Query 044393
Match_columns 513
No_of_seqs 381 out of 3749
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-66 4.6E-71 554.8 38.9 485 5-513 6-530 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.3E-43 9.3E-48 339.8 19.2 269 158-434 1-283 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.4E-37 5.1E-42 348.5 26.2 303 150-484 181-505 (1153)
4 PRK04841 transcriptional regul 99.6 3.4E-14 7.3E-19 159.6 23.1 291 149-482 10-333 (903)
5 COG2909 MalT ATP-dependent tra 99.4 1.9E-11 4.1E-16 126.5 22.8 290 152-483 18-340 (894)
6 TIGR03015 pepcterm_ATPase puta 99.4 2E-10 4.3E-15 110.0 26.2 192 157-353 27-242 (269)
7 PRK00411 cdc6 cell division co 99.3 3.7E-10 8E-15 114.5 24.4 287 153-461 30-358 (394)
8 PF01637 Arch_ATPase: Archaeal 99.3 9.3E-12 2E-16 116.5 11.3 190 155-348 1-233 (234)
9 TIGR00635 ruvB Holliday juncti 99.2 1.1E-09 2.4E-14 106.9 20.9 271 152-462 3-290 (305)
10 TIGR02928 orc1/cdc6 family rep 99.2 5.5E-09 1.2E-13 104.7 25.7 286 154-461 16-350 (365)
11 PRK00080 ruvB Holliday junctio 99.2 4.5E-10 9.9E-15 110.4 16.6 275 148-462 20-311 (328)
12 PF05729 NACHT: NACHT domain 99.2 2.9E-10 6.2E-15 100.3 12.8 138 175-319 1-163 (166)
13 COG2256 MGS1 ATPase related to 99.1 1E-09 2.2E-14 104.8 12.9 177 146-347 17-210 (436)
14 COG0488 Uup ATPase components 99.0 4.3E-10 9.2E-15 115.3 8.3 146 155-305 331-511 (530)
15 COG3899 Predicted ATPase [Gene 99.0 1E-08 2.2E-13 112.0 17.7 302 155-482 2-387 (849)
16 PRK13342 recombination factor 99.0 4.9E-09 1.1E-13 106.3 13.9 180 148-352 7-199 (413)
17 PRK06893 DNA replication initi 98.9 2.6E-08 5.6E-13 92.5 14.0 148 174-351 39-205 (229)
18 TIGR03420 DnaA_homol_Hda DnaA 98.8 6E-08 1.3E-12 90.3 13.5 165 157-351 21-203 (226)
19 PRK14949 DNA polymerase III su 98.8 2.2E-07 4.7E-12 99.0 16.6 194 148-349 11-220 (944)
20 PRK04195 replication factor C 98.8 3.9E-07 8.5E-12 94.3 18.1 182 149-353 10-206 (482)
21 PRK07003 DNA polymerase III su 98.8 2.3E-07 4.9E-12 97.1 15.9 194 148-349 11-221 (830)
22 KOG2028 ATPase related to the 98.7 6.8E-08 1.5E-12 90.9 10.4 177 147-344 132-331 (554)
23 PRK12402 replication factor C 98.7 3.5E-07 7.6E-12 90.7 16.1 199 149-348 11-225 (337)
24 PRK12323 DNA polymerase III su 98.7 3.5E-07 7.5E-12 94.4 16.1 198 148-348 11-224 (700)
25 PRK14961 DNA polymerase III su 98.7 6.6E-07 1.4E-11 89.1 17.8 191 149-347 12-218 (363)
26 PLN03025 replication factor C 98.7 5E-07 1.1E-11 88.5 16.6 181 148-346 8-197 (319)
27 PRK14963 DNA polymerase III su 98.7 6.4E-07 1.4E-11 92.2 17.2 195 148-346 9-214 (504)
28 PRK00440 rfc replication facto 98.7 8.2E-07 1.8E-11 87.3 17.1 179 149-347 13-201 (319)
29 PRK14960 DNA polymerase III su 98.7 5.8E-07 1.3E-11 93.0 16.3 192 148-347 10-217 (702)
30 PF05496 RuvB_N: Holliday junc 98.7 2.3E-07 5E-12 83.1 11.7 178 146-354 17-226 (233)
31 PRK08084 DNA replication initi 98.7 8.5E-07 1.8E-11 82.7 15.3 163 158-350 29-210 (235)
32 PRK07471 DNA polymerase III su 98.6 1.7E-06 3.7E-11 85.5 18.0 197 147-350 13-239 (365)
33 PTZ00112 origin recognition co 98.6 4.9E-06 1.1E-10 87.9 21.9 164 154-320 756-950 (1164)
34 PTZ00202 tuzin; Provisional 98.6 1.2E-06 2.6E-11 85.7 16.3 164 146-319 255-434 (550)
35 PRK05564 DNA polymerase III su 98.6 1.5E-06 3.3E-11 84.9 17.2 171 153-347 4-188 (313)
36 COG1474 CDC6 Cdc6-related prot 98.6 4.8E-06 1E-10 82.2 20.3 278 155-460 19-333 (366)
37 PRK09112 DNA polymerase III su 98.6 2.1E-06 4.6E-11 84.3 17.8 197 147-350 17-241 (351)
38 cd01128 rho_factor Transcripti 98.6 1.7E-07 3.6E-12 87.4 9.5 92 173-267 15-115 (249)
39 PRK07994 DNA polymerase III su 98.6 9.8E-07 2.1E-11 92.5 15.8 194 148-349 11-220 (647)
40 PRK08727 hypothetical protein; 98.6 1.2E-06 2.6E-11 81.5 14.8 165 152-346 18-201 (233)
41 COG3903 Predicted ATPase [Gene 98.6 9.4E-08 2E-12 92.2 7.4 285 175-482 15-315 (414)
42 PRK14957 DNA polymerase III su 98.6 1.8E-06 3.9E-11 89.1 16.8 182 148-349 11-221 (546)
43 PF13401 AAA_22: AAA domain; P 98.6 2E-07 4.3E-12 78.6 8.2 112 175-288 5-125 (131)
44 PRK08691 DNA polymerase III su 98.6 1.2E-06 2.7E-11 91.4 15.5 192 148-347 11-218 (709)
45 PRK14956 DNA polymerase III su 98.6 7.4E-07 1.6E-11 89.6 13.4 190 148-345 13-218 (484)
46 PF14516 AAA_35: AAA-like doma 98.6 9.6E-06 2.1E-10 79.6 20.8 198 150-356 8-246 (331)
47 PRK14962 DNA polymerase III su 98.6 2.5E-06 5.4E-11 87.1 17.1 185 148-352 9-222 (472)
48 PRK14958 DNA polymerase III su 98.6 1.7E-06 3.6E-11 89.4 15.7 179 148-347 11-218 (509)
49 COG0488 Uup ATPase components 98.6 1.4E-07 3E-12 97.0 7.7 141 157-304 14-224 (530)
50 PRK07940 DNA polymerase III su 98.5 2.8E-06 6E-11 84.7 16.0 172 152-349 4-213 (394)
51 PRK14951 DNA polymerase III su 98.5 2.7E-06 5.9E-11 89.0 16.4 195 149-348 12-224 (618)
52 PRK14964 DNA polymerase III su 98.5 2.8E-06 6E-11 86.5 16.0 179 148-346 8-214 (491)
53 PRK09087 hypothetical protein; 98.5 1.5E-06 3.3E-11 80.2 12.9 139 174-351 44-197 (226)
54 PRK06645 DNA polymerase III su 98.5 4.3E-06 9.3E-11 85.8 17.2 194 148-346 16-226 (507)
55 PRK13341 recombination factor 98.5 1.2E-06 2.7E-11 93.6 13.8 174 148-345 23-213 (725)
56 TIGR02397 dnaX_nterm DNA polym 98.5 6.3E-06 1.4E-10 82.3 18.2 181 149-350 10-219 (355)
57 cd00009 AAA The AAA+ (ATPases 98.5 8.9E-07 1.9E-11 75.9 10.4 117 157-289 2-130 (151)
58 COG1120 FepC ABC-type cobalami 98.5 1.5E-07 3.2E-12 86.9 5.7 135 157-296 13-206 (258)
59 PRK09376 rho transcription ter 98.5 4.6E-07 1E-11 88.1 9.3 93 172-267 167-268 (416)
60 PRK14969 DNA polymerase III su 98.5 4.6E-06 1E-10 86.7 16.9 175 149-344 12-215 (527)
61 PF13173 AAA_14: AAA domain 98.5 4.6E-07 1E-11 76.0 7.1 115 175-311 3-127 (128)
62 PF13191 AAA_16: AAA ATPase do 98.4 1.6E-06 3.5E-11 77.8 10.9 51 154-204 1-54 (185)
63 PRK14955 DNA polymerase III su 98.4 4.4E-06 9.5E-11 84.2 14.9 199 148-347 11-226 (397)
64 PRK05896 DNA polymerase III su 98.4 4.7E-06 1E-10 86.2 15.1 194 148-350 11-222 (605)
65 PF05621 TniB: Bacterial TniB 98.4 1.5E-05 3.2E-10 75.0 16.9 187 159-350 43-262 (302)
66 KOG0927 Predicted transporter 98.4 1.4E-06 3.1E-11 86.5 10.2 137 154-294 398-571 (614)
67 PRK07764 DNA polymerase III su 98.4 7.8E-06 1.7E-10 88.7 16.0 190 148-345 10-217 (824)
68 PRK14959 DNA polymerase III su 98.4 1.1E-05 2.3E-10 84.1 16.3 197 148-353 11-225 (624)
69 PF00308 Bac_DnaA: Bacterial d 98.4 1.1E-05 2.3E-10 74.3 14.7 156 175-349 35-208 (219)
70 PRK08903 DnaA regulatory inact 98.4 6.6E-06 1.4E-10 76.5 13.5 160 160-353 27-203 (227)
71 COG1126 GlnQ ABC-type polar am 98.4 1E-06 2.2E-11 77.7 7.3 135 154-296 10-203 (240)
72 TIGR00678 holB DNA polymerase 98.4 1.4E-05 3.1E-10 71.9 15.0 156 164-345 3-187 (188)
73 COG4618 ArpD ABC-type protease 98.4 2.7E-05 6E-10 77.1 17.6 40 159-200 349-388 (580)
74 KOG0066 eIF2-interacting prote 98.4 6.6E-07 1.4E-11 86.3 6.2 143 151-297 592-769 (807)
75 PRK09111 DNA polymerase III su 98.4 1.2E-05 2.7E-10 84.3 16.1 197 148-349 19-233 (598)
76 PRK14970 DNA polymerase III su 98.3 1.7E-05 3.7E-10 79.5 16.4 179 148-346 12-206 (367)
77 TIGR00767 rho transcription te 98.3 2.7E-06 5.9E-11 83.3 10.2 91 174-267 168-267 (415)
78 PRK14087 dnaA chromosomal repl 98.3 6.8E-06 1.5E-10 83.8 13.5 162 175-352 142-322 (450)
79 PRK14954 DNA polymerase III su 98.3 1.8E-05 3.9E-10 83.2 16.7 196 148-344 11-223 (620)
80 PRK14952 DNA polymerase III su 98.3 1.9E-05 4.1E-10 82.5 16.7 194 148-349 8-220 (584)
81 TIGR03345 VI_ClpV1 type VI sec 98.3 1.3E-05 2.8E-10 88.0 16.2 181 149-343 183-390 (852)
82 PRK14953 DNA polymerase III su 98.3 2.5E-05 5.5E-10 80.3 17.1 181 148-350 11-221 (486)
83 PRK10636 putative ABC transpor 98.3 1.2E-06 2.5E-11 93.9 7.6 133 157-295 323-493 (638)
84 PRK14950 DNA polymerase III su 98.3 3.3E-05 7.2E-10 81.8 17.8 195 148-349 11-221 (585)
85 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.4E-06 3E-11 80.1 6.4 39 160-200 18-56 (254)
86 PRK05642 DNA replication initi 98.3 2.2E-05 4.8E-10 73.1 13.9 146 175-350 46-209 (234)
87 TIGR01242 26Sp45 26S proteasom 98.2 1E-05 2.2E-10 80.8 12.2 168 152-344 121-329 (364)
88 PRK08451 DNA polymerase III su 98.2 7.1E-05 1.5E-09 77.1 18.2 193 149-349 10-218 (535)
89 PRK06305 DNA polymerase III su 98.2 5.3E-05 1.1E-09 77.4 17.3 182 149-349 13-223 (451)
90 COG1131 CcmA ABC-type multidru 98.2 1.8E-06 4E-11 83.0 6.2 138 155-295 13-203 (293)
91 PRK07133 DNA polymerase III su 98.2 3.6E-05 7.9E-10 81.5 16.1 189 148-346 13-216 (725)
92 COG2255 RuvB Holliday junction 98.2 2.6E-05 5.5E-10 71.7 13.0 178 146-354 19-228 (332)
93 COG1124 DppF ABC-type dipeptid 98.2 1.1E-06 2.5E-11 79.0 4.2 38 161-200 22-59 (252)
94 cd03222 ABC_RNaseL_inhibitor T 98.2 5.3E-06 1.2E-10 73.3 8.3 108 175-304 26-146 (177)
95 cd03223 ABCD_peroxisomal_ALDP 98.2 7.3E-06 1.6E-10 72.1 9.1 131 163-303 18-160 (166)
96 cd03238 ABC_UvrA The excision 98.2 8.4E-06 1.8E-10 72.0 9.1 122 167-303 16-161 (176)
97 PRK14971 DNA polymerase III su 98.2 6.1E-05 1.3E-09 79.7 17.1 176 149-346 13-219 (614)
98 TIGR02903 spore_lon_C ATP-depe 98.2 2.6E-05 5.7E-10 82.7 14.4 53 149-201 150-202 (615)
99 PRK14948 DNA polymerase III su 98.2 9.3E-05 2E-09 78.3 18.0 196 148-349 11-222 (620)
100 COG0396 sufC Cysteine desulfur 98.2 8.7E-06 1.9E-10 72.6 8.3 47 255-301 162-216 (251)
101 COG4133 CcmA ABC-type transpor 98.1 4.2E-06 9E-11 72.2 5.9 39 161-201 17-55 (209)
102 PHA02544 44 clamp loader, smal 98.1 4.5E-05 9.8E-10 74.8 13.9 146 148-317 16-171 (316)
103 COG2274 SunT ABC-type bacterio 98.1 0.00011 2.5E-09 78.5 17.7 39 160-200 487-525 (709)
104 PRK11331 5-methylcytosine-spec 98.1 1.8E-05 3.8E-10 78.9 10.8 109 154-267 176-284 (459)
105 PRK14088 dnaA chromosomal repl 98.1 5.5E-05 1.2E-09 77.2 14.7 156 174-347 130-303 (440)
106 KOG0989 Replication factor C, 98.1 1.4E-05 2.9E-10 74.3 9.0 185 148-344 31-225 (346)
107 PRK03992 proteasome-activating 98.1 5.3E-05 1.2E-09 76.1 14.0 167 153-343 131-337 (389)
108 PRK14965 DNA polymerase III su 98.1 6.6E-05 1.4E-09 79.1 14.9 194 148-349 11-221 (576)
109 COG1116 TauB ABC-type nitrate/ 98.1 6.7E-06 1.5E-10 74.7 6.4 40 159-200 16-55 (248)
110 TIGR02881 spore_V_K stage V sp 98.1 3E-05 6.6E-10 73.6 11.2 129 174-320 42-192 (261)
111 TIGR02639 ClpA ATP-dependent C 98.1 6E-05 1.3E-09 82.1 14.8 156 149-319 178-358 (731)
112 cd03247 ABCC_cytochrome_bd The 98.1 2.1E-05 4.4E-10 70.1 9.2 123 169-303 25-169 (178)
113 COG2884 FtsE Predicted ATPase 98.1 1.7E-05 3.7E-10 68.5 8.2 41 159-201 15-55 (223)
114 PRK05707 DNA polymerase III su 98.1 0.00021 4.5E-09 69.8 16.6 152 174-349 22-203 (328)
115 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.8E-05 3.8E-10 67.8 8.1 93 175-295 27-133 (144)
116 TIGR00362 DnaA chromosomal rep 98.1 8.7E-05 1.9E-09 75.3 14.6 154 175-347 137-308 (405)
117 cd03246 ABCC_Protease_Secretio 98.1 1.4E-05 3.1E-10 70.8 7.8 120 169-303 25-168 (173)
118 cd03216 ABC_Carb_Monos_I This 98.0 8E-06 1.7E-10 71.6 6.0 115 168-294 22-147 (163)
119 PRK05563 DNA polymerase III su 98.0 0.00018 4E-09 75.5 17.1 191 148-346 11-217 (559)
120 KOG2543 Origin recognition com 98.0 0.00013 2.9E-09 69.8 14.3 194 154-353 7-230 (438)
121 PRK06620 hypothetical protein; 98.0 4.4E-05 9.5E-10 69.9 10.9 130 175-346 45-186 (214)
122 COG1117 PstB ABC-type phosphat 98.0 2.8E-05 6E-10 68.6 8.7 47 150-198 11-57 (253)
123 PRK00149 dnaA chromosomal repl 98.0 7.7E-05 1.7E-09 76.7 13.7 154 175-347 149-320 (450)
124 COG4555 NatA ABC-type Na+ tran 98.0 9.9E-06 2.2E-10 70.6 5.9 40 160-201 16-55 (245)
125 PRK06647 DNA polymerase III su 98.0 0.00014 3.1E-09 76.0 15.7 192 148-347 11-218 (563)
126 COG1136 SalX ABC-type antimicr 98.0 2.2E-05 4.9E-10 71.1 8.5 134 164-304 23-216 (226)
127 CHL00095 clpC Clp protease ATP 98.0 0.00011 2.4E-09 81.1 15.7 154 151-318 177-353 (821)
128 COG1118 CysA ABC-type sulfate/ 98.0 4.9E-06 1.1E-10 77.3 4.2 50 163-214 19-71 (345)
129 cd03230 ABC_DR_subfamily_A Thi 98.0 2.1E-05 4.7E-10 69.6 8.0 114 165-295 19-161 (173)
130 PRK10636 putative ABC transpor 98.0 8.2E-06 1.8E-10 87.4 6.3 40 159-200 14-53 (638)
131 cd03228 ABCC_MRP_Like The MRP 98.0 2.4E-05 5.3E-10 69.1 8.3 124 162-303 18-167 (171)
132 COG4987 CydC ABC-type transpor 98.0 2.6E-05 5.6E-10 77.9 9.1 45 155-201 346-391 (573)
133 PF10443 RNA12: RNA12 protein; 98.0 0.0011 2.3E-08 65.5 20.1 192 158-356 1-285 (431)
134 PRK07399 DNA polymerase III su 98.0 0.00021 4.4E-09 69.4 15.0 192 152-349 3-221 (314)
135 cd03235 ABC_Metallic_Cations A 98.0 2.9E-05 6.3E-10 71.4 8.3 38 161-200 14-51 (213)
136 COG1122 CbiO ABC-type cobalt t 98.0 1.2E-05 2.5E-10 74.3 5.6 39 161-201 19-57 (235)
137 TIGR01166 cbiO cobalt transpor 98.0 6.5E-06 1.4E-10 74.3 3.7 37 162-200 8-44 (190)
138 COG1119 ModF ABC-type molybden 97.9 2.7E-05 6E-10 70.3 7.5 43 156-200 41-83 (257)
139 cd03237 ABC_RNaseL_inhibitor_d 97.9 4.5E-05 9.8E-10 71.6 9.2 125 175-303 26-189 (246)
140 cd03214 ABC_Iron-Siderophores_ 97.9 6.9E-05 1.5E-09 66.9 10.0 119 168-295 21-164 (180)
141 PRK11147 ABC transporter ATPas 97.9 1.7E-05 3.7E-10 85.2 7.0 38 161-200 18-55 (635)
142 PRK14086 dnaA chromosomal repl 97.9 0.00014 3E-09 75.6 13.2 153 175-346 315-485 (617)
143 TIGR01184 ntrCD nitrate transp 97.9 6.2E-05 1.3E-09 70.1 9.8 26 175-200 12-37 (230)
144 cd03215 ABC_Carb_Monos_II This 97.9 1.6E-05 3.5E-10 71.1 5.6 35 164-200 18-52 (182)
145 cd03226 ABC_cobalt_CbiO_domain 97.9 3.7E-05 8.1E-10 70.2 8.0 37 162-200 16-52 (205)
146 PRK11247 ssuB aliphatic sulfon 97.9 2.7E-05 5.9E-10 73.6 7.2 38 161-200 27-64 (257)
147 cd03259 ABC_Carb_Solutes_like 97.9 2.9E-05 6.2E-10 71.4 7.0 37 161-199 15-51 (213)
148 PRK08769 DNA polymerase III su 97.9 0.00074 1.6E-08 65.4 16.9 173 158-350 9-209 (319)
149 TIGR01188 drrA daunorubicin re 97.9 2.6E-05 5.6E-10 75.8 6.9 37 162-200 9-45 (302)
150 COG3267 ExeA Type II secretory 97.9 0.00097 2.1E-08 60.8 16.3 187 158-352 36-248 (269)
151 KOG2227 Pre-initiation complex 97.9 0.002 4.2E-08 63.7 19.5 202 151-354 148-373 (529)
152 PTZ00454 26S protease regulato 97.9 0.00032 7E-09 70.3 14.6 169 152-344 144-352 (398)
153 PRK06871 DNA polymerase III su 97.9 0.00097 2.1E-08 64.7 17.4 175 159-346 8-200 (325)
154 PRK13537 nodulation ABC transp 97.9 1.2E-05 2.6E-10 78.1 4.3 39 160-200 21-59 (306)
155 PRK11147 ABC transporter ATPas 97.9 9.4E-06 2E-10 87.2 4.0 38 161-200 334-371 (635)
156 TIGR01241 FtsH_fam ATP-depende 97.9 0.00036 7.8E-09 72.7 15.6 145 175-343 89-260 (495)
157 TIGR00960 3a0501s02 Type II (G 97.9 9.6E-05 2.1E-09 68.1 10.2 37 162-200 19-55 (216)
158 cd03261 ABC_Org_Solvent_Resist 97.9 5.6E-05 1.2E-09 70.7 8.7 37 162-200 16-52 (235)
159 cd03225 ABC_cobalt_CbiO_domain 97.9 0.0001 2.2E-09 67.7 10.2 37 162-200 17-53 (211)
160 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00033 7.1E-09 77.7 15.9 158 149-319 169-349 (852)
161 KOG0991 Replication factor C, 97.9 3.1E-05 6.8E-10 68.9 6.4 104 149-268 23-126 (333)
162 PRK15064 ABC transporter ATP-b 97.9 2.2E-05 4.8E-10 82.6 6.6 38 161-200 16-53 (530)
163 PRK13543 cytochrome c biogenes 97.9 2.6E-05 5.7E-10 71.7 6.2 38 161-200 26-63 (214)
164 TIGR03689 pup_AAA proteasome A 97.9 0.00021 4.5E-09 73.3 13.0 156 152-321 181-380 (512)
165 cd03265 ABC_DrrA DrrA is the A 97.9 4E-05 8.7E-10 70.9 7.3 38 161-200 15-52 (220)
166 PRK09544 znuC high-affinity zi 97.8 0.0001 2.2E-09 69.5 10.1 130 169-304 27-195 (251)
167 PRK13539 cytochrome c biogenes 97.8 7.8E-05 1.7E-09 68.2 9.0 36 162-199 18-53 (207)
168 cd03269 ABC_putative_ATPase Th 97.8 8.5E-05 1.9E-09 68.1 9.2 30 169-200 23-52 (210)
169 PRK09580 sufC cysteine desulfu 97.8 3.2E-05 6.8E-10 73.0 6.4 35 162-198 17-51 (248)
170 cd03229 ABC_Class3 This class 97.8 4.1E-05 8.9E-10 68.2 6.8 36 163-200 17-52 (178)
171 PRK11248 tauB taurine transpor 97.8 0.00011 2.3E-09 69.6 9.9 37 162-200 17-53 (255)
172 TIGR01288 nodI ATP-binding ABC 97.8 1.7E-05 3.7E-10 77.1 4.5 38 161-200 19-56 (303)
173 PRK10865 protein disaggregatio 97.8 0.00021 4.6E-09 78.9 13.5 157 149-319 174-354 (857)
174 PRK13651 cobalt transporter AT 97.8 6.9E-05 1.5E-09 72.7 8.6 37 162-200 23-59 (305)
175 PRK12422 chromosomal replicati 97.8 0.00036 7.7E-09 71.1 14.0 148 175-343 142-307 (445)
176 TIGR01069 mutS2 MutS2 family p 97.8 2.7E-05 5.8E-10 84.4 6.1 185 174-370 322-522 (771)
177 TIGR03740 galliderm_ABC gallid 97.8 0.00013 2.8E-09 67.6 9.9 29 169-199 23-51 (223)
178 TIGR02324 CP_lyasePhnL phospho 97.8 0.00017 3.7E-09 66.9 10.6 37 162-200 24-60 (224)
179 PRK11264 putative amino-acid A 97.8 2.6E-05 5.6E-10 73.7 5.2 37 161-199 18-54 (250)
180 PTZ00361 26 proteosome regulat 97.8 0.0003 6.4E-09 71.1 13.0 169 151-344 181-390 (438)
181 PRK11819 putative ABC transpor 97.8 2.8E-05 6.1E-10 82.3 6.0 39 160-200 21-59 (556)
182 PRK06090 DNA polymerase III su 97.8 0.0026 5.7E-08 61.6 18.9 180 159-369 9-218 (319)
183 PRK13538 cytochrome c biogenes 97.8 0.00012 2.6E-09 66.8 9.3 37 162-200 17-53 (204)
184 CHL00181 cbbX CbbX; Provisiona 97.8 0.00054 1.2E-08 65.7 14.1 128 175-320 60-210 (287)
185 cd03258 ABC_MetN_methionine_tr 97.8 0.0001 2.2E-09 68.8 9.0 37 162-200 21-57 (233)
186 cd03267 ABC_NatA_like Similar 97.8 3.4E-05 7.4E-10 72.1 5.8 37 161-199 36-72 (236)
187 PRK10247 putative ABC transpor 97.8 2.7E-05 5.8E-10 72.3 5.0 37 161-199 22-58 (225)
188 cd03301 ABC_MalK_N The N-termi 97.8 2.8E-05 6.1E-10 71.5 5.1 36 162-199 16-51 (213)
189 COG1125 OpuBA ABC-type proline 97.8 2.1E-05 4.5E-10 71.2 4.0 41 159-201 14-54 (309)
190 cd03268 ABC_BcrA_bacitracin_re 97.8 0.00011 2.4E-09 67.2 9.0 35 163-199 17-51 (208)
191 PRK08181 transposase; Validate 97.8 0.00021 4.6E-09 67.5 11.0 36 164-201 98-133 (269)
192 PRK12608 transcription termina 97.8 0.00024 5.2E-09 69.4 11.5 103 163-267 121-232 (380)
193 TIGR02880 cbbX_cfxQ probable R 97.8 0.00022 4.7E-09 68.5 11.2 128 175-320 59-209 (284)
194 cd03224 ABC_TM1139_LivF_branch 97.8 9.7E-05 2.1E-09 68.4 8.6 36 162-199 16-51 (222)
195 COG4608 AppF ABC-type oligopep 97.8 3.4E-05 7.3E-10 71.2 5.4 129 161-297 28-178 (268)
196 cd03232 ABC_PDR_domain2 The pl 97.8 9.4E-05 2E-09 66.8 8.2 121 163-290 24-169 (192)
197 cd00267 ABC_ATPase ABC (ATP-bi 97.8 5.8E-05 1.3E-09 65.7 6.6 112 175-295 26-146 (157)
198 CHL00176 ftsH cell division pr 97.8 0.00027 5.9E-09 74.9 12.8 145 175-343 217-388 (638)
199 PRK13536 nodulation factor exp 97.8 1.8E-05 3.9E-10 77.8 3.8 42 157-200 52-93 (340)
200 cd03254 ABCC_Glucan_exporter_l 97.8 9E-05 2E-09 69.0 8.3 38 161-200 18-55 (229)
201 PRK10584 putative ABC transpor 97.8 9.6E-05 2.1E-09 68.7 8.5 36 162-199 26-61 (228)
202 cd03213 ABCG_EPDR ABCG transpo 97.8 4.2E-05 9.1E-10 69.1 5.9 123 161-290 24-172 (194)
203 PRK11124 artP arginine transpo 97.8 2.8E-05 6E-10 73.1 4.9 38 161-200 17-54 (242)
204 cd03218 ABC_YhbG The ABC trans 97.8 5.1E-05 1.1E-09 70.8 6.6 38 161-200 15-52 (232)
205 KOG0927 Predicted transporter 97.8 4.7E-05 1E-09 76.0 6.5 47 250-297 235-287 (614)
206 PRK13638 cbiO cobalt transport 97.8 2.9E-05 6.3E-10 74.2 4.9 38 161-200 16-53 (271)
207 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00069 1.5E-08 69.6 15.1 149 174-344 259-430 (489)
208 cd03266 ABC_NatA_sodium_export 97.8 0.00014 3E-09 67.2 9.3 37 162-200 21-57 (218)
209 cd03292 ABC_FtsE_transporter F 97.8 0.00014 3E-09 66.9 9.3 36 163-200 18-53 (214)
210 PRK15064 ABC transporter ATP-b 97.8 4.5E-05 9.8E-10 80.3 6.8 137 160-303 333-508 (530)
211 TIGR02868 CydC thiol reductant 97.8 4.7E-05 1E-09 80.3 6.9 39 160-200 349-387 (529)
212 KOG0062 ATPase component of AB 97.8 1.1E-05 2.3E-10 79.9 1.8 146 151-304 85-269 (582)
213 PRK15056 manganese/iron transp 97.8 0.00013 2.7E-09 69.9 9.1 34 165-200 26-59 (272)
214 PRK13409 putative ATPase RIL; 97.8 0.00019 4.2E-09 76.0 11.3 130 169-305 362-529 (590)
215 cd03217 ABC_FeS_Assembly ABC-t 97.8 5E-05 1.1E-09 69.0 6.1 126 161-294 15-169 (200)
216 cd03281 ABC_MSH5_euk MutS5 hom 97.8 4.1E-05 8.8E-10 70.1 5.5 114 174-295 29-160 (213)
217 TIGR01978 sufC FeS assembly AT 97.8 5.2E-05 1.1E-09 71.3 6.4 35 161-197 15-49 (243)
218 PRK07993 DNA polymerase III su 97.8 0.0016 3.4E-08 63.8 16.8 177 159-347 8-202 (334)
219 cd03293 ABC_NrtD_SsuB_transpor 97.7 0.00013 2.8E-09 67.5 8.8 36 163-200 21-56 (220)
220 COG1373 Predicted ATPase (AAA+ 97.7 0.00039 8.5E-09 69.9 12.8 133 157-314 21-162 (398)
221 PRK08118 topology modulation p 97.7 3.3E-05 7.3E-10 67.8 4.6 35 175-209 2-37 (167)
222 cd03219 ABC_Mj1267_LivG_branch 97.7 0.00012 2.6E-09 68.5 8.7 36 162-199 16-51 (236)
223 cd03262 ABC_HisP_GlnQ_permease 97.7 0.0001 2.2E-09 67.8 8.1 37 162-200 16-52 (213)
224 TIGR02673 FtsE cell division A 97.7 8.2E-05 1.8E-09 68.5 7.3 37 161-199 17-53 (214)
225 PRK09493 glnQ glutamine ABC tr 97.7 0.0001 2.2E-09 69.1 8.1 36 162-199 17-52 (240)
226 PRK13647 cbiO cobalt transport 97.7 7.5E-05 1.6E-09 71.5 7.3 37 162-200 21-57 (274)
227 smart00382 AAA ATPases associa 97.7 0.00014 3E-09 61.5 8.3 109 175-288 3-125 (148)
228 cd03294 ABC_Pro_Gly_Bertaine T 97.7 3.5E-05 7.6E-10 73.5 4.9 35 164-200 42-76 (269)
229 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 0.00017 3.7E-09 66.6 9.4 37 162-200 20-56 (218)
230 PRK10619 histidine/lysine/argi 97.7 8E-05 1.7E-09 70.7 7.2 37 162-200 21-57 (257)
231 PRK14247 phosphate ABC transpo 97.7 7.1E-05 1.5E-09 70.7 6.9 37 161-199 18-54 (250)
232 PRK10418 nikD nickel transport 97.7 0.00027 5.8E-09 66.9 10.8 37 162-200 19-55 (254)
233 cd03243 ABC_MutS_homologs The 97.7 3.1E-05 6.7E-10 70.5 4.2 108 175-296 30-158 (202)
234 PRK11176 lipid transporter ATP 97.7 0.00015 3.3E-09 77.5 10.0 38 161-200 358-395 (582)
235 PRK13546 teichoic acids export 97.7 0.00011 2.4E-09 69.8 8.0 30 169-200 47-76 (264)
236 CHL00131 ycf16 sulfate ABC tra 97.7 0.00011 2.5E-09 69.4 7.9 35 161-197 22-56 (252)
237 cd03252 ABCC_Hemolysin The ABC 97.7 0.00016 3.4E-09 67.8 8.7 35 163-199 19-53 (237)
238 PRK13643 cbiO cobalt transport 97.7 0.00015 3.2E-09 70.0 8.8 37 162-200 22-58 (288)
239 PRK13640 cbiO cobalt transport 97.7 0.00013 2.9E-09 70.1 8.3 37 162-200 23-59 (282)
240 cd03296 ABC_CysA_sulfate_impor 97.7 0.0002 4.4E-09 67.1 9.3 38 161-200 17-54 (239)
241 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00034 7.4E-09 63.8 10.6 38 161-200 20-57 (204)
242 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 7.2E-05 1.6E-09 69.3 6.1 38 161-200 37-74 (224)
243 PRK13652 cbiO cobalt transport 97.7 0.00012 2.7E-09 70.1 7.9 37 162-200 20-56 (277)
244 TIGR03771 anch_rpt_ABC anchore 97.7 0.00026 5.7E-09 65.5 9.8 26 175-200 7-32 (223)
245 PRK10895 lipopolysaccharide AB 97.7 0.00016 3.5E-09 67.9 8.5 37 162-200 19-55 (241)
246 PRK11629 lolD lipoprotein tran 97.7 0.00016 3.4E-09 67.5 8.4 36 162-199 25-60 (233)
247 PLN03073 ABC transporter F fam 97.7 4.8E-05 1E-09 82.1 5.5 39 157-197 188-226 (718)
248 PRK10908 cell division protein 97.7 0.00014 3E-09 67.4 7.8 36 163-200 19-54 (222)
249 COG4152 ABC-type uncharacteriz 97.7 3.4E-05 7.3E-10 69.4 3.5 45 154-200 10-54 (300)
250 cd03283 ABC_MutS-like MutS-lik 97.7 8.4E-05 1.8E-09 67.3 6.2 24 175-198 26-49 (199)
251 PRK13641 cbiO cobalt transport 97.7 0.00017 3.7E-09 69.5 8.6 38 161-200 22-59 (287)
252 PLN03073 ABC transporter F fam 97.7 8.9E-05 1.9E-09 80.1 7.3 136 161-303 524-697 (718)
253 PRK13646 cbiO cobalt transport 97.7 0.00018 3.9E-09 69.3 8.8 38 161-200 22-59 (286)
254 PRK11034 clpA ATP-dependent Cl 97.7 0.00025 5.3E-09 76.7 10.6 155 151-319 184-362 (758)
255 COG4107 PhnK ABC-type phosphon 97.7 0.00019 4.2E-09 61.0 7.7 48 151-200 11-58 (258)
256 cd03236 ABC_RNaseL_inhibitor_d 97.7 0.00025 5.3E-09 66.9 9.5 37 161-200 16-52 (255)
