------
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC----CCCceEEEEEc-CCHHHhCCCC-CCceE-----------
Confidence 4556666654 37888865 4565 55553 33567777764 2112343321 11211
Q ss_pred CCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceeccc
Q 044391 404 HPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQN 441 (691)
Q Consensus 404 ~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~N 441 (691)
-..|+++++|+|+-.+..+|.+...
T Consensus 82 -------------~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 82 -------------DPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp ---------------CC---SSSEEEECTSS-EEEHHH
T ss_pred -------------cceeeeeecceEEEECCCCccchhh
Confidence 0138999999999998777765443
No 146
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=64.00 E-value=14 Score=33.41 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccChHHHHhhhh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
.||.+.|||-+ .|| ++..+.+.++++.. .+.++.|+-++..+.+++.+
T Consensus 24 ~gk~vvv~F~a--~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 24 KGKPYLLNVWA--SWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHH
Confidence 69999999987 777 77788888886653 49999999777777776654
No 147
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.68 E-value=13 Score=37.36 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=57.5
Q ss_pred cCcEEEEEEecCCCChhhhHHHH--HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCch
Q 044391 333 RRKHVLLLISSLDLSDEEILVLH--LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEP 410 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~~~L~--iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~ 410 (691)
+||+.+|.|+...|+-|+-..=. -=.++++-..+.|-++-+-+-+ ...-.|.. +++-..
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~-------skpv~f~~------------g~kee~ 101 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISY-------SKPVLFKV------------GDKEEK 101 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEecc-------CcceEeec------------Cceeee
Confidence 48999999999999888754322 2233555455678888887622 22112211 111011
Q ss_pred HHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 411 AVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 411 ~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
.-.+-|.+.|.+++-|++|..|-.|+.+
T Consensus 102 ~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 102 MSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred ecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 2345778889999999999999999986
No 148
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=62.95 E-value=20 Score=29.08 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=31.3
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
+++++.++||+++++ .+|+++.+.+.++++. ...+.++.+.-+
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~ 50 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVD 50 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECC
Confidence 446577777777743 6779999999998776 566777776655
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=61.84 E-value=20 Score=36.94 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=56.7
Q ss_pred eecceecCcEEEEEEecCCCChhh--hHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391 327 VNIEVLRRKHVLLLISSLDLSDEE--ILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ 403 (691)
Q Consensus 327 V~Is~L~gK~VlL~fSal~~~~~e--~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp 403 (691)
--|..+.+++=++||-..+|+-|. .++|. +=++ -.++|+-||+ | . ..+| .
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~------yg~~v~~vs~-D-------G---------~~~~----~ 165 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADK------YGFSVIPVSL-D-------G---------RPIP----S 165 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHH------hCCEEEEEec-C-------C---------CCCc----C
Confidence 356778888888899999997663 45666 3333 3599999997 3 1 2344 2
Q ss_pred CCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccH
Q 044391 404 HPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNA 442 (691)
Q Consensus 404 ~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA 442 (691)
||+... -.-+.+.|++..-|+|++++|+++...+=|
T Consensus 166 fp~~~~---~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 166 FPNPRP---DPGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred CCCCCC---CHHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 332111 223555799999999999999885544433
No 150
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=61.33 E-value=29 Score=35.15 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
++.|.+.|++.||++|.. |. ++++|-.+. . ++.|+-| +.++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~--m~~~l~~LA~k~-~--~vkFvkI--------~ad~~------------------------ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRL--LNQHLSELARKF-P--DTKFVKI--------ISTQC------------------------ 144 (192)
T ss_pred CCEEEEEEECCCCchHHH--HHHHHHHHHHHC-C--CCEEEEE--------EhHHh------------------------
Confidence 468999999999999864 34 555554331 2 3666665 22210
Q ss_pred HHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHH
Q 044391 413 VKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALW 465 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~ 465 (691)
.+.|++++.|++++.- +|+++..= .+. ...|.. =||...+|.+-
T Consensus 145 ----~~~~~i~~lPTlliyk-~G~~v~~i-vG~-~~~gg~--~~~~~~lE~~L 188 (192)
T cd02988 145 ----IPNYPDKNLPTILVYR-NGDIVKQF-IGL-LEFGGM--NTTMEDLEWLL 188 (192)
T ss_pred ----HhhCCCCCCCEEEEEE-CCEEEEEE-eCc-hhhCCC--CCCHHHHHHHH
Confidence 1347899999999984 67666332 121 224555 67777776543
No 151
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=60.78 E-value=26 Score=29.17 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=35.9
Q ss_pred hhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHh--CCceeeEEeccc
Q 044391 484 LEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAA--QINLGMAYVGKN 530 (691)
Q Consensus 484 ~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a--~~~~E~v~Vgkd 530 (691)
.+-+++++.+++++.+++ .+|+.|.+.+.++++.. +..+.++.|.-+
T Consensus 9 ~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 9 DELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred HHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 344678888888888854 67799999999887775 577888777655
No 152
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=60.21 E-value=19 Score=31.38 Aligned_cols=47 Identities=4% Similarity=-0.064 Sum_probs=36.0
Q ss_pred hhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 485 EWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 485 ~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.-+++++.++++|.+.+ ..|+++.+.+.++++..+..+.+..|.-++
T Consensus 13 ~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~ 60 (101)
T cd03003 13 AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD 60 (101)
T ss_pred HHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc
Confidence 34678899999999833 335999999999988866667777777764
No 153
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=59.64 E-value=19 Score=31.73 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=34.2
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccChHHHHhhhh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
+||.+.|||-+ .|| ++..+.+.++++.....+.++.++ ++..+..++.+
T Consensus 20 ~gk~vvl~F~~--~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~ 71 (114)
T cd02967 20 PGRPTLLFFLS--PTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFL 71 (114)
T ss_pred CCCeEEEEEEC--CCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHH
Confidence 59999999987 676 778888888866544467778776 44445554444
No 154
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=59.26 E-value=15 Score=32.45 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=34.5
Q ss_pred cCCcEEEEEccCCh-hHHHHHHHHHHHH---HHHhCCceeeEEecccChHHHH
Q 044391 488 KEERYICLYGGGDI-EWIRRFTTSAKAV---ARAAQINLGMAYVGKNNAKERF 536 (691)
Q Consensus 488 ~egK~I~LYgG~D~-~Wir~FT~~~~~I---k~~a~~~~E~v~Vgkdn~~e~v 536 (691)
++||++.+||++.. .||+++.+.+.+. ....+..+.++++.-+.+++.-
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDES 55 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence 37999999998854 6679998888754 3333447889999888665433
No 155
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=59.01 E-value=64 Score=33.96 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEEe--cccC-CC-----CCChhhH-HHHHHHhcCCCeeee
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWLP--IVDR-SI-----AWDEGYR-QKFEQLQAMMPWYTV 402 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwIp--iVd~-s~-----~W~D~d~-~~F~~~~~~MPWyAV 402 (691)
+|++...||+.+||-|.- .-+.-|.+ ..+.+|.|+| +..+ |. -|...|+ +.++.+.....--.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~-----~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVD-----SGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhh-----cCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 789999999999988732 22321211 1246666666 3322 10 1333333 334444443322111
Q ss_pred cCCCCCchHHHH------HHHHhhCcCCceEEEEeCCCCce
Q 044391 403 QHPTIIEPAVVK------YAKEVWKFSKKAILVPVDPQGRI 437 (691)
Q Consensus 403 p~~d~i~~~~~r------~ike~f~~~~iP~LVvL~pqGkv 437 (691)
......+.+..+ .+-+.++++|-|++|+.|.+|++
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 111111122222 34578999999999999999984
No 156
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=58.37 E-value=20 Score=34.07 Aligned_cols=52 Identities=6% Similarity=-0.027 Sum_probs=38.0
Q ss_pred CCcEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhh
Q 044391 489 EERYICLYGGGDI-EWIRRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
.||.+.|||-+.+ ..|++..+.+.++.+.. +..+.++.|+.|++.|.+++.+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH
Confidence 7899999998722 33488888888886653 4569999999987766665544
No 157
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=58.17 E-value=22 Score=30.57 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=31.9
Q ss_pred CCcEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 489 EERYICLYGGGDIEW---IRRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~~W---ir~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.|+.+++||.+ .| |+++.+.+.++++..+..+-++.|.-++
T Consensus 11 ~~~~vlv~f~a--~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~ 54 (96)
T cd02956 11 TQVPVVVDFWA--PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA 54 (96)