257 PRK13635 cbiO cobalt transport 97.7 0.00012 2.6E-09 70.2 7.5 37 162-200 23-59 (279)
258 TIGR03410 urea_trans_UrtE urea 97.7 5.6E-05 1.2E-09 70.4 5.1 38 161-200 15-52 (230)
259 PRK09984 phosphonate/organopho 97.7 9.3E-05 2E-09 70.4 6.7 37 161-199 19-55 (262)
260 PRK13634 cbiO cobalt transport 97.7 0.0002 4.4E-09 69.1 9.0 37 162-200 23-59 (290)
261 TIGR03411 urea_trans_UrtD urea 97.7 0.00022 4.7E-09 67.0 9.0 35 163-199 19-53 (242)
262 TIGR02211 LolD_lipo_ex lipopro 97.7 0.00018 4E-09 66.5 8.4 36 162-199 21-56 (221)
263 TIGR02315 ABC_phnC phosphonate 97.7 8.5E-05 1.8E-09 69.8 6.2 37 161-199 17-53 (243)
264 PRK10762 D-ribose transporter 97.7 7.1E-05 1.5E-09 78.3 6.2 38 161-200 19-56 (501)
265 PRK11000 maltose/maltodextrin 97.7 0.0002 4.2E-09 71.5 9.0 36 163-200 20-55 (369)
266 TIGR03258 PhnT 2-aminoethylpho 97.6 0.00026 5.6E-09 70.2 9.8 38 162-201 21-58 (362)
267 PRK13645 cbiO cobalt transport 97.6 0.00021 4.6E-09 69.0 9.0 37 162-200 27-63 (289)
268 TIGR01846 type_I_sec_HlyB type 97.6 0.0052 1.1E-07 67.1 20.8 38 161-200 472-509 (694)
269 PRK14250 phosphate ABC transpo 97.6 0.00033 7.2E-09 65.7 10.1 36 162-199 19-54 (241)
270 PRK15439 autoinducer 2 ABC tra 97.6 0.0003 6.5E-09 73.7 10.8 38 161-200 26-63 (510)
271 PF00004 AAA: ATPase family as 97.6 0.00017 3.6E-09 60.6 7.3 23 177-199 1-23 (132)
272 PRK13650 cbiO cobalt transport 97.6 0.00016 3.4E-09 69.5 8.0 36 163-200 24-59 (279)
273 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00064 1.4E-08 62.1 11.7 37 161-199 23-59 (207)
274 PRK11701 phnK phosphonate C-P 97.6 0.00026 5.7E-09 67.1 9.4 37 162-200 22-58 (258)
275 PRK10938 putative molybdenum t 97.6 9.8E-05 2.1E-09 77.1 7.1 38 161-200 18-55 (490)
276 cd03257 ABC_NikE_OppD_transpor 97.6 0.00025 5.4E-09 65.9 9.1 37 161-199 20-56 (228)
277 COG1127 Ttg2A ABC-type transpo 97.6 9.6E-05 2.1E-09 66.6 5.9 43 157-201 19-61 (263)
278 COG4586 ABC-type uncharacteriz 97.6 0.00018 3.9E-09 66.0 7.7 38 161-200 39-76 (325)
279 PRK10744 pstB phosphate transp 97.6 0.00016 3.5E-09 68.7 7.8 37 161-199 28-64 (260)
280 PRK08058 DNA polymerase III su 97.6 0.002 4.3E-08 63.3 15.6 141 158-318 11-181 (329)
281 PRK13540 cytochrome c biogenes 97.6 7.1E-05 1.5E-09 68.1 5.2 38 161-200 16-53 (200)
282 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00018 3.8E-09 67.3 8.0 37 162-200 17-53 (236)
283 PRK10536 hypothetical protein; 97.6 0.00061 1.3E-08 63.1 11.1 55 151-207 53-107 (262)
284 PRK11153 metN DL-methionine tr 97.6 0.00026 5.6E-09 70.0 9.5 36 163-200 22-57 (343)
285 PRK11614 livF leucine/isoleuci 97.6 0.00013 2.8E-09 68.3 7.1 37 161-199 20-56 (237)
286 cd03263 ABC_subfamily_A The AB 97.6 0.00016 3.4E-09 66.9 7.5 38 161-200 17-54 (220)
287 cd03253 ABCC_ATM1_transporter 97.6 0.00051 1.1E-08 64.2 11.0 36 163-200 18-53 (236)
288 cd03244 ABCC_MRP_domain2 Domai 97.6 0.00044 9.5E-09 64.0 10.5 37 161-199 19-55 (221)
289 TIGR02770 nickel_nikD nickel i 97.6 0.00035 7.5E-09 65.1 9.8 26 175-200 13-38 (230)
290 TIGR03608 L_ocin_972_ABC putat 97.6 0.00024 5.2E-09 64.9 8.6 36 163-200 15-50 (206)
291 PRK11300 livG leucine/isoleuci 97.6 0.00014 3.1E-09 68.8 7.3 38 161-200 20-57 (255)
292 TIGR01277 thiQ thiamine ABC tr 97.6 0.00032 6.9E-09 64.5 9.3 29 170-200 22-50 (213)
293 PRK13657 cyclic beta-1,2-gluca 97.6 0.00012 2.7E-09 78.1 7.6 40 159-200 348-387 (588)
294 TIGR03522 GldA_ABC_ATP gliding 97.6 0.00018 4E-09 69.8 8.0 34 165-200 21-54 (301)
295 PRK15112 antimicrobial peptide 97.6 0.00011 2.5E-09 70.0 6.5 38 161-200 28-65 (267)
296 cd03251 ABCC_MsbA MsbA is an e 97.6 0.00043 9.2E-09 64.7 10.2 36 163-200 19-54 (234)
297 cd03295 ABC_OpuCA_Osmoprotecti 97.6 0.00037 7.9E-09 65.5 9.8 36 163-200 18-53 (242)
298 PRK14269 phosphate ABC transpo 97.6 0.00049 1.1E-08 64.8 10.7 35 162-198 18-52 (246)
299 COG3842 PotA ABC-type spermidi 97.6 5.5E-05 1.2E-09 73.4 4.2 43 156-200 15-57 (352)
300 TIGR03005 ectoine_ehuA ectoine 97.6 0.0002 4.4E-09 67.7 8.1 36 163-200 17-52 (252)
301 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0039 8.5E-08 59.2 16.8 57 159-222 8-64 (262)
302 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00052 1.1E-08 63.7 10.6 38 161-200 29-66 (226)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 97.6 0.00011 2.3E-09 77.8 6.8 38 161-200 20-57 (552)
304 COG1123 ATPase components of v 97.6 0.0001 2.2E-09 75.0 6.2 39 160-200 305-343 (539)
305 TIGR02314 ABC_MetN D-methionin 97.6 0.00034 7.3E-09 68.8 9.7 37 162-200 21-57 (343)
306 PRK14273 phosphate ABC transpo 97.6 0.00015 3.3E-09 68.6 7.1 37 161-199 22-58 (254)
307 PRK13644 cbiO cobalt transport 97.6 0.00011 2.4E-09 70.3 6.2 37 162-200 18-54 (274)
308 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.00058 1.3E-08 64.0 10.9 36 163-200 20-55 (238)
309 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00043 9.4E-09 63.5 9.8 30 169-200 21-50 (211)
310 PRK13649 cbiO cobalt transport 97.6 0.00022 4.7E-09 68.6 8.1 36 162-199 23-58 (280)
311 TIGR00602 rad24 checkpoint pro 97.6 0.00045 9.8E-09 72.8 11.0 53 148-200 79-136 (637)
312 cd03264 ABC_drug_resistance_li 97.6 0.0002 4.4E-09 65.7 7.5 24 176-199 27-50 (211)
313 cd03256 ABC_PhnC_transporter A 97.6 0.00035 7.5E-09 65.6 9.3 36 162-199 17-52 (241)
314 TIGR01192 chvA glucan exporter 97.6 0.00014 3.1E-09 77.4 7.3 38 161-200 350-387 (585)
315 TIGR00968 3a0106s01 sulfate AB 97.6 0.00022 4.7E-09 66.8 7.7 35 163-199 17-51 (237)
316 TIGR00958 3a01208 Conjugate Tr 97.6 0.00031 6.6E-09 76.7 10.0 39 160-200 495-533 (711)
317 PRK11831 putative ABC transpor 97.6 0.00023 5E-09 67.9 8.1 36 163-200 24-59 (269)
318 PRK13545 tagH teichoic acids e 97.6 0.00037 8E-09 71.3 9.7 37 162-200 40-76 (549)
319 PRK11819 putative ABC transpor 97.6 0.00015 3.3E-09 76.8 7.2 39 160-200 338-376 (556)
320 PRK15093 antimicrobial peptide 97.6 0.00036 7.7E-09 68.6 9.3 37 161-199 22-58 (330)
321 cd03245 ABCC_bacteriocin_expor 97.6 0.00053 1.2E-08 63.3 10.0 37 161-199 19-55 (220)
322 PRK13632 cbiO cobalt transport 97.6 0.00024 5.3E-09 67.9 7.9 37 162-200 25-61 (271)
323 PRK14267 phosphate ABC transpo 97.6 0.00016 3.4E-09 68.5 6.6 37 161-199 19-55 (253)
324 PRK11160 cysteine/glutathione 97.5 0.00041 9E-09 73.8 10.3 39 160-200 354-392 (574)
325 PRK13631 cbiO cobalt transport 97.5 0.00033 7.1E-09 68.5 8.8 38 161-200 41-78 (320)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 97.5 9.5E-05 2.1E-09 78.3 5.4 39 160-200 336-374 (552)
327 cd03231 ABC_CcmA_heme_exporter 97.5 0.00014 3E-09 66.1 5.9 36 162-199 16-51 (201)
328 cd03297 ABC_ModC_molybdenum_tr 97.5 0.00017 3.6E-09 66.4 6.4 27 172-199 22-48 (214)
329 PF13177 DNA_pol3_delta2: DNA 97.5 0.0017 3.7E-08 56.6 12.4 132 157-307 1-162 (162)
330 PRK13541 cytochrome c biogenes 97.5 0.00031 6.8E-09 63.5 8.0 26 175-200 27-52 (195)
331 PRK13648 cbiO cobalt transport 97.5 0.00032 6.9E-09 67.0 8.5 37 162-200 25-61 (269)
332 PRK14259 phosphate ABC transpo 97.5 0.00056 1.2E-08 65.3 10.1 37 161-199 28-64 (269)
333 TIGR01186 proV glycine betaine 97.5 6.9E-05 1.5E-09 74.1 3.9 30 169-200 16-45 (363)
334 COG2812 DnaX DNA polymerase II 97.5 0.00083 1.8E-08 68.6 11.7 188 149-344 12-215 (515)
335 PRK13639 cbiO cobalt transport 97.5 0.00031 6.6E-09 67.3 8.3 36 163-200 19-54 (275)
336 PRK10851 sulfate/thiosulfate t 97.5 0.00057 1.2E-08 67.7 10.3 30 169-200 25-54 (353)
337 PRK09700 D-allose transporter 97.5 0.00017 3.6E-09 75.7 7.0 37 161-199 20-56 (510)
338 PRK14246 phosphate ABC transpo 97.5 0.00011 2.4E-09 69.6 5.1 41 157-199 21-61 (257)
339 KOG0743 AAA+-type ATPase [Post 97.5 0.016 3.5E-07 57.4 19.9 164 159-356 211-417 (457)
340 PRK13642 cbiO cobalt transport 97.5 0.00025 5.4E-09 68.0 7.6 37 162-200 23-59 (277)
341 PRK11650 ugpC glycerol-3-phosp 97.5 0.00019 4.1E-09 71.2 6.9 36 163-200 21-56 (356)
342 TIGR03265 PhnT2 putative 2-ami 97.5 0.00037 8E-09 69.0 9.0 30 169-200 27-56 (353)
343 TIGR02858 spore_III_AA stage I 97.5 0.00014 3.1E-09 68.7 5.7 118 170-293 107-233 (270)
344 TIGR02323 CP_lyasePhnK phospho 97.5 0.00052 1.1E-08 64.9 9.6 37 162-200 19-55 (253)
345 PRK09536 btuD corrinoid ABC tr 97.5 0.00045 9.7E-09 69.3 9.5 37 162-200 19-55 (402)
346 PRK13549 xylose transporter AT 97.5 0.00018 3.8E-09 75.4 6.9 38 160-199 19-56 (506)
347 PRK11144 modC molybdate transp 97.5 0.00041 8.8E-09 68.9 9.1 26 175-200 25-50 (352)
348 PRK10070 glycine betaine trans 97.5 0.00044 9.5E-09 69.4 9.4 26 175-200 55-80 (400)
349 PRK11432 fbpC ferric transport 97.5 0.00027 5.9E-09 69.8 7.8 37 162-200 22-58 (351)
350 PRK13548 hmuV hemin importer A 97.5 0.00023 4.9E-09 67.5 7.0 38 161-200 17-54 (258)
351 COG0593 DnaA ATPase involved i 97.5 0.001 2.3E-08 65.8 11.7 148 174-341 113-278 (408)
352 cd03233 ABC_PDR_domain1 The pl 97.5 0.00063 1.4E-08 61.9 9.6 35 163-199 24-58 (202)
353 PRK09452 potA putrescine/sperm 97.5 0.0005 1.1E-08 68.5 9.6 37 162-200 30-66 (375)
354 TIGR02857 CydD thiol reductant 97.5 0.0003 6.4E-09 74.3 8.5 39 160-200 336-374 (529)
355 PRK13637 cbiO cobalt transport 97.5 0.00044 9.6E-09 66.6 9.0 37 162-200 23-59 (287)
356 PRK10771 thiQ thiamine transpo 97.5 0.0004 8.7E-09 64.7 8.4 30 169-200 22-51 (232)
357 PRK14242 phosphate transporter 97.5 0.00019 4.1E-09 67.9 6.3 36 161-198 21-56 (253)
358 PRK14235 phosphate transporter 97.5 0.00081 1.7E-08 64.1 10.6 36 162-199 35-70 (267)
359 PRK14275 phosphate ABC transpo 97.5 0.00076 1.7E-08 64.9 10.5 35 161-197 54-88 (286)
360 TIGR01193 bacteriocin_ABC ABC- 97.5 0.00044 9.5E-09 75.7 9.8 39 160-200 488-526 (708)
361 PRK11607 potG putrescine trans 97.5 0.00031 6.7E-09 70.1 7.9 36 163-200 36-71 (377)
362 TIGR03375 type_I_sec_LssB type 97.5 0.00026 5.6E-09 77.3 8.0 39 160-200 479-517 (694)
363 PRK15439 autoinducer 2 ABC tra 97.5 0.00056 1.2E-08 71.7 10.2 36 162-199 279-314 (510)
364 TIGR02142 modC_ABC molybdenum 97.5 0.00018 3.8E-09 71.5 6.1 26 175-200 24-49 (354)
365 PRK15079 oligopeptide ABC tran 97.5 0.00042 9.1E-09 68.0 8.7 37 162-200 37-73 (331)
366 cd03282 ABC_MSH4_euk MutS4 hom 97.5 9.6E-05 2.1E-09 67.0 3.9 113 175-296 30-158 (204)
367 cd01120 RecA-like_NTPases RecA 97.5 0.00041 8.9E-09 60.5 7.9 39 176-216 1-39 (165)
368 TIGR02633 xylG D-xylose ABC tr 97.5 0.00028 6E-09 73.9 7.9 38 160-199 274-311 (500)
369 PF04665 Pox_A32: Poxvirus A32 97.5 0.00027 5.9E-09 65.0 6.8 36 175-212 14-49 (241)
370 cd03278 ABC_SMC_barmotin Barmo 97.5 0.00059 1.3E-08 61.7 9.0 24 175-198 23-46 (197)
371 PF05673 DUF815: Protein of un 97.5 0.0086 1.9E-07 54.9 16.3 52 151-202 25-80 (249)
372 TIGR00972 3a0107s01c2 phosphat 97.5 0.00018 3.9E-09 67.8 5.8 37 161-199 16-52 (247)
373 PRK10575 iron-hydroxamate tran 97.5 0.00093 2E-08 63.6 10.8 37 161-199 26-62 (265)
374 TIGR03796 NHPM_micro_ABC1 NHPM 97.5 0.00024 5.3E-09 77.7 7.6 39 160-200 493-531 (710)
375 PRK10789 putative multidrug tr 97.5 0.00085 1.8E-08 71.4 11.4 38 161-200 330-367 (569)
376 KOG0066 eIF2-interacting prote 97.5 0.00024 5.3E-09 69.0 6.5 49 255-304 430-483 (807)
377 KOG0062 ATPase component of AB 97.5 0.00018 3.9E-09 71.6 5.6 122 175-296 391-546 (582)
378 TIGR01189 ccmA heme ABC export 97.5 0.00014 3E-09 66.1 4.6 35 163-199 17-51 (198)
379 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00014 3E-09 66.1 4.6 21 175-195 29-49 (200)
380 PRK10522 multidrug transporter 97.5 0.00027 6E-09 74.8 7.5 38 161-200 338-375 (547)
381 PRK13636 cbiO cobalt transport 97.5 0.00025 5.5E-09 68.2 6.6 37 161-199 21-57 (283)
382 PRK10982 galactose/methyl gala 97.5 0.00025 5.4E-09 74.1 7.0 37 161-199 13-49 (491)
383 PRK13409 putative ATPase RIL; 97.4 0.0004 8.6E-09 73.6 8.5 37 161-200 89-125 (590)
384 PRK13633 cobalt transporter AT 97.4 0.0003 6.6E-09 67.5 7.0 38 161-200 25-62 (280)
385 TIGR03269 met_CoM_red_A2 methy 97.4 0.0002 4.3E-09 75.4 6.2 36 161-198 15-50 (520)
386 COG3638 ABC-type phosphate/pho 97.4 0.00011 2.5E-09 65.9 3.7 42 157-200 15-56 (258)
387 PRK11174 cysteine/glutathione 97.4 0.00039 8.4E-09 74.4 8.5 36 161-198 365-400 (588)
388 PRK09700 D-allose transporter 97.4 0.0004 8.6E-09 72.9 8.4 37 161-199 278-314 (510)
389 PRK10762 D-ribose transporter 97.4 0.00077 1.7E-08 70.5 10.5 36 162-199 268-303 (501)
390 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.001 2.2E-08 63.7 10.4 38 161-200 52-89 (282)
391 TIGR03873 F420-0_ABC_ATP propo 97.4 0.0004 8.7E-09 65.8 7.6 38 161-200 16-53 (256)
392 TIGR02633 xylG D-xylose ABC tr 97.4 0.00022 4.7E-09 74.7 6.3 37 161-199 16-52 (500)
393 PRK14272 phosphate ABC transpo 97.4 0.00021 4.6E-09 67.5 5.7 37 161-199 19-55 (252)
394 COG4559 ABC-type hemin transpo 97.4 0.00018 3.8E-09 63.5 4.5 39 160-200 15-53 (259)
395 PRK10253 iron-enterobactin tra 97.4 0.00027 5.9E-09 67.3 6.3 38 161-200 22-59 (265)
396 TIGR00954 3a01203 Peroxysomal 97.4 0.00075 1.6E-08 72.8 10.4 39 160-200 466-504 (659)
397 COG4988 CydD ABC-type transpor 97.4 0.00036 7.7E-09 71.0 7.3 136 160-304 335-528 (559)
398 PRK11022 dppD dipeptide transp 97.4 0.00077 1.7E-08 66.1 9.6 37 161-199 22-58 (326)
399 PRK11231 fecE iron-dicitrate t 97.4 0.00092 2E-08 63.3 9.8 37 161-199 17-53 (255)
400 cd03300 ABC_PotA_N PotA is an 97.4 0.0011 2.3E-08 61.8 10.2 38 161-200 15-52 (232)
401 TIGR03269 met_CoM_red_A2 methy 97.4 0.00093 2E-08 70.3 10.8 37 161-199 299-335 (520)
402 PRK14268 phosphate ABC transpo 97.4 0.00074 1.6E-08 64.1 9.1 37 161-199 27-63 (258)
403 COG4604 CeuD ABC-type enteroch 97.4 0.0002 4.4E-09 62.4 4.6 44 156-201 11-54 (252)
404 PRK14237 phosphate transporter 97.4 0.0009 2E-08 63.8 9.7 37 161-199 35-71 (267)
405 PRK14264 phosphate ABC transpo 97.4 0.00092 2E-08 65.0 9.9 36 161-198 60-95 (305)
406 PRK14270 phosphate ABC transpo 97.4 0.00041 9E-09 65.5 7.2 35 162-198 20-54 (251)
407 PRK11288 araG L-arabinose tran 97.4 0.00035 7.7E-09 73.1 7.4 36 162-199 269-304 (501)
408 PRK14265 phosphate ABC transpo 97.4 0.00023 4.9E-09 68.2 5.5 36 161-198 35-70 (274)
409 PRK07261 topology modulation p 97.4 0.00058 1.3E-08 60.3 7.7 34 176-209 2-36 (171)
410 PRK13549 xylose transporter AT 97.4 0.0004 8.7E-09 72.8 7.8 37 161-199 277-313 (506)
411 PRK00409 recombination and DNA 97.4 0.00012 2.7E-09 79.6 4.0 176 174-370 327-527 (782)
412 TIGR01243 CDC48 AAA family ATP 97.4 0.0049 1.1E-07 67.6 16.4 147 174-344 487-658 (733)
413 PRK10419 nikE nickel transport 97.4 0.00084 1.8E-08 64.0 9.3 37 162-200 28-64 (268)
414 TIGR00763 lon ATP-dependent pr 97.4 0.0049 1.1E-07 67.8 16.4 46 155-200 322-373 (775)
415 TIGR01842 type_I_sec_PrtD type 97.4 0.00097 2.1E-08 70.6 10.7 39 160-200 332-370 (544)
416 PRK14243 phosphate transporter 97.4 0.00024 5.1E-09 67.7 5.5 36 161-198 25-60 (264)
417 cd03290 ABCC_SUR1_N The SUR do 97.4 0.0021 4.6E-08 59.2 11.7 36 162-199 17-52 (218)
418 PRK14253 phosphate ABC transpo 97.4 0.00032 6.9E-09 66.2 6.3 37 161-199 18-54 (249)
419 PRK08116 hypothetical protein; 97.4 0.00034 7.3E-09 66.4 6.4 98 175-289 115-221 (268)
420 cd03288 ABCC_SUR2 The SUR doma 97.4 0.0022 4.8E-08 60.8 12.0 36 162-199 37-72 (257)
421 PRK11308 dppF dipeptide transp 97.4 0.00057 1.2E-08 67.0 8.2 36 162-199 31-66 (327)
422 PRK10982 galactose/methyl gala 97.4 0.00086 1.9E-08 70.0 10.0 37 161-199 263-299 (491)
423 PF00448 SRP54: SRP54-type pro 97.4 0.0011 2.4E-08 59.7 9.3 86 174-264 1-92 (196)
424 KOG0057 Mitochondrial Fe/S clu 97.4 0.00065 1.4E-08 68.3 8.4 44 154-199 359-403 (591)
425 COG4181 Predicted ABC-type tra 97.4 0.0013 2.8E-08 56.2 8.8 119 175-296 37-214 (228)
426 TIGR03797 NHPM_micro_ABC2 NHPM 97.4 0.00053 1.1E-08 74.8 8.5 39 160-200 467-505 (686)
427 COG4525 TauB ABC-type taurine 97.4 0.00067 1.5E-08 59.1 7.3 38 161-200 20-57 (259)
428 PRK14274 phosphate ABC transpo 97.4 0.0018 4E-08 61.4 11.2 35 163-199 29-63 (259)
429 PRK09473 oppD oligopeptide tra 97.4 0.00078 1.7E-08 66.1 8.8 38 161-200 31-68 (330)
430 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00092 2E-08 63.8 9.1 36 162-199 20-55 (275)
431 cd03299 ABC_ModC_like Archeal 97.4 0.00064 1.4E-08 63.5 7.9 31 168-200 21-51 (235)
432 PRK15134 microcin C ABC transp 97.4 0.00067 1.5E-08 71.5 8.9 37 161-199 24-60 (529)
433 KOG0058 Peptide exporter, ABC 97.4 0.0026 5.6E-08 66.4 12.8 38 161-200 483-520 (716)
434 smart00534 MUTSac ATPase domai 97.4 0.00012 2.6E-09 65.6 2.8 41 255-295 78-128 (185)
435 PRK14271 phosphate ABC transpo 97.4 0.00032 6.8E-09 67.2 5.9 39 159-199 34-72 (276)
436 PRK14261 phosphate ABC transpo 97.4 0.0013 2.8E-08 62.2 10.0 35 161-197 21-55 (253)
437 cd03234 ABCG_White The White s 97.4 0.00058 1.2E-08 63.4 7.5 36 162-199 23-58 (226)
438 COG0444 DppD ABC-type dipeptid 97.3 0.00097 2.1E-08 63.1 8.8 37 161-199 20-56 (316)
439 PF01695 IstB_IS21: IstB-like 97.3 0.00062 1.3E-08 60.4 7.2 35 175-211 48-82 (178)
440 PRK14248 phosphate ABC transpo 97.3 0.00036 7.7E-09 66.6 6.2 37 160-198 35-71 (268)
441 PRK10261 glutathione transport 97.3 0.0012 2.7E-08 70.8 10.9 37 161-199 31-67 (623)
442 cd01131 PilT Pilus retraction 97.3 0.00031 6.6E-09 63.7 5.4 110 175-293 2-113 (198)
443 PRK14251 phosphate ABC transpo 97.3 0.0013 2.8E-08 62.1 9.9 37 161-199 19-55 (251)
444 PRK14258 phosphate ABC transpo 97.3 0.00036 7.9E-09 66.3 6.1 38 161-200 22-59 (261)
445 PRK14238 phosphate transporter 97.3 0.0014 3E-08 62.6 10.0 37 161-199 39-75 (271)
446 PRK15134 microcin C ABC transp 97.3 0.00035 7.6E-09 73.6 6.5 36 161-198 301-336 (529)
447 cd03227 ABC_Class2 ABC-type Cl 97.3 0.00063 1.4E-08 59.5 7.1 105 175-294 22-146 (162)
448 COG1135 AbcC ABC-type metal io 97.3 0.00069 1.5E-08 63.5 7.5 36 163-200 23-58 (339)
449 PRK14256 phosphate ABC transpo 97.3 0.0013 2.8E-08 62.1 9.7 35 162-198 20-54 (252)
450 TIGR02203 MsbA_lipidA lipid A 97.3 0.0011 2.3E-08 70.8 10.2 38 161-200 347-384 (571)
451 PLN03211 ABC transporter G-25; 97.3 0.0008 1.7E-08 72.3 9.1 38 160-199 82-119 (659)
452 PRK11288 araG L-arabinose tran 97.3 0.0011 2.3E-08 69.4 9.9 37 161-199 19-55 (501)
453 TIGR02769 nickel_nikE nickel i 97.3 0.001 2.2E-08 63.4 8.8 38 161-200 26-63 (265)
454 COG1123 ATPase components of v 97.3 0.00028 6E-09 71.9 5.1 39 160-200 23-61 (539)
455 COG4619 ABC-type uncharacteriz 97.3 0.0008 1.7E-08 57.2 6.9 38 161-200 18-55 (223)
456 PRK14254 phosphate ABC transpo 97.3 0.00024 5.3E-09 68.3 4.5 38 160-199 53-90 (285)
457 PRK14249 phosphate ABC transpo 97.3 0.0015 3.2E-08 61.8 9.8 37 162-200 20-56 (251)
458 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00039 8.4E-09 63.9 5.6 107 175-295 32-160 (222)
459 PRK14244 phosphate ABC transpo 97.3 0.0014 3E-08 62.0 9.6 34 163-198 22-55 (251)
460 PRK14240 phosphate transporter 97.3 0.00053 1.2E-08 64.7 6.7 35 162-198 19-53 (250)
461 COG1134 TagH ABC-type polysacc 97.3 0.0004 8.6E-09 63.0 5.4 38 162-201 43-80 (249)
462 cd03284 ABC_MutS1 MutS1 homolo 97.3 0.00028 6E-09 64.8 4.5 22 175-196 31-52 (216)
463 TIGR03415 ABC_choXWV_ATP choli 97.3 0.00066 1.4E-08 67.6 7.5 26 175-200 51-76 (382)
464 PRK10938 putative molybdenum t 97.3 0.00015 3.2E-09 75.7 3.0 36 161-198 275-310 (490)
465 PRK06964 DNA polymerase III su 97.3 0.013 2.7E-07 57.5 16.1 88 254-350 131-226 (342)
466 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.2E-09 58.7 3.5 24 176-199 1-24 (121)
467 TIGR00955 3a01204 The Eye Pigm 97.3 0.0015 3.3E-08 70.0 10.5 38 161-200 40-77 (617)
468 COG0466 Lon ATP-dependent Lon 97.3 0.001 2.2E-08 69.1 8.6 151 155-319 325-508 (782)
469 cd03240 ABC_Rad50 The catalyti 97.3 0.0024 5.2E-08 58.1 10.3 48 254-303 138-195 (204)
470 PRK09183 transposase/IS protei 97.3 0.00049 1.1E-08 65.0 5.9 26 175-200 103-128 (259)
471 PRK10790 putative multidrug tr 97.3 0.001 2.2E-08 71.3 9.1 39 161-201 356-394 (592)
472 TIGR02982 heterocyst_DevA ABC 97.3 0.00074 1.6E-08 62.4 7.0 36 162-199 21-56 (220)
473 COG4615 PvdE ABC-type sideroph 97.2 0.0028 6E-08 61.3 10.7 27 175-201 350-376 (546)
474 PRK14262 phosphate ABC transpo 97.2 0.0016 3.4E-08 61.5 9.2 35 162-198 19-53 (250)
475 PRK12727 flagellar biosynthesi 97.2 0.014 3E-07 59.8 16.3 86 175-265 351-438 (559)
476 PRK14263 phosphate ABC transpo 97.2 0.00034 7.4E-09 66.4 4.7 40 157-198 19-58 (261)
477 PRK14255 phosphate ABC transpo 97.2 0.0018 3.8E-08 61.2 9.5 34 162-197 21-54 (252)
478 KOG0741 AAA+-type ATPase [Post 97.2 0.0062 1.4E-07 61.0 13.3 154 174-353 538-716 (744)
479 PRK14266 phosphate ABC transpo 97.2 0.0013 2.9E-08 62.0 8.6 34 163-198 20-53 (250)
480 TIGR02204 MsbA_rel ABC transpo 97.2 0.00096 2.1E-08 71.3 8.4 38 161-200 355-392 (576)
481 PRK14260 phosphate ABC transpo 97.2 0.0029 6.2E-08 60.1 10.7 36 162-199 23-58 (259)
482 COG3845 ABC-type uncharacteriz 97.2 0.00069 1.5E-08 67.4 6.5 34 165-200 23-56 (501)
483 COG1222 RPT1 ATP-dependent 26S 97.2 0.01 2.2E-07 56.9 13.8 194 152-370 150-394 (406)
484 COG3839 MalK ABC-type sugar tr 97.2 0.0009 1.9E-08 64.7 7.0 36 163-200 20-55 (338)
485 PRK04132 replication factor C 97.2 0.0096 2.1E-07 64.8 15.4 152 179-348 569-730 (846)
486 COG3840 ThiQ ABC-type thiamine 97.2 0.0036 7.9E-08 54.1 9.6 27 175-201 26-52 (231)
487 PRK08699 DNA polymerase III su 97.2 0.0043 9.3E-08 60.6 11.6 82 255-345 113-202 (325)
488 COG1132 MdlB ABC-type multidru 97.2 0.00036 7.9E-09 74.2 4.3 41 158-200 341-381 (567)
489 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0027 5.8E-08 64.7 9.9 93 152-266 189-293 (802)
490 TIGR01243 CDC48 AAA family ATP 97.1 0.0092 2E-07 65.4 15.0 169 152-344 177-382 (733)
491 PRK14257 phosphate ABC transpo 97.1 0.0029 6.2E-08 62.1 9.9 37 161-199 97-133 (329)
492 PRK10261 glutathione transport 97.1 0.0028 6E-08 68.1 10.6 37 161-199 339-375 (623)
493 cd03285 ABC_MSH2_euk MutS2 hom 97.1 0.00025 5.3E-09 65.4 2.2 167 174-353 30-217 (222)
494 KOG0730 AAA+-type ATPase [Post 97.1 0.0081 1.7E-07 62.0 13.0 147 174-344 468-638 (693)
495 PLN00020 ribulose bisphosphate 97.1 0.0025 5.4E-08 61.8 8.8 28 174-201 148-175 (413)
496 COG1484 DnaC DNA replication p 97.1 0.0036 7.9E-08 58.8 9.9 82 164-266 97-178 (254)
497 COG4172 ABC-type uncharacteriz 97.1 0.00084 1.8E-08 65.0 5.6 37 162-200 303-339 (534)
498 TIGR03499 FlhF flagellar biosy 97.1 0.0032 6.9E-08 60.3 9.4 84 175-264 195-281 (282)
499 PRK14722 flhF flagellar biosyn 97.0 0.0029 6.3E-08 62.4 9.0 86 175-265 138-225 (374)
500 TIGR02237 recomb_radB DNA repa 97.0 0.0031 6.6E-08 57.7 8.6 45 175-222 13-57 (209)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-66 Score=554.79 Aligned_cols=485 Identities=30% Similarity=0.480 Sum_probs=385.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 044393 5 AGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADV 84 (513)
Q Consensus 5 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~v~~Wl~~v~~~~~d~ 84 (513)
...++++.+.+..+... +...++.+..|++.|..++.+++++++ + ......+..|.+.++++.|++
T Consensus 6 s~~~~~~~~~l~~~~~~-----------~~~~~~~i~~Lk~~L~~l~~~l~d~~a--~-~~~~~~~~~~~e~~~~~~~~~ 71 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESEC-----------LDGKDNYILELKENLKALQSALEDLDA--K-RDDLERRVNWEEDVGDLVYLA 71 (889)
T ss_pred EEehhhHHHHHHHHHHH-----------HhchHHHHHHHHHHHHHHHHHHHHHHh--h-cchHHHHHHHHHHHHHHHHHH
Confidence 33566676666555433 345556788888999999999999983 3 345788999999999999999
Q ss_pred HHHHHHHHhhc------------------cccCCCC-CChhhhhhhcHHHHHHHHHHHhhhhcCCCCccccCCCCCCCcc
Q 044393 85 QTLKTKIAEKK------------------SCFNGWC-PNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKE 145 (513)
Q Consensus 85 ed~~d~~~~~~------------------~~~~~~~-~~~~~r~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 145 (513)
++.++.+.-.. -|+.+.+ .....-+.+++++.++.+.++.+...+.+........++....
T Consensus 72 e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 72 EDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence 99987664110 1111111 1222334556666666666666654444444332111111111
Q ss_pred cCCccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh-hcCCCCeEEEEEEcCCCChHHHHHH
Q 044393 146 MHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR-QEKIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
..+...... +|.+..++.+...|..++..+++|+||||+||||||++++|+.. ...+|+.++|++||++++...++.+
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 112122222 89999999999999888779999999999999999999999998 8899999999999999999999999
Q ss_pred HHHHhCCCCCCCCH---HHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC----CcEEEEEeCchHHHhh-cC
Q 044393 225 LVKWLGWELKEKDE---EERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQVCDR-MG 296 (513)
Q Consensus 225 i~~~l~~~~~~~~~---~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~----~~~iivTtr~~~v~~~-~~ 296 (513)
|++.++........ .+.+..+.+ +..++||||||||+|+..+|+.+..+.+ |++|++|||+..||.. ++
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~---~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLN---LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHH---HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence 99998875444333 455555554 4446999999999999999999988877 7999999999999999 77
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCCC--CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHHhhccc
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWNVALDKLQNAKL 373 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~ 373 (513)
....++++.|++++||+||++.++... ..+.++++|++++++|+|+|||++++|+.|+.+ +..+|+.+.+.+.+...
T Consensus 308 ~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 308 VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 778999999999999999999998542 234489999999999999999999999999988 67799999999888755
Q ss_pred CCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhccccc-ccHHHHHHHHHHHHHHH
Q 044393 374 DKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQA-ESIEKARSLLRGTIKGL 452 (513)
Q Consensus 374 ~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~-~~~~~~~~~~~~~l~~L 452 (513)
.+.++ ....++.+|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ...+.+.+.++.|+.+|
T Consensus 388 ~~~~~---~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 388 ADFSG---MEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred CCCCc---hhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 55422 234799999999999996 99999999999999999999999999999999994 55777889999999999
Q ss_pred hHccccceeC---CCCcEEecHHHHHHHHHHhc-----cccceEEEecCCccccccccccccccccccC
Q 044393 453 KDSSLLLDID---DDGFVKMHDIVRDVAIWIGK-----VEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513 (513)
Q Consensus 453 ~~~sll~~~~---~~~~~~mH~lv~~~a~~~~~-----~e~~~~~~~~~~~~~~~p~~~~~~~~~~isl 513 (513)
++++|++... ...+|+|||+|||+|.++++ .++ .++.++.++.+.|....|...+|+|+
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEE
Confidence 9999998765 23579999999999999998 554 77888778888999999999999885
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.3e-43 Score=339.84 Aligned_cols=269 Identities=35% Similarity=0.581 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC-
Q 044393 158 TKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK- 234 (513)
Q Consensus 158 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 234 (513)
|+.++++|.+.|.. ++.++|+|+|+||+||||||..++++...+.+|+.++|+.++...+...++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999987 678999999999999999999999997777889999999999999999999999999988743
Q ss_pred ---CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC----CcEEEEEeCchHHHhhcCC-cceeecCCC
Q 044393 235 ---EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQVCDRMGC-DTRIKLDAL 306 (513)
Q Consensus 235 ---~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~----~~~iivTtr~~~v~~~~~~-~~~~~l~~L 306 (513)
..+.......+.+ .+.+ +++||||||+|+...|..+....+ |++||||||+..++..+.. ...+++++|
T Consensus 81 ~~~~~~~~~~~~~l~~--~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRE--LLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHH--HHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred cccccccccccccchh--hhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455667777776 5555 799999999999998877654332 8999999999988876654 578999999
Q ss_pred ChHhHHHHHHHhcCCCC--CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHHhhcccCCcccccccc
Q 044393 307 DQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWNVALDKLQNAKLDKIEGIDKDS 383 (513)
Q Consensus 307 ~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~ 383 (513)
+.++|++||.+.++... ..+..++.+++|+++|+|+||||.++|++|+.+ +..+|..+++++....... . ...
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~-~---~~~ 233 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRES-R---DYD 233 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS-S---GSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c---ccc
Confidence 99999999999987433 345557889999999999999999999999644 6678999999887754321 1 123
Q ss_pred ccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccc
Q 044393 384 LGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQ 434 (513)
Q Consensus 384 ~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~ 434 (513)
.++..++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++|++.
T Consensus 234 ~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 234 RSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 3799999999999999 9999999999999999999999999999999987
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-37 Score=348.50 Aligned_cols=303 Identities=21% Similarity=0.283 Sum_probs=231.0
Q ss_pred cccccccchhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE---cCCC--------
Q 044393 150 RFFSSFETTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV---SQDP-------- 216 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~-------- 216 (513)
..+..++|++..++++..++. .+++++|+|+||||+||||||+.+|+..... |+..+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhcccccc
Confidence 345668899999999988874 3457899999999999999999999987654 887776631 1110
Q ss_pred ---C-hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccC----CCCcEEEEEeCc
Q 044393 217 ---D-IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRL 288 (513)
Q Consensus 217 ---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~----~~~~~iivTtr~ 288 (513)
. ...+..+++..+....... .. ....+++ .+. ++|+||||||+|+...++.+... .+|++||||||+
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~-~~-~~~~~~~--~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK-IY-HLGAMEE--RLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc-cC-CHHHHHH--HHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 0 1223344444432211110 00 0123343 333 59999999999998877776432 239999999999
Q ss_pred hHHHhhcCCcceeecCCCChHhHHHHHHHhcCCCC-CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH
Q 044393 289 QQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDV-ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK 367 (513)
Q Consensus 289 ~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~ 367 (513)
..++...+..+.|+++.|+.++|++||+++|+... ++..+.+++++|+++|+|+||||+++|++|+.++..+|+.++++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998777778999999999999999999998543 34467889999999999999999999999999999999999999
Q ss_pred HhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHH
Q 044393 368 LQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRG 447 (513)
Q Consensus 368 l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~ 447 (513)
++.... ..+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+... ...
T Consensus 414 L~~~~~----------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~ 470 (1153)
T PLN03210 414 LRNGLD----------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNI 470 (1153)
T ss_pred HHhCcc----------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chh
Confidence 876431 158889999999998745899999999999886554 356777766433 112
Q ss_pred HHHHHhHccccceeCCCCcEEecHHHHHHHHHHhccc
Q 044393 448 TIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVE 484 (513)
Q Consensus 448 ~l~~L~~~sll~~~~~~~~~~mH~lv~~~a~~~~~~e 484 (513)
.++.|+++||++.. .++|.|||++|++|+.++.++
T Consensus 471 ~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 471 GLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred ChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhh
Confidence 48999999999764 367999999999999998654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=3.4e-14 Score=159.60 Aligned_cols=291 Identities=13% Similarity=0.177 Sum_probs=179.0
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc-CCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS-QDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~ 227 (513)
|......+-|...++.|... ...+++.|.||+|.||||++..+... +..+.|+++. .+.++..+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 33444566777666665432 23589999999999999999998753 2258899996 44566667677777
Q ss_pred HhCCCCCC--------------CCHHHHHHHHHHHHHhcc-CCeEEEEEecCCCccc------ccccccCCC-CcEEEEE
Q 044393 228 WLGWELKE--------------KDEEERADRLRLMFSESK-GRKILIILDDVWKELD------LETVGIPAN-CCKILLT 285 (513)
Q Consensus 228 ~l~~~~~~--------------~~~~~~~~~l~~~~~l~~-~~~~LlVLDd~~~~~~------~~~l~~~~~-~~~iivT 285 (513)
.++..... .+.......+.. .+.. +.+++|||||+....+ +..+....+ +.++|||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFI--ELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHH--HHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 66421111 111112222222 2322 5899999999966432 222222223 7889899
Q ss_pred eCchH-H--HhhcCCcceeecC----CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCCh
Q 044393 286 TRLQQ-V--CDRMGCDTRIKLD----ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNA 358 (513)
Q Consensus 286 tr~~~-v--~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~ 358 (513)
||... + ...........+. +|+.+|+.+||....+... ..+.+..|++.|+|.|+++..++..+.....
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 99742 1 1111112334555 8999999999998776432 2466789999999999999998877754321
Q ss_pred HHHHHHHHHHhhcccCCccccccccccccchh-hccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhccccccc
Q 044393 359 DEWNVALDKLQNAKLDKIEGIDKDSLGVYGCL-KFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAES 437 (513)
Q Consensus 359 ~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~ 437 (513)
. .......+.... ...+...+ ...+..||+ +.+.++..+|+++ .++.+.+-... |
T Consensus 235 ~-~~~~~~~~~~~~----------~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~l~---~------ 290 (903)
T PRK04841 235 S-LHDSARRLAGIN----------ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVRVT---G------ 290 (903)
T ss_pred c-hhhhhHhhcCCC----------chhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHHHc---C------
Confidence 0 011111110000 00233333 334789998 9999999999997 34433222111 1
Q ss_pred HHHHHHHHHHHHHHHhHccccc-eeC-CCCcEEecHHHHHHHHHHhc
Q 044393 438 IEKARSLLRGTIKGLKDSSLLL-DID-DDGFVKMHDIVRDVAIWIGK 482 (513)
Q Consensus 438 ~~~~~~~~~~~l~~L~~~sll~-~~~-~~~~~~mH~lv~~~a~~~~~ 482 (513)
.......+++|.+.+++. +.+ ...+|+.|++++++++....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 111244689999999965 333 33479999999999998763
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.44 E-value=1.9e-11 Score=126.46 Aligned_cols=290 Identities=16% Similarity=0.174 Sum_probs=186.2
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhC
Q 044393 152 FSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLG 230 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~ 230 (513)
...++-|...++.|.. ..+.+.+.|..|+|.|||||+.+.+..... -..+.|.+++. +.++..+...++..++
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 4556667655554443 235689999999999999999999884333 35688999874 5578888888888887
Q ss_pred CCCCCCCH--------------HHHHHHHHHHHHhc-cCCeEEEEEecCCCccc------ccccccCCC-CcEEEEEeCc
Q 044393 231 WELKEKDE--------------EERADRLRLMFSES-KGRKILIILDDVWKELD------LETVGIPAN-CCKILLTTRL 288 (513)
Q Consensus 231 ~~~~~~~~--------------~~~~~~l~~~~~l~-~~~~~LlVLDd~~~~~~------~~~l~~~~~-~~~iivTtr~ 288 (513)
...+...+ ..+.+.+.. .+. -.++..|||||..-..+ +.-+....+ +-.+|+|||+
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~--Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLN--ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHH--HHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 54333221 222233332 222 23689999999754332 333333333 8999999998
Q ss_pred hHHHhh--cC-CcceeecC----CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHH
Q 044393 289 QQVCDR--MG-CDTRIKLD----ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADE 360 (513)
Q Consensus 289 ~~v~~~--~~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~ 360 (513)
..-... +. ....+++. .|+.+|+.++|....+.+- .+..++.+.+..+|-+-|+..++=.++++ +.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 632211 11 11233332 4899999999998875332 24567899999999999999999888843 3221
Q ss_pred HHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHH
Q 044393 361 WNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEK 440 (513)
Q Consensus 361 w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~ 440 (513)
-...+....+ .+ ......--++.||+ ++|.+++-||+++. + .+.|+..-.+
T Consensus 246 ~~~~LsG~~~----~l---------~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f-~~eL~~~Ltg----------- 296 (894)
T COG2909 246 SLRGLSGAAS----HL---------SDYLVEEVLDRLPP-ELRDFLLQTSVLSR---F-NDELCNALTG----------- 296 (894)
T ss_pred HhhhccchHH----HH---------HHHHHHHHHhcCCH-HHHHHHHHHHhHHH---h-hHHHHHHHhc-----------
Confidence 1111110000 00 11234556788999 99999999999973 2 2233332111
Q ss_pred HHHHHHHHHHHHhHccccc-eeC-CCCcEEecHHHHHHHHHHhcc
Q 044393 441 ARSLLRGTIKGLKDSSLLL-DID-DDGFVKMHDIVRDVAIWIGKV 483 (513)
Q Consensus 441 ~~~~~~~~l~~L~~~sll~-~~~-~~~~~~mH~lv~~~a~~~~~~ 483 (513)
++.+...+++|.+++|+- +.+ +.++|+.|+|+.||.+.....
T Consensus 297 -~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 -EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 233445799999999985 333 567899999999999987654
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=2e-10 Score=110.02 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK 236 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 236 (513)
+....+..+...+..+ ...+.|+|++|+|||||++.+++...... + ...|+ +....+..+++..++..++.+....
T Consensus 27 ~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~ 102 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR 102 (269)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC
Confidence 3455566666555543 36899999999999999999998876431 1 12232 3334567788889998888765544
Q ss_pred CHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--cccccc---cCC--C--CcEEEEEeCchHHHhhcC---------
Q 044393 237 DEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETVG---IPA--N--CCKILLTTRLQQVCDRMG--------- 296 (513)
Q Consensus 237 ~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l~---~~~--~--~~~iivTtr~~~v~~~~~--------- 296 (513)
........+..++ ....+++.+||+||++... .++.+. ... . ...|++|.... +...+.
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 103 DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQ 181 (269)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHh
Confidence 4333333333322 2335688999999998753 222221 111 1 23455555432 221111
Q ss_pred -CcceeecCCCChHhHHHHHHHhcCC---CCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 297 -CDTRIKLDALDQAEGLDLLREHAGI---DVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 297 -~~~~~~l~~L~~~e~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
....+.+.+|+.++..+++...+.. .....-..+..+.|++.|+|.|..|..++..+
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1246789999999999999876641 11122346889999999999999999998876
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=3.7e-10 Score=114.45 Aligned_cols=287 Identities=14% Similarity=0.069 Sum_probs=170.6
Q ss_pred ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393 153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW 228 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (513)
..++||+.+++.|...+.+ +....+.|+|++|+|||++++.+++...........+++++....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 4477999999999888732 334678899999999999999999988765323445667777777788899999998
Q ss_pred hCCC-C--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc------ccccccc---CCC--CcEEEEEeCchHHHhh
Q 044393 229 LGWE-L--KEKDEEERADRLRLMFSESKGRKILIILDDVWKEL------DLETVGI---PAN--CCKILLTTRLQQVCDR 294 (513)
Q Consensus 229 l~~~-~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~------~~~~l~~---~~~--~~~iivTtr~~~v~~~ 294 (513)
+... . ...+..+....+.+.+.. .+++.+||||+++... .+..+.. ... +..+|.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDE-RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 8652 1 222344555555552222 2467899999997643 1222211 112 3346777776443322
Q ss_pred cC-------CcceeecCCCChHhHHHHHHHhcCCCC-CCCchHHHHHHHHHHh----CCCchHHHHHHHHhc-----CC-
Q 044393 295 MG-------CDTRIKLDALDQAEGLDLLREHAGIDV-ADTTLTDVSKRVADEC----KGLPLAIKVVGSALT-----GR- 356 (513)
Q Consensus 295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~G~PLai~~~~~~l~-----~~- 356 (513)
+. ....+.+.+++.++..+++..++.... ...-.++..+.|++.+ |..+.|+.++-.... +.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 11 124689999999999999988763211 1111234455555555 446667666543321 11
Q ss_pred --ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCC-CC-CCccCHHHHHHH--HHhh
Q 044393 357 --NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLF-PE-DYKIDLEDLLGY--AVGL 430 (513)
Q Consensus 357 --~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~f-p~-~~~i~~~~Li~~--w~a~ 430 (513)
+.+....+++.+.. ....-.+..||. +.|..+..++.. .. ...+....+... .+++
T Consensus 269 ~I~~~~v~~a~~~~~~-----------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 269 KVTEEDVRKAYEKSEI-----------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred CcCHHHHHHHHHHHHH-----------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 44555555554421 123446778997 666665544422 21 133555555432 2222
Q ss_pred cccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 431 VWYQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 431 g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
.+-. . .-.......+++.|...|+|...
T Consensus 331 ~~~~--~-~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGY--E-PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCC--C-cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1100 0 00234456789999999999853
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.32 E-value=9.3e-12 Score=116.48 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=102.8
Q ss_pred ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH---------
Q 044393 155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL--------- 225 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 225 (513)
|+||+.+++.|...+..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+...+.. .......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEES-NESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBS-HHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccch-hhhHHHHHHHHHHHHHH
Confidence 689999999999999887678999999999999999999999885431 1 22233222222 22222222
Q ss_pred -HHHhCCCCC-----------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-ccc----------ccccC---CCC
Q 044393 226 -VKWLGWELK-----------EKDEEERADRLRLMFSESKGRKILIILDDVWKEL-DLE----------TVGIP---ANC 279 (513)
Q Consensus 226 -~~~l~~~~~-----------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-~~~----------~l~~~---~~~ 279 (513)
...+....+ ..........+...+... +++.+||+||+.... ... .+... ..+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111211111 011122222232322222 355999999997665 211 11111 225
Q ss_pred cEEEEEeCchHHHhh--------cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 280 CKILLTTRLQQVCDR--------MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 280 ~~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
..+|+++.+..+... .+....+.+++|+.+++++++...+.....-+..++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 556666655544433 222345999999999999999987643211112366779999999999998864
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.24 E-value=1.1e-09 Score=106.87 Aligned_cols=271 Identities=14% Similarity=0.113 Sum_probs=146.7
Q ss_pred cccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 152 FSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
+..|+|++..++.|..++. .+....+.++||+|+|||+||+.+++..... + ...+.+..... ..+...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCc-hhHHHHH
Confidence 4568999999999988885 2335678999999999999999999987542 1 11221111111 1222333
Q ss_pred HHhCCCC-------CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-CcEEEEEeCchHHHhhc--C
Q 044393 227 KWLGWEL-------KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-CCKILLTTRLQQVCDRM--G 296 (513)
Q Consensus 227 ~~l~~~~-------~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-~~~iivTtr~~~v~~~~--~ 296 (513)
..++... ...+ ......+.. ...+.+..+|+++..+...+.. +.+ .+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~---~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYP---AMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhH---HHhhhheeeeeccCccccceee---cCCCeEEEEecCCccccCHHHHhh
Confidence 3332211 0011 111222332 2222445566666544433322 222 44555566654332221 1
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcccCCc
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKI 376 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~ 376 (513)
....+.+.+++.++..+++.+.++.... .-.++....|++.|+|.|-.+..++..+ |.... ......-..
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~--~~~~~~it~ 219 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ--VRGQKIINR 219 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH--HcCCCCcCH
Confidence 2356889999999999999988863322 2235678899999999997765555432 11100 000000000
Q ss_pred cccccccccccchhhccccCCCCccchHHHh-hhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHH-HHhH
Q 044393 377 EGIDKDSLGVYGCLKFSYDYLNGEDSRSCFL-LCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIK-GLKD 454 (513)
Q Consensus 377 ~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~-~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~ 454 (513)
+. -......+...|..|++ ..+..|. .++.++.+ .+..+.+.... | .....+...++ .|++
T Consensus 220 ~~----v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 220 DI----ALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred HH----HHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 00 00122225666788887 6666666 55667643 45544443221 1 11223344577 6999
Q ss_pred ccccceeC
Q 044393 455 SSLLLDID 462 (513)
Q Consensus 455 ~sll~~~~ 462 (513)
++||....
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99997443
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=5.5e-09 Score=104.73 Aligned_cols=286 Identities=17% Similarity=0.152 Sum_probs=166.4
Q ss_pred cccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcC-CC---CeEEEEEEcCCCChHHHHHHH
Q 044393 154 SFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IF---DEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i 225 (513)
.++||+.+++.|...+.. +....+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..+
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 577999999999888853 3346899999999999999999998875321 11 235677777777778899999
Q ss_pred HHHh---CCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----c-ccccccC-----C--CCcEEEEEeCc
Q 044393 226 VKWL---GWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKEL----D-LETVGIP-----A--NCCKILLTTRL 288 (513)
Q Consensus 226 ~~~l---~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----~-~~~l~~~-----~--~~~~iivTtr~ 288 (513)
+.++ +...+ ..+..+....+...+. ..+++++||||+++... + +..+... . .+..+|++|+.
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELN-ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 9888 33222 2233444444444222 23478999999997652 1 2222111 1 13456666665
Q ss_pred hHHHhhcC-------CcceeecCCCChHhHHHHHHHhcCC---C-CCCCchHHHHHHHHHHhCCCchHHHHHHHH-h---
Q 044393 289 QQVCDRMG-------CDTRIKLDALDQAEGLDLLREHAGI---D-VADTTLTDVSKRVADECKGLPLAIKVVGSA-L--- 353 (513)
Q Consensus 289 ~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~---~-~~~~~~~~~~~~i~~~~~G~PLai~~~~~~-l--- 353 (513)
......+. ....+.+.+++.++..+++..++.. . ...++..+.+..++..+.|.|-.+..+... .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43322111 1246889999999999999887641 1 112222234455666777988544332221 1
Q ss_pred -c-CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCC--CCCCccCHHHHHHH
Q 044393 354 -T-GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLF--PEDYKIDLEDLLGY 426 (513)
Q Consensus 354 -~-~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~f--p~~~~i~~~~Li~~ 426 (513)
. +. +.+....+.+.+.. ....-++..||. +.+.++..++.. .++..+....+...
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~-----------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK-----------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 1 11 34444544444321 123445677887 676655544321 13344666666653
Q ss_pred H--HhhcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 427 A--VGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 427 w--~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
+ +++. +.. ..-......++++.|...|||...
T Consensus 317 y~~~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCED-IGV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 1221 110 012235667789999999999754
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=4.5e-10 Score=110.38 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=149.5
Q ss_pred CccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
.|..+..|+|++..++.+...+. ....+.+.|+|++|+||||||+.+++..... + .+...+ .......+
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l 93 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDL 93 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHH
Confidence 45677889999999988877764 2334678999999999999999999987643 1 111111 11111223
Q ss_pred HHHHHHhCCCC-------CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-CcEEEEEeCchHHHhh
Q 044393 223 SELVKWLGWEL-------KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-CCKILLTTRLQQVCDR 294 (513)
Q Consensus 223 ~~i~~~l~~~~-------~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-~~~iivTtr~~~v~~~ 294 (513)
..++..+.... ...+ ....+.+.. ...+.+..+++|+..+...+.. ..+ .+-|..|++...+...