T ss_pred CCCeEEEEEEC--CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC
Confidence 48899999999 67 5999999999987755556666666554
No 158
>PHA02125 thioredoxin-like protein
Probab=57.37 E-value=29 Score=29.27 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=12.4
Q ss_pred HHHHhhCcCCceEEE
Q 044391 415 YAKEVWKFSKKAILV 429 (691)
Q Consensus 415 ~ike~f~~~~iP~LV 429 (691)
.+.+.|++++.|+++
T Consensus 37 ~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 37 ELTAKHHIRSLPTLV 51 (75)
T ss_pred HHHHHcCCceeCeEE
Confidence 456678999999987
No 159
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=56.00 E-value=27 Score=29.44 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=36.9
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccCh-HHHHhhhhh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNNA-KERFRKISR 541 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~-~e~v~~~~~ 541 (691)
.||++.+++.+ .|| +.+.+.+.++.+.. +..+.++.|+.|.. .|.+++.++
T Consensus 18 ~~k~~ll~f~~--~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~ 73 (116)
T cd02966 18 KGKVVLVNFWA--SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLK 73 (116)
T ss_pred CCCEEEEEeec--ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHH
Confidence 48999999988 565 88888888886653 25688888888865 566655443
No 160
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=55.55 E-value=5.9 Score=29.83 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=9.8
Q ss_pred ceeecCCCCcccce
Q 044391 669 ERLACAECGRTMEM 682 (691)
Q Consensus 669 ~~i~CpeC~R~ME~ 682 (691)
..+.||+|+|++--
T Consensus 3 ~~~~C~nC~R~v~a 16 (33)
T PF08209_consen 3 PYVECPNCGRPVAA 16 (33)
T ss_dssp -EEE-TTTSSEEEG
T ss_pred CeEECCCCcCCcch
Confidence 46899999998753
No 161
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=55.33 E-value=19 Score=35.02 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=34.0
Q ss_pred cCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccChHHHHhh
Q 044391 488 KEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNAKERFRK 538 (691)
Q Consensus 488 ~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~ 538 (691)
..||.++|||-+ .|| +++.+.+.++++. .++++.|+.+...+..++
T Consensus 61 ~~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~ 109 (173)
T TIGR00385 61 IQGKPVLLNVWA--SWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALK 109 (173)
T ss_pred cCCCEEEEEEEC--CcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHH
Confidence 379999999988 566 8888888888654 588999986654444443
No 162
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=55.06 E-value=26 Score=31.07 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred hhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhC-CceeeEEecccC
Q 044391 485 EWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQ-INLGMAYVGKNN 531 (691)
Q Consensus 485 ~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~-~~~E~v~Vgkdn 531 (691)
..++.|+.++|||.+ .|| +.+.+.+.+++++.+ ..+..+.|.-|+
T Consensus 12 ~~i~~~~~vvv~F~a--~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~ 60 (102)
T cd02948 12 ELLSNKGLTVVDVYQ--EWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT 60 (102)
T ss_pred HHHccCCeEEEEEEC--CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC
Confidence 346789999999999 777 999999999977644 346677776663
No 163
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=55.02 E-value=34 Score=29.39 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.++.+.+|+++++ ..||+|.+.+.++++.....+.++.+..++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 5666888888843 445999999999987755567777776653
No 164
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=53.24 E-value=22 Score=30.03 Aligned_cols=42 Identities=5% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
.++.+.||+.+ .|| +.+.+.+.++++..+..+.++.|..++.
T Consensus 13 ~~~~vvi~f~~--~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 57 (101)
T TIGR01068 13 SDKPVLVDFWA--PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57 (101)
T ss_pred cCCcEEEEEEC--CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC
Confidence 46799999988 565 9999999999877666688888876643
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=52.80 E-value=1.3e+02 Score=29.92 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCChhhhHHHHHHHHhhccCCCCeeEEEEe--cccC--C-----CCCChhhH-HHHHHHhcCCC-eeee
Q 044391 334 RKHVLLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLP--IVDR--S-----IAWDEGYR-QKFEQLQAMMP-WYTV 402 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~iY~~lk~~~~~~fEIVwIp--iVd~--s-----~~W~D~d~-~~F~~~~~~MP-WyAV 402 (691)
+|+.+.+|++.+||.|.- .+..+++. ..++.|.+++ +... | .-|...++ +.+..+....+ .-..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~----~~~~l~~~-~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRK----LEKELKPN-ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHH----HHHHHhhc-cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 789999999999988843 22233321 3446666664 4221 0 02332332 33444443321 1011
Q ss_pred cCCCCCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 403 QHPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 403 p~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
..-+ .+......+.+.+++++.|++|+ ++|+++
T Consensus 152 ~~~~-~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 152 ASCD-NPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred cccC-chHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 1111 12233446668899999999984 447664
No 166
>PHA02278 thioredoxin-like protein
Probab=52.48 E-value=15 Score=33.41 Aligned_cols=42 Identities=2% Similarity=0.059 Sum_probs=31.4
Q ss_pred hcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
+++++.+.+||.+ .|| |.+.+.+.++++..+....++.|--|
T Consensus 11 i~~~~~vvV~F~A--~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd 55 (103)
T PHA02278 11 IRQKKDVIVMITQ--DNCGKCEILKSVIPMFQESGDIKKPILTLNLD 55 (103)
T ss_pred HhCCCcEEEEEEC--CCCHHHHhHHHHHHHHHhhhcCCceEEEEECC
Confidence 5689999999999 676 99999999997663333445555444
No 167
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=51.53 E-value=7.5 Score=31.68 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=16.7
Q ss_pred CcccccCCC-CC---CCCceeecCCCCccc
Q 044391 655 CNRLILPDI-HG---PIPERLACAECGRTM 680 (691)
Q Consensus 655 C~~~~~p~~-~g---~ip~~i~CpeC~R~M 680 (691)
-|++.+|.. -. .=.+.+.||+|||.+
T Consensus 27 gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 27 GCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 356777622 11 116789999999975
No 168
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=50.55 E-value=10 Score=30.15 Aligned_cols=31 Identities=16% Similarity=0.435 Sum_probs=19.4
Q ss_pred CCcc-cccCCCCCCCCceeecCCCCc-ccceeee
Q 044391 654 HCNR-LILPDIHGPIPERLACAECGR-TMEMFFM 685 (691)
Q Consensus 654 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v~ 685 (691)
.|.+ +++-...+. .+.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~s 42 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLLS 42 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEec
Confidence 3555 544322233 67789999998 6776544
No 169
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=50.36 E-value=29 Score=31.57 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=34.0
Q ss_pred hhhhhcCC-cEEEEEccCCh-hHHHHHHHHHH---HHHHHhCCceeeEEecccC
Q 044391 483 ILEWMKEE-RYICLYGGGDI-EWIRRFTTSAK---AVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 483 I~~~i~eg-K~I~LYgG~D~-~Wir~FT~~~~---~Ik~~a~~~~E~v~Vgkdn 531 (691)
+.+-.++| |.|+++|++++ .||+++.+.+. ++++..+..+.++.|.-+.
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 59 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDG 59 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccC
Confidence 33446799 99999999965 66688887663 4544434467778876653
No 170
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=50.31 E-value=25 Score=35.25 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCCCceeecceecCcEEEEEEecCCCCh-hhhHHHH-HHHHhhccCCCCeeEEEEec
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDLSD-EEILVLH-LYREHKAREEFDYAIVWLPI 375 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~~~L~-iY~~lk~~~~~~fEIVwIpi 375 (691)
..+|..++++.++||.+++.=.|.-|-= -..--|+ +|++.+. ..|||+=.|.
T Consensus 12 ~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~---~Gf~VLgFPc 65 (162)
T COG0386 12 DIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKD---KGFEVLGFPC 65 (162)
T ss_pred ccCCCCccHHHhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhh---CCcEEEeccc
Confidence 3466789999999999999888887721 1344589 9999984 5699999997
No 171
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=48.94 E-value=32 Score=29.31 Aligned_cols=46 Identities=9% Similarity=0.137 Sum_probs=32.0
Q ss_pred hhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCC--ceeeEEeccc
Q 044391 483 ILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQI--NLGMAYVGKN 530 (691)
Q Consensus 483 I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~--~~E~v~Vgkd 530 (691)
+..-++.|+.++|+|.+ .|| |+|.+.+.++++..+. .+-++.+.-+
T Consensus 6 ~~~~~~~~~~~~i~f~~--~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYA--PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred HHHHhccCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 33345689999999999 777 8888888888766332 3555544444
No 172
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=48.43 E-value=29 Score=34.34 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=35.1
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccChHHHHhhhh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNAKERFRKIS 540 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v~~~~ 540 (691)
.||.+.|+|-+ .|| ++..+.+.++++. .++++.|+-++..+.+++.+
T Consensus 67 ~gk~vvv~Fwa--twC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~ 116 (185)
T PRK15412 67 QGKPVLLNVWA--TWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWL 116 (185)
T ss_pred CCCEEEEEEEC--CCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHH
Confidence 79999999988 565 8888888888643 68899998665555555543
No 173
>PTZ00051 thioredoxin; Provisional
Probab=48.21 E-value=36 Score=29.18 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=24.9
Q ss_pred hhcCCcEEEEEccCChhHH---HHHHHHHHHHHHH
Q 044391 486 WMKEERYICLYGGGDIEWI---RRFTTSAKAVARA 517 (691)
Q Consensus 486 ~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~ 517 (691)
-++.++.+.|||++ .|| |+|.+.+.++++.