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~---~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLS-PVVEEILYP---AMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcc-hHHHHHHHH---HHHhcceeeeeccCccccceee---cCCCceEEeecCCcccCCHH
Confidence 33333332110 0000 111122222 1122444555555443322221 112 3445556664333222
Q ss_pred c--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 044393 295 M--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAK 372 (513)
Q Consensus 295 ~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~ 372 (513)
+ .....+.+.+++.++..+++.+.++..... -.++.+..|++.|+|.|-.+..+...+. .|.... ...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~----~~~ 236 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK----GDG 236 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc----CCC
Confidence 1 112568999999999999999887643222 2357789999999999976655554321 111100 000
Q ss_pred cCCccccccccccccchhhccccCCCCccchHHHh-hhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHH-
Q 044393 373 LDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFL-LCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIK- 450 (513)
Q Consensus 373 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~-~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~- 450 (513)
.+.. ..-......+...+..|++ ..+..+. .+..|+.+ .+..+.+.... + .....++ +.++
T Consensus 237 --~I~~--~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-g------~~~~~~~----~~~e~ 299 (328)
T PRK00080 237 --VITK--EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-G------EERDTIE----DVYEP 299 (328)
T ss_pred --CCCH--HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-C------CCcchHH----HHhhH
Confidence 0000 0001233445667778887 6666665 77778755 46666654322 1 1122222 2355
Q ss_pred HHhHccccceeC
Q 044393 451 GLKDSSLLLDID 462 (513)
Q Consensus 451 ~L~~~sll~~~~ 462 (513)
.|++.+|++...
T Consensus 300 ~Li~~~li~~~~ 311 (328)
T PRK00080 300 YLIQQGFIQRTP 311 (328)
T ss_pred HHHHcCCcccCC
Confidence 899999997544
No 12
>PF05729 NACHT: NACHT domain
Probab=99.19 E-value=2.9e-10 Score=100.28 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=89.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcCCCChH---HHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQDPDII---NVQSELVKWLGWELKEKDEEERADRLRL 247 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 247 (513)
+++.|+|.+|+||||+++.++......... ...+|.+........ .+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 578999999999999999999988776433 345566665444322 2333333333221111 1112222
Q ss_pred HHHhccCCeEEEEEecCCCccc-------------ccccccC--CCCcEEEEEeCchHH---HhhcCCcceeecCCCChH
Q 044393 248 MFSESKGRKILIILDDVWKELD-------------LETVGIP--ANCCKILLTTRLQQV---CDRMGCDTRIKLDALDQA 309 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~~~--~~~~~iivTtr~~~v---~~~~~~~~~~~l~~L~~~ 309 (513)
.....++++||||++++... +..+... .++.++++|||.... .........+.+.+|+++
T Consensus 76 --~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 --LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred --HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 23345899999999866533 2222222 348999999998655 334444468999999999
Q ss_pred hHHHHHHHhc
Q 044393 310 EGLDLLREHA 319 (513)
Q Consensus 310 e~~~lf~~~~ 319 (513)
+..+++.+.+
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.10 E-value=1e-09 Score=104.77 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=116.3
Q ss_pred cCCccccccccchhHHH---HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 146 MHIPRFFSSFETTKSAC---NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
+..|..+..++|.+..+ .-|...+..+.+.-..+|||+|+||||||+.+.+..... |..++...+-..-+
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl 89 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL 89 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH
Confidence 55677888888888766 346677788888899999999999999999999976644 34445444433444
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEE--EeCchHHHh---h
Q 044393 223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILL--TTRLQQVCD---R 294 (513)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iiv--Ttr~~~v~~---~ 294 (513)
+.+++.. ++ ....|++.+|++|++..-. +-+.+++... |.-++| ||.++.+.- .
T Consensus 90 r~i~e~a----------------~~--~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 90 REIIEEA----------------RK--NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHHH----------------HH--HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 4444321 11 2333699999999996542 3344444444 444444 666665421 1
Q ss_pred cCCcceeecCCCChHhHHHHHHHhcCCCC-----CCC-chHHHHHHHHHHhCCCchHHH
Q 044393 295 MGCDTRIKLDALDQAEGLDLLREHAGIDV-----ADT-TLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-----~~~-~~~~~~~~i~~~~~G~PLai~ 347 (513)
.+-..++.+++|+.++-..++.+.+.... ... -.++....|+..++|---++-
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 23347899999999999999998442111 111 225577888999999875443
No 14
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.04 E-value=4.3e-10 Score=115.30 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=86.2
Q ss_pred ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCCh------------
Q 044393 155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDI------------ 218 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~------------ 218 (513)
|.+....++.+...+..+ ..|+|+|++|+|||||.+.+.+....... -..+-..+++|..+.
T Consensus 331 y~~~~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 331 YDGGRLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred cCCCceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Confidence 334344566666666667 89999999999999999999777654311 111223333333311
Q ss_pred -------HHHHHHHHHHhCCCCCC-------CCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-----C
Q 044393 219 -------INVQSELVKWLGWELKE-------KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-----C 279 (513)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-----~ 279 (513)
....+..+..++.+... .+-.+....... .+.-.++-+||||+++|++|++.+..... .
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La--~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~ 486 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA--KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE 486 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH--HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC
Confidence 11222223333322111 111122222222 23334777999999999999877643322 8
Q ss_pred cEEEEEeCchHHHhhcCCcceeecCC
Q 044393 280 CKILLTTRLQQVCDRMGCDTRIKLDA 305 (513)
Q Consensus 280 ~~iivTtr~~~v~~~~~~~~~~~l~~ 305 (513)
+.||++||++.+.+.+. ...+.+++
T Consensus 487 Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 487 GTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred CeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 89999999999988875 45666654
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=1e-08 Score=112.00 Aligned_cols=302 Identities=18% Similarity=0.208 Sum_probs=174.6
Q ss_pred ccchhHHHHHHHHHHh---cCCccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCCChH---HHHHHHHH
Q 044393 155 FETTKSACNQITEALK---KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDPDII---NVQSELVK 227 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~---~~~~~i~~ 227 (513)
++||+.+++.|...+. ++...++.+.|.+|+|||+|++.|......+ +.|-...+-....+.... ..++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999988874 4566899999999999999999999988765 222111111112222211 12222222
Q ss_pred Hh-------------------CCCCC-----------------------CCCHHHHH-----HHHHHHHHhccCCeEEEE
Q 044393 228 WL-------------------GWELK-----------------------EKDEEERA-----DRLRLMFSESKGRKILII 260 (513)
Q Consensus 228 ~l-------------------~~~~~-----------------------~~~~~~~~-----~~l~~~~~l~~~~~~LlV 260 (513)
++ +.... +.....+. ..+.. .....++.++|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~--~~~~~~plVi~ 159 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQV--FTAEEHPLVIV 159 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHH--HHhccCCeEEE
Confidence 22 11100 00001111 11111 33445799999
Q ss_pred EecCCCcc-c----ccccccCC-------CCcEEEEEeCch--HHHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCC
Q 044393 261 LDDVWKEL-D----LETVGIPA-------NCCKILLTTRLQ--QVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADT 326 (513)
Q Consensus 261 LDd~~~~~-~----~~~l~~~~-------~~~~iivTtr~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~ 326 (513)
+||+...+ . +..+.... +....+.|.+.. ...........+.|.||+..+...+.....+....
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 99994332 1 11111111 022233333332 12222233478999999999999999999875332
Q ss_pred chHHHHHHHHHHhCCCchHHHHHHHHhcCC-------ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCC
Q 044393 327 TLTDVSKRVADECKGLPLAIKVVGSALTGR-------NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNG 399 (513)
Q Consensus 327 ~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~ 399 (513)
...+..+.|+++..|+|+.+..+-..+... ....|..-..++.... ..+ .+...+..-.+.||.
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~--------~~~-~vv~~l~~rl~kL~~ 308 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA--------TTD-AVVEFLAARLQKLPG 308 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch--------hhH-HHHHHHHHHHhcCCH
Confidence 235678999999999999999999988753 2334443332221111 111 244458888999998
Q ss_pred ccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHhHcccccee-----C-CCC-c-E-Eec
Q 044393 400 EDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDI-----D-DDG-F-V-KMH 470 (513)
Q Consensus 400 ~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~-~~~-~-~-~mH 470 (513)
..+..+...|++.. .|+...|...+-. ....++...++.|.....+-.. . ... . | ..|
T Consensus 309 -~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 -TTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred -HHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 89999999999964 4667777665521 2233334345555555444211 1 111 1 3 569
Q ss_pred HHHHHHHHHHhc
Q 044393 471 DIVRDVAIWIGK 482 (513)
Q Consensus 471 ~lv~~~a~~~~~ 482 (513)
++|++.|-....
T Consensus 376 ~~vqqaaY~~i~ 387 (849)
T COG3899 376 DRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHhccCc
Confidence 999999887553
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.00 E-value=4.9e-09 Score=106.26 Aligned_cols=180 Identities=15% Similarity=0.150 Sum_probs=110.3
Q ss_pred CccccccccchhHHHHH---HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQ---ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
.|..+..++|++..+.. |...+..+....+.|+|++|+||||||+.+++..... |+.++........++.
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLRE 79 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHH
Confidence 45566778898888666 8888888877889999999999999999999876532 2333322211112222
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEE--EeCchHH--Hhh-cC
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILL--TTRLQQV--CDR-MG 296 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iiv--Ttr~~~v--~~~-~~ 296 (513)
++.. ... ....+++.+|++||++... ..+.+..... +..+++ ||.+... ... ..
T Consensus 80 ii~~----------------~~~--~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 80 VIEE----------------ARQ--RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHH----------------HHH--hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhc
Confidence 2221 111 1223578899999997653 2222222222 444444 3343321 111 12
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCC-CCC-CchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGID-VAD-TTLTDVSKRVADECKGLPLAIKVVGSA 352 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~ 352 (513)
....+.+.+++.++...++.+.+... ... .-.++....|++.|+|.|..+..+...
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22678999999999999998865421 111 233677889999999999866544433
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91 E-value=2.6e-08 Score=92.51 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=92.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+.+.|+|++|+|||+|++.+++....+ ...+.|+.+.... ..... .+. .+ .
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~~~-------------------~~~---~~-~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFSPA-------------------VLE---NL-E 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhhHH-------------------HHh---hc-c
Confidence 3678999999999999999999987654 2334565543110 00000 111 11 1
Q ss_pred CCeEEEEEecCCCcc---cccc-ccc-----CCCCcEEEEE-eCc---------hHHHhhcCCcceeecCCCChHhHHHH
Q 044393 254 GRKILIILDDVWKEL---DLET-VGI-----PANCCKILLT-TRL---------QQVCDRMGCDTRIKLDALDQAEGLDL 314 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~---~~~~-l~~-----~~~~~~iivT-tr~---------~~v~~~~~~~~~~~l~~L~~~e~~~l 314 (513)
+.-+|+|||++... .|+. +.. ...++.+|++ ++. +.+...+.....+++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 34599999998642 2221 111 1125566554 443 34555555557899999999999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393 315 LREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351 (513)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 351 (513)
+++.+..... .-.++...-|++.+.|..-.+..+-.
T Consensus 170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9988863322 22367788899999887765544433
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=6e-08 Score=90.26 Aligned_cols=165 Identities=14% Similarity=0.098 Sum_probs=101.7
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK 236 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 236 (513)
+.+..++.+..++.......+.|+|++|+|||+||+.+++..... ....+++.++.-.. ....+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~---~~~~~----------- 84 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ---ADPEV----------- 84 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH---hHHHH-----------
Confidence 356677888887655556889999999999999999999887543 23344554332111 00000
Q ss_pred CHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---c-ccccc-----CCCCcEEEEEeCchH---------HHhhcCCc
Q 044393 237 DEEERADRLRLMFSESKGRKILIILDDVWKELD---L-ETVGI-----PANCCKILLTTRLQQ---------VCDRMGCD 298 (513)
Q Consensus 237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---~-~~l~~-----~~~~~~iivTtr~~~---------v~~~~~~~ 298 (513)
+ . .+ . +.-+|||||+..... + ..+.. ...+..+|+||+... +...+...
T Consensus 85 --------~-~--~~-~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 85 --------L-E--GL-E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred --------H-h--hc-c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 0 1 11 1 234899999965431 1 11211 112568888887532 22223223
Q ss_pred ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393 299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351 (513)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 351 (513)
..+++.+++.++...++...+.... ..-.++..+.|++.+.|+|..+..+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 6799999999999999887543211 122356778888889999887766544
No 19
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=2.2e-07 Score=99.02 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=111.7
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccE-EEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKM-VGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..+..|.+.+..++..- +.++|+.|+||||+|+.+++.+......... .+.. -.....+.
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~----C~sC~~i~ 83 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGV----CSSCVEIA 83 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCC----chHHHHHh
Confidence 34567778899999999999998877654 5899999999999999999887542111000 0000 00000000
Q ss_pred HHhC-----CCCC-CCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEeCc-hHHH
Q 044393 227 KWLG-----WELK-EKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~l~-----~~~~-~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTtr~-~~v~ 292 (513)
.... .... ....+.....+..+. .-..+++-++|||++.... .... +..+.++.++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 0000 0000 011111211111110 1123577899999996552 2222 2233446666666654 3333
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
..+ .....+++.+|+.++...++.+.+..+.. ....+.+..|++.++|.|--+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 12268999999999999999887653222 223567889999999998644433
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=98.76 E-value=3.9e-07 Score=94.30 Aligned_cols=182 Identities=20% Similarity=0.152 Sum_probs=110.2
Q ss_pred ccccccccchhHHHHHHHHHHhc---CC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKK---GS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~---~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
|..+..++|++...+.|..|+.. +. .+.+.|+|++|+||||+|+.+++... +. .+-++.+.... ...+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~-~~~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRT-ADVIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEccccccc-HHHHHH
Confidence 44566678999999998888853 22 57899999999999999999999874 32 22233333222 222333
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------cccccc--CCCCcEEEEEeCchH-HHh-h
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGI--PANCCKILLTTRLQQ-VCD-R 294 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~--~~~~~~iivTtr~~~-v~~-~ 294 (513)
++....... .+.+.++.+|||||++.... ...+.. ...+..||+|+.+.. ... .
T Consensus 84 ~i~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhh
Confidence 322211100 11212678999999976432 222211 122556777765432 111 1
Q ss_pred c-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 295 M-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 295 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
+ .....+.+.+++..+....+.+.+......- ..+....|++.++|..-.+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 2236789999999999988887764332222 25778999999999877655433333
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=2.3e-07 Score=97.05 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=114.0
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..++.|..++..+++ +.+.++|+.|+||||+++.+.+.+.....+.. .....-.....|.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 355677788999999999999988764 46689999999999999999887753211110 0000001111111
Q ss_pred HH-----hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEeCchH-HH
Q 044393 227 KW-----LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTTRLQQ-VC 292 (513)
Q Consensus 227 ~~-----l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTtr~~~-v~ 292 (513)
.. +... ......++....+.... .-..++.-++|||++..... +.. +..+..+.++|++|++.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 0000 00111222222222211 11224566899999976532 222 223334778888877643 32
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
..+ +-...+.+.+++.++..+.+.+.+..+...- ..+....|++.++|..- ++.++
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 1226799999999999999998876433222 25677889999998664 55543
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.74 E-value=6.8e-08 Score=90.90 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCccccccccchhHHHH---HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHH
Q 044393 147 HIPRFFSSFETTKSACN---QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQS 223 (513)
Q Consensus 147 ~~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (513)
..|.....++|.+..+. -|...+.++..+.+.+|||+|+||||||+.+....+... ..|+..|....-..-.+
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVR 207 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHH
Confidence 34555666777766553 355666788889999999999999999999998877653 34677666554444455
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc--ccccccccCCC-CcEEEE--EeCchHHHh---hc
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE--LDLETVGIPAN-CCKILL--TTRLQQVCD---RM 295 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~--~~~~~l~~~~~-~~~iiv--Ttr~~~v~~---~~ 295 (513)
.|+++.. +. ....++|.+|.+|++..- .+-+.+++... |.-++| ||.++.+.. .+
T Consensus 208 ~ife~aq----------------~~-~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 208 DIFEQAQ----------------NE-KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHH----------------HH-HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHH
Confidence 5554321 11 223349999999999543 33444444444 444443 677765422 12
Q ss_pred CCcceeecCCCChHhHHHHHHHhcC---C------CCCCC---chHHHHHHHHHHhCCCch
Q 044393 296 GCDTRIKLDALDQAEGLDLLREHAG---I------DVADT---TLTDVSKRVADECKGLPL 344 (513)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~---~------~~~~~---~~~~~~~~i~~~~~G~PL 344 (513)
..-.++.|++|+.++...++.+... . ..+++ -...+.+-++..|+|-.-
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 3337899999999999999887432 1 11121 124566778888888764
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.73 E-value=3.5e-07 Score=90.67 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=109.9
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHH---H
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQS---E 224 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~---~ 224 (513)
|..+..++|++..++.|..++..+..+.+.++|++|+||||+|+.+++.......-.....++++.... ....+. .
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 445666789999999999999888666889999999999999999998875432111223333322110 000000 0
Q ss_pred HHHHhCCC-CCCC-CHHHHHHHHHHHHHhc--cCCeEEEEEecCCCccc-----ccccc-cCCCCcEEEEEeCchH-HHh
Q 044393 225 LVKWLGWE-LKEK-DEEERADRLRLMFSES--KGRKILIILDDVWKELD-----LETVG-IPANCCKILLTTRLQQ-VCD 293 (513)
Q Consensus 225 i~~~l~~~-~~~~-~~~~~~~~l~~~~~l~--~~~~~LlVLDd~~~~~~-----~~~l~-~~~~~~~iivTtr~~~-v~~ 293 (513)
....++.. .... ........+....... .+.+-+||+||+..... +..+. ...+.+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 0000 0111111111110111 12455899999865421 22221 1223577887775432 222
Q ss_pred hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
.+ .....+.+.+++.++...++.+.+...... -..+.+..+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 122578889999999999998876432222 2367788899999888665443
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=3.5e-07 Score=94.43 Aligned_cols=198 Identities=19% Similarity=0.174 Sum_probs=113.3
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..++.|.+.+..++. +.+.++|+.|+||||+|+.+.+.+-....-... -. .+.....-.....|.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~-g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG-GI-TAQPCGQCRACTEID 88 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc-cC-CCCCCcccHHHHHHH
Confidence 355677788999999999999988865 456899999999999999999877532100000 00 000000001111111
Q ss_pred HH-----hCCCC-CCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCc-hHHH
Q 044393 227 KW-----LGWEL-KEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~-----l~~~~-~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~-~~v~ 292 (513)
.. +.... .....++..+.+..... -..++.-++|+|++.... . +..+..+.++..+|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 00000 11122333333332111 123467799999997653 2 2333333446676666665 3343
Q ss_pred hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
..+. -...+.+..++.++..+.+.+.+..+.... ..+....|++.++|.|.-...
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3221 126799999999999999988765332222 245668899999999974433
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6.6e-07 Score=89.10 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=107.9
Q ss_pred ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
|..+..++|.+..++.+...+..+.. +.+.++|+.|+||||+|+.+++.......... .+...-.....+..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 45566788999999999999987764 46789999999999999999987753211100 00000000111111
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEeCch-HHHh
Q 044393 228 WLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTTRLQ-QVCD 293 (513)
Q Consensus 228 ~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTtr~~-~v~~ 293 (513)
..... ......++....+.... .-..+++-++|+||+..... +.. +..+.+...+|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 00000 00011112111111100 11123567999999866532 222 22333366777766553 3332
Q ss_pred hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
.+ +....+++.+++.++..+.+...+..... .-.++.+..|++.++|.|-.+.
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 12267999999999999988876643221 1225677889999999886443
No 26
>PLN03025 replication factor C subunit; Provisional
Probab=98.72 E-value=5e-07 Score=88.49 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=107.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCC-eEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD-EVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..++.|..++..+..+.+.++|++|+||||+|..+++...... |. .+.-.+.+..... +..++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccH-HHHHHHH
Confidence 3555667788888899998888887777788999999999999999998874321 21 1111222221111 1222222
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccc-cccCCCCcEEEEEeCch-HHHhhc-CCc
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LET-VGIPANCCKILLTTRLQ-QVCDRM-GCD 298 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~-l~~~~~~~~iivTtr~~-~v~~~~-~~~ 298 (513)
+.+.... .....++.-+++|||+..... +.. +..+.+.+++|+++... .+...+ ...
T Consensus 86 ~~~~~~~---------------~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 86 KMFAQKK---------------VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHhcc---------------ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 2111000 011124567999999976532 211 11222356777776542 221111 112
Q ss_pred ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
..+++.+++.++....+...+..+...- .++....|++.++|..-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 5789999999999999888775332222 2567788999999876443
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=6.4e-07 Score=92.17 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=109.3
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+...+.|..++..+.. +.+.++|++|+||||+|+.+++.......+....|.|.+-. .+......-+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 345566778999999999999988764 45699999999999999999988753222211112111000 0000000000
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHHHhhc-C
Q 044393 227 KWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQVCDRM-G 296 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v~~~~-~ 296 (513)
..+... .....+...+ +...+. -..+++-++|+|+++... .+..+ ..+.++..+|++|.. ..+...+ .
T Consensus 88 ~el~~~-~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDAA-SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEeccc-ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 000000 0111122222 111111 112467799999997542 22222 222235566666654 3332222 2
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
....+++.+++.++..+.+.+.+....... ..+.+..|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 236799999999999999988775332222 2567889999999998644
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.68 E-value=8.2e-07 Score=87.28 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=107.3
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE--cCCCChHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV--SQDPDIINVQSELV 226 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~ 226 (513)
|..+..++|++..++.+..++..+..+.+.|+|++|+||||+++.+++...... +.. .++.+ +..... ....+.+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~-~~~~~~i 89 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGI-DVIRNKI 89 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccch-HHHHHHH
Confidence 345566789999999999999887767789999999999999999998875432 111 12222 121111 1111111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccccc-cCCCCcEEEEEeCch-HHHhhc-CCc
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETVG-IPANCCKILLTTRLQ-QVCDRM-GCD 298 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l~-~~~~~~~iivTtr~~-~v~~~~-~~~ 298 (513)
..+. .. .......+-++++|++..... +..+. .+.+.+.+|+++... .+...+ ...
T Consensus 90 ~~~~---------------~~-~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 90 KEFA---------------RT-APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHH---------------hc-CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1110 00 001112466999999865421 22221 222356777776532 111111 112
Q ss_pred ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
..+++.+++.++...++...+...... -.++.+..+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 468999999999999988877533222 225678899999999887543
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.8e-07 Score=93.01 Aligned_cols=192 Identities=19% Similarity=0.184 Sum_probs=111.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+...+.|..++..+.. +.+.++|+.|+||||+|+.+++.+........ .....-...+.+.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~-------~pCg~C~sC~~I~ 82 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS-------TPCEVCATCKAVN 82 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC-------CCCccCHHHHHHh
Confidence 356677788999999999999988764 57799999999999999999887643211100 0000000111111
Q ss_pred HHhCC-----C-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCchH-HH
Q 044393 227 KWLGW-----E-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRLQQ-VC 292 (513)
Q Consensus 227 ~~l~~-----~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~~~-v~ 292 (513)
..-.. . ......++....+...- .-..++.-++|+|++.... . +..+..+.++..+|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 00000 0 00111222222222110 1122467799999997543 1 222223334677888777632 22
Q ss_pred hh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 293 DR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 293 ~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
.. ......+++.+++.++....+.+.+..+...- ..+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 22 22236899999999999999988775432222 25677889999999885443
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.68 E-value=2.3e-07 Score=83.11 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=97.4
Q ss_pred cCCccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393 146 MHIPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN 220 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (513)
...|..+..|+|.++.++.+.-.+. ++...-+.++||+|+||||||..+++..... |. +. +.. .+.
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~--sg~-~i~- 87 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---IT--SGP-AIE- 87 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EE--ECC-C---
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---ec--cch-hhh-
Confidence 4567788899999998888765543 2346789999999999999999999998765 32 22 211 110
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc----cc-----------cC
Q 044393 221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET----VG-----------IP 276 (513)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~----l~-----------~~ 276 (513)
...++...+. .+ + ++-+|.+|++..... .+. +. ..
T Consensus 88 ----------------k~~dl~~il~---~l-~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 88 ----------------KAGDLAAILT---NL-K-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp ----------------SCHHHHHHHH---T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred ----------------hHHHHHHHHH---hc-C-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 0011111111 12 2 455788888854310 111 10 11
Q ss_pred CCCcE-EEEEeCchHHHhhcCCc--ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 277 ANCCK-ILLTTRLQQVCDRMGCD--TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 277 ~~~~~-iivTtr~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
.+..+ |=.|||...+...+... -..+++..+.+|-..+..+.+..-.. +-.++.+.+|++.|.|-|--..-+-...
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 11233 33577765554444332 34579999999999999887753222 2236789999999999998766655554
Q ss_pred c
Q 044393 354 T 354 (513)
Q Consensus 354 ~ 354 (513)
+
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 4
No 31
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=8.5e-07 Score=82.65 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCC
Q 044393 158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKD 237 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 237 (513)
....+..+..+......+.+.|+|+.|+|||+|++.+++..... ...+.++++..... .
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---~---------------- 87 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---F---------------- 87 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---h----------------
Confidence 34456666666555555789999999999999999999877643 23445555432100 0
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccc----cccC--CCC-cEEEEEeCch---------HHHhhcCCc
Q 044393 238 EEERADRLRLMFSESKGRKILIILDDVWKEL---DLET----VGIP--ANC-CKILLTTRLQ---------QVCDRMGCD 298 (513)
Q Consensus 238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~----l~~~--~~~-~~iivTtr~~---------~v~~~~~~~ 298 (513)
..+. .+ .+. +.-+|++||+.... .|+. +... ..| .++|+||+.. .+...+...
T Consensus 88 ~~~~----~~--~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g 159 (235)
T PRK08084 88 VPEV----LE--GME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred hHHH----HH--Hhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence 0011 11 111 22489999995431 2221 1111 123 4799999864 333445555
Q ss_pred ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
..+.+.+++.++-.+++.+++.... -.-.++...-|++.+.|..-.+..+-
T Consensus 160 ~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred ceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 7899999999999999988664322 22236788888988888666554443
No 32
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.7e-06 Score=85.52 Aligned_cols=197 Identities=17% Similarity=0.123 Sum_probs=113.6
Q ss_pred CCccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEE----EEEcCCCChHHH
Q 044393 147 HIPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGI----ATVSQDPDIINV 221 (513)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w----v~~~~~~~~~~~ 221 (513)
+.|......+|.+...+.|...+..+.. ..+.++|+.|+||+|+|..+++.+-.+........ .++... ..-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~ 91 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPV 91 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChH
Confidence 3556667788999999999999988864 46899999999999999999887743221100000 000000 00011
Q ss_pred HHHHHHHhCCC---------C------CCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCccc------ccccccCCC
Q 044393 222 QSELVKWLGWE---------L------KEKDEEERADRLRLMFS--ESKGRKILIILDDVWKELD------LETVGIPAN 278 (513)
Q Consensus 222 ~~~i~~~l~~~---------~------~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~~------~~~l~~~~~ 278 (513)
.+.+...-... . .....++..+ +...+. ...+.+.++|+|++..... +..+..+.+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111110000 0 0112233222 222221 1234677999999865532 222333444
Q ss_pred CcEEEEEeCchH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 279 CCKILLTTRLQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 279 ~~~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+..+|++|++.. +...+ .....+.+.+++.++..+++.+..+.. + .+....++..++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 677777887653 32222 223689999999999999998865321 1 2223678999999998665443
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=4.9e-06 Score=87.93 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=100.4
Q ss_pred cccchhHHHHHHHHHHhc----CC-ccEEEEEcCCCChHHHHHHHHHhHhhhc---CCCC--eEEEEEEcCCCChHHHHH
Q 044393 154 SFETTKSACNQITEALKK----GS-TKMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFD--EVGIATVSQDPDIINVQS 223 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~----~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~~ 223 (513)
.+.+|+.+++.|...|.. .. ..++.|+|++|+|||++++.+.+.+... .... .++++++..-.+...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 356899999999887743 22 2567899999999999999999877532 1122 355677666677888888
Q ss_pred HHHHHhCCCCCC--CCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc-----ccccc--cCCCCcEE--EEEeCchH
Q 044393 224 ELVKWLGWELKE--KDEEERADRLRLMFSE--SKGRKILIILDDVWKELD-----LETVG--IPANCCKI--LLTTRLQQ 290 (513)
Q Consensus 224 ~i~~~l~~~~~~--~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~-----~~~l~--~~~~~~~i--ivTtr~~~ 290 (513)
.|.+++....+. .........+.. .+ ..+...+|||||+..... +-.+. ....+++| |.+|.+..
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~--~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFN--QNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHh--hhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 888888443322 122233333332 22 122346999999965431 11111 11124444 44554322
Q ss_pred HH--------hhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393 291 VC--------DRMGCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 291 v~--------~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
+. ..+. ...+...|++.++-.+++..++.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 21 1121 23477799999999999998875
No 34
>PTZ00202 tuzin; Provisional
Probab=98.65 E-value=1.2e-06 Score=85.71 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=101.0
Q ss_pred cCCccccccccchhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 146 MHIPRFFSSFETTKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
...|.....|+||+.++..|...+... ..++++|+|++|+|||||++.+..... +. ..++ ...+..+++
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~v---Nprg~eElL 326 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFV---DVRGTEDTL 326 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEE---CCCCHHHHH
Confidence 345666778999999999999988642 246899999999999999999997654 11 2222 222679999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHH---HhccCCeEEEEEecCCCcccccc-----cccCCC--CcEEEEEeCchHHH
Q 044393 223 SELVKWLGWELKEKDEEERADRLRLMF---SESKGRKILIILDDVWKELDLET-----VGIPAN--CCKILLTTRLQQVC 292 (513)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~---~l~~~~~~LlVLDd~~~~~~~~~-----l~~~~~--~~~iivTtr~~~v~ 292 (513)
..++.+||.+.. ....++...+.+.+ ....|++.+||+-= .+...+.. +...+. -|.|++---.+.+.
T Consensus 327 r~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 327 RSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 999999997432 22233444444322 12225667776642 11111111 111222 56666654444332
Q ss_pred hhc---CCcceeecCCCChHhHHHHHHHhc
Q 044393 293 DRM---GCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 293 ~~~---~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
-.. .--..|.+++|+.++|.++.....
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 112568899999999998877655
No 35
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.5e-06 Score=84.87 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=106.3
Q ss_pred ccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhh----cCCCCeEEEEEE-cCCCChHHHHHHHH
Q 044393 153 SSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQ----EKIFDEVGIATV-SQDPDIINVQSELV 226 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~-~~~~~~~~~~~~i~ 226 (513)
...+|.+...+.|...+.++.. +...++|+.|+||||+|+.++..+-. ..|++...|... +....... .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3456888889999999987764 56789999999999999999987632 245555444332 11112111 22222
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc--ccc----cccccCCCCcEEEEEeCchHH-Hhhc-CCc
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE--LDL----ETVGIPANCCKILLTTRLQQV-CDRM-GCD 298 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~--~~~----~~l~~~~~~~~iivTtr~~~v-~~~~-~~~ 298 (513)
+.+.. .-..+++-++|+|++... ... ..+..|.+++.+|++|.+.+. ...+ +..
T Consensus 83 ~~~~~------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNK------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhc------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 22211 111235667777776443 222 233344458888888876532 2221 223
Q ss_pred ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
..+++.+++.++....+.+.... ...+.+..++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 68999999999998888776531 113457788999999987554
No 36
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.8e-06 Score=82.22 Aligned_cols=278 Identities=20% Similarity=0.221 Sum_probs=164.2
Q ss_pred ccchhHHHHHHHHHHh----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393 155 FETTKSACNQITEALK----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG 230 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (513)
+.+|+.+++++...+. .+.+.-+.|+|++|+|||+.++.+.........-..++++++....+...++..|++.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 5689999998887774 333445999999999999999999999876532233789999999999999999999995
Q ss_pred C-CCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccccc-----ccc-cCCC-Cc--EEEEEeCchHHHhh------
Q 044393 231 W-ELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLE-----TVG-IPAN-CC--KILLTTRLQQVCDR------ 294 (513)
Q Consensus 231 ~-~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~-----~l~-~~~~-~~--~iivTtr~~~v~~~------ 294 (513)
. +..+.+..+....+.+.+... ++.+++|||++....+-. .+. .+.. .+ -+|.++.+..+...
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~-~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKK-GKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhc-CCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 3 334455666666676644443 489999999997654321 221 1111 33 45555665443322
Q ss_pred --cCCcceeecCCCChHhHHHHHHHhcC----CCCCCCchHHHHHHHHHHhCCCc-hHHHHHHHHh--cCC------ChH
Q 044393 295 --MGCDTRIKLDALDQAEGLDLLREHAG----IDVADTTLTDVSKRVADECKGLP-LAIKVVGSAL--TGR------NAD 359 (513)
Q Consensus 295 --~~~~~~~~l~~L~~~e~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~l--~~~------~~~ 359 (513)
++. ..+...|-+.+|-.+++..++. .....+..-+.+..++..-+|-. .||..+-... +.. +.+
T Consensus 178 s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~ 256 (366)
T COG1474 178 SSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSED 256 (366)
T ss_pred hccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHH
Confidence 222 3478899999999999988774 22233343444455555555432 3333332222 110 222
Q ss_pred HHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHH--HHhhccccccc
Q 044393 360 EWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGY--AVGLVWYQAES 437 (513)
Q Consensus 360 ~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~--w~a~g~~~~~~ 437 (513)
.-..+..... ...+.-....||. +.|..+......- ..+....+-.. ++.+.+ ..
T Consensus 257 ~v~~a~~~~~-----------------~~~~~~~~~~L~~-~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~---~~ 313 (366)
T COG1474 257 HVREAQEEIE-----------------RDVLEEVLKTLPL-HQKIVLLAIVELT--VEISTGELYDVYESLCERL---RT 313 (366)
T ss_pred HHHHHHHHhh-----------------HHHHHHHHHcCCH-hHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh---Cc
Confidence 2222211111 1123334677887 7776655333221 22333333321 222211 01
Q ss_pred HHHHHHHHHHHHHHHhHccccce
Q 044393 438 IEKARSLLRGTIKGLKDSSLLLD 460 (513)
Q Consensus 438 ~~~~~~~~~~~l~~L~~~sll~~ 460 (513)
.......++++|...|++..
T Consensus 314 ---~~~~~~~ii~~L~~lgiv~~ 333 (366)
T COG1474 314 ---SQRRFSDIISELEGLGIVSA 333 (366)
T ss_pred ---hHHHHHHHHHHHHhcCeEEe
Confidence 34466678899999999964
No 37
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.1e-06 Score=84.33 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=116.2
Q ss_pred CCccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCC--CCeEEEEEEcCCCChHHHHH
Q 044393 147 HIPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKI--FDEVGIATVSQDPDIINVQS 223 (513)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 223 (513)
+.|..+...+|.+.....|...+.++.. +.+.|+|+.|+||||+|..+++.+-.... +... ............+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 4566777889999999999999988864 46999999999999999999988754210 1111 0000111111222
Q ss_pred HHHHHhC-------CC--------CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCc
Q 044393 224 ELVKWLG-------WE--------LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCC 280 (513)
Q Consensus 224 ~i~~~l~-------~~--------~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~ 280 (513)
.+...-. .+ ......++.. .+..++.. ..++.-++|+|++..... +..+..+..+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 2222100 00 0111223333 33333322 235677999999976532 22222333355
Q ss_pred EEEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 281 KILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 281 ~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
.+|++|+.. .+...+ +....+++.+++.++..+++.+..... . ..++.+..+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555543 332222 122689999999999999998743221 1 224567889999999998665443
No 38
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.62 E-value=1.7e-07 Score=87.37 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=64.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC--CChHHHHHHHHHHhCCCCCCCCHHH-------HHH
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD--PDIINVQSELVKWLGWELKEKDEEE-------RAD 243 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~ 243 (513)
..+.++|+|++|+|||||++.+++..... +|+...|+++... .++.++++.+...+-....+.+... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999999998776 8999999997776 6888888888332211111112211 122
Q ss_pred HHHHHHHhccCCeEEEEEecCCCc
Q 044393 244 RLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 244 ~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.... ....|++.+|++|++...
T Consensus 94 ~a~~--~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKR--LVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHH--HHHCCCCEEEEEECHHHh
Confidence 2222 223469999999998654
No 39
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=9.8e-07 Score=92.48 Aligned_cols=194 Identities=19% Similarity=0.173 Sum_probs=112.6
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..+..|...+..+... .+.++|+.|+||||+|+.+++.+.....+.. .....-.....|.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 3566777889999999999999887653 4689999999999999999887754211100 0000011111111
Q ss_pred HHhC-----CC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCc-hHHH
Q 044393 227 KWLG-----WE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~l~-----~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~-~~v~ 292 (513)
..-. .. ......++....+..+. .-..++.-++|+|++.... . +..+..+.+..++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000 00 00112222222222211 1123577799999996543 2 2223344446666666555 3333
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
..+ .-...+.+.+++.++....+.+.+..+.... ..+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 1236899999999999999988764322222 2566788999999988744433
No 40
>PRK08727 hypothetical protein; Validated
Probab=98.61 E-value=1.2e-06 Score=81.52 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=97.1
Q ss_pred cccccch-hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393 152 FSSFETT-KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG 230 (513)
Q Consensus 152 ~~~~~gr-~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (513)
+..|++. ...+..+...........+.|+|++|+|||+|++.+++.....+ ..+.|++..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhHH----
Confidence 4444432 23344433333333335799999999999999999998866542 3445554322 111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccc-ccc-----CCCCcEEEEEeCch---------HHH
Q 044393 231 WELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---DLET-VGI-----PANCCKILLTTRLQ---------QVC 292 (513)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~-l~~-----~~~~~~iivTtr~~---------~v~ 292 (513)
..+. .+ . +.-+||+||+.... .+.. +.. ...+..||+||+.. .+.
T Consensus 86 ------------~~~~---~l-~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ------------DALE---AL-E-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ------------HHHH---HH-h-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111 11 1 44599999986432 1111 111 11266799999852 223
Q ss_pred hhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 293 DRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 293 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
..+.....+++++++.++-.+++.+++..... .-.++....|++.++|..-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 33334468999999999999999987643221 222577788888888766555
No 41
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=9.4e-08 Score=92.21 Aligned_cols=285 Identities=22% Similarity=0.261 Sum_probs=177.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCC-CeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF-DEVGIATVSQDPDIINVQSELVKWLGWELKEK--DEEERADRLRLMFSE 251 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~~~l 251 (513)
+.+.++|+||+||||++-.+.. .... | +.+.++....-.+...+.-.....++...... ........+.
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~----- 86 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIG----- 86 (414)
T ss_pred heeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHh-----
Confidence 8999999999999999999988 4332 5 45556666665566666666666666654321 1122233222
Q ss_pred ccCCeEEEEEecCCCccc-----ccccccCCCCcEEEEEeCchHHHhhcCCcceeecCCCChH-hHHHHHHHhcCCCC--
Q 044393 252 SKGRKILIILDDVWKELD-----LETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQA-EGLDLLREHAGIDV-- 323 (513)
Q Consensus 252 ~~~~~~LlVLDd~~~~~~-----~~~l~~~~~~~~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~-- 323 (513)
+++.++++||.....+ +..+....+.-.++.|+|..... .......+.+|+.. ++.++|...+....
T Consensus 87 --~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 87 --DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred --hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 3999999999866543 33333444466788888865332 23456777777765 78899876653111
Q ss_pred --CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH-HhhcccCCccccccccccccchhhccccCCCCc
Q 044393 324 --ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK-LQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGE 400 (513)
Q Consensus 324 --~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~ 400 (513)
....-.....+|.++.+|.|++|...++..+.-...+....++. +..-. +.-......+......+.+||.-|..
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~-~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLT-GGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHh-cccccchhHHHhccchhhhhhHhhhh-
Confidence 11222567889999999999999999999987654433332221 11100 01111111123678889999999998
Q ss_pred cchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHhHccccceeC--CCCcEEecHHHHHHHH
Q 044393 401 DSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDID--DDGFVKMHDIVRDVAI 478 (513)
Q Consensus 401 ~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~~mH~lv~~~a~ 478 (513)
..+..|.-++.|...|.... ..|.+.|--. ....-.....+..|++.|++.-.+ ..-.|+.-+-+|.|+.
T Consensus 240 we~~~~~rLa~~~g~f~~~l----~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGL----ALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHHhcchhhhhhhhcccH----HHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 88999999999997765552 2444444211 112223333567888888885433 2224666666666666
Q ss_pred HHhc
Q 044393 479 WIGK 482 (513)
Q Consensus 479 ~~~~ 482 (513)
.+..
T Consensus 312 aeL~ 315 (414)
T COG3903 312 AELH 315 (414)
T ss_pred HHHH
Confidence 6554
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.8e-06 Score=89.10 Aligned_cols=182 Identities=20% Similarity=0.271 Sum_probs=108.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeE
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEV 207 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~ 207 (513)
.|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++.+.... .|...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 355677788999999999999988754 4578999999999999999998764311 11122
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--c----cccccCCCCcE
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--L----ETVGIPANCCK 281 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~----~~l~~~~~~~~ 281 (513)
+++.......+. -.+.++ ..+.. .-..+++-++|+||+..... . ..+..+.+...
T Consensus 91 ieidaas~~gvd-~ir~ii----------------~~~~~--~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGVE-ETKEIL----------------DNIQY--MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCHH-HHHHHH----------------HHHHh--hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 222211111111 111111 11111 11234677999999865432 2 22223333566
Q ss_pred EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
+|++|.+ ..+...+ .....+++.+++.++....+.+.+...... ..++....|++.++|.+- |+..+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655544 3333222 223689999999999988888765432222 225667889999999775 44444
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=2e-07 Score=78.60 Aligned_cols=112 Identities=24% Similarity=0.285 Sum_probs=77.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc---CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFDEVGIATVSQDPDIINVQSELVKWLGWELKE-KDEEERADRLRLMFS 250 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~ 250 (513)
+.+.|+|++|+|||++++.+....... ..-..++|+.++...+...+...++..++..... .+.......+.. .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~--~ 82 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID--A 82 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH--H
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH--H
Confidence 789999999999999999999987542 1124466888888878999999999999987766 556666677776 4
Q ss_pred hccCCeEEEEEecCCCc-c--cccccc--cCCCCcEEEEEeCc
Q 044393 251 ESKGRKILIILDDVWKE-L--DLETVG--IPANCCKILLTTRL 288 (513)
Q Consensus 251 l~~~~~~LlVLDd~~~~-~--~~~~l~--~~~~~~~iivTtr~ 288 (513)
+...+..+||+||+... . .++.+. ....+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 55545579999999764 2 122221 11337777777765
No 44
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.2e-06 Score=91.44 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=109.7
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++.+....... +..+... .....+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 356677788999999999999988764 4689999999999999999988764321110 0000000 0000000
Q ss_pred HH-----hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HH
Q 044393 227 KW-----LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VC 292 (513)
Q Consensus 227 ~~-----l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~ 292 (513)
.. +... ......+.....+.... .-..+++-++|+|++..... +..+..+.+.+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 0000 00111122222222110 11124677999999865432 222223334677777776532 22
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
..+ +....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+.-+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHH
Confidence 111 1125688899999999999988775433222 25678899999999986443
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=7.4e-07 Score=89.62 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=110.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++.+........ ..+..... ...+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~ 85 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT 85 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence 456677788999999999999988865 45899999999999999999987654311110 00111111 11111
Q ss_pred HHhCCCC------CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeC-chHHH
Q 044393 227 KWLGWEL------KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTR-LQQVC 292 (513)
Q Consensus 227 ~~l~~~~------~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr-~~~v~ 292 (513)
....... .....+........+. .-..++.-++|+|++.... .+..+ ..+.....+|++|. ...+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1110000 0111222222222111 1223567799999996542 22222 22333555554444 34443
Q ss_pred hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
..+. ....+.+.+++.++..+.+.+.+......- .++....|++.++|.+--
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHH
Confidence 3322 225799999999999999888765332222 256789999999999853
No 46
>PF14516 AAA_35: AAA-like domain
Probab=98.57 E-value=9.6e-06 Score=79.61 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=120.5
Q ss_pred cccccccchhHHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-----CChHHHHH
Q 044393 150 RFFSSFETTKSACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-----PDIINVQS 223 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 223 (513)
.+...+++|...-+.+...+.+ | ..+.|.||-.+|||||...+.+..... .+. .+++++... .+....++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G--~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG--SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC--CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHH
Confidence 4445577888677777777766 6 899999999999999999999888765 243 446665542 23444444
Q ss_pred HH----HHHhCCCCC--------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccccc----cc----------ccCC
Q 044393 224 EL----VKWLGWELK--------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLE----TV----------GIPA 277 (513)
Q Consensus 224 ~i----~~~l~~~~~--------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~----~l----------~~~~ 277 (513)
.+ .++++.... ..+.......+.+.+-...+++.+|+||+++...... .+ ....
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 44 444443321 0111222333333221222589999999997553211 11 0111
Q ss_pred C--CcEEEEEeCchH--HHhh-----cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 278 N--CCKILLTTRLQQ--VCDR-----MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 278 ~--~~~iivTtr~~~--v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
+ ..-.++..++.. .... +.....+.|.+|+.+|...|+.++-.. ......+.|...+||+|..+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHH
Confidence 1 222222222211 1111 122357899999999999998876422 1133489999999999999999
Q ss_pred HHHHhcCC
Q 044393 349 VGSALTGR 356 (513)
Q Consensus 349 ~~~~l~~~ 356 (513)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999764
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.5e-06 Score=87.14 Aligned_cols=185 Identities=19% Similarity=0.203 Sum_probs=107.7
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeE
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEV 207 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~ 207 (513)
.|..+..++|.+.....|...+..+.. +.+.++||+|+||||+|+.+++....... +...
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 456677788999888888888888765 45899999999999999999887643211 0011
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccccc----ccCCCCcE
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETV----GIPANCCK 281 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~ 281 (513)
..+..+....... .+.+... +.. .-..+++-++|+|++.... ....+ ..+.+...
T Consensus 89 ~el~aa~~~gid~-iR~i~~~----------------~~~--~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGIDE-IRKIRDA----------------VGY--RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHHH-HHHHHHH----------------Hhh--ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 1111111111111 1111111 110 1122467799999986442 11222 22223445
Q ss_pred EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHHH
Q 044393 282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGSA 352 (513)
Q Consensus 282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~~ 352 (513)
+|++|.+ ..+...+ .....+.+.+++.++....+.+.+..... .-.++....|++.++|. +.++..+-.+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4545443 3333332 22368899999999999998887743221 22256778899888655 5666666553
No 48
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.7e-06 Score=89.39 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=109.0
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeE
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEV 207 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~ 207 (513)
.|..+..++|.+..++.|..++..+..+ .+.++|+.|+||||+|+.+++.+-.... +..+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3566777889999999999999887654 5789999999999999999987743211 1112
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCc
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCC 280 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~ 280 (513)
+.+..+... ..++....+.... .-..++.-++|+|++.... . +..+..+.+.+
T Consensus 91 ~eidaas~~--------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 91 FEVDAASRT--------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEEcccccC--------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 222221111 1222222222110 1123466799999996542 1 22233344467
Q ss_pred EEEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 281 KILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 281 ~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
.+|++|.+. .+...+ +....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+.
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHH
Confidence 777666543 332222 12256889999999988877766643322222 4567789999999886443
No 49
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=96.97 Aligned_cols=141 Identities=22% Similarity=0.324 Sum_probs=84.5
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C---CCeEEEEEEcCCCChHH---HHH------
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I---FDEVGIATVSQDPDIIN---VQS------ 223 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~---~~~------ 223 (513)
|-...++.+.-.+..+ ..|+|+|.+|+|||||.+.+.+...... . -......+++|...... +..
T Consensus 14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~ 91 (530)
T COG0488 14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91 (530)
T ss_pred CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence 4455666666666677 8999999999999999999999886531 1 11122344555443221 111
Q ss_pred ---------------------------------------------HHHHHhCCCCCCC-----CH-HHHHHHHHHHHHhc
Q 044393 224 ---------------------------------------------ELVKWLGWELKEK-----DE-EERADRLRLMFSES 252 (513)
Q Consensus 224 ---------------------------------------------~i~~~l~~~~~~~-----~~-~~~~~~l~~~~~l~ 252 (513)
.++..++...... +. ......|.+ .+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~--aL~ 169 (530)
T COG0488 92 GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR--ALL 169 (530)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHH--HHh
Confidence 1122222221110 11 222333333 344
Q ss_pred cCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393 253 KGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 253 ~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
. ++=+|+||+++|++|++.+. ...+| .|||+||++.+.+.+.+ +++.+.
T Consensus 170 ~-~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t-~I~~ld 224 (530)
T COG0488 170 E-EPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVAT-HILELD 224 (530)
T ss_pred c-CCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhh-heEEec
Confidence 3 67799999999999976652 33446 99999999998887643 444443
No 50
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.8e-06 Score=84.74 Aligned_cols=172 Identities=15% Similarity=0.187 Sum_probs=103.2
Q ss_pred cccccchhHHHHHHHHHHhcCC----------ccEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------
Q 044393 152 FSSFETTKSACNQITEALKKGS----------TKMVGLHGLGGVGKTTLAKFVGNQLRQEK------------------- 202 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~~~~~~~~~~------------------- 202 (513)
+...+|.+..++.|...+..+. .+.+.++||+|+||||+|..++...-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3456788999999999997753 45688999999999999999987653321
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------cccccc
Q 044393 203 IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGI 275 (513)
Q Consensus 203 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~ 275 (513)
|.+ ..++.... .....++......... .-..+++-++|+|++..... +..+..
T Consensus 84 hpD-~~~i~~~~-------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPD-VRVVAPEG-------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCC-EEEecccc-------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 111 11111100 0111122222221100 11124566888899866532 222333
Q ss_pred CCCCcEEEEEeCch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 276 PANCCKILLTTRLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 276 ~~~~~~iivTtr~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
+.++..+|++|.+. .+...+. ....+.+.+++.++..+.+.+..+. ..+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 44466666666653 3433322 2368999999999999988754431 1456788999999999755443
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.7e-06 Score=89.02 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=110.5
Q ss_pred ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC--CeEEEEEEcCCCChHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF--DEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 225 (513)
|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++.+-..... ..... .....-.....|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 45677788999999999999988765 466899999999999999998776421100 00000 000111111111
Q ss_pred HHHhC-----CC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--c----cccccCCCCcEEEEEeCc-hHH
Q 044393 226 VKWLG-----WE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--L----ETVGIPANCCKILLTTRL-QQV 291 (513)
Q Consensus 226 ~~~l~-----~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~----~~l~~~~~~~~iivTtr~-~~v 291 (513)
...-. .. ......++..+.+.... .-..++.-++|||++..... . ..+..+.+...+|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 10000 00 00112222322222211 11124566999999976532 2 222233346666666544 333
Q ss_pred Hhh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 292 CDR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 292 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
... ......+++++++.++....+.+.+....... ..+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 322 22236899999999999999988775332222 256778899999998854443
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.8e-06 Score=86.47 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=109.5
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhc-------------------CCCCeE
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQE-------------------KIFDEV 207 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~ 207 (513)
.|..+..++|.+...+.|...+..+..+ .+.++|+.|+||||+|+.++..+-.. ..+..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3556777889999999999988887654 79999999999999999998754211 011112
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcE
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCK 281 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~ 281 (513)
+.++.+....+.+ .++++... .. .-..++.-++|+|++..... +..+..+.+...
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~----------------~~--~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENS----------------CY--LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHH----------------Hh--ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 2333222222111 12222111 10 11124667999999854422 222233444666
Q ss_pred EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
+|++|.. ..+...+ .....+.+.+++.++....+.+.+..+...- .++.+..|++.++|.+-.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 6666643 3443332 2236789999999999999988776433222 2566788999999988633
No 53
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=1.5e-06 Score=80.23 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=87.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+.+.|+|++|+|||+|++.++...... +++.. .....++. .+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~-------~i~~~------~~~~~~~~----------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL-------LIHPN------EIGSDAAN----------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE-------EecHH------HcchHHHH----------------------hhhc
Confidence 3679999999999999999888754221 33211 11111111 1111
Q ss_pred CCeEEEEEecCCCcc-ccccccc-----CCCCcEEEEEeCc---------hHHHhhcCCcceeecCCCChHhHHHHHHHh
Q 044393 254 GRKILIILDDVWKEL-DLETVGI-----PANCCKILLTTRL---------QQVCDRMGCDTRIKLDALDQAEGLDLLREH 318 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~-~~~~l~~-----~~~~~~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 318 (513)
-+|++||+.... +-..+.. ...|..+|+|++. +.+...+.....+++++++.++-.+++++.
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889996432 1111211 1127789998874 233444555678999999999999999988
Q ss_pred cCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393 319 AGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 351 (513)
+..... .-.+++..-|++.+.|..-++..+..
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 864322 22367888899999988777664333
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=4.3e-06 Score=85.79 Aligned_cols=194 Identities=16% Similarity=0.168 Sum_probs=110.2
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCCCChHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 225 (513)
.|..+...+|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.+........ ..+..+... .....+
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 455667788999999999988877753 57899999999999999999988753211100 000000000 000111
Q ss_pred HHHhCC------CCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEE-EeCchHH
Q 044393 226 VKWLGW------ELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILL-TTRLQQV 291 (513)
Q Consensus 226 ~~~l~~------~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iiv-Ttr~~~v 291 (513)
...... .......++....+.... .-..+++-++|+||++.... +..+ ..+.+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 000000 001112222222222211 11124677999999976422 2222 23333556555 4444444
Q ss_pred HhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 292 CDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 292 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
...+. ....+++.+++.++....+.+.+..+....+ .+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 43332 2257899999999999999988764332222 566788999999987533
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.51 E-value=1.2e-06 Score=93.62 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=100.8
Q ss_pred CccccccccchhHHHH---HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393 148 IPRFFSSFETTKSACN---QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
.|..+..++|.+..+. .|...+..+....+.++|++|+||||||+.+++..... | +.++..........+
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f-----~~lna~~~~i~dir~ 95 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--F-----SSLNAVLAGVKDLRA 95 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--c-----eeehhhhhhhHHHHH
Confidence 4566677889888774 56677777777788999999999999999999876432 3 111110000000011
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEEE--eCchH--HHhhc-C
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILLT--TRLQQ--VCDRM-G 296 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iivT--tr~~~--v~~~~-~ 296 (513)
........+... +++.+|+|||++... ....+..... +..++++ |.+.. +...+ .
T Consensus 96 ----------------~i~~a~~~l~~~-~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 96 ----------------EVDRAKERLERH-GKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ----------------HHHHHHHHhhhc-CCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111122 367899999996542 2233332223 4444443 33322 21211 1
Q ss_pred CcceeecCCCChHhHHHHHHHhcCC------CCCCCchHHHHHHHHHHhCCCchH
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGI------DVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
....+.+++++.++...++.+.+.. .....-.++....|++.+.|..-.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 2357999999999999999876641 111122356778899999887543
No 56
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=6.3e-06 Score=82.29 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=107.7
Q ss_pred ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeE
Q 044393 149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEV 207 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~ 207 (513)
|..+...+|.+..++.|..++..+.. +.+.++|++|+||||+|+.+........ +++.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 45566678999999999999987764 4678999999999999999988764321 1221
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--ccc----cccCCCCcE
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LET----VGIPANCCK 281 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~ 281 (513)
.++....... ....++++..+. . .-..+++-++|+|++..... ... +..+.+...
T Consensus 89 ~~~~~~~~~~-~~~~~~l~~~~~----------------~--~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 IEIDAASNNG-VDDIREILDNVK----------------Y--APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEeeccccCC-HHHHHHHHHHHh----------------c--CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1221111111 111122222111 0 11123566899999854421 222 222233666
Q ss_pred EEEEeCchH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 282 ILLTTRLQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 282 iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+|++|.+.. +...+ .....+++.+++.++..+++...+...... -.++.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 677765543 22222 223578899999999999988766422211 125678889999999987665443
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=8.9e-07 Score=75.90 Aligned_cols=117 Identities=20% Similarity=0.127 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK 236 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 236 (513)
|++..+..+...+.......+.|+|++|+|||||++.+++..... -..++++..++..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 677888888888877555899999999999999999999988532 2334555544433222111111000
Q ss_pred CHHHHHHHHHHHHHhccCCeEEEEEecCCCc-----ccccc----cccC---CCCcEEEEEeCch
Q 044393 237 DEEERADRLRLMFSESKGRKILIILDDVWKE-----LDLET----VGIP---ANCCKILLTTRLQ 289 (513)
Q Consensus 237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~-----~~~~~----l~~~---~~~~~iivTtr~~ 289 (513)
....... .....++.+|++||++.. ..+.. +... ..+..+|+||...
T Consensus 72 ----~~~~~~~--~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----LVRLLFE--LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----hHhHHHH--hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111 122237789999999853 11111 1111 2477888888864
No 58
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.51 E-value=1.5e-07 Score=86.89 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe------------EEEEEEcCCC-----
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE------------VGIATVSQDP----- 216 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~------------~~wv~~~~~~----- 216 (513)
+....++.+...+.++ .+++|+||+|+|||||.+.+++-.+.... .+. ....+++|..
T Consensus 13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 3444566666666677 89999999999999999999987764210 000 0111222211
Q ss_pred ---------------------C--hHHHHHHHHHHhCCC------CCCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCC
Q 044393 217 ---------------------D--IINVQSELVKWLGWE------LKEKDEEE-RADRLRLMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 217 ---------------------~--~~~~~~~i~~~l~~~------~~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~ 266 (513)
+ -.......++.++.. ....+..+ ....+.. .+.+ +.-+|+||++.+
T Consensus 91 ~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr--ALaQ-~~~iLLLDEPTs 167 (258)
T COG1120 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR--ALAQ-ETPILLLDEPTS 167 (258)
T ss_pred cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH--HHhc-CCCEEEeCCCcc
Confidence 0 011233334444332 11222222 2233333 4444 777999999999
Q ss_pred cccccccc------c--C-CCCcEEEEEeCchHHHhhcC
Q 044393 267 ELDLETVG------I--P-ANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 267 ~~~~~~l~------~--~-~~~~~iivTtr~~~v~~~~~ 296 (513)
.+|+..-. . . ..|..||+++|+.+.+...+
T Consensus 168 ~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 98854421 1 1 22789999999998887653
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.50 E-value=4.6e-07 Score=88.08 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=64.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC--ChHHHHHHHHHHhCCCCCCCCHHHH-------H
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP--DIINVQSELVKWLGWELKEKDEEER-------A 242 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-------~ 242 (513)
+..+...|+|++|+|||||++.+++..... +|+...|+.+.+.. .+.++++++...+-......+.... .
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 344899999999999999999999999876 89999999998887 6677777775322111122222111 1
Q ss_pred HHHHHHHHhccCCeEEEEEecCCCc
Q 044393 243 DRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 243 ~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
+.... +. ..|+++||++|++...
T Consensus 246 e~Ae~-~~-e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKR-LV-EHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHH-HH-HcCCCEEEEEEChHHH
Confidence 12222 12 3569999999998543
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.6e-06 Score=86.70 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=106.5
Q ss_pred ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeEE
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEVG 208 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 208 (513)
|..+..++|.+..++.|..++..+... .+.++|+.|+||||+|+.++..+-.... |...+
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 456677889999999999999887654 5689999999999999999887643211 11111
Q ss_pred EEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcE
Q 044393 209 IATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCK 281 (513)
Q Consensus 209 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~ 281 (513)
++..+. ....++....+.... .-..+++-++|+|++..... +..+..+.+...