T Consensus 14 ~~~~~~~vli~f~~--~~C~~C~~~~~~l~~l~~~ 46 (98)
T PTZ00051 14 TLSQNELVIVDFYA--EWCGPCKRIAPFYEECSKE 46 (98)
T ss_pred HHhcCCeEEEEEEC--CCCHHHHHHhHHHHHHHHH
Confidence 35688999999999 566 8999999988776
No 174
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=48.21 E-value=33 Score=30.04 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=39.1
Q ss_pred CChhhHHHHHhhhccchhhhcccCchhh---hhhhc--CCcEEEEEccCChhHHHHHHHHHHHHHHHhCCceeeE
Q 044391 456 FSAEKEAALWKAESWRLELLIDDIDATI---LEWMK--EERYICLYGGGDIEWIRRFTTSAKAVARAAQINLGMA 525 (691)
Q Consensus 456 FT~~r~e~L~~~e~w~lelLvd~id~~I---~~~i~--egK~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v 525 (691)
+|.+.+.+..++..-....+ +.+ .+|+. .||..|||-+.|.+ ++++.++++|.+.+-+
T Consensus 12 it~e~l~~~~~~~~~~~~~~-----~~V~w~~s~v~~d~~k~~Cly~Ap~~e-------aV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 12 ITAEDLAAAHAKSCAVQAEM-----PGVQWLRSYVSEDDGKIFCLYEAPDEE-------AVREHARRAGLPADRI 74 (77)
T ss_pred CCHHHHHHHHHHhHHHHhhc-----CCeEEEEEEEecCCCeEEEEEECCCHH-------HHHHHHHHcCCCcceE
Confidence 56666666665543333322 344 46777 89999999999876 6777777777776544
No 175
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=48.03 E-value=1.3e+02 Score=28.22 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=53.9
Q ss_pred ecceecCcEEEEEEecCCCChhhh-HH---HH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeee
Q 044391 328 NIEVLRRKHVLLLISSLDLSDEEI-LV---LH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTV 402 (691)
Q Consensus 328 ~Is~L~gK~VlL~fSal~~~~~e~-~~---L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAV 402 (691)
+++.+++|+=.|.++|.+.....+ .. |. -...|.+| .||++.+++.... ..+
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-----di~v~~i~~~~~~------~~~------------ 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-----DIVVIVITGDGAR------SPG------------ 58 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-----ceEEEEEeCCccc------ccc------------
Confidence 456778877777777765433222 22 33 34445555 6888888763111 111
Q ss_pred cCCCCCchHHHHHHHHhhCcC-CceEEEEeCCCCceecc
Q 044391 403 QHPTIIEPAVVKYAKEVWKFS-KKAILVPVDPQGRILNQ 440 (691)
Q Consensus 403 p~~d~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~~ 440 (691)
...+....+.|++.|++. +--.+|++|-||.+=..
T Consensus 59 ---~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 59 ---KPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred ---CcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 233566788889999974 34789999999976543
No 176
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=47.50 E-value=33 Score=30.19 Aligned_cols=49 Identities=8% Similarity=0.157 Sum_probs=33.9
Q ss_pred CchhhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeeEEeccc
Q 044391 479 IDATILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA---QINLGMAYVGKN 530 (691)
Q Consensus 479 id~~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a---~~~~E~v~Vgkd 530 (691)
.+....+ ++.++.++|+|.+ .|| |++.+.+.++++.. +..+.+..+.-+
T Consensus 5 ~~~~~~~-~~~~~~vlv~f~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 5 LDDSFKD-VRKEDIWLVDFYA--PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred chhhhhh-hccCCeEEEEEEC--CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 4444443 4567899999999 777 88999898887763 334666666544
No 177
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=46.30 E-value=1.4e+02 Score=31.16 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCChhhh--HHHHHHHHhhccCCCCeeEEEE--eccc-CC-------CCCChh-hHHHHHHHhcCCCee
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLHLYREHKAREEFDYAIVWL--PIVD-RS-------IAWDEG-YRQKFEQLQAMMPWY 400 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~iY~~lk~~~~~~fEIVwI--piVd-~s-------~~W~D~-d~~~F~~~~~~MPWy 400 (691)
||++...||+.+||-|.- ..|. ++. +.+.+|.++ |+.. ++ .-|-.. ..+.|+.....-+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~---~~~---~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~-- 178 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMK---DYN---ALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD-- 178 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHH---HHh---cCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC--
Confidence 788999999999988742 2233 211 223666665 5421 11 124332 2355665543321
Q ss_pred eecCCC-CCchHHHHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 401 TVQHPT-IIEPAVVKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 401 AVp~~d-~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
++-.. ..+.+....+.+.++++|-|++|+ ++|+++
T Consensus 179 -~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 -VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred -CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 11110 012345567779999999999995 468776
No 178
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=45.97 E-value=42 Score=31.67 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
.++.+.++|++ .|| |.+.+.+.+++++-...+..+.|--|+-
T Consensus 13 ~~~~vVV~F~A--~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~ 57 (114)
T cd02954 13 EEKVVVIRFGR--DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV 57 (114)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHccCceEEEEEECCCC
Confidence 57889999999 777 9999999999887555577888877743
No 179
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=45.70 E-value=60 Score=31.79 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=40.5
Q ss_pred cCcEEEEEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCc
Q 044391 333 RRKHVLLLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIE 409 (691)
Q Consensus 333 ~gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~ 409 (691)
.+|.|++-|++.||+||.. ++|. +=++++ +...|+=| |- |+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kV---DV-----De------------------------ 65 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLV---DI-----TE------------------------ 65 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEE---EC-----CC------------------------
Confidence 3679999999999999853 4555 444432 22444433 31 32
Q ss_pred hHHHHHHHHhhCcCCceEEEEeCCCCc
Q 044391 410 PAVVKYAKEVWKFSKKAILVPVDPQGR 436 (691)
Q Consensus 410 ~~~~r~ike~f~~~~iP~LVvL~pqGk 436 (691)
..-+.+.|++++.|+++.+=-+|+
T Consensus 66 ---~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 66 ---VPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred ---CHHHHHHcCccCCCcEEEEEECCe
Confidence 123445589998888886655665
No 180
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=44.48 E-value=48 Score=28.90 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=31.9
Q ss_pred cCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 488 KEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 488 ~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
..++.++++|.+ .|| +.+.+.+.++++..+..+.+..|.-+.
T Consensus 17 ~~~~~v~v~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 61 (104)
T cd03004 17 NRKEPWLVDFYA--PWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61 (104)
T ss_pred cCCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 357899999999 566 999999999987755556666666553
No 181
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=42.97 E-value=1.6e+02 Score=24.12 Aligned_cols=85 Identities=8% Similarity=-0.162 Sum_probs=42.2
Q ss_pred EEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCC--CChhhHHHHHHHhcCCCeeeecCCCCCchHHH
Q 044391 339 LLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIA--WDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVV 413 (691)
Q Consensus 339 L~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~--W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~ 413 (691)
.+|++..||.|.. ..|. +- +. ...+.+++|.|+.-.... .+...-......... ...-.+-+. -.-
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---l~~ 72 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLL---YA-DDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ--GKFEALHEA---LAD 72 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHH---hh-cCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHc--CcHHHHHHH---HHH
Confidence 4688888988754 3344 22 22 256799999997422110 111111111111110 000011000 023
Q ss_pred HHHHHhhCcCCceEEEEeC
Q 044391 414 KYAKEVWKFSKKAILVPVD 432 (691)
Q Consensus 414 r~ike~f~~~~iP~LVvL~ 432 (691)
..+.+..++.+.|++|+-|
T Consensus 73 ~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 73 TALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHcCCCCCCEEEECC
Confidence 3445778999999999987
No 182
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=42.49 E-value=52 Score=30.05 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=31.3
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
++.++.+.+|+++++ ..|+.+-+.+.++++.. ..++++.|..+.
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~ 63 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE 63 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc
Confidence 457888999999943 34488888888887664 346666666653
No 183
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=42.06 E-value=12 Score=29.76 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.9
Q ss_pred ceeecCCCCcccce
Q 044391 669 ERLACAECGRTMEM 682 (691)
Q Consensus 669 ~~i~CpeC~R~ME~ 682 (691)
..+.|++||++|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 56899999999954
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=41.94 E-value=41 Score=29.37 Aligned_cols=43 Identities=7% Similarity=-0.102 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.|+.++++|.+++ ..|+++.+.+.++++..+..+.++.|.-++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 6788999999932 334899999999987766567777776653
No 185
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=41.08 E-value=85 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=29.5
Q ss_pred CcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 490 ERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 490 gK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
+|.+.++|.+++ .+||++.+.+.++++.....+-++.|.-+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 599999998844 55599999999987764445566655443
No 186
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=40.90 E-value=59 Score=29.67 Aligned_cols=44 Identities=7% Similarity=-0.130 Sum_probs=33.2
Q ss_pred hhhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecc
Q 044391 482 TILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGK 529 (691)
Q Consensus 482 ~I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgk 529 (691)
.+.+. .||.+.|||-+ .|| +.-.+.+.++.++. +..++++.|..