T Consensus 92 ei~~~~--------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 92 EVDAAS--------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred Eeeccc--------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 221111 111122222222110 11124677999999975532 222333334666
Q ss_pred EEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 282 ILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 282 iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
+|++|.+. .+...+ .....+++.+++.++....+.+.+..+.... .++.+..|++.++|.+-
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 66666543 222111 1125789999999999988887764322222 25667889999999885
No 61
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=4.6e-07 Score=75.95 Aligned_cols=115 Identities=24% Similarity=0.194 Sum_probs=71.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
+++.|.|+.|+|||||+++++.... ....+++++............ +....+.+ . ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~--~-~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLE--L-IKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHH--h-hcc
Confidence 7899999999999999999998876 123455665444322110000 01122222 2 223
Q ss_pred CeEEEEEecCCCccccccccc----CCCCcEEEEEeCchHHHhh-----c-CCcceeecCCCChHhH
Q 044393 255 RKILIILDDVWKELDLETVGI----PANCCKILLTTRLQQVCDR-----M-GCDTRIKLDALDQAEG 311 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l~~----~~~~~~iivTtr~~~v~~~-----~-~~~~~~~l~~L~~~e~ 311 (513)
++.+++||++....+|..... ..++.+|++|+.+...... + +....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 778999999988877665432 1236899999997655422 1 1224689999998763
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=1.6e-06 Score=77.76 Aligned_cols=51 Identities=24% Similarity=0.392 Sum_probs=35.1
Q ss_pred cccchhHHHHHHHHHH---hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC
Q 044393 154 SFETTKSACNQITEAL---KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF 204 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l---~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f 204 (513)
.|+||+.+++.+...+ ..+..+.+.|+|++|+|||+|++.++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 4789999999999999 23346899999999999999999999998876333
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.4e-06 Score=84.23 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=109.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE-EcCCCChHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT-VSQDPDIINVQSEL 225 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 225 (513)
.|..+..++|.+...+.|..++.++..+ .+.++||.|+||||+|..+++.......+....|.. .......-.....+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 3456677889999999999999887654 588999999999999999998875432111111100 00000000111111
Q ss_pred HHHhCCC-----C-CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEe-CchHH
Q 044393 226 VKWLGWE-----L-KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTT-RLQQV 291 (513)
Q Consensus 226 ~~~l~~~-----~-~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTt-r~~~v 291 (513)
....... . .....++..+....+. .-..+++-++|+||+.... .+.. +..+.+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1100000 0 0111222222222110 1122466789999986543 2222 22333466666555 33333
Q ss_pred HhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 292 CDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 292 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
...+. ....+++.+++.++....+...+..... .-..+.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 32221 1257889999999999888877643221 1226778999999999886443
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.7e-06 Score=86.22 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=108.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|++..++.|...+..+.. +.+.++||.|+||||+|+.+++.+........ . ....-.....+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~------~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG------D-CCNSCSVCESIN 83 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------C-CCcccHHHHHHH
Confidence 355677788999999999999977654 46889999999999999999988753221110 0 001111111111
Q ss_pred HHhCCC------CCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHH
Q 044393 227 KWLGWE------LKEKDEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQV 291 (513)
Q Consensus 227 ~~l~~~------~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v 291 (513)
...... ......++....+.... ... +++-++|+|++.... ....+ ..+.+...+|++|.. ..+
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~-~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT-FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhh-CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 110000 00011122222221111 112 244579999986532 22222 223335555555543 333
Q ss_pred Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393 292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG 350 (513)
Q Consensus 292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 350 (513)
...+ .....+++.+++.++....+...+......- ..+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3222 2236799999999999998888664322111 25667889999999765 444433
No 65
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.43 E-value=1.5e-05 Score=75.04 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHHHHHHhCC
Q 044393 159 KSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSELVKWLGW 231 (513)
Q Consensus 159 ~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (513)
...++.|...+... ..+-+.|+|.+|.|||++++.+......... --.++.+.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 45677777777543 3467999999999999999999987754311 1246777888999999999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccccCCC---CcEEEEEeCc--------hH
Q 044393 232 ELKEK-DEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVGIPAN---CCKILLTTRL--------QQ 290 (513)
Q Consensus 232 ~~~~~-~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~~~~~---~~~iivTtr~--------~~ 290 (513)
+.... ...........++.. -+--+||+|++.+.+. +..+....+ =+-|.+-|+. .+
T Consensus 123 P~~~~~~~~~~~~~~~~llr~--~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRR--LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHH--cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 87543 334444444443322 2555999999966432 122211112 3344455543 22
Q ss_pred HHhhcCCcceeecCCCChHh-HHHHHHHhc---C-CCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 291 VCDRMGCDTRIKLDALDQAE-GLDLLREHA---G-IDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 291 v~~~~~~~~~~~l~~L~~~e-~~~lf~~~~---~-~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
.++.+ ..+.+.....++ ...|+...- . .....-...+++..|+..++|+.--+..+-
T Consensus 201 La~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 201 LASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 33322 456666655443 444543322 2 111223347889999999999876554443
No 66
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=86.49 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=80.1
Q ss_pred cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcC---------------
Q 044393 154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQ--------------- 214 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~--------------- 214 (513)
+|.+.--....+...+..+ ..|+++||+|+|||||.+.++.+..+...- ....+....|
T Consensus 398 ~y~~~~~iy~~l~fgid~~--srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 398 GYSDNPMIYKKLNFGIDLD--SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred CCCCcchhhhhhhcccCcc--cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 3433334556666655556 899999999999999999999988653100 0001111111
Q ss_pred ------CCChHHHHHHHHHHhCCCCCCC-------CHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCC---C
Q 044393 215 ------DPDIINVQSELVKWLGWELKEK-------DEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA---N 278 (513)
Q Consensus 215 ------~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~---~ 278 (513)
+....+..+.++..++...... +..+....+..+ ... ..+-|||||++.++.|+..+-... +
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~-l~~-kqP~lLlLDEPtnhLDi~tid~laeaiN 553 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFAR-LAV-KQPHLLLLDEPTNHLDIETIDALAEAIN 553 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHH-HHh-cCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence 0123345556666666543221 222222233321 222 377899999999999987764222 2
Q ss_pred --CcEEEEEeCchHHHhh
Q 044393 279 --CCKILLTTRLQQVCDR 294 (513)
Q Consensus 279 --~~~iivTtr~~~v~~~ 294 (513)
.+.||++||+-.+...
T Consensus 554 e~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 554 EFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred ccCCceeeeechhhHHHH
Confidence 6778889998655443
No 67
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.8e-06 Score=88.67 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=107.7
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..++.|...+..+... .+.++|+.|+||||+|+.+++.+......... .+... .....+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 3456677889999999999999887654 57899999999999999998887532111000 00000 0000000
Q ss_pred HH-------hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc-----c-cccccCCCCcEEEEEeCc-hH
Q 044393 227 KW-------LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD-----L-ETVGIPANCCKILLTTRL-QQ 290 (513)
Q Consensus 227 ~~-------l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~~~~~~iivTtr~-~~ 290 (513)
.. +... ......++......... .-..++.-++|||++..... + ..+..+...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 0000 00011222222211111 12234666899999866531 2 222233336666665544 34
Q ss_pred HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
+...+. ....|++..++.++...++.+.+..+.... ..+....|++.++|.+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 443332 236899999999999988888764322222 245668899999998843
No 68
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.1e-05 Score=84.05 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=111.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+...+.|...+.++. .+.+.++|+.|+||||+|+.+++.+-........ ..+.-...+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~ 83 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVT 83 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHh
Confidence 34556677898989999999998875 4678899999999999999999887532111000 000001111111
Q ss_pred HHhCCC------CCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHH
Q 044393 227 KWLGWE------LKEKDEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQV 291 (513)
Q Consensus 227 ~~l~~~------~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v 291 (513)
...... ......++... +.+.+ .-..+++-++|+|++.... ....+ ..+.+...+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 100000 00011111111 11111 1122467799999996552 12222 223335666665654 333
Q ss_pred Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 044393 292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP-LAIKVVGSAL 353 (513)
Q Consensus 292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~l 353 (513)
...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+ .|+..+..++
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 122578999999999999988766432211 22567888999999966 5666665444
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.38 E-value=1.1e-05 Score=74.32 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=91.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|+.|+|||.|++.+++.......-..+++++ ..+....+...+.. .... .+.. .+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~~----~~~~--~~~-- 96 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD----GEIE----EFKD--RLR-- 96 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSHH----HHHH--HHC--
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----ccch----hhhh--hhh--
Confidence 5789999999999999999999886542223344553 33444455444322 1111 1222 222
Q ss_pred CeEEEEEecCCCccc---ccc-ccc-----CCCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKELD---LET-VGI-----PANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~---~~~-l~~-----~~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
.-=+|++||+..... ++. +.. ...|.++|+|++.. .+...+...-.+++++++.++..+++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 344899999965432 211 111 11278999999752 334445555789999999999999999
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
+.+...... -.++++.-|++.+.+..-.+..+
T Consensus 177 ~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 177 KKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 888533222 33677788888877655544433
No 70
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.38 E-value=6.6e-06 Score=76.51 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH
Q 044393 160 SACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE 238 (513)
Q Consensus 160 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 238 (513)
..+..+..+... .....+.|+|+.|+|||+||+.+++...... . ...+++..... .. +
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~----~--------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LA----F--------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HH----H---------
Confidence 444555555442 2346899999999999999999998764331 2 23344332210 00 0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCCCccccc--cc---ccC--CCCc-EEEEEeCchHHH--------hhcCCcceee
Q 044393 239 EERADRLRLMFSESKGRKILIILDDVWKELDLE--TV---GIP--ANCC-KILLTTRLQQVC--------DRMGCDTRIK 302 (513)
Q Consensus 239 ~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~--~l---~~~--~~~~-~iivTtr~~~v~--------~~~~~~~~~~ 302 (513)
. .. . ..-+|++||+....... .+ ... ..+. .+|+|++..... ..+.....++
T Consensus 86 --------~--~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~ 153 (227)
T PRK08903 86 --------D--FD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE 153 (227)
T ss_pred --------h--hc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence 0 11 1 33478999996542211 11 111 1133 366666643221 1222236889
Q ss_pred cCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 303 LDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 303 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
+.+++.++-..++.+.+.... -.-.++....+++.+.|++..+..+...+
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999887777776543221 12235778889999999999887666554
No 71
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.38 E-value=1e-06 Score=77.73 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-------------------EEcC
Q 044393 154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-------------------TVSQ 214 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-------------------~~~~ 214 (513)
..+|....++.+.-.+.++ .+++|+||+|+|||||.+.+..-...+. +.+++ -|-|
T Consensus 10 K~fg~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred EEeCCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCeecc
Confidence 3445555666666666677 8999999999999999999987666531 12222 1223
Q ss_pred CCChH---HHHH----------------------HHHHHhCCCCC-----C--CCHHHHHHHHHHHHHhccCCeEEEEEe
Q 044393 215 DPDII---NVQS----------------------ELVKWLGWELK-----E--KDEEERADRLRLMFSESKGRKILIILD 262 (513)
Q Consensus 215 ~~~~~---~~~~----------------------~i~~~l~~~~~-----~--~~~~~~~~~l~~~~~l~~~~~~LlVLD 262 (513)
.++++ .++. +++..++.... . ..-.+..-.+.. .+.- ++-++.+|
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR--ALaM-~P~vmLFD 161 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR--ALAM-DPKVMLFD 161 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH--HHcC-CCCEEeec
Confidence 33221 1111 22222222110 0 011111222222 4444 66699999
Q ss_pred cCCCccccccccc--------CCCCcEEEEEeCchHHHhhcC
Q 044393 263 DVWKELDLETVGI--------PANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 263 d~~~~~~~~~l~~--------~~~~~~iivTtr~~~v~~~~~ 296 (513)
++++.+|.+-+.. ...|.+.|++||.-.+|..+.
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 9999988665432 223899999999988887763
No 72
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.37 E-value=1.4e-05 Score=71.89 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=91.0
Q ss_pred HHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhc--------------------CCCCeEEEEEEcCCCChHHHH
Q 044393 164 QITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQE--------------------KIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 164 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~ 222 (513)
.|.+.+.++.. +.+.++|+.|+||||+|+.+....... .+.+. .++.........+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566666655 679999999999999999998887542 11111 121111110011111
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeCch-HHHhhc
Q 044393 223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTRLQ-QVCDRM 295 (513)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr~~-~v~~~~ 295 (513)
+++++.+.. .-..+.+-++|+||+..... .. .+..+.+.+.+|++|++. .+...+
T Consensus 82 ~~i~~~~~~------------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 RELVEFLSR------------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHcc------------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 122221110 11124677999999865422 11 222333366777777653 222222
Q ss_pred -CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 296 -GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 296 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
.....+.+.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g---i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G---I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C---C---CHHHHHHHHHHcCCCccc
Confidence 12268999999999999999886 2 1 146788999999998863
No 73
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.36 E-value=2.7e-05 Score=77.13 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+..+...+..+ ..++|+||+|+|||||++.+..-...
T Consensus 349 ~pil~~isF~l~~G--~~lgIIGPSgSGKSTLaR~lvG~w~p 388 (580)
T COG4618 349 KPILKGISFALQAG--EALGIIGPSGSGKSTLARLLVGIWPP 388 (580)
T ss_pred CcceecceeEecCC--ceEEEECCCCccHHHHHHHHHccccc
Confidence 45667778888888 89999999999999999999877654
No 74
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=6.6e-07 Score=86.27 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=80.4
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc------CCCCeEEEEEE------cCCCCh
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE------KIFDEVGIATV------SQDPDI 218 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~~~wv~~------~~~~~~ 218 (513)
...+|.|.+..+..+..-+.-+ +.|+|+||+|+|||||.+.+...+.+. .|--.+-|..- ....++
T Consensus 592 VtFgy~gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp 669 (807)
T KOG0066|consen 592 VTFGYPGQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETP 669 (807)
T ss_pred ccccCCCCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCH
Confidence 3445667777777777666555 899999999999999999999887653 11111223321 111122
Q ss_pred HHHHHH-----------HHHHhCCCCC-------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCC---
Q 044393 219 INVQSE-----------LVKWLGWELK-------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA--- 277 (513)
Q Consensus 219 ~~~~~~-----------i~~~l~~~~~-------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~--- 277 (513)
.+.+.. -+-.++.... ..+..+....... .+.-+.+-+||||++.+.+|++.+-...
T Consensus 670 ~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala--eLal~~PDvlILDEPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 670 VEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA--ELALGGPDVLILDEPTNNLDIESIDALAEAI 747 (807)
T ss_pred HHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH--HHhcCCCCEEEecCCCCCcchhhHHHHHHHH
Confidence 221111 1111121111 0111111111111 2333467799999999999988774322
Q ss_pred C--CcEEEEEeCchHHHhhcCC
Q 044393 278 N--CCKILLTTRLQQVCDRMGC 297 (513)
Q Consensus 278 ~--~~~iivTtr~~~v~~~~~~ 297 (513)
+ .+-||++||++.+....++
T Consensus 748 ney~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 748 NEYNGGVIMVSHDERLIVETDC 769 (807)
T ss_pred HhccCcEEEEecccceeeecCc
Confidence 2 6778888998876554433
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.2e-05 Score=84.27 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=112.9
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe--EEEEEEcCCCChHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE--VGIATVSQDPDIINVQSE 224 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~ 224 (513)
.|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++.+........ ..+- ....-...+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 356677788999999999999988864 46899999999999999999987753311100 0000 0000111122
Q ss_pred HHHHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeC-chH
Q 044393 225 LVKWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTR-LQQ 290 (513)
Q Consensus 225 i~~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr-~~~ 290 (513)
|....... ......++....+.... .-..+++-++|+|++..... .. .+..+.+++.+|++|. ...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22111110 01112223222222110 11123566899999855431 22 2223444667666554 333
Q ss_pred HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
+...+. ....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 332221 226789999999999999988765332222 2467788999999998755433
No 76
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.7e-05 Score=79.47 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=103.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC------CCCeEEEEEEcCCC-ChH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK------IFDEVGIATVSQDP-DII 219 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~------~f~~~~wv~~~~~~-~~~ 219 (513)
.|..+..++|.+...+.+...+..+.. +.+.++|+.|+||||+|+.+.+...... .|...+ +...... ...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 90 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV 90 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH
Confidence 345566778999999999999988764 4788999999999999999988765321 111111 1111100 001
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeC-chHHH
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTR-LQQVC 292 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr-~~~v~ 292 (513)
+...++++.+... ... +++-++++||+..... +..+ ..+.+.+.+|++|. ...+.
T Consensus 91 ~~i~~l~~~~~~~-----------------p~~-~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 DDIRNLIDQVRIP-----------------PQT-GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HHHHHHHHHHhhc-----------------ccc-CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1122222211100 112 3566899999864322 2222 12222455555553 32222
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
..+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 221 222578999999999998888766432221 12577888999999876633
No 77
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=2.7e-06 Score=83.26 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC--CChHHHHHHHHHHhCCCCCCCCHHH-------HHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD--PDIINVQSELVKWLGWELKEKDEEE-------RADR 244 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~ 244 (513)
.+.++|+|++|+|||||++.+++..... +|+...|+.+.+. .++.++++.++..+-....+.+... ..+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3899999999999999999999988765 8999899999866 6888888888543322211112211 1122
Q ss_pred HHHHHHhccCCeEEEEEecCCCc
Q 044393 245 LRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 245 l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
... ....|++.+|++|++...
T Consensus 247 Ae~--~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKR--LVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHH--HHHcCCCeEEEEEChhHH
Confidence 222 223579999999998544
No 78
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=6.8e-06 Score=83.79 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=100.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|+.|+|||+|++.+++.......-..+++++ ..++...+...++... .....+.. .. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~--~~-~- 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKN--EI-C- 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHH--Hh-c-
Confidence 5689999999999999999999775432223344443 2345555555543210 11112222 12 2
Q ss_pred CeEEEEEecCCCcc---c-ccccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKEL---D-LETVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~---~-~~~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
..-+||+||+.... . .+.+... ..+..||+||... .+...+...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 44589999996442 1 1222111 1266788887743 223334445678899999999999999
Q ss_pred HhcCCCCC-CCchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393 317 EHAGIDVA-DTTLTDVSKRVADECKGLPLAIKVVGSA 352 (513)
Q Consensus 317 ~~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~ 352 (513)
+.+..... ..-.++...-|++.++|.|-.+.-+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 88753221 1234788899999999999877655543
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.8e-05 Score=83.20 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=108.2
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE-EcCCCChHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT-VSQDPDIINVQSEL 225 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 225 (513)
.|..+..++|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.+-.....+...|.. +......-...+.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 355667788999999999999988765 4588999999999999999988875422111000110 00000001111111
Q ss_pred HHHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEe-CchHH
Q 044393 226 VKWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTT-RLQQV 291 (513)
Q Consensus 226 ~~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTt-r~~~v 291 (513)
...-... ......++....+..+. .-..+++-++|+||+..... ... +..+.+.+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 00111233333222210 11224666899999865432 222 22333355555555 43444
Q ss_pred Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 3332 233689999999999888888765422211 125678899999999665
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.9e-05 Score=82.47 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=108.2
Q ss_pred CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+...+.|..++..+... .+.++|+.|+||||+|+.+++.+........ ..+... .....+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~ 80 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVC----ESCVALA 80 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Cccccc----HHHHHhh
Confidence 3556677889999999999999888654 4689999999999999999987653211100 000000 0011111
Q ss_pred HHhC-------CCC-CCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEe-CchH
Q 044393 227 KWLG-------WEL-KEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTT-RLQQ 290 (513)
Q Consensus 227 ~~l~-------~~~-~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTt-r~~~ 290 (513)
..-+ ... .....++.......... -..+++-++|+|++.... . +..+..+.+...+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 0000 000 00112222221111111 112466699999985442 1 22222333355555555 4444
Q ss_pred HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 291 VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 291 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
+...+ +....+++.+++.++..+.+.+.+......- ..+.+..|++.++|.+- ++..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 43332 2236899999999999988887665322222 24567888999999874 44443
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.32 E-value=1.3e-05 Score=87.99 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=103.0
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEE-EEEcCCCChHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGI-ATVSQDPDIINVQS 223 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~ 223 (513)
+....+++||+.++.+++..|......-+.++|++|+||||+|+.++........ .+..+| +.++.-
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l-------- 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL-------- 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh--------
Confidence 4566778999999999999988776677889999999999999999998754311 122222 211110
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-C--CCcEEEEEeCchHH
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-A--NCCKILLTTRLQQV 291 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~--~~~~iivTtr~~~v 291 (513)
.. +....+.-.......+.. ....+++.+|++|++.... +...+..+ . +..++|-+|...+.
T Consensus 255 --~a--g~~~~ge~e~~lk~ii~e--~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 --QA--GASVKGEFENRLKSVIDE--VKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred --hc--ccccchHHHHHHHHHHHH--HHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 00 000011111122222222 1112478999999985432 21112212 1 24667777765332
Q ss_pred Hhh-------cCCcceeecCCCChHhHHHHHHHhcC---CCCCCCchHHHHHHHHHHhCCCc
Q 044393 292 CDR-------MGCDTRIKLDALDQAEGLDLLREHAG---IDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 292 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
... ......+.+++++.++..+++..... ....-.-..+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 111 11236899999999999999754432 11111122555666777776544
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.5e-05 Score=80.26 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=106.0
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhc---C----------------CCCeE
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQE---K----------------IFDEV 207 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~---~----------------~f~~~ 207 (513)
.|..+..++|.+.....|..++..+.. +.+.++|+.|+||||+|+.++..+... . .+...
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 345667788999999999999988754 456789999999999999998876421 0 01111
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCccc------ccccccCCCC
Q 044393 208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF--SESKGRKILIILDDVWKELD------LETVGIPANC 279 (513)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~ 279 (513)
..+..+.. ...++... +.... .-..+++-++|+|++..... +..+..+.+.
T Consensus 91 ~eidaas~--------------------~gvd~ir~-I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASN--------------------RGIDDIRA-LRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccC--------------------CCHHHHHH-HHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 11111110 11111111 11111 11124677999999865421 2222233335
Q ss_pred cEEEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 280 CKILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 280 ~~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
..+|++|.+ ..+...+ .....+.+.+++.++....+.+.+...... ...+.+..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555543 3333222 223578999999999998888866432222 225667889999999876444333
No 83
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=1.2e-06 Score=93.88 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC---CCC-eEEEEEEcCCC----ChH-HHH-----
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFD-EVGIATVSQDP----DII-NVQ----- 222 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~-~~~wv~~~~~~----~~~-~~~----- 222 (513)
+....++.+...+..+ .+++|+|++|+|||||++.+++...... .+. ..-..++++.. ... .++
T Consensus 323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~ 400 (638)
T PRK10636 323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLAR 400 (638)
T ss_pred CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHH
Confidence 3333555555555566 8999999999999999999998865421 111 12233444431 110 111
Q ss_pred ----------HHHHHHhCCCCC-------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCC
Q 044393 223 ----------SELVKWLGWELK-------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPAN 278 (513)
Q Consensus 223 ----------~~i~~~l~~~~~-------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~ 278 (513)
..++..++.... ..+..+ ..-.+.. .+.. ++-+||||++.+.+|..... ...
T Consensus 401 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~--~l~~-~p~lLlLDEPt~~LD~~~~~~l~~~L~~~- 476 (638)
T PRK10636 401 LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL--IVWQ-RPNLLLLDEPTNHLDLDMRQALTEALIDF- 476 (638)
T ss_pred hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-
Confidence 122222222100 001111 1111111 2333 66699999999998754331 222
Q ss_pred CcEEEEEeCchHHHhhc
Q 044393 279 CCKILLTTRLQQVCDRM 295 (513)
Q Consensus 279 ~~~iivTtr~~~v~~~~ 295 (513)
++.||++||+......+
T Consensus 477 ~gtvi~vSHd~~~~~~~ 493 (638)
T PRK10636 477 EGALVVVSHDRHLLRST 493 (638)
T ss_pred CCeEEEEeCCHHHHHHh
Confidence 34899999998877655
No 84
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.3e-05 Score=81.76 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=109.9
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++.+........ ....+.......+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~ 84 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIA 84 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHh
Confidence 345567788999999999999887754 45689999999999999999987743211000 00001112222222
Q ss_pred HHhCCCC------CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHHH
Q 044393 227 KWLGWEL------KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~l~~~~------~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v~ 292 (513)
...+... .....++....+.... .-..+++-++|+|++.... ....+ ..+.+...+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111100 0111222222221110 1112467799999986442 22222 222335666666644 3332
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
..+ .....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2225788999999999888887765332222 2567889999999998654433
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.28 E-value=1.4e-06 Score=80.09 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+||+|.|||||++.+.+-.+.
T Consensus 18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p 56 (254)
T COG1121 18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKP 56 (254)
T ss_pred eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4667776667777 89999999999999999999996654
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.25 E-value=2.2e-05 Score=73.11 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=87.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|+.|+|||.|++.+++....+ -..++|++..+ +... .. .+.+ .+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-------------~~----~~~~--~~~~- 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-------------GP----ELLD--NLEQ- 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-------------hH----HHHH--hhhh-
Confidence 678999999999999999998876543 23355554321 1111 01 1111 1211
Q ss_pred CeEEEEEecCCCc---ccccc-cc-----cCCCCcEEEEEeCchH---------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKE---LDLET-VG-----IPANCCKILLTTRLQQ---------VCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~---~~~~~-l~-----~~~~~~~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
- -+|++||+... ..+.. +. ....|..+|+||+... +...+.....+++++++.++-..+++
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 1 27889999533 22222 11 1122778888887532 22233334678999999999999998
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+++.... -.-.+++..-|++.+.|..-.+..+-
T Consensus 177 ~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 177 LRASRRG-LHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 6554221 12225777888888887665554433
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=1e-05 Score=80.79 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=96.3
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|.+..++.|...+.. ...+-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----
Confidence 34466888888888776531 113569999999999999999999977543 2 22111
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD----------------LETVG------I 275 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~ 275 (513)
..+.... ++ . ....++.++ ......+.+|+|||++.... +..+. .
T Consensus 190 ~~l~~~~---~g-----~----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG-----E----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh-----H----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0 111122222 22234678999999865310 11111 1
Q ss_pred CCCCcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 276 PANCCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 276 ~~~~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
..++..||.||..... .........+.+...+.++..++|..+......... -....+++.+.|..-
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~sg 329 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGASG 329 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCCH
Confidence 1226778888885432 111122457899999999999999987753222221 124678888887653
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=7.1e-05 Score=77.08 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=109.1
Q ss_pred ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
|..+...+|.+...+.|...+..+... ...++|+.|+||||+|+.+++..-.....+. .....-.....+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~ 82 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALE 82 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhh
Confidence 456677889999999999999888654 5689999999999999999887632111000 00000000000000
Q ss_pred HhCC------CCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHh
Q 044393 228 WLGW------ELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCD 293 (513)
Q Consensus 228 ~l~~------~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~ 293 (513)
.... .......++..+.+...... ..+++-++|+|++..... +..+..+.+.+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 00000112222222210001 114667999999865432 22223343467777777653 2221
Q ss_pred hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
.+ .....+++.+++.++....+.+.+......- .++.+..|++.++|.+.-+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 11 1236899999999999999887665332222 2577889999999998544433
No 89
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5.3e-05 Score=77.38 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=105.5
Q ss_pred ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----Ce--------------EEE
Q 044393 149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DE--------------VGI 209 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~--------------~~w 209 (513)
|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++..-....- .| .-|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 45566778999999999999988765 568899999999999999998876432100 00 001
Q ss_pred EEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEE
Q 044393 210 ATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKI 282 (513)
Q Consensus 210 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~i 282 (513)
+.+.... ....++.......+. .-..+++-++|+|++..... +..+..+.+...+
T Consensus 93 ~~i~g~~------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LEIDGAS------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EEeeccc------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 1111100 001111111111100 11124677899999854421 1222233336666
Q ss_pred EEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 283 LLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 283 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
|++|.. ..+...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+- ++..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 2222221 123578999999999988888765432211 225678889999999775 43333
No 90
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.23 E-value=1.8e-06 Score=82.98 Aligned_cols=138 Identities=26% Similarity=0.364 Sum_probs=78.4
Q ss_pred ccc-hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCe----------EEEEEEcCCCC--
Q 044393 155 FET-TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDE----------VGIATVSQDPD-- 217 (513)
Q Consensus 155 ~~g-r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~----------~~wv~~~~~~~-- 217 (513)
.+| ....++.+...+.++ .++++.|++|+|||||.+.+.+..+... .+.. .-..++.+.+.
T Consensus 13 ~~~~~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EeCCCCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 344 355666666666677 8999999999999999999999886531 0000 01233333332
Q ss_pred ----hHH------------------HHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHhccCCeEEEEEecCCCcccc
Q 044393 218 ----IIN------------------VQSELVKWLGWELKEKD-----EEERADRLRLMFSESKGRKILIILDDVWKELDL 270 (513)
Q Consensus 218 ----~~~------------------~~~~i~~~l~~~~~~~~-----~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~ 270 (513)
..+ ....+++.++....... ......++.-...+.. ++-|++||++.+..|.
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~-~P~lliLDEPt~GLDp 169 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH-DPELLILDEPTSGLDP 169 (293)
T ss_pred ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-CCCEEEECCCCcCCCH
Confidence 122 22234444444321000 0112222222224554 7779999999998874
Q ss_pred cccc-------c-CCCC-cEEEEEeCchHHHhhc
Q 044393 271 ETVG-------I-PANC-CKILLTTRLQQVCDRM 295 (513)
Q Consensus 271 ~~l~-------~-~~~~-~~iivTtr~~~v~~~~ 295 (513)
.... . ...| ..|++|||....+..+
T Consensus 170 ~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 3321 1 1114 7999999997766655
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.6e-05 Score=81.46 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=104.9
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEE-EEEcCCCChHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGI-ATVSQDPDIINV 221 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~ 221 (513)
.|..+...+|.+.....|..++..++. +.+.++||.|+||||+|+.++..+-..... .|..- .+....++...
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 345566778999999999999988764 456899999999999999998876432110 00000 00000000000
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEe-CchHHHh
Q 044393 222 QSELVKWLGWELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTT-RLQQVCD 293 (513)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTt-r~~~v~~ 293 (513)
+ ........++....+...-.. ..+++-++|+|++.... .... +..|.+...+|++| ....+..
T Consensus 92 -------i-daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 92 -------M-DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred -------E-eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 000001122222222211111 12467799999985442 2222 22333355555444 4444433
Q ss_pred hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
.+ .....+++.+++.++....+...+....... ..+.+..|++.++|.+--+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 32 2236899999999999988887654222122 2456788999999977533
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.22 E-value=2.6e-05 Score=71.73 Aligned_cols=178 Identities=18% Similarity=0.215 Sum_probs=106.3
Q ss_pred cCCccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393 146 MHIPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN 220 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (513)
...|..+..|+|.++..++|.-.+. +..+.-+.++||+|.||||||..+++..... +. + .+.+-+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~--tsGp~le- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----I--TSGPALE- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----e--ccccccc-
Confidence 3457788899999998888876663 2346789999999999999999999998765 11 1 1111100
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccc---------------cccC
Q 044393 221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLET---------------VGIP 276 (513)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~---------------l~~~ 276 (513)
...++...+ .... +.=+|.+|++.... ..+. +...
T Consensus 90 ----------------K~gDlaaiL----t~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 90 ----------------KPGDLAAIL----TNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred ----------------ChhhHHHHH----hcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 011111111 1222 34466667663321 0111 1111
Q ss_pred CCCcE-EEEEeCchHHHhhcCC--cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 277 ANCCK-ILLTTRLQQVCDRMGC--DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 277 ~~~~~-iivTtr~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
.+..+ |=.|||.-.+...+.. .-..+++-.+.+|-.++..+.+..-.. .-.++.+.+|+++..|-|--..-+.+..
T Consensus 149 LppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 12223 3368886443332211 246788889999999999887752211 1125678999999999998666555544
Q ss_pred c
Q 044393 354 T 354 (513)
Q Consensus 354 ~ 354 (513)
+
T Consensus 228 R 228 (332)
T COG2255 228 R 228 (332)
T ss_pred H
Confidence 3
No 93
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.1e-06 Score=78.98 Aligned_cols=38 Identities=29% Similarity=0.578 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..| .+++|+|++|+|||||++.++...+.
T Consensus 22 ~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 22 ALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred hhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 455555555566 89999999999999999999887654
No 94
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=5.3e-06 Score=73.30 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=63.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLRLMFS 250 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~~~ 250 (513)
.+++|+|++|+|||||++.+........ .++..-..++.+... .+. ....-.+.. .