T Consensus 17 ~l~~~--~gk~vvl~F~a--~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 17 SLAQL--RGKVVLLDFWT--YCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CHHHh--CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 34455 78999999977 676 77788888887764 46799999865
No 187
>PRK09381 trxA thioredoxin; Provisional
Probab=40.32 E-value=54 Score=28.93 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=33.7
Q ss_pred hcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 487 MKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 487 i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.+.++.+.++|-+ .|| +.+.+.+.++++..+..+.++.|.-+.
T Consensus 18 ~~~~~~vvv~f~~--~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~ 63 (109)
T PRK09381 18 LKADGAILVDFWA--EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63 (109)
T ss_pred hcCCCeEEEEEEC--CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC
Confidence 3467889999988 575 999999999988765567778777664
No 188
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=40.16 E-value=51 Score=28.26 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred hhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCC---ceeeEEeccc
Q 044391 485 EWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQI---NLGMAYVGKN 530 (691)
Q Consensus 485 ~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~---~~E~v~Vgkd 530 (691)
.-+..++ ++++|.+ .|| +.+.+.+.++++..+. .+.++.|.-+
T Consensus 12 ~~~~~~~-~lv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 12 HHIAEGN-HFVKFFA--PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred HHhhcCC-EEEEEEC--CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 3355665 8888888 676 8999999999776433 6777777655
No 189
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=39.84 E-value=57 Score=29.10 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=30.4
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
.||.+.++|.+ .|| |.+.+.+.++++..+ .+..+-|..+
T Consensus 17 ~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYA--SWCPFSASFRPHFNALSSMFP-QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc-cCceEEEECC
Confidence 89999999999 786 999999999987743 3555555443
No 190
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=39.83 E-value=51 Score=31.82 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=26.8
Q ss_pred hhhcCCcEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeeEEe
Q 044391 485 EWMKEERYICLYGGGDI-EWIRRFTTSA---KAVARAAQINLGMAYV 527 (691)
Q Consensus 485 ~~i~egK~I~LYgG~D~-~Wir~FT~~~---~~Ik~~a~~~~E~v~V 527 (691)
.--++||.|+||+|+|+ .||+++.... .+|++.++..|=+|-+
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l 64 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNL 64 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEE
Confidence 33569999999999955 5556666543 3454544445543333
No 191
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=39.78 E-value=41 Score=34.07 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCCceeecceecCcEEEEEEecCCC--ChhhhHHHH-HHHHhhccCCCCeeEEEEec
Q 044391 321 GSSRTRVNIEVLRRKHVLLLISSLDL--SDEEILVLH-LYREHKAREEFDYAIVWLPI 375 (691)
Q Consensus 321 g~~~~kV~Is~L~gK~VlL~fSal~~--~~~e~~~L~-iY~~lk~~~~~~fEIVwIpi 375 (691)
..+|..|+++.++||.|++-=-|.-| .+....-|. .|++.+. ..|+|+--|.
T Consensus 21 d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPC 75 (171)
T KOG1651|consen 21 DLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPC 75 (171)
T ss_pred cCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEecc
Confidence 45667899999999999998888877 333556788 9999984 4699999997
No 192
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=39.71 E-value=42 Score=31.05 Aligned_cols=30 Identities=3% Similarity=-0.104 Sum_probs=24.3
Q ss_pred hcCCcEEEEEccCCh-hHHHHHHHHHHHHHH
Q 044391 487 MKEERYICLYGGGDI-EWIRRFTTSAKAVAR 516 (691)
Q Consensus 487 i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~ 516 (691)
.++||-|+++|++++ .||+.+.+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~ 46 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKE 46 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHH
Confidence 458999999999966 777999888777644
No 193
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=39.24 E-value=1.3e+02 Score=34.12 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=43.4
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHhhcccchhHHHHHH
Q 044391 251 WELASLAHRVSRILEHFKKLIAICYQQID----ENRQIEAYHNLVRLLETIHMDNMKVLRA 307 (691)
Q Consensus 251 ~eLS~l~~Kl~~i~~~L~~~l~~c~~~I~----e~~~~e~y~~l~~lf~t~~~D~~~vLk~ 307 (691)
-++.++.+-|..++.-|-+|-+.|..-+. +....+.|+.+.+++...-.+.=+|++-
T Consensus 199 ~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~e 259 (412)
T PF04108_consen 199 KELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKE 259 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHH
Confidence 57888889999999999999999999887 6667788888888775443333333443
No 194
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=38.35 E-value=66 Score=28.46 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=33.2
Q ss_pred hhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhC------CceeeEEecccC
Q 044391 483 ILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQ------INLGMAYVGKNN 531 (691)
Q Consensus 483 I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~------~~~E~v~Vgkdn 531 (691)
...-++.++.++++|.+ .|| +++.+.+.++++... ..+.+..|.-++
T Consensus 11 f~~~i~~~~~vlv~F~a--~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~ 66 (108)
T cd02996 11 IDDILQSAELVLVNFYA--DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK 66 (108)
T ss_pred HHHHHhcCCEEEEEEEC--CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 33446788999999999 565 889888888765421 246677776554
No 195
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=38.29 E-value=70 Score=27.33 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeeEEeccc
Q 044391 489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQ--INLGMAYVGKN 530 (691)
Q Consensus 489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~--~~~E~v~Vgkd 530 (691)
.|+.++|++.+++ .+|+.|.+.+.++++... ..+.++.|.-+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 5688999888844 566999999999987632 35777777665
No 196
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.23 E-value=2.1e+02 Score=31.69 Aligned_cols=68 Identities=15% Similarity=-0.012 Sum_probs=45.9
Q ss_pred CcEEEEEEecCCCChhhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHH
Q 044391 334 RKHVLLLISSLDLSDEEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAV 412 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~ 412 (691)
++.+++.|-+.||.+|.- |. .|.++-...++ +|=+.-||. ..
T Consensus 47 ~~~~~v~fyapwc~~c~~--l~~~~~~~~~~l~~---~~~~~~vd~--------------------------------~~ 89 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKK--LAPTYKKLAKALKG---KVKIGAVDC--------------------------------DE 89 (383)
T ss_pred CCceEEEEECCCCcchhh--hchHHHHHHHHhcC---ceEEEEeCc--------------------------------hh
Confidence 678899999999987632 33 45554322222 455555442 34
Q ss_pred HHHHHHhhCcCCceEEEEeCCCCcee
Q 044391 413 VKYAKEVWKFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 413 ~r~ike~f~~~~iP~LVvL~pqGkv~ 438 (691)
.+.+.+.+++++-|+++++.|..+.+
T Consensus 90 ~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 90 HKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred hHHHHHhcCCccCcEEEEEcCCCcee
Confidence 56677789999999999999884444
No 197
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=38.14 E-value=47 Score=29.56 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
.||.+.++|.+ .|| +.+.+.+.++++.. ..+..+.|..|
T Consensus 14 ~~k~vvv~F~a--~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d 55 (103)
T cd02985 14 KGRLVVLEFAL--KHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGD 55 (103)
T ss_pred CCCEEEEEEEC--CCCHhHHHHhHHHHHHHHHC-CCCEEEEEECC
Confidence 49999999999 677 99999999998774 45666666655
No 198
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.82 E-value=16 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.689 Sum_probs=18.7
Q ss_pred cCCCCCCc--ccccCCCCCCCCceeecCCCCcc
Q 044391 649 VHTPRHCN--RLILPDIHGPIPERLACAECGRT 679 (691)
Q Consensus 649 ~~~~~~C~--~~~~p~~~g~ip~~i~CpeC~R~ 679 (691)
.+.||+|. |..+--.-.+ -++.|.+|||+
T Consensus 13 MKK~H~Cg~NrwkIiRvGaD--IkikC~nC~h~ 43 (60)
T COG4481 13 MKKPHACGTNRWKIIRVGAD--IKIKCENCGHS 43 (60)
T ss_pred ecCCCccccceEEEEEecCc--EEEEecCCCcE
Confidence 34488884 4444333333 37999999996
No 199
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=37.04 E-value=16 Score=25.58 Aligned_cols=13 Identities=38% Similarity=0.974 Sum_probs=10.5
Q ss_pred ceeecCCCCcccc
Q 044391 669 ERLACAECGRTME 681 (691)
Q Consensus 669 ~~i~CpeC~R~ME 681 (691)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 3578999999864
No 200
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=36.86 E-value=49 Score=30.26 Aligned_cols=45 Identities=4% Similarity=0.096 Sum_probs=31.3
Q ss_pred hhhhhcCCcEEEEEccCChhHH----HHHHHHHHHHHHHhC----CceeeEEecccC
Q 044391 483 ILEWMKEERYICLYGGGDIEWI----RRFTTSAKAVARAAQ----INLGMAYVGKNN 531 (691)
Q Consensus 483 I~~~i~egK~I~LYgG~D~~Wi----r~FT~~~~~Ik~~a~----~~~E~v~Vgkdn 531 (691)
+.++ .||++.|+|.+ .|| +.-.+.++++.++.+ ..++++.|+.|.
T Consensus 17 l~~~--~gk~~vl~f~~--~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 17 LSDL--KGKPVLVYFGY--THCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred hHHh--CCCEEEEEEEc--CCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3445 78999999877 555 556666666655432 359999999874
No 201
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=36.70 E-value=66 Score=27.60 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=27.0
Q ss_pred hhhhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHh
Q 044391 482 TILEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAA 518 (691)
Q Consensus 482 ~I~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a 518 (691)
...+.++.++.++++|.+++ ..|+++.+.+..+++..
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 34455778899999999843 44588888888886653
No 202
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.05 E-value=17 Score=31.40 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=13.5
Q ss_pred CCceeecCCCCcccce
Q 044391 667 IPERLACAECGRTMEM 682 (691)
Q Consensus 667 ip~~i~CpeC~R~ME~ 682 (691)
..-++.||.||++.+-
T Consensus 4 ~~~~v~CP~Cgkpv~w 19 (65)
T COG3024 4 LRITVPCPTCGKPVVW 19 (65)
T ss_pred ccccccCCCCCCcccc
Confidence 3568999999999887
No 203
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=34.22 E-value=70 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccC
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn 531 (691)
.||.++++|-+ .|| +.+.+.+.++++.. +..+.++.|.-++
T Consensus 23 ~~~~vlV~F~a--~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~ 67 (111)
T cd02963 23 FKKPYLIKITS--DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH 67 (111)
T ss_pred CCCeEEEEEEC--CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc
Confidence 78999999999 777 88888888887764 3357777776653
No 204
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=33.75 E-value=34 Score=28.46 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=20.7
Q ss_pred CCcc-cccCCCCCCCCceeecCCCCccccee
Q 044391 654 HCNR-LILPDIHGPIPERLACAECGRTMEMF 683 (691)
Q Consensus 654 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~ 683 (691)
.|.. +.+|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 3655 67765433 7789999999999884
No 205
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.73 E-value=46 Score=33.10 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=31.6
Q ss_pred CcEEEEEEecCCCChhhh--HHHH-HHHHhhcc-------------CCCCeeEEEEecc
Q 044391 334 RKHVLLLISSLDLSDEEI--LVLH-LYREHKAR-------------EEFDYAIVWLPIV 376 (691)
Q Consensus 334 gK~VlL~fSal~~~~~e~--~~L~-iY~~lk~~-------------~~~~fEIVwIpiV 376 (691)
+..|++=|.|.||.||.. ++|+ +=.+++.+ .-++|+|=-||.|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 568999999999999875 7777 65554421 1478888888864
No 206
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=1.1e+02 Score=27.57 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=46.6
Q ss_pred EEEEecCCCChhhhHHHHHHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCCCCchHHHHHHH
Q 044391 338 LLLISSLDLSDEEILVLHLYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPTIIEPAVVKYAK 417 (691)
Q Consensus 338 lL~fSal~~~~~e~~~L~iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d~i~~~~~r~ik 417 (691)
-||+|-+ ||++..+ ++ .|. +.+-+||-|=|- . +-...+.|-.++.+||= | | .+ |
T Consensus 5 ~lfgsn~-Cpdca~a-~e---yl~-rl~v~yd~VeIt--~-----Sm~NlKrFl~lRDs~~~----F-d----~v-k--- 58 (85)
T COG4545 5 KLFGSNL-CPDCAPA-VE---YLE-RLNVDYDFVEIT--E-----SMANLKRFLHLRDSRPE----F-D----EV-K--- 58 (85)
T ss_pred eeecccc-CcchHHH-HH---HHH-HcCCCceeeehh--h-----hhhhHHHHHhhhccchh----H-H----hh-h---
Confidence 4666665 5554322 22 222 226778877763 2 36778999999999983 3 2 12 2
Q ss_pred HhhCcCCceEEEEeCCCCceecc
Q 044391 418 EVWKFSKKAILVPVDPQGRILNQ 440 (691)
Q Consensus 418 e~f~~~~iP~LVvL~pqGkv~~~ 440 (691)
.+++-|||.|.+ +||+++--
T Consensus 59 -~~gyiGIPall~--~d~~vVl~ 78 (85)
T COG4545 59 -SNGYIGIPALLT--DDGKVVLG 78 (85)
T ss_pred -hcCcccceEEEe--CCCcEEEe
Confidence 268899999754 78888753
No 207
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=33.02 E-value=61 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
.||.++|||.+ .|| +.+.+.+.+++++ ++++.|+-+
T Consensus 19 ~~k~~vl~F~~--~~C~~C~~~~~~l~~~~~~----~~~i~i~~~ 57 (123)
T cd03011 19 SGKPVLVYFWA--TWCPVCRFTSPTVNQLAAD----YPVVSVALR 57 (123)
T ss_pred CCCEEEEEEEC--CcChhhhhhChHHHHHHhh----CCEEEEEcc
Confidence 78999999988 566 8888888888655 455556544
No 208
>PRK02935 hypothetical protein; Provisional
Probab=32.79 E-value=24 Score=33.26 Aligned_cols=21 Identities=19% Similarity=0.626 Sum_probs=14.8
Q ss_pred eeecCCCCccccee-eeeccCC
Q 044391 670 RLACAECGRTMEMF-FMYRCCP 690 (691)
Q Consensus 670 ~i~CpeC~R~ME~~-v~YkCCh 690 (691)
.|.||+|+++...- -.+.|-|
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~ 91 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMH 91 (110)
T ss_pred eeECCCCCchhhhccceeecCc
Confidence 46888888887776 5556644
No 209
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=32.78 E-value=53 Score=35.06 Aligned_cols=39 Identities=5% Similarity=-0.112 Sum_probs=33.5
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccC
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn 531 (691)
.||++++||-+ .|| +.+.+.+.++++..+ +++++|+-|.
T Consensus 165 ~~k~~Lv~F~A--swCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 165 AKKSGLFFFFK--SDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred cCCeEEEEEEC--CCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 68999999999 677 999999999987754 7899998874
No 210
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=32.53 E-value=1.1e+02 Score=34.15 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=98.9
Q ss_pred ChhhhHH-HH-HHHHhhcc--CCCCeeEEEEecccCCCCCChhh--HHHHHHHhcCCCeeeecCCCCCchHHHHHHHHhh
Q 044391 347 SDEEILV-LH-LYREHKAR--EEFDYAIVWLPIVDRSIAWDEGY--RQKFEQLQAMMPWYTVQHPTIIEPAVVKYAKEVW 420 (691)
Q Consensus 347 ~~~e~~~-L~-iY~~lk~~--~~~~fEIVwIpiVd~s~~W~D~d--~~~F~~~~~~MPWyAVp~~d~i~~~~~r~ike~f 420 (691)
|..++.. .. .|+=|..- ....|..+=||= |. ...|.. ...|.+--.=+| +=||+. .++....|-+-|
T Consensus 94 P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIST-DE--VYG~l~~~~~~FtE~tp~~P--sSPYSA--SKAasD~lVray 166 (340)
T COG1088 94 PAPFIQTNVVGTYTLLEAARKYWGKFRFHHIST-DE--VYGDLGLDDDAFTETTPYNP--SSPYSA--SKAASDLLVRAY 166 (340)
T ss_pred hhhhhhcchHHHHHHHHHHHHhcccceEEEecc-cc--ccccccCCCCCcccCCCCCC--CCCcch--hhhhHHHHHHHH
Confidence 4445532 44 66665421 123388888873 21 111111 125655433344 567776 567777777666
Q ss_pred Cc-CCceEEEEeCCCCceecccHHHHHHHhCcccccCChhhHHHHHhhhccchhhhcccCchhhhhhhcCCcEEEEEc-c
Q 044391 421 KF-SKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEKEAALWKAESWRLELLIDDIDATILEWMKEERYICLYG-G 498 (691)
Q Consensus 421 ~~-~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYg-G 498 (691)
.- =|+|.++.=.++ -||..-||= .| |-..|. -.-.||.+=||| |
T Consensus 167 ~~TYglp~~ItrcSN-------------NYGPyqfpE-----------------Kl---IP~~I~-nal~g~~lpvYGdG 212 (340)
T COG1088 167 VRTYGLPATITRCSN-------------NYGPYQFPE-----------------KL---IPLMII-NALLGKPLPVYGDG 212 (340)