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar--a 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA--A 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH--H
Confidence 8999999999999999999998765431 112111122333221 111 111222222 4
Q ss_pred hccCCeEEEEEecCCCccccccc------ccC--CC-CcEEEEEeCchHHHhhcCCcceeecC
Q 044393 251 ESKGRKILIILDDVWKELDLETV------GIP--AN-CCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 251 l~~~~~~LlVLDd~~~~~~~~~l------~~~--~~-~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
+.. ++-+++||++.+..|.... ... .. +..||++||+......+. .+.+.+.
T Consensus 86 l~~-~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~ 146 (177)
T cd03222 86 LLR-NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE 146 (177)
T ss_pred Hhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence 444 7789999999888764331 111 12 478999999987665442 2444444
No 95
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.21 E-value=7.3e-06 Score=72.05 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-EEEEEEcCCCChHHHHHHHHHHhCC-CCCCCC
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-VGIATVSQDPDIINVQSELVKWLGW-ELKEKD 237 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~ 237 (513)
+.+...+.++ .+++|+|++|+|||||++.++........ ++. ....++.+...... ..+.+.+.. .....+
T Consensus 18 ~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS 93 (166)
T cd03223 18 KDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLS 93 (166)
T ss_pred ecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCC
Confidence 3333334455 89999999999999999999988654311 111 11234444433221 122222221 112222
Q ss_pred H-HHHHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 238 E-EERADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 238 ~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
. +...-.+.. .+.. ++-+++||++.+..|..... ... +..||++||+..... . +.+.+.+
T Consensus 94 ~G~~~rv~lar--al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~-~-~d~i~~l 160 (166)
T cd03223 94 GGEQQRLAFAR--LLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWK-F-HDRVLDL 160 (166)
T ss_pred HHHHHHHHHHH--HHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHh-h-CCEEEEE
Confidence 2 222222222 4444 77899999999887743321 111 578999999976543 2 3445544
No 96
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.19 E-value=8.4e-06 Score=71.98 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh---cC---CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC--C---
Q 044393 167 EALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ---EK---IFDEVGIATVSQDPDIINVQSELVKWLGWELK--E--- 235 (513)
Q Consensus 167 ~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~---~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--- 235 (513)
..+..+ .+++|+|++|+|||||.+.+...... .. .|......++.+ .+.+..++.... .
T Consensus 16 l~i~~G--~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~ 85 (176)
T cd03238 16 VSIPLN--VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKL 85 (176)
T ss_pred EEEcCC--CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCc
Confidence 334455 89999999999999999988642111 00 011111122222 345666654321 1
Q ss_pred --CCHH-HHHHHHHHHHHhccCC--eEEEEEecCCCccccccc------cc--CCCCcEEEEEeCchHHHhhcCCcceee
Q 044393 236 --KDEE-ERADRLRLMFSESKGR--KILIILDDVWKELDLETV------GI--PANCCKILLTTRLQQVCDRMGCDTRIK 302 (513)
Q Consensus 236 --~~~~-~~~~~l~~~~~l~~~~--~~LlVLDd~~~~~~~~~l------~~--~~~~~~iivTtr~~~v~~~~~~~~~~~ 302 (513)
.+.. ...-.+.. .+.. + +-+++||++.+..|.... .. ...|..||++||+...... +...+.
T Consensus 86 ~~LSgGq~qrl~lar--al~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~ 160 (176)
T cd03238 86 STLSGGELQRVKLAS--ELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIID 160 (176)
T ss_pred CcCCHHHHHHHHHHH--HHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEE
Confidence 1111 11222222 4444 5 789999999888763321 11 1137899999999876542 445555
Q ss_pred c
Q 044393 303 L 303 (513)
Q Consensus 303 l 303 (513)
+
T Consensus 161 l 161 (176)
T cd03238 161 F 161 (176)
T ss_pred E
Confidence 5
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.1e-05 Score=79.67 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=106.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhc---------------------CCCCe
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQE---------------------KIFDE 206 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~---------------------~~f~~ 206 (513)
|..+..++|.+...+.|...+..+... .+.++|+.|+||||+|+.++...... .+|+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 455667789999999999999887654 57899999999999999988876421 12221
Q ss_pred EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCC
Q 044393 207 VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANC 279 (513)
Q Consensus 207 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~ 279 (513)
. .+..+... ..++....+.... .-..+++-++|+|++..... ...+ ..+.++
T Consensus 93 ~-~ld~~~~~--------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 H-ELDAASNN--------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred E-EecccccC--------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 1 11111111 1122222221100 11123566889999865432 2222 223335
Q ss_pred cEEEEEe-CchHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 280 CKILLTT-RLQQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 280 ~~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
+.+|++| ....+...+ .....+++.+++.++....+.+.+....... ..+.+..|++.++|..--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 6665555 444443332 2236799999999999999987665332222 2466788999999977544
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.19 E-value=2.6e-05 Score=82.69 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=43.0
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
|..+..++|+...+..+...+.......+.|+|++|+||||||+.+++.....
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 44556677888888888887766666789999999999999999998877543
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.3e-05 Score=78.31 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=109.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+...+|.+.....|..++..+.. +.+.++|+.|+||||+|+.+++.+-....... . ......-...+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHh
Confidence 345666778999999999999987753 67889999999999999999988754311100 0 00111111222222
Q ss_pred HHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeCc-hHHH
Q 044393 227 KWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr~-~~v~ 292 (513)
...... ......+...+.+.... .-..+++-++|+|++..... ...+ ..+.....+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110 01112222222222110 11124667999999875422 2222 222235555555544 3333
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
..+ .....+++.+++.++....+.+.+......- ..+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 1226788889999998888877665322121 2466889999999988654433
No 100
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.7e-06 Score=72.60 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=36.7
Q ss_pred CeEEEEEecCCCcccccccccC--------CCCcEEEEEeCchHHHhhcCCccee
Q 044393 255 RKILIILDDVWKELDLETVGIP--------ANCCKILLTTRLQQVCDRMGCDTRI 301 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l~~~--------~~~~~iivTtr~~~v~~~~~~~~~~ 301 (513)
++-+.|||++++..|++.+... .+++.++++||...+.+.+.....+
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 5669999999999998776422 2388999999999999887655443
No 101
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.2e-06 Score=72.19 Aligned_cols=39 Identities=28% Similarity=0.519 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+..|...+..+ ..+.|.|++|+|||||.+.++.-.++.
T Consensus 17 lf~~L~f~l~~G--e~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 17 LFSDLSFTLNAG--EALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred eecceeEEEcCC--CEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 445555556666 899999999999999999999988764
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.13 E-value=4.5e-05 Score=74.80 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=84.0
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+...+|.+...+.+..++.++.. ..+.++|++|+||||+|+.+++..... ...++.+. .. ....+..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~-----~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-----VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc-----ceEeccCc-cc-HHHHHHHH
Confidence 355667778999999999999987764 466669999999999999998876321 22333332 11 11111111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--c----ccccc-cCCCCcEEEEEeCchH-HHhhc-CC
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--D----LETVG-IPANCCKILLTTRLQQ-VCDRM-GC 297 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~----~~~l~-~~~~~~~iivTtr~~~-v~~~~-~~ 297 (513)
..+ ... .... +.+-++|+||+.... + +..+. ...+++.+|+||.... +...+ +.
T Consensus 89 ~~~---------------~~~-~~~~-~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 TRF---------------AST-VSLT-GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHH---------------HHh-hccc-CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111 000 0111 256689999996541 1 22211 2223778888887532 11111 11
Q ss_pred cceeecCCCChHhHHHHHHH
Q 044393 298 DTRIKLDALDQAEGLDLLRE 317 (513)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~ 317 (513)
...+.+...+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24677777777777766554
No 103
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.13 E-value=0.00011 Score=78.51 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+..| ..|+|+|.+|+|||||++.+.+-..+
T Consensus 487 ~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 487 PVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred chhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3666666666677 89999999999999999999887765
No 104
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=1.8e-05 Score=78.95 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393 154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL 233 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (513)
..+..+..++.+...+..+ ..|.++|++|+|||++|+.+++.......+..+.|+.+++..+..+.+....- .+...
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCe
Confidence 3456678888998888877 78889999999999999999998876667888899999988876665532210 00000
Q ss_pred CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 234 KEKDEEERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 234 ~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
... .......+... ....+++++||+|++...
T Consensus 253 ~~~-~G~f~~~~~~A-~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RRK-DGIFYNFCQQA-KEQPEKKYVFIIDEINRA 284 (459)
T ss_pred Eec-CchHHHHHHHH-HhcccCCcEEEEehhhcc
Confidence 000 00111112210 122247899999998654
No 105
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=5.5e-05 Score=77.15 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
...+.|+|++|+|||+|++.+++.......-..+.|++. .+....+...+... .... ... ...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~~----f~~--~~~- 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----KLNE----FRE--KYR- 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----cHHH----HHH--HHH-
Confidence 356999999999999999999998765421123455542 34455555544321 1111 111 121
Q ss_pred CCeEEEEEecCCCcccc----cccccC-----CCCcEEEEEeC-chHH--------HhhcCCcceeecCCCChHhHHHHH
Q 044393 254 GRKILIILDDVWKELDL----ETVGIP-----ANCCKILLTTR-LQQV--------CDRMGCDTRIKLDALDQAEGLDLL 315 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~~----~~l~~~-----~~~~~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~e~~~lf 315 (513)
.+.-+|++||+....+- ..+... ..+..||+||. .+.- ...+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 14558999999754221 112111 12567888874 3321 122333457889999999999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 316 REHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
++.+..... .-.+++...|++.+.|..-.+.
T Consensus 273 ~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHG-ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCC-CCCHHHHHHHHhccccCHHHHH
Confidence 988753221 2236788889998888655443
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.11 E-value=1.4e-05 Score=74.29 Aligned_cols=185 Identities=18% Similarity=0.162 Sum_probs=110.7
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEE-EEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGI-ATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~ 226 (513)
.|..+..+.|.+..+..|.+.+.....+....+||+|.|||+.|..++..+-....|.+.+- .++|...... +..+=.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki 109 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI 109 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh
Confidence 35566677888999999999998877899999999999999999999988876556666542 3344332221 111000
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCe-EEEEEecCCCc--ccccccc---cCCC-CcEEEEEeCchH-HHhhcCC-
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRK-ILIILDDVWKE--LDLETVG---IPAN-CCKILLTTRLQQ-VCDRMGC- 297 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~-~LlVLDd~~~~--~~~~~l~---~~~~-~~~iivTtr~~~-v~~~~~~- 297 (513)
..+ .......... .-...++ -++|||++... +.|..+. .... ..+.|+++.+-. +...+..
T Consensus 110 k~f---------akl~~~~~~~-~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 110 KNF---------AKLTVLLKRS-DGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred cCH---------HHHhhccccc-cCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 000 0000000000 0001122 48999998765 3454443 2222 566666665532 2222211
Q ss_pred cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
-..+..++|..+....-++..+..+...-+ .+..+.|++.++|.--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 145888999999988888887764433333 5677889999988543
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.11 E-value=5.3e-05 Score=76.11 Aligned_cols=167 Identities=21% Similarity=0.197 Sum_probs=94.1
Q ss_pred ccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393 153 SSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (513)
..+.|.+..++.|...+.. ..++-|.++|++|+|||++|+.+++..... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----H
Confidence 3456888888887776521 124569999999999999999999876532 222211 1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc---c---CC
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG---I---PA 277 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~---~---~~ 277 (513)
. +.... .+... .....+.. ......+.+|+|||+.... + +..+. . ..
T Consensus 200 ~----l~~~~----~g~~~-~~i~~~f~--~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 200 E----LVQKF----IGEGA-RLVRELFE--LAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred H----HhHhh----ccchH-HHHHHHHH--HHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1 11111 01111 11111111 2223467899999986431 0 11111 0 11
Q ss_pred CCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 278 NCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 278 ~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
++..||.||......+. + .....+.+.+.+.++-.++|+.+......... -....+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 25678878876432221 1 12357999999999999999987753222211 12466777777764
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.6e-05 Score=79.15 Aligned_cols=194 Identities=18% Similarity=0.185 Sum_probs=106.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+.....|...+..+.. +.+.++|+.|+||||+|+.+++.+-....... .....-.....|.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 345677788999999999999988765 45689999999999999999887643211100 0000000011110
Q ss_pred HHhCC-----C-CCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeC-chHHH
Q 044393 227 KWLGW-----E-LKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTR-LQQVC 292 (513)
Q Consensus 227 ~~l~~-----~-~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr-~~~v~ 292 (513)
..-.. . ......++....+...... ..+++-++|+|++..... +..+..+.+...+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00000 0 0011112222211111011 123566899999865421 222223344666665554 34444
Q ss_pred hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
..+. ....+++.+++.++....+...+......- ..+.+..|++.++|..- ++..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 225788999999998888877654322222 25667888999998764 44444
No 109
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=6.7e-06 Score=74.69 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...++.+.-.+.++ .+|+|+|++|||||||.+.++.-...
T Consensus 16 ~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 16 VEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred eEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34455555556666 89999999999999999999887654
No 110
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=3e-05 Score=73.61 Aligned_cols=129 Identities=12% Similarity=0.214 Sum_probs=66.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
...+.++|++|+||||+|+.+++............++.++.. ++... ..+.........+. ..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~--------~~g~~~~~~~~~~~----~a- 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE--------YIGHTAQKTREVIK----KA- 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh--------hccchHHHHHHHHH----hc-
Confidence 356889999999999999999987643221111123333221 11110 01111112222222 11
Q ss_pred CCeEEEEEecCCCcc----------cccccccC---CC-CcEEEEEeCchHHH------hhc--CCcceeecCCCChHhH
Q 044393 254 GRKILIILDDVWKEL----------DLETVGIP---AN-CCKILLTTRLQQVC------DRM--GCDTRIKLDALDQAEG 311 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~----------~~~~l~~~---~~-~~~iivTtr~~~v~------~~~--~~~~~~~l~~L~~~e~ 311 (513)
...+|++||+.... .+..+... .. ...+|+++...... ..+ .....+.+++++.++-
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 23489999996421 12222211 11 33555555432220 011 1124688999999999
Q ss_pred HHHHHHhcC
Q 044393 312 LDLLREHAG 320 (513)
Q Consensus 312 ~~lf~~~~~ 320 (513)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999988775
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.08 E-value=6e-05 Score=82.15 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=91.0
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 224 (513)
+....+++||+.+++.+...|......-+.++|++|+|||++|+.+++....... ....+|. ++ . ..
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~----~~ 248 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----M----GS 248 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----H----HH
Confidence 4556678999999999999987776677889999999999999999998744311 1233332 11 1 11
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc----------cccccc-cCCC--CcEEEEEeCchH
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL----------DLETVG-IPAN--CCKILLTTRLQQ 290 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~----------~~~~l~-~~~~--~~~iivTtr~~~ 290 (513)
++.. ....+ +....+..++ .+...++.+|++|++.... +...+. +... ..++|-+|...+
T Consensus 249 l~a~--~~~~g----~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 249 LLAG--TKYRG----DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred Hhhh--ccccc----hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 1110 00111 1122222222 2323368899999985331 112222 1111 345565555422
Q ss_pred HHhh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393 291 VCDR-------MGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 291 v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
.... ......+.+++++.++..++++...
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2110 1123579999999999999998654
No 112
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.07 E-value=2.1e-05 Score=70.15 Aligned_cols=123 Identities=22% Similarity=0.222 Sum_probs=66.6
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-----------EEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-----------VGIATVSQDPDIINVQSELVKWLGWELK 234 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-----------~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 234 (513)
+.++ .+++|+|++|+|||||++.++........ |+. ....++.+.+.... ..+.+.+ ..
T Consensus 25 i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~ 97 (178)
T cd03247 25 LKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GR 97 (178)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---cc
Confidence 4455 89999999999999999999987654210 000 00112222221111 0111111 11
Q ss_pred CCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc-------ccCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 235 EKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV-------GIPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 235 ~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
..+. +...-.+.. .+.. ++-+++||++.+..|.... .....+..||++||+...... +.+.+.+
T Consensus 98 ~LS~G~~qrv~lar--al~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 98 RFSGGERQRLALAR--ILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred cCCHHHHHHHHHHH--HHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111 111222222 4444 7789999999988763321 111237889999999877652 3455444
No 113
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.07 E-value=1.7e-05 Score=68.52 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
...+..+...+..+ ..+.++|++|.|||||.+.+|...++.
T Consensus 15 ~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 15 REALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred chhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 34666676667777 899999999999999999999988753
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00021 Score=69.78 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=89.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQDPDIINVQSELVKWLGWEL 233 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (513)
.+.+.+.|+.|+||||+|..++..+--.. |.| ..++.-... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~-----------------~ 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA-----------------D 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC-----------------C
Confidence 35788999999999999999988875321 111 112211000 0
Q ss_pred CCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhcC-Ccceeec
Q 044393 234 KEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRMG-CDTRIKL 303 (513)
Q Consensus 234 ~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~~-~~~~~~l 303 (513)
.....++....... +.. ..+++-++|+|++..... +..+..|.+++.+|+||++.. +...+. -...+.+
T Consensus 84 ~~i~id~iR~l~~~-~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 84 KTIKVDQVRELVSF-VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCHHHHHHHHHH-HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 01122333332221 111 123455667899876532 333444555788888888753 333322 2367999
Q ss_pred CCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 304 DALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 304 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
.+++.+++.+.+....+.. ..+.+..++..++|.|+....+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998764211 1345667889999999865544
No 115
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.05 E-value=1.8e-05 Score=67.78 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=58.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-------EEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-------TVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLR 246 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~ 246 (513)
.+++|+|++|+|||||++.+.+..... ...+++ ++.+ .+. ....-.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~~~i~~~~~---------------------lS~G~~~rv~la 82 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGSTVKIGYFEQ---------------------LSGGEKMRLALA 82 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCeEEEEEEcc---------------------CCHHHHHHHHHH
Confidence 899999999999999999999877542 222222 1222 111 11122222
Q ss_pred HHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCchHHHhhc
Q 044393 247 LMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 247 ~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~~v~~~~ 295 (513)
. .+.. ++-++++|++....|.... .... +..||++||+.......
T Consensus 83 r--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~ 133 (144)
T cd03221 83 K--LLLE-NPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQV 133 (144)
T ss_pred H--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHh
Confidence 2 4444 7789999999887663322 1111 56899999987766543
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.05 E-value=8.7e-05 Score=75.33 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=91.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|+.|+|||+|++.+++.......-..+++++ ..+....+...+... .... +.. .+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----~~~~----~~~--~~~-- 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN----KMEE----FKE--KYR-- 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----CHHH----HHH--HHH--
Confidence 5789999999999999999999886542112344543 223344444444321 1111 122 121
Q ss_pred CeEEEEEecCCCcccc----ccccc-----CCCCcEEEEEeCch-H--------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKELDL----ETVGI-----PANCCKILLTTRLQ-Q--------VCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~----~~l~~-----~~~~~~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
+.-+|+|||+.....- +.+.. ...+..+|+||... . +...+.....+.+.+.+.++-..++.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2348999999653211 11111 11256788877642 1 22223333568999999999999999
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
+.+..... .-.+++...|++.+.|.+-.+.
T Consensus 279 ~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGL-ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence 88864322 2236778889999888776443
No 117
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.05 E-value=1.4e-05 Score=70.75 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=65.5
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeE------------EEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEV------------GIATVSQDPDIINVQSELVKWLGWEL 233 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~------------~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (513)
+..+ .+++|+|++|+|||||++.++........ |+.. ...++.+.+.... .++.+.+
T Consensus 25 i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~l---- 96 (173)
T cd03246 25 IEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS--GSIAENI---- 96 (173)
T ss_pred ECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc--CcHHHHC----
Confidence 3445 89999999999999999999987654210 1100 0112222221111 0111111
Q ss_pred CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 234 KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 234 ~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
.+. +...-.+.. .+.. ++-+++||++.+..|.... . . ...|..||++||+..... . +.+.+.+
T Consensus 97 --LS~G~~qrv~la~--al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 97 --LSGGQRQRLGLAR--ALYG-NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred --cCHHHHHHHHHHH--HHhc-CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 111 111222222 4444 7779999999988764321 1 1 112779999999987664 3 4455444
No 118
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.05 E-value=8e-06 Score=71.57 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC--CCChHHHHHHHHHHhCCCCCCCCHH-HHHHH
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ--DPDIINVQSELVKWLGWELKEKDEE-ERADR 244 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 244 (513)
.+.++ .+++|+|++|+|||||++.++...... ...+++.-.. ..+..+... +.++.. .+.+.. ...-.
T Consensus 22 ~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~ 92 (163)
T cd03216 22 SVRRG--EVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVE 92 (163)
T ss_pred EEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHH
Confidence 34455 899999999999999999999876542 2333322111 111111111 111111 112221 22222
Q ss_pred HHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHHHhh
Q 044393 245 LRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQVCDR 294 (513)
Q Consensus 245 l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v~~~ 294 (513)
+.. .+.. ++-++++|++.+..|.... . . ...+..||++||+......
T Consensus 93 lar--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 93 IAR--ALAR-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHH--HHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 222 4444 7789999999988773321 1 1 1227899999999775544
No 119
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00018 Score=75.47 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=105.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|.+...+.|..++..+.. +.+.++|+.|+||||+|+.++...-.....+. .+.+.-.....+.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 355677788999999999999987754 55778999999999999999877643211000 0000001111111
Q ss_pred HHhCCC------CCCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEe-CchHHH
Q 044393 227 KWLGWE------LKEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTT-RLQQVC 292 (513)
Q Consensus 227 ~~l~~~------~~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTt-r~~~v~ 292 (513)
...... ......++.......... -..++.-++|+|++.... ....+ ..+.+...+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 001112222222221111 123467799999986542 22222 2333354555444 433333
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
..+ .....+.+.+++.++....+...+.......+ .+.+..|++.++|.+.-+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 222 22357889999999998888876643222222 566788899999887643
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=0.00013 Score=69.85 Aligned_cols=194 Identities=15% Similarity=0.104 Sum_probs=118.6
Q ss_pred cccchhHHHHHHHHHHhcCC---ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393 154 SFETTKSACNQITEALKKGS---TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG 230 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (513)
.+.+|+..+..+...+.+.. +..|.|.|.+|.|||.+.+++.+..... .+|+++-+.++...++..|+...+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHhc
Confidence 34579999999998886543 3456899999999999999999987332 569999999999999999999885
Q ss_pred -CCCCCCCHHH----HHH---HHHHHHHhc-cCCeEEEEEecCCCcccccccccC----------CCCcEEEEEeCch--
Q 044393 231 -WELKEKDEEE----RAD---RLRLMFSES-KGRKILIILDDVWKELDLETVGIP----------ANCCKILLTTRLQ-- 289 (513)
Q Consensus 231 -~~~~~~~~~~----~~~---~l~~~~~l~-~~~~~LlVLDd~~~~~~~~~l~~~----------~~~~~iivTtr~~-- 289 (513)
.+.++..... ..+ .+.++-... .++.++||||+++...|.+.+..+ .+...|+++...-
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 2222221111 111 122211121 246899999999877665554321 1234444443332
Q ss_pred HHHhhcCCc--ceeecCCCChHhHHHHHHHhcCCCCC----CCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 290 QVCDRMGCD--TRIKLDALDQAEGLDLLREHAGIDVA----DTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 290 ~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
.....+++. .++....-+.+|...++.+.-..... ..-+.=+..-....|+ -+-.+..++...
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 222223433 45667888999998888764421111 0112223455556777 555555555443
No 121
>PRK06620 hypothetical protein; Validated
Probab=98.04 E-value=4.4e-05 Score=69.88 Aligned_cols=130 Identities=18% Similarity=0.039 Sum_probs=79.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
+.+.|+|++|+|||+|++.+++.... .++ +..+. . . . .. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~--~~~~~-------------------~-~-------~--~~-~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YII--KDIFF-------------------N-E-------E--IL-E- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEc--chhhh-------------------c-h-------h--HH-h-
Confidence 56999999999999999987765431 111 10000 0 0 0 11 1
Q ss_pred CeEEEEEecCCCcccccccccC-----CCCcEEEEEeCchH-------HHhhcCCcceeecCCCChHhHHHHHHHhcCCC
Q 044393 255 RKILIILDDVWKELDLETVGIP-----ANCCKILLTTRLQQ-------VCDRMGCDTRIKLDALDQAEGLDLLREHAGID 322 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l~~~-----~~~~~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 322 (513)
..-+|++||+....+ ..+... ..|..+|+|++... +...+.....+++++++.++-..++++.+...
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 335788999974322 112111 23778899888532 23334444589999999999888888876532
Q ss_pred CCCCchHHHHHHHHHHhCCCchHH
Q 044393 323 VADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 323 ~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
. -.-.+++..-|++.+.|.--.+
T Consensus 164 ~-l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S-VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C-CCCCHHHHHHHHHHccCCHHHH
Confidence 1 1122677788888887755443
No 122
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=2.8e-05 Score=68.60 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=38.2
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.-++|..+.++.+.-.+..+ .+.+++||+|+|||||.+.+.+-.
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cceeEEECchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhc
Confidence 34556778888888887777777 899999999999999999886543
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.02 E-value=7.7e-05 Score=76.73 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=92.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|++|+|||+|++.+++.......-..+.+++.. .....+...+... ... .+.. .+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~~~----~~~~--~~~-- 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN----TME----EFKE--KYR-- 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC----cHH----HHHH--HHh--
Confidence 568999999999999999999998754222234454322 2333444433211 111 1122 221
Q ss_pred CeEEEEEecCCCccc----cccccc-----CCCCcEEEEEeCchH---------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKELD----LETVGI-----PANCCKILLTTRLQQ---------VCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~----~~~l~~-----~~~~~~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
+.-+|+|||+..... .+.+.. ...+..+|+||.... +...+.....+++.+.+.++-..+++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 344899999964321 111111 112566888876531 22334444679999999999999999
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
+.+.... ..-.+++..-|++.+.|..-.+.
T Consensus 291 ~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 291 KKAEEEG-IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHcC-CCCCHHHHHHHHcCcCCCHHHHH
Confidence 8875322 22236788899999998876443
No 124
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.02 E-value=9.9e-06 Score=70.63 Aligned_cols=40 Identities=30% Similarity=0.535 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
+.++++......+ .+++|.|++|.||||+.+.++.-+.+.
T Consensus 16 ~AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 16 QAVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred hhhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 3455555555566 999999999999999999999988764
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00014 Score=76.02 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=108.0
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+...+|.+..+..|..++.++.. +.+.++|+.|+||||+|+.+++.+-....... ..+....+ ...+.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 355667788999999999999988764 45889999999999999999988753211100 00000000 01110
Q ss_pred HHhCC-----C-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeCc-hHHH
Q 044393 227 KWLGW-----E-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTRL-QQVC 292 (513)
Q Consensus 227 ~~l~~-----~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr~-~~v~ 292 (513)
..-.. . ......++......... .-..+++-++|+|++..... .. .+..+.+...+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00000 0 00111222222221111 11134667899999865432 22 22233346666666544 3333
Q ss_pred hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
..+ .....+++.+++.++....+.+.+...... -.++.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 222 222568999999999988888776432212 225677889999999885443
No 126
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.02 E-value=2.2e-05 Score=71.11 Aligned_cols=134 Identities=21% Similarity=0.278 Sum_probs=74.6
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeEEEEEEcCCCCh------
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEVGIATVSQDPDI------ 218 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~------ 218 (513)
.+.-.+..+ .+++|+||+|+|||||...+..-.++.. .|...-...+.|.+++
T Consensus 23 ~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 23 DVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred cceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence 333334455 8999999999999999999976654421 0111112233333321
Q ss_pred ------------------HHHHHHHHHHhCCCCC-------CCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCcccccc
Q 044393 219 ------------------INVQSELVKWLGWELK-------EKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLET 272 (513)
Q Consensus 219 ------------------~~~~~~i~~~l~~~~~-------~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~ 272 (513)
......+++.++.... +.+- ++....+.. .+.. .+-+|+.|+++..+|...
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR--AL~~-~P~iilADEPTgnLD~~t 177 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR--ALIN-NPKIILADEPTGNLDSKT 177 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH--HHhc-CCCeEEeeCccccCChHH
Confidence 1122333444444311 1111 222222222 4444 788999999988766322
Q ss_pred -------cccC--CCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393 273 -------VGIP--ANCCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 273 -------l~~~--~~~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
+... ..|..||++||++.++..+ .+.+.+.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 1111 1278999999999998854 3555553
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.02 E-value=0.00011 Score=81.06 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=90.0
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHHHH
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
...+.+||+.+++.+...|.....+-+.++|++|+|||++|..++........ -+..+|. + +.. .++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~----~l~ 247 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIG----LLL 247 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHH----HHh
Confidence 34567899999999999997766567789999999999999999988753211 1233342 1 111 111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccCC---CCcEEEEEeCchHHHhh
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIPA---NCCKILLTTRLQQVCDR 294 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~~---~~~~iivTtr~~~v~~~ 294 (513)
. +....+.-.......+. .+...++.+|++|++.... +...+..+. +..++|.+|..++....
T Consensus 248 a--g~~~~ge~e~rl~~i~~---~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 A--GTKYRGEFEERLKRIFD---EIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred c--cCCCccHHHHHHHHHHH---HHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 1 11112211122222222 2233478999999984321 122222111 24567776665543211
Q ss_pred -------cCCcceeecCCCChHhHHHHHHHh
Q 044393 295 -------MGCDTRIKLDALDQAEGLDLLREH 318 (513)
Q Consensus 295 -------~~~~~~~~l~~L~~~e~~~lf~~~ 318 (513)
......+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 122356888889999988887643
No 128
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=4.9e-06 Score=77.32 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc---CCCCeEEEEEEcC
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFDEVGIATVSQ 214 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~ 214 (513)
+++.-.+.++ ..+++.|++|+|||||.+.++.-..+. -.|+...|..+++
T Consensus 19 ~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 19 DDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence 3444445566 899999999999999999999887653 2344444544443
No 129
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=2.1e-05 Score=69.65 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=64.3
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-----------------EEcCCCChH---HHHHH
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-----------------TVSQDPDII---NVQSE 224 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-----------------~~~~~~~~~---~~~~~ 224 (513)
+...+.++ .+++|+|++|+|||||++.++...... ...+++ ++.+..... .+...