T ss_pred HHHcCCceEEecCCC-------------CcCCCcCch-----------------hh---hHHHHH-HHHcCCCCceecCC
Confidence 65 488988764432 478777774 22 222332 133999999999 7
Q ss_pred CCh-hHH--HHHHHHHHHHHHHhCCceeeEEecccChH---HHHhhhhhhhhhccc
Q 044391 499 GDI-EWI--RRFTTSAKAVARAAQINLGMAYVGKNNAK---ERFRKISRIVIQENL 548 (691)
Q Consensus 499 ~D~-~Wi--r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~---e~v~~~~~~i~~e~l 548 (691)
.+. +|+ .+...++..|-.+ +..=|++-||.+|.+ |-|+.+++.+..++-
T Consensus 213 ~~iRDWl~VeDh~~ai~~Vl~k-g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~ 267 (340)
T COG1088 213 LQIRDWLYVEDHCRAIDLVLTK-GKIGETYNIGGGNERTNLEVVKTICELLGKDKP 267 (340)
T ss_pred cceeeeEEeHhHHHHHHHHHhc-CcCCceEEeCCCccchHHHHHHHHHHHhCcccc
Confidence 777 999 8888899888777 667999999998743 556666666665544
No 211
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.26 E-value=1.9e+02 Score=38.08 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhhhhcccCCcc---ccccccchHHHHHhhchhHHHHHHHHHHHHhhhhccccccccccccccchhhHHhh
Q 044391 179 LIKVMLDLTKCIVEFKQLPSQ---YISTDAQAMSTAMADTPAAAYWTFRSIVACHSQILSLAGLRDEYTASNTDAWELAS 255 (691)
Q Consensus 179 Lvk~m~dV~~cIie~~~L~~~---y~~~dvpal~~a~~~IP~~vYWtI~siVac~~qi~~l~~~~~e~~~s~~~~~eLS~ 255 (691)
++..|.++.+|++.+-.-|++ ++.+ .+-|+.|+-.--=++-++|+|.+-+.+=.+.|.+
T Consensus 1096 fl~~vi~Ile~VlPlv~~~sesfL~sLE-----e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~------------- 1157 (1692)
T KOG1020|consen 1096 FLYYVIQILECVLPLVANPSESFLASLE-----EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK------------- 1157 (1692)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH-------------
Confidence 999999999999999988886 3322 1345667766666788888887655432112221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccchhHHHHHHHhccCCCCCceecCCCC
Q 044391 256 LAHRVSRILEHFKKLIAICYQQIDENRQIEAYHNLVRLLETIHMDNMKVLRALIYAKDDIQPVVDGSSR 324 (691)
Q Consensus 256 l~~Kl~~i~~~L~~~l~~c~~~I~e~~~~e~y~~l~~lf~t~~~D~~~vLk~LI~~k~~~~~l~~g~~~ 324 (691)
++..+...+-++|+.-+.+-.+.-..-.++.+.+.+- .+..|...-+-..|..+|.+-
T Consensus 1158 ---~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsif--------tlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1158 ---VVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIF--------TLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred ---HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHH--------HHHHHHHhccCCCccCCCccc
Confidence 2333333333333333333222111223354444332 334566556666777777773
No 212
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=31.20 E-value=76 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=0.0
Q ss_pred EEEecCCCChhhh--HHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391 339 LLISSLDLSDEEI--LVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ 403 (691)
Q Consensus 339 L~fSal~~~~~e~--~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp 403 (691)
..|++.|||.|.- .+|. .+ ...+ |+++.|.. ++...+..+.+...-.+.++|
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~----~~~~~v~~-------~~~~~~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VKPA----YEVVELDQ-------LSNGSEIQDYLEEITGQRTVP 56 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CCCC----CEEEEeeC-------CCChHHHHHHHHHHhCCCCCC
No 213
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.16 E-value=74 Score=27.15 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=31.4
Q ss_pred CCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeeEEecccC
Q 044391 489 EERYICLYGGGDI-EWIRRFTTSAKAVARAAQ--INLGMAYVGKNN 531 (691)
Q Consensus 489 egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~--~~~E~v~Vgkdn 531 (691)
.+|.+++++.+++ ..||+|.+.+.++++..+ ..+.++.+.-++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 5678899998833 444899999999887744 467777776654
No 214
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.99 E-value=30 Score=30.31 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=16.7
Q ss_pred CCCceeecCCCCccccee-----eeeccCC
Q 044391 666 PIPERLACAECGRTMEMF-----FMYRCCP 690 (691)
Q Consensus 666 ~ip~~i~CpeC~R~ME~~-----v~YkCCh 690 (691)
+......||+|+.++|+- +.|-|=|
T Consensus 26 ~~~~~a~CPdC~~~Le~LkACGAvdYFC~~ 55 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVLKACGAVDYFCNH 55 (70)
T ss_dssp EEEEEEE-TTT-SB-EEEEETTEEEEE-TT
T ss_pred cceecccCCCcccHHHHHHHhcccceeecc
Confidence 567788999999999995 7887744
No 215
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=30.93 E-value=83 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=35.2
Q ss_pred hhhhcCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 484 LEWMKEERYICLYGGGDI-EWIRRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 484 ~~~i~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
.+-|++++.+.+||.+++ ..|+...+.+.++++.. ..+-++.|.-+..
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~ 64 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKA 64 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccC
Confidence 344667889999999843 34599999999998763 3467788877743
No 216
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=30.55 E-value=1e+02 Score=29.01 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred hhhhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 483 ILEWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 483 I~~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
..++++.|....+.|++++.|| +.+.+.+.++++..+..+..+.|.-+..
T Consensus 20 ~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 20 LDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred HHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 3466776555555566744445 9999999999988666677777777643
No 217
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=30.42 E-value=30 Score=40.40 Aligned_cols=26 Identities=31% Similarity=0.769 Sum_probs=20.0
Q ss_pred CCCCCceeecCCCCcccce--------eeeecc-C
Q 044391 664 HGPIPERLACAECGRTMEM--------FFMYRC-C 689 (691)
Q Consensus 664 ~g~ip~~i~CpeC~R~ME~--------~v~YkC-C 689 (691)
.+-.|=...||+|||.... .|.|+| |
T Consensus 162 ~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~c 196 (515)
T TIGR00467 162 ENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCEC 196 (515)
T ss_pred CCceeeeeecCCcCccCceEEEecCCceEEEEcCC
Confidence 5667888999999998732 377887 6
No 218
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=30.13 E-value=85 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEecccCh
Q 044391 489 EERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKNNA 532 (691)
Q Consensus 489 egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkdn~ 532 (691)
.||.+.|||.+ .|| ++..+.+.++.++. .+.++.|+.+++
T Consensus 73 ~gk~vvl~F~a--twCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~~ 115 (189)
T TIGR02661 73 PGRPTLLMFTA--PSCPVCDKLFPIIKSIARAE--ETDVVMISDGTP 115 (189)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHhc--CCcEEEEeCCCH
Confidence 78999999988 676 88888888876543 467888886644
No 219
>PRK07218 replication factor A; Provisional
Probab=29.20 E-value=22 Score=40.49 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=5.2
Q ss_pred ceeecceec
Q 044391 325 TRVNIEVLR 333 (691)
Q Consensus 325 ~kV~Is~L~ 333 (691)
..++|.+|.
T Consensus 57 ~~~kI~Di~ 65 (423)
T PRK07218 57 SSKDIKELS 65 (423)
T ss_pred CCccHhhCC
Confidence 345666665
No 220
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=28.85 E-value=42 Score=28.62 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=20.3
Q ss_pred CCCCceeecCCCCcccceeeeec
Q 044391 665 GPIPERLACAECGRTMEMFFMYR 687 (691)
Q Consensus 665 g~ip~~i~CpeC~R~ME~~v~Yk 687 (691)
|+-|..+.||.|+...+..|.|+
T Consensus 2 ~~~p~~~~CP~C~~~~~T~v~~~ 24 (73)
T PF10601_consen 2 GPEPVRIYCPYCQQQVQTRVEYK 24 (73)
T ss_pred CCCceeeECCCCCCEEEEEEEEE
Confidence 67799999999999998888775
No 221
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.93 E-value=29 Score=33.28 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=10.8
Q ss_pred CCceeecCCCCccc
Q 044391 667 IPERLACAECGRTM 680 (691)
Q Consensus 667 ip~~i~CpeC~R~M 680 (691)
+-....||||||.-
T Consensus 95 ~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 95 IEGELVCPETGRVF 108 (124)
T ss_pred ccceEecCCCCcEe
Confidence 56678899999863
No 222
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.87 E-value=26 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=13.1
Q ss_pred ceeecCCCCccccee-eeeccCC
Q 044391 669 ERLACAECGRTMEMF-FMYRCCP 690 (691)
Q Consensus 669 ~~i~CpeC~R~ME~~-v~YkCCh 690 (691)
-.|.||+|+|+-... =...|-|
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~ 90 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMH 90 (114)
T ss_pred eeeECCCCCChHhhhchhhccCc
Confidence 356688888776555 3345543
No 223
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=27.76 E-value=1.2e+02 Score=28.24 Aligned_cols=42 Identities=7% Similarity=-0.035 Sum_probs=33.2
Q ss_pred hcCCcEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDIEWI---RRFTTSAKAVARAAQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a~~~~E~v~Vgkd 530 (691)
+++++.+++.|-+ .|| |.+.+.+.++++..+..+.+.-|--+
T Consensus 26 ~~~~~~vlV~FyA--~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d 70 (113)
T cd03006 26 RTDAEVSLVMYYA--PWDAQSQAARQEFEQVAQKLSDQVLFVAINCW 70 (113)
T ss_pred ccCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 4688999999999 777 89999999998875555666666544
No 224
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.75 E-value=26 Score=24.60 Aligned_cols=12 Identities=25% Similarity=1.005 Sum_probs=6.8
Q ss_pred eeecCCCCcccc
Q 044391 670 RLACAECGRTME 681 (691)
Q Consensus 670 ~i~CpeC~R~ME 681 (691)
++.||+||.+.+
T Consensus 2 ~~~Cp~Cg~~~~ 13 (26)
T PF13248_consen 2 EMFCPNCGAEID 13 (26)
T ss_pred cCCCcccCCcCC
Confidence 355666666443
No 225
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.91 E-value=51 Score=30.89 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=25.1
Q ss_pred HHHHhhhccCCCCCCcc--cccCCCCCCCCceeecCCCCccccee-eeecc
Q 044391 641 GLNNYLQRVHTPRHCNR--LILPDIHGPIPERLACAECGRTMEMF-FMYRC 688 (691)
Q Consensus 641 Af~~y~~~~~~~~~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-v~YkC 688 (691)
+|+.+|+.+.....|.. +++ -.+|.+..|++||+..+.- ..+.|
T Consensus 43 ~L~faf~~~~~~t~~ega~L~I----~~~p~~~~C~~Cg~~~~~~~~~~~C 89 (115)
T TIGR00100 43 QLQFAFEVVREGTVAEGAKLNI----EDEPVECECEDCSEEVSPEIDLYRC 89 (115)
T ss_pred HHHHHHHHHhCCCccCCCEEEE----EeeCcEEEcccCCCEEecCCcCccC
Confidence 45555555444334533 333 2567778888888776664 34445
No 226
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=26.59 E-value=39 Score=39.27 Aligned_cols=27 Identities=26% Similarity=0.643 Sum_probs=21.4
Q ss_pred CCCCCceeecCCCCccccee----------eeecc-CC
Q 044391 664 HGPIPERLACAECGRTMEMF----------FMYRC-CP 690 (691)
Q Consensus 664 ~g~ip~~i~CpeC~R~ME~~----------v~YkC-Ch 690 (691)
.+.+|=...||+|||...+- |.|.| |.
T Consensus 169 ~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG 206 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECG 206 (510)
T ss_pred CCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCC
Confidence 67789999999999998643 57777 54
No 227
>PF14369 zf-RING_3: zinc-finger
Probab=26.19 E-value=45 Score=25.24 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=14.2
Q ss_pred CCCcccccCCCCCCCCceeecCCCCc
Q 044391 653 RHCNRLILPDIHGPIPERLACAECGR 678 (691)
Q Consensus 653 ~~C~~~~~p~~~g~ip~~i~CpeC~R 678 (691)
|.|++.+-+...+ .+.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~--~~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSP--DSDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCC--CCCcCCcCCCC
Confidence 6788865543221 12247999973
No 228
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.05 E-value=27 Score=28.21 Aligned_cols=10 Identities=40% Similarity=1.262 Sum_probs=5.2
Q ss_pred ecCCCCcccc
Q 044391 672 ACAECGRTME 681 (691)
Q Consensus 672 ~CpeC~R~ME 681 (691)
.||-|||++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6899999985
No 229
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=25.82 E-value=28 Score=29.01 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=7.7
Q ss_pred CceeecCCCCcccce
Q 044391 668 PERLACAECGRTMEM 682 (691)
Q Consensus 668 p~~i~CpeC~R~ME~ 682 (691)
-..-+||+|++++..
T Consensus 22 ~~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 22 EQPATCPICGAVIRQ 36 (54)
T ss_dssp S--EE-TTT--EESS
T ss_pred CCCCCCCcchhhccc
Confidence 345689999998764
No 230
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=25.50 E-value=30 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=9.7
Q ss_pred eecCCCCcccce
Q 044391 671 LACAECGRTMEM 682 (691)
Q Consensus 671 i~CpeC~R~ME~ 682 (691)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 479999988854
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.45 E-value=1.3e+02 Score=33.07 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred cceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCC
Q 044391 329 IEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHP 405 (691)
Q Consensus 329 Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~ 405 (691)
+..-+.+-|+.+|=+.||++| -+++|. +=.+-+.+ |+.+=|=+
T Consensus 38 ~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----f~LakvN~------------------------------ 83 (304)
T COG3118 38 IQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----FKLAKVNC------------------------------ 83 (304)
T ss_pred HHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----eEEEEecC------------------------------
Q ss_pred CCCchHHHHHHHHhhCcCCceEEEEe
Q 044391 406 TIIEPAVVKYAKEVWKFSKKAILVPV 431 (691)
Q Consensus 406 d~i~~~~~r~ike~f~~~~iP~LVvL 431 (691)
....-|.-.|+++.||+++++
T Consensus 84 -----D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 84 -----DAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred -----CcchhHHHHhCcCcCCeEEEe
No 232
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=25.17 E-value=1.3e+02 Score=32.19 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=56.2
Q ss_pred eecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeec
Q 044391 327 VNIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQ 403 (691)
Q Consensus 327 V~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp 403 (691)
--|..|.+++=++||-..+|+-| +.++|. .=++ -.++|+-||+ |. .--..|.+. .
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~------ygi~v~~VS~-DG------~~~p~fp~~---~------ 200 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKE------YGISVIPISV-DG------TLIPGLPNS---R------ 200 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHH------hCCeEEEEec-CC------CCCCCCCCc---c------
Confidence 35667788888999999999766 446777 4333 2399999997 31 100112110 0
Q ss_pred CCCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHH
Q 044391 404 HPTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFH 444 (691)
Q Consensus 404 ~~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~ 444 (691)
+| .-+.+.|+++.-|.|++++|+++...+=|.+
T Consensus 201 -~d-------~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 201 -SD-------SGQAQHLGVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred -CC-------hHHHHhcCCccCceEEEEECCCCcEEEEeec
Confidence 11 2235668999999999999997655544443
No 233
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.07 E-value=33 Score=26.28 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=10.8
Q ss_pred ecCCCCccccee
Q 044391 672 ACAECGRTMEMF 683 (691)
Q Consensus 672 ~CpeC~R~ME~~ 683 (691)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999986
No 234
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=24.63 E-value=95 Score=27.75 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=31.4
Q ss_pred cCCcEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeeEEeccc
Q 044391 488 KEERYICLYGGGDI-EWIRRFTTSAKAVARAAQ-INLGMAYVGKN 530 (691)
Q Consensus 488 ~egK~I~LYgG~D~-~Wir~FT~~~~~Ik~~a~-~~~E~v~Vgkd 530 (691)
+.||.+++.|.+++ ..|+++.+.+.++++..+ ..+.+..|--+
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 46899999999833 335999999999887644 34777776655
No 235
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.04 E-value=53 Score=25.69 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q 044391 670 RLACAECGRTME 681 (691)
Q Consensus 670 ~i~CpeC~R~ME 681 (691)
.+.||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 689999998765
No 236
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=70 Score=37.34 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=47.1
Q ss_pred hHHHHHHHhccCCC----CCceecCCCCceeec---------ceecCcEEEEEEecCCCChhhhHHHH-HHHHhhccCCC
Q 044391 301 NMKVLRALIYAKDD----IQPVVDGSSRTRVNI---------EVLRRKHVLLLISSLDLSDEEILVLH-LYREHKAREEF 366 (691)
Q Consensus 301 ~~~vLk~LI~~k~~----~~~l~~g~~~~kV~I---------s~L~gK~VlL~fSal~~~~~e~~~L~-iY~~lk~~~~~ 366 (691)
+..+.+.+...+=. .||+-...++..|.+ --=.+|+||+=|=+.||.+|. -|. +|++|-++...
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk--~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCK--ALAPIYEELAEKYKD 415 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhh--hhhhHHHHHHHHhcC
Confidence 44455555543333 356555555332321 112489999999999998863 477 89998776566
Q ss_pred CeeEEEEec
Q 044391 367 DYAIVWLPI 375 (691)
Q Consensus 367 ~fEIVwIpi 375 (691)
+=+|||-=|
T Consensus 416 ~~~vviAKm 424 (493)
T KOG0190|consen 416 DENVVIAKM 424 (493)
T ss_pred CCCcEEEEe
Confidence 668999876
No 237
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.94 E-value=36 Score=27.14 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=10.5
Q ss_pred CCceeecCCCCcccc
Q 044391 667 IPERLACAECGRTME 681 (691)
Q Consensus 667 ip~~i~CpeC~R~ME 681 (691)
+|. -.||-|||||.