T Consensus 19 ~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (173)
T cd03230 19 ISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN 93 (173)
T ss_pred eEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence 33334455 899999999999999999999876432 111111 222221110 11111
Q ss_pred HHHHhCCCCCCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c--cCCCCcEEEEEeCchHHHhhc
Q 044393 225 LVKWLGWELKEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G--IPANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 225 i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~--~~~~~~~iivTtr~~~v~~~~ 295 (513)
+. .+. +...-.+.. .+.. ++-++++|++....|.... . ....|..||++||+......+
T Consensus 94 ~~---------LS~G~~qrv~lar--al~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 94 LK---------LSGGMKQRLALAQ--ALLH-DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred hh---------cCHHHHHHHHHHH--HHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 11 111 111222222 4444 7889999999988774332 1 111268899999998766543
No 130
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=8.2e-06 Score=87.45 Aligned_cols=40 Identities=30% Similarity=0.536 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 14 ~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~p 53 (638)
T PRK10636 14 RVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISA 53 (638)
T ss_pred ceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33455555555666 89999999999999999999997654
No 131
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=2.4e-05 Score=69.14 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE------------------EEcCCCChHHHHH
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA------------------TVSQDPDIINVQS 223 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv------------------~~~~~~~~~~~~~ 223 (513)
++.+...+.++ .+++|+|++|+|||||++.+++..... ...+++ ++.+.+.... .
T Consensus 18 l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 90 (171)
T cd03228 18 LKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--G 90 (171)
T ss_pred ccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--c
Confidence 33333334455 899999999999999999999886542 111111 1111111110 0
Q ss_pred HHHHHhCCCCCCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-cCCCCcEEEEEeCchHHHhhc
Q 044393 224 ELVKWLGWELKEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-IPANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~~~~~~~iivTtr~~~v~~~~ 295 (513)
++.+.+ .+.. ...-.+.. .+.. ++-+++||++.+..|.... . ....+..||++||+......
T Consensus 91 t~~e~l------LS~G~~~rl~la~--al~~-~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 91 TIRENI------LSGGQRQRIAIAR--ALLR-DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred hHHHHh------hCHHHHHHHHHHH--HHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 111111 1111 11112222 4444 7789999999988763321 1 11126789999999877654
Q ss_pred CCcceeec
Q 044393 296 GCDTRIKL 303 (513)
Q Consensus 296 ~~~~~~~l 303 (513)
+.+.+.+
T Consensus 161 -~d~~~~l 167 (171)
T cd03228 161 -ADRIIVL 167 (171)
T ss_pred -CCEEEEE
Confidence 4455544
No 132
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-05 Score=77.92 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=36.6
Q ss_pred ccchh-HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 155 FETTK-SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 155 ~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
|.+.+ ..++.+...+.+| ..|+|+|.+|+|||||++.+.+.+..+
T Consensus 346 y~~~~~~~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred cCCCccchhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 44444 5777777778888 899999999999999999999876553
No 133
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.00 E-value=0.0011 Score=65.48 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCeEEEEEEcCC---CChHHHHHHHHHHhCC--
Q 044393 158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDEVGIATVSQD---PDIINVQSELVKWLGW-- 231 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~-- 231 (513)
|.+..++|..||....-.+|.|.||-|+||+.|+ .++..+.+. +..+.+.+- .+-...+..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 4567889999998776689999999999999999 666665433 334443321 1222344444444332
Q ss_pred ---------------------CCCC--CC-HHHHHHH-------HHHHHHhc--------------------cCCeEEEE
Q 044393 232 ---------------------ELKE--KD-EEERADR-------LRLMFSES--------------------KGRKILII 260 (513)
Q Consensus 232 ---------------------~~~~--~~-~~~~~~~-------l~~~~~l~--------------------~~~~~LlV 260 (513)
...+ .+ +.+.... |+.+ .+. ..++=++|
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~i-al~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDI-ALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHH-HHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1111 11 1121111 1110 010 11244999
Q ss_pred EecCCCcc-----------cccccccCCCCcEEEEEeCchHHH----hhc--CCcceeecCCCChHhHHHHHHHhcCCCC
Q 044393 261 LDDVWKEL-----------DLETVGIPANCCKILLTTRLQQVC----DRM--GCDTRIKLDALDQAEGLDLLREHAGIDV 323 (513)
Q Consensus 261 LDd~~~~~-----------~~~~l~~~~~~~~iivTtr~~~v~----~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 323 (513)
+|+..... +|.......+-.+||++|-+.... ..+ ...+.+.|...+.+.|.++...+.....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 99985432 233322233356899999875443 333 2346789999999999999998886321
Q ss_pred CC-------------------CchHHHHHHHHHHhCCCchHHHHHHHHhcCC
Q 044393 324 AD-------------------TTLTDVSKRVADECKGLPLAIKVVGSALTGR 356 (513)
Q Consensus 324 ~~-------------------~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~ 356 (513)
.. ..........+..+||=-.=+..+++.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 10 1234456778888999989999999888854
No 134
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00021 Score=69.42 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=108.5
Q ss_pred cccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------CCCeEEEEEEcCCCC
Q 044393 152 FSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------IFDEVGIATVSQDPD 217 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------~f~~~~wv~~~~~~~ 217 (513)
+...+|.+...+.|...+.++.. +...++|+.|+||+++|..+++..-... ......|+.-.....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34567999999999999988874 7899999999999999999988764321 112223332110000
Q ss_pred hHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEe
Q 044393 218 IINVQSELVKWLGWE---LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTT 286 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~---~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTt 286 (513)
-...-..-+...+.. ......++.. .+...+.. ..+++-++|+|++..... +..+..|. .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 000001111111100 0111222222 22322221 124677999999865532 22233333 45566666
Q ss_pred Cch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 287 RLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 287 r~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
.+. .+...+. -...+++.+++.++..+.+.+....+. .......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 543 3333332 236899999999999999998753211 1112367899999999765543
No 135
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.96 E-value=2.9e-05 Score=71.42 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 14 ~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 14 VLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 344454445566 89999999999999999999887653
No 136
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=74.29 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.++.+...+.++ ..++|+|++|+|||||++.+..-....
T Consensus 19 ~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 19 ALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred eeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence 344444444555 899999999999999999998877654
No 137
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.95 E-value=6.5e-06 Score=74.27 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.+.+....
T Consensus 8 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 8 LKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred ecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999887643
No 138
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.95 E-value=2.7e-05 Score=70.29 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+-+..+..|.=.+..+ ..-+|+|++|+|||||++.+..+...
T Consensus 41 r~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 41 RNGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred ECCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCC
Confidence 34456777777667777 78899999999999999999877654
No 139
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.93 E-value=4.5e-05 Score=71.59 Aligned_cols=125 Identities=22% Similarity=0.227 Sum_probs=67.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHH--------------HHHHHHhCC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQ--------------SELVKWLGW 231 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~--------------~~i~~~l~~ 231 (513)
.+++|+|++|+|||||++.+++...... .++..-..++.+.. ++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 7999999999999999999998865431 11221112233322 222222 112222222
Q ss_pred CC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cC---CCCcEEEEEeCchHHHhhc
Q 044393 232 EL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IP---ANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 232 ~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~---~~~~~iivTtr~~~v~~~~ 295 (513)
.. ...+..+ ..-.+.. .+.. ++-+++||++....|..... .. ..+..||++||+...+..+
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iar--aL~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAA--CLSK-DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 11 0011111 1111222 3443 66799999999987744321 11 1278999999998766554
Q ss_pred CCcceeec
Q 044393 296 GCDTRIKL 303 (513)
Q Consensus 296 ~~~~~~~l 303 (513)
. .+.+.+
T Consensus 183 ~-d~i~~l 189 (246)
T cd03237 183 A-DRLIVF 189 (246)
T ss_pred C-CEEEEE
Confidence 2 244444
No 140
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.93 E-value=6.9e-05 Score=66.88 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=67.1
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE---EcCCCChHH------HHHHHHHHhCCCC-----
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT---VSQDPDIIN------VQSELVKWLGWEL----- 233 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~----- 233 (513)
.+.++ .+++|+|++|+|||||++.++...... ...+++. +. ..+... ...++++.++...
T Consensus 21 ~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~ 94 (180)
T cd03214 21 SIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRP 94 (180)
T ss_pred EECCC--CEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCC
Confidence 34455 899999999999999999999876542 2222221 11 111111 1112444444321
Q ss_pred -CCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCC-CcEEEEEeCchHHHhhc
Q 044393 234 -KEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PAN-CCKILLTTRLQQVCDRM 295 (513)
Q Consensus 234 -~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~-~~~iivTtr~~~v~~~~ 295 (513)
...+.. ...-.+.. .+.. .+-+++||++.+..|.... .. ... +..||++||+......+
T Consensus 95 ~~~LS~G~~qrl~lar--al~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 95 FNELSGGERQRVLLAR--ALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred cccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 111221 11222222 4444 7889999999988764332 11 112 67899999997765443
No 141
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.92 E-value=1.7e-05 Score=85.19 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 18 il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 18 LLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred eEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 445555555566 89999999999999999999987654
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00014 Score=75.65 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=92.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|..|+|||.|++.+++.......-..+.|++ ..++...+...+.. ... ..+.+ .+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~----~~~----~~f~~--~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD----GKG----DSFRR--RYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh----ccH----HHHHH--Hhh--
Confidence 4689999999999999999999876431122344543 23334444433321 011 11222 111
Q ss_pred CeEEEEEecCCCccc---cc-ccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKELD---LE-TVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~---~~-~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
+.-+|+|||+..... +. .+... ..+..|||||+.. .+...+...-.+.|.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 334899999965421 11 11111 1267788888852 233445555789999999999999999
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
+++..... .-.++++.-|++.+.+..-.|
T Consensus 457 kka~~r~l-~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQL-NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCC-CCCHHHHHHHHHhccCCHHHH
Confidence 88764322 222677888888887765443
No 143
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.92 E-value=6.2e-05 Score=70.06 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999987653
No 144
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.92 E-value=1.6e-05 Score=71.08 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 18 ~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 18 DVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred ceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 333334455 89999999999999999999987654
No 145
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.91 E-value=3.7e-05 Score=70.20 Aligned_cols=37 Identities=32% Similarity=0.606 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 16 LDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred eeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999987643
No 146
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.90 E-value=2.7e-05 Score=73.57 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 27 il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 27 VLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 445554445566 89999999999999999999987653
No 147
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=2.9e-05 Score=71.45 Aligned_cols=37 Identities=30% Similarity=0.543 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 15 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 15 ALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred eecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444445566 8999999999999999999998764
No 148
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00074 Score=65.39 Aligned_cols=173 Identities=16% Similarity=0.152 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCC----------------eEEEEEEcCCCChHH
Q 044393 158 TKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD----------------EVGIATVSQDPDIIN 220 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~----------------~~~wv~~~~~~~~~~ 220 (513)
.+...+.+...+.++.. +.+.+.|+.|+||+++|..++..+-...... ...|+.......
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~--- 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT--- 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc---
Confidence 34566778888877764 4689999999999999999987764321111 011221000000
Q ss_pred HHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-H
Q 044393 221 VQSELVKWLGWE-LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-Q 290 (513)
Q Consensus 221 ~~~~i~~~l~~~-~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~ 290 (513)
+.. ......++..+.. +.+.+ ..+++-++|+|+++.... +..+..|.+++.+|++|++. .
T Consensus 86 ---------~~k~~~~I~idqIR~l~-~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 86 ---------GDKLRTEIVIEQVREIS-QKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred ---------cccccccccHHHHHHHH-HHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence 000 0001122222222 21111 124667999999876532 44444555677777777753 3
Q ss_pred HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+...+. -...+.+.+++.+++.+.+... +. + ...+..++..++|.|+....+.
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 433332 2267899999999999888753 21 1 2346678999999999665443
No 149
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.89 E-value=2.6e-05 Score=75.80 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 9 l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 9 VDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred EeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444555 89999999999999999999987654
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00097 Score=60.81 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc-CCCChHHHHHHHHHHhCCCCCCC
Q 044393 158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS-QDPDIINVQSELVKWLGWELKEK 236 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~ 236 (513)
+.+.+..+...+..+ ..++.++|.-|+|||++.+.+......+ .+.-+.++ +..+...+...++..+..+ +..
T Consensus 36 h~e~l~~l~~~i~d~-qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~ 109 (269)
T COG3267 36 HNEALLMLHAAIADG-QGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQ-PKV 109 (269)
T ss_pred hhHHHHHHHHHHhcC-CceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccC-ccc
Confidence 455666676666655 2599999999999999999555554432 12223433 4445666777777777662 222
Q ss_pred CH----HHHHHHHHHHHHhccCCe-EEEEEecCCCcc--cccccccCC---C----CcEEEEEeCchH-------HHhhc
Q 044393 237 DE----EERADRLRLMFSESKGRK-ILIILDDVWKEL--DLETVGIPA---N----CCKILLTTRLQQ-------VCDRM 295 (513)
Q Consensus 237 ~~----~~~~~~l~~~~~l~~~~~-~LlVLDd~~~~~--~~~~l~~~~---~----~~~iivTtr~~~-------v~~~~ 295 (513)
.. ......+.. ...++++ ..++.||..... .++.+.... . .-+|+..-+.+- +....
T Consensus 110 ~~~~~~e~~~~~L~a--l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~ 187 (269)
T COG3267 110 NVNAVLEQIDRELAA--LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL 187 (269)
T ss_pred hhHHHHHHHHHHHHH--HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh
Confidence 22 223333333 2334566 999999985432 222222111 1 123454444321 11111
Q ss_pred -CCcce-eecCCCChHhHHHHHHHhcCCCCC--CCchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393 296 -GCDTR-IKLDALDQAEGLDLLREHAGIDVA--DTTLTDVSKRVADECKGLPLAIKVVGSA 352 (513)
Q Consensus 296 -~~~~~-~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~i~~~~~G~PLai~~~~~~ 352 (513)
.-... |.+.|++.++...++..+.+.... +-...+....|.....|.|.+|+.++..
T Consensus 188 ~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 188 EQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 11123 899999999999998887753221 2223667889999999999999888753
No 151
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=0.002 Score=63.69 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=124.8
Q ss_pred ccccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 151 FFSSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
..+...||+.+++.+..++.. ....-+-|.|-+|.|||.+...++.+......-..+++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 345577999999988888743 3457899999999999999999998887643333456676665556667777777
Q ss_pred HHhCC-CCCCCCHHHHHHHHHHHHHhccC-CeEEEEEecCCCcc-----ccccc--ccCCCCcEEEEEeCchH------H
Q 044393 227 KWLGW-ELKEKDEEERADRLRLMFSESKG-RKILIILDDVWKEL-----DLETV--GIPANCCKILLTTRLQQ------V 291 (513)
Q Consensus 227 ~~l~~-~~~~~~~~~~~~~l~~~~~l~~~-~~~LlVLDd~~~~~-----~~~~l--~~~~~~~~iivTtr~~~------v 291 (513)
..+-. ........+....+.. ...+. ..+|+|||+.+... .+-.+ ++..+++++|+.---.. +
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~--h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEK--HTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHH--HHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 66621 1111122333444444 33332 47899999985432 12222 13334777665544211 1
Q ss_pred HhhcC-----CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhc
Q 044393 292 CDRMG-----CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALT 354 (513)
Q Consensus 292 ~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~ 354 (513)
...+. ....+...|.+.++-.++|..+.............++-.+++|.|.-=-+..+..+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 2356788999999999999998865444444455667777777766554444444443
No 152
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=0.00032 Score=70.28 Aligned_cols=169 Identities=18% Similarity=0.159 Sum_probs=92.0
Q ss_pred cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|-+...+.|...+. . ..++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 3445566666666655442 1 124679999999999999999999876532 2 11111
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc---c---C
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG---I---P 276 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~---~---~ 276 (513)
. .+.... .+.........+ . ......+.+|+|||++... + +..+. . .
T Consensus 213 s----~l~~k~----~ge~~~~lr~lf-~--~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 S----EFVQKY----LGEGPRMVRDVF-R--LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred H----HHHHHh----cchhHHHHHHHH-H--HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1 111111 011111111111 1 2223478999999975321 0 11111 0 1
Q ss_pred CCCcEEEEEeCchHHHhh--c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 277 ANCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 277 ~~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
..+..||+||......+. + .....+.+...+.++-..+|+..........+ -....+++.+.|..-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~sg 352 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKISA 352 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCCH
Confidence 125678888886543221 1 22356889888999988888876643222211 124567777777654
No 153
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00097 Score=64.70 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC---CeE-----EEEEEcCCCChHHHHHHHHHHh
Q 044393 159 KSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF---DEV-----GIATVSQDPDIINVQSELVKWL 229 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i~~~l 229 (513)
....+.|...+.++.. +...+.|+.|+||+++|..++...--.... .|- .++..+..+|+..+..
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------ 81 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP------ 81 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc------
Confidence 4456778888877653 678899999999999999998876432111 000 0000001111000000
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHhhcC-Ccce
Q 044393 230 GWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCDRMG-CDTR 300 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~~~~-~~~~ 300 (513)
........++..+....+. .-..+++-++|+|++..... +..+..|.++..+|++|.+. .+...+. --..
T Consensus 82 -~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 -IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred -ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0001112233332222211 22235667888999876532 44444566677777777764 3443332 2368
Q ss_pred eecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 301 IKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
+.+.+++.++..+.+....+.. ...+...+..++|.|+..
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 9999999999999988764311 223567788999999644
No 154
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.88 E-value=1.2e-05 Score=78.13 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 21 ~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 21 LVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred EEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3555565556666 89999999999999999999987654
No 155
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.88 E-value=9.4e-06 Score=87.17 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 334 il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p 371 (635)
T PRK11147 334 LVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQA 371 (635)
T ss_pred EEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 455555455556 89999999999999999999987653
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.87 E-value=0.00036 Score=72.70 Aligned_cols=145 Identities=21% Similarity=0.180 Sum_probs=79.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
+-+.++||+|+|||+||+.+++..... ++.++.. ++. ... .+.........+. .....
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~~----~~~----~~~----~g~~~~~l~~~f~---~a~~~ 146 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGS----DFV----EMF----VGVGASRVRDLFE---QAKKN 146 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccHH----HHH----HHH----hcccHHHHHHHHH---HHHhc
Confidence 468899999999999999999876432 2222211 111 110 0111112222222 22234
Q ss_pred CeEEEEEecCCCccc----------------ccccc------cCCCCcEEEEEeCchHHHh-----hcCCcceeecCCCC
Q 044393 255 RKILIILDDVWKELD----------------LETVG------IPANCCKILLTTRLQQVCD-----RMGCDTRIKLDALD 307 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~----------------~~~l~------~~~~~~~iivTtr~~~v~~-----~~~~~~~~~l~~L~ 307 (513)
.+.+|+|||++.... +..+. ...++..||.||......+ .-.-...+.+...+
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 678999999854210 11111 0111456677776543211 11233678899999
Q ss_pred hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 308 ~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
.++-.++|+.+........ ......+++.+.|..
T Consensus 227 ~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence 9999999988775322111 223467888888854
No 157
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.87 E-value=9.6e-05 Score=68.12 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 19 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 19 LDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33444444555 89999999999999999999987643
No 158
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=5.6e-05 Score=70.69 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 16 LKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33444444556 89999999999999999999987653
No 159
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.87 E-value=0.0001 Score=67.71 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 17 l~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 17 LDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred ecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444444455 89999999999999999999987643
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.87 E-value=0.00033 Score=77.67 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=90.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcCCCChHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~ 224 (513)
+....+.+||+.++..+...|......-+.++|++|+|||+++..++......... ...+|.. ++ ..
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~----~~ 239 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DM----GA 239 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eH----HH
Confidence 44566789999999999999977766777899999999999999999887542111 2222221 11 11
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-CC--CcEEEEEeCchHHH
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-AN--CCKILLTTRLQQVC 292 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~~--~~~iivTtr~~~v~ 292 (513)
++. +....+.........+.. ....+++.+|++|++.... +...+..+ .. ...+|.+|..++.-
T Consensus 240 l~a--~~~~~g~~e~~l~~~l~~--~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 240 LIA--GAKYRGEFEERLKAVLNE--VTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred Hhh--cchhhhhHHHHHHHHHHH--HHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 110 011111111122222222 1122468999999986432 11122111 11 45666666554331
Q ss_pred hh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393 293 DR-------MGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 293 ~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
.. ......+.+...+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 1123568888889999999987654
No 161
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.87 E-value=3.1e-05 Score=68.90 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=72.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW 228 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (513)
|......+|.+..++.|.-...+++.+-+.|.||+|+||||-+..+++.+-...+-+.+.-.+.|.+..+.-+-..| +.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I-K~ 101 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI-KM 101 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH-HH
Confidence 45566678999999999988899999999999999999999999998888765444555555555544433222222 11
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc
Q 044393 229 LGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL 268 (513)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~ 268 (513)
+ .++-..+..|+.-++|||+.++..
T Consensus 102 F---------------AQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 102 F---------------AQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred H---------------HHhhccCCCCceeEEEeeccchhh
Confidence 1 111114555788899999997763
No 162
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.2e-05 Score=82.64 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 16 LFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred eEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445556 89999999999999999999987653
No 163
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.86 E-value=2.6e-05 Score=71.71 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 26 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 26 VFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred eeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 445555555566 89999999999999999999987653
No 164
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.85 E-value=0.00021 Score=73.32 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=86.1
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeEEEEEEcCC
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEVGIATVSQD 215 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~ 215 (513)
+....|.+..++.+...+.- ...+-+.++||+|+|||++|+.+++....... .....++++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 34455677777777766521 12356899999999999999999998754311 112333433321
Q ss_pred CChHHHHHHHHHHhCCCCCCCCHHH---HHHHHHHHHHhccCCeEEEEEecCCCcc---------c-----cccccc---
Q 044393 216 PDIINVQSELVKWLGWELKEKDEEE---RADRLRLMFSESKGRKILIILDDVWKEL---------D-----LETVGI--- 275 (513)
Q Consensus 216 ~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~-----~~~l~~--- 275 (513)
. ++.. ..+..... .....+. ....+++++|+||+++... + +..+..
T Consensus 261 e--------Ll~k----yvGete~~ir~iF~~Ar~--~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 E--------LLNK----YVGETERQIRLIFQRARE--KASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h--------hccc----ccchHHHHHHHHHHHHHH--HhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1 1100 01111111 1111111 2233578999999996431 1 111111
Q ss_pred ---CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCC
Q 044393 276 ---PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGI 321 (513)
Q Consensus 276 ---~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 321 (513)
..++..||.||......+. + .....+++...+.++..++|+.+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1124556666665433221 1 22356899999999999999988753
No 165
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=4e-05 Score=70.86 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 15 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 15 AVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred eeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445556 89999999999999999999987643
No 166
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.85 E-value=0.0001 Score=69.51 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=68.3
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-EEEEEEcCCCCh--------HH-----------HHHHH
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-VGIATVSQDPDI--------IN-----------VQSEL 225 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-~~wv~~~~~~~~--------~~-----------~~~~i 225 (513)
+..+ .+++|+|++|+|||||++.++........ ++. ....++.+.+.. .. ....+
T Consensus 27 i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T PRK09544 27 LKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA 104 (251)
T ss_pred EcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence 3455 89999999999999999999987654210 110 011222332211 11 11222
Q ss_pred HHHhCCCC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCC-CcEEEEEeCch
Q 044393 226 VKWLGWEL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PAN-CCKILLTTRLQ 289 (513)
Q Consensus 226 ~~~l~~~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~-~~~iivTtr~~ 289 (513)
++.++... ...+..+ ..-.+.. .+.. ++-+++||++.+..|.... .. ... +..||++||+.
T Consensus 105 l~~~gl~~~~~~~~~~LSgGq~qrv~lar--al~~-~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 105 LKRVQAGHLIDAPMQKLSGGETQRVLLAR--ALLN-RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred HHHcCChHHHhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 33333211 0011111 1111222 3333 6679999999998774332 11 112 67899999998
Q ss_pred HHHhhcCCcceeecC
Q 044393 290 QVCDRMGCDTRIKLD 304 (513)
Q Consensus 290 ~v~~~~~~~~~~~l~ 304 (513)
....... .+.+.+.
T Consensus 182 ~~i~~~~-d~i~~l~ 195 (251)
T PRK09544 182 HLVMAKT-DEVLCLN 195 (251)
T ss_pred HHHHHhC-CEEEEEC
Confidence 7665442 2444443
No 167
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.85 E-value=7.8e-05 Score=68.20 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+.+...
T Consensus 18 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 18 FSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33333334455 8999999999999999999998764
No 168
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=8.5e-05 Score=68.12 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.6
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.++ .+++|+|++|+|||||++.++.....
T Consensus 23 i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 23 VEKG--EIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred EcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4455 89999999999999999999987643
No 169
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.84 E-value=3.2e-05 Score=73.02 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+.++ .+++|+|++|+|||||++.++...
T Consensus 17 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 17 LRGLNLEVRPG--EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred eecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCc
Confidence 34444444555 899999999999999999999873
No 170
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=4.1e-05 Score=68.19 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 17 ~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 17 NDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999987653
No 171
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=0.00011 Score=69.58 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 17 LEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999987653
No 172
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.83 E-value=1.7e-05 Score=77.11 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.+....
T Consensus 19 ~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 19 VVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred EEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 445555555666 89999999999999999999987643
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.83 E-value=0.00021 Score=78.85 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=88.8
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEE-EEEEcCCCChHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVG-IATVSQDPDIINVQS 223 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~-wv~~~~~~~~~~~~~ 223 (513)
+....+++||+.++..++..|......-+.++|++|+|||++|+.++........ ....+ .+.++. +
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l-- 245 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L-- 245 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h--
Confidence 4556778999999999999998776677889999999999999999988753211 11222 222221 0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-C--CCcEEEEEeCchHH
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-A--NCCKILLTTRLQQV 291 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~--~~~~iivTtr~~~v 291 (513)
+. +....+.........+.. ....+++.+|++|++.... +...+..+ . +..++|-+|..++.
T Consensus 246 --~a--g~~~~g~~e~~lk~~~~~--~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 246 --VA--GAKYRGEFEERLKGVLND--LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred --hh--ccchhhhhHHHHHHHHHH--HHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 00 001111111122222222 1122478999999985442 12222222 1 14566666665443
Q ss_pred Hhh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393 292 CDR-------MGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 292 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
-.. ......+.+...+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111 1112356666668888888886554
No 174
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=6.9e-05 Score=72.70 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 23 l~~vsl~i~~G--e~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 23 LDNVSVEINQG--EFIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred eeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999987643
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00036 Score=71.10 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=87.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|+.|+|||+|++.+++..... ...+++++ ...+...+...+... . ....+. ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~----~----~~~f~~---~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG----E----MQRFRQ---FYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc----h----HHHHHH---Hcc-
Confidence 568999999999999999999988643 22234443 223334444443211 1 111222 122
Q ss_pred CeEEEEEecCCCccc----ccccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393 255 RKILIILDDVWKELD----LETVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR 316 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~----~~~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (513)
..-+|++||+..... .+.+... ..|..||+||... .+...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 445899999855321 1111111 1266788888642 222333444688999999999999999
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 317 EHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
+.+.... ..-.+++..-|+..+.|.-
T Consensus 282 ~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 8775332 1222566676777777554
No 176
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.81 E-value=2.7e-05 Score=84.44 Aligned_cols=185 Identities=16% Similarity=0.142 Sum_probs=89.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh-hhc-CCC-Ce---EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL-RQE-KIF-DE---VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRL 247 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~-~~~-~~f-~~---~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 247 (513)
.++++|+||+|.|||||.+.+.... ..+ +.| .. ....++.+.+.....-..+.+.+.. -+ .+.. .+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt----fS-~~m~-~~~~ 395 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST----FS-GHMK-NISA 395 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhH----HH-HHHH-HHHH
Confidence 3799999999999999999998762 221 111 00 0000011111000000111111100 00 1111 1222
Q ss_pred HHHhccCCeEEEEEecCCCccccccc-------cc--CCCCcEEEEEeCchHHHhhcCCcceeecCCCChH-hHHHHHHH
Q 044393 248 MFSESKGRKILIILDDVWKELDLETV-------GI--PANCCKILLTTRLQQVCDRMGCDTRIKLDALDQA-EGLDLLRE 317 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~~~~~~~~~l-------~~--~~~~~~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~ 317 (513)
++... ..+-|++||++....|...- .. ...|+.+|+|||...+.........+.-..+..+ +... +..
T Consensus 396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 22222 37899999999876553221 11 1138899999999876543211111111111111 1100 111
Q ss_pred hcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhh
Q 044393 318 HAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQN 370 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~ 370 (513)
+.-...+. ...|-.|++++ |+|-.+..-|..+..........+++.|..
T Consensus 474 kl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 474 KLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred EECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111 34577788777 888888888877765555566666666654
No 177
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.80 E-value=0.00013 Score=67.57 Aligned_cols=29 Identities=41% Similarity=0.645 Sum_probs=25.2
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.++ .+++|+|++|+|||||++.+.+...
T Consensus 23 i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 23 VPKN--SVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4455 8999999999999999999998764
No 178
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.80 E-value=0.00017 Score=66.88 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 24 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 24 LKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999987643
No 179
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.80 E-value=2.6e-05 Score=73.70 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 18 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 18 VLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444455445566 8999999999999999999988754
No 180
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=0.0003 Score=71.09 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=93.7
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 151 FFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
.+....|.+..++.|...+.- ....-+.++|++|+|||+||+.+++..... | +.+... +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s-e 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS-E 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc-h
Confidence 334455777777777665521 123578899999999999999999976532 3 222111 1
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc----------------ccccc------
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD----------------LETVG------ 274 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~----------------~~~l~------ 274 (513)
+ .... .+.... .++.++ ....+.+.+|+||++..... +..+.
T Consensus 253 ---L----~~k~----~Ge~~~----~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 ---L----IQKY----LGDGPK----LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ---h----hhhh----cchHHH----HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 1 1110 011111 122211 22234788999999743210 01111
Q ss_pred cCCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 275 IPANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 275 ~~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
....+..||+||+.....+. + .....+.+...+.++..++|..+......... -....++..+.|+--
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~sg 390 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDELSG 390 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCCCH
Confidence 01126688888886544332 1 12367899999999999999977643221111 123556667766654
No 181
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.80 E-value=2.8e-05 Score=82.26 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 21 ~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~p 59 (556)
T PRK11819 21 QILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKE 59 (556)
T ss_pred eeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3455555555666 89999999999999999999998754
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0026 Score=61.56 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeEEEEEEcCCCCh
Q 044393 159 KSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEVGIATVSQDPDI 218 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~ 218 (513)
....+.+...+..+.. +.+.+.|+.|+||+++|..++...--.. |.| ..|+.-...
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~--- 84 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE--- 84 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC---
Confidence 4456677777777653 5789999999999999999987664221 111 112211000
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ- 289 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~- 289 (513)
......++... +...+. -..++.-++|+|++..... +..+..|.+++.+|++|.+.
T Consensus 85 --------------~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 85 --------------GKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred --------------CCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00112233322 222111 1224566889999866532 44444555677777776664
Q ss_pred HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHH
Q 044393 290 QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKL 368 (513)
Q Consensus 290 ~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l 368 (513)
.+...+. --..+.+.+++.+++.+.+.... . . ....++..++|.|+....+ +