T Consensus 6 lp~-K~C~~C~rpf~ 19 (42)
T PF10013_consen 6 LPS-KICPVCGRPFT 19 (42)
T ss_pred CCC-CcCcccCCcch
Confidence 344 46999999984
No 238
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=22.71 E-value=2.5e+02 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred EEEEEccCChhHHHHHHHHHHHHHHHhCCceeeEEecccChHHHH
Q 044391 492 YICLYGGGDIEWIRRFTTSAKAVARAAQINLGMAYVGKNNAKERF 536 (691)
Q Consensus 492 ~I~LYgG~D~~Wir~FT~~~~~Ik~~a~~~~E~v~Vgkdn~~e~v 536 (691)
.|-+|.+.+-..|+...+.+.++++..+..++++.|.-+...+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~ 46 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA 46 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH
Confidence 356777765566799999999987776667888888776544433
No 239
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=22.71 E-value=1.7e+02 Score=31.31 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=55.8
Q ss_pred ecceecCcEEEEEEecCCCChh--hhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecC
Q 044391 328 NIEVLRRKHVLLLISSLDLSDE--EILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQH 404 (691)
Q Consensus 328 ~Is~L~gK~VlL~fSal~~~~~--e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~ 404 (691)
-|..|.+++=++||-..+|+-| +.++|. .=++- .++|+-||+ | .. ..| . |
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------g~~v~~VS~-D-------G~---------~~p--~--f 189 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------GLSVIPVSV-D-------GV---------INP--L--L 189 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------CCeEEEEec-C-------CC---------CCC--C--C
Confidence 3567778888999999999766 457787 44432 389999997 3 21 112 1 2
Q ss_pred CCCCchHHHHHHHHhhCcCCceEEEEeCCCCceecccHHH
Q 044391 405 PTIIEPAVVKYAKEVWKFSKKAILVPVDPQGRILNQNAFH 444 (691)
Q Consensus 405 ~d~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~ 444 (691)
|+...-.+ ..+.++++.-|.|++++|+++..-+=|.+
T Consensus 190 p~~~~d~g---qa~~l~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 190 PDSRTDQG---QAQRLGVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred CCCccChh---HHHhcCCcccceEEEEECCCCcEEEEeec
Confidence 22111112 22678999999999999987655544443
No 240
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.66 E-value=32 Score=36.54 Aligned_cols=8 Identities=50% Similarity=1.306 Sum_probs=3.4
Q ss_pred eecCCCCc
Q 044391 671 LACAECGR 678 (691)
Q Consensus 671 i~CpeC~R 678 (691)
|.||+|||
T Consensus 222 v~CP~CgR 229 (239)
T COG1579 222 VFCPYCGR 229 (239)
T ss_pred ccCCccch
Confidence 33444444
No 241
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.57 E-value=2.5e+02 Score=26.64 Aligned_cols=76 Identities=12% Similarity=0.267 Sum_probs=58.5
Q ss_pred hhhHHHHHHHhcCCCeeeecCCCCCchH---HHHHHHHhhCcCCceEEEEeCCCCceecccHHHHHHHhCcccccCChhh
Q 044391 384 EGYRQKFEQLQAMMPWYTVQHPTIIEPA---VVKYAKEVWKFSKKAILVPVDPQGRILNQNAFHMLWIWGNLAFPFSAEK 460 (691)
Q Consensus 384 D~d~~~F~~~~~~MPWyAVp~~d~i~~~---~~r~ike~f~~~~iP~LVvL~pqGkv~~~NA~~mI~~wG~~AFPFT~~r 460 (691)
|++-+.........|=.+|.||...|.. ..+.|+|+++|+|. |-. -|.|+ .|=+.++..=|.++|-.+..+
T Consensus 7 d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge--lRA---~Gdvl-~DQl~~l~R~GFdsf~l~~~~ 80 (110)
T PF06073_consen 7 DDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE--LRA---VGDVL-RDQLFYLRRCGFDSFELREDQ 80 (110)
T ss_pred CCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc--EEE---eccch-HHHHHHHHHcCCCEEEeCCCC
Confidence 7777888888999999999999877665 46789999999998 444 35555 556667899999999998744
Q ss_pred HHHHH
Q 044391 461 EAALW 465 (691)
Q Consensus 461 ~e~L~ 465 (691)
--+.|
T Consensus 81 ~~~~~ 85 (110)
T PF06073_consen 81 DPEDA 85 (110)
T ss_pred CHHHH
Confidence 43333
No 242
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.2e+02 Score=29.40 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=27.3
Q ss_pred hcCCcEEEEEccCCh------hHHHHHHHHH---HH-HHHH-hCCceeeEEeccc
Q 044391 487 MKEERYICLYGGGDI------EWIRRFTTSA---KA-VARA-AQINLGMAYVGKN 530 (691)
Q Consensus 487 i~egK~I~LYgG~D~------~Wir~FT~~~---~~-Ik~~-a~~~~E~v~Vgkd 530 (691)
+..||+|++||-++. -||=+--.|. .+ ++.+ .+..|=.+|||..
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 557888998883332 7994433332 22 2222 3678888999987
No 243
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.05 E-value=39 Score=42.46 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.5
Q ss_pred eeecCCCCcccceeeeeccCCC
Q 044391 670 RLACAECGRTMEMFFMYRCCPE 691 (691)
Q Consensus 670 ~i~CpeC~R~ME~~v~YkCCh~ 691 (691)
..+||+|+||.|-.-.|-||-+
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (1006)
T PRK12775 796 VATCPKCHRPLEGDEEYVCCAT 817 (1006)
T ss_pred CccCcccCCCCCCCceeEEecC
Confidence 3589999999999999999964
No 244
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=21.97 E-value=1.2e+02 Score=30.49 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred cCcEEEEEEecCCC--Ch---hhhHHHH-HHHHhhccCCCCeeEEEEecccCCCCCChhhHHHHHHHhcCCCeeeecCCC
Q 044391 333 RRKHVLLLISSLDL--SD---EEILVLH-LYREHKAREEFDYAIVWLPIVDRSIAWDEGYRQKFEQLQAMMPWYTVQHPT 406 (691)
Q Consensus 333 ~gK~VlL~fSal~~--~~---~e~~~L~-iY~~lk~~~~~~fEIVwIpiVd~s~~W~D~d~~~F~~~~~~MPWyAVp~~d 406 (691)
++|-|+|.|...|| |. .+.+-=. |=+-|.+. ||||
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~--------FI~V------------------------------- 76 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN--------FIPV------------------------------- 76 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH---------EEE-------------------------------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC--------EEEE-------------------------------
Q ss_pred CCchHHHHHHHHhh--------CcCCceEEEEeCCCCcee
Q 044391 407 IIEPAVVKYAKEVW--------KFSKKAILVPVDPQGRIL 438 (691)
Q Consensus 407 ~i~~~~~r~ike~f--------~~~~iP~LVvL~pqGkv~ 438 (691)
++|.+-.-.|...+ +..|=|+-|+|+|+|+.+
T Consensus 77 kvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 77 KVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
No 245
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.77 E-value=2.9e+02 Score=25.13 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=36.2
Q ss_pred hhhcCCcEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeeEEecccChHHHHhhhhhhhhhccccc
Q 044391 485 EWMKEERYICLYGGGDIEWI---RRFTTSAKAVARAA-QINLGMAYVGKNNAKERFRKISRIVIQENLSH 550 (691)
Q Consensus 485 ~~i~egK~I~LYgG~D~~Wi---r~FT~~~~~Ik~~a-~~~~E~v~Vgkdn~~e~v~~~~~~i~~e~ls~ 550 (691)
+....++.+.+++.+ .|| +.-.+.+.++.++. +..++++-|+.+++. ..+ +......+++
T Consensus 19 ~~~~~~~~vl~f~~~--~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~-~~~---~~~~~~~~~~ 82 (149)
T cd02970 19 ALLGEGPVVVVFYRG--FGCPFCREYLRALSKLLPELDALGVELVAVGPESPE-KLE---AFDKGKFLPF 82 (149)
T ss_pred HHhcCCCEEEEEECC--CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH-HHH---HHHHhcCCCC
Confidence 333345677777655 466 66677777765553 457999999988653 332 3344444544
No 246
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.43 E-value=34 Score=28.85 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=8.1
Q ss_pred ceeecCCCCcccce
Q 044391 669 ERLACAECGRTMEM 682 (691)
Q Consensus 669 ~~i~CpeC~R~ME~ 682 (691)
.++.||.||++-+.
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999999887
No 247
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=20.21 E-value=69 Score=26.92 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.4
Q ss_pred CceeecCCCCcccceeeeec
Q 044391 668 PERLACAECGRTMEMFFMYR 687 (691)
Q Consensus 668 p~~i~CpeC~R~ME~~v~Yk 687 (691)
|..+.||.|+..+..-|.|+
T Consensus 1 p~~i~Cp~C~~~~~T~v~~~ 20 (67)
T smart00714 1 PYQLFCPRCQNNVTTRVETE 20 (67)
T ss_pred CcceECCCCCCEEEEEEEEE
Confidence 67899999999999888775
Done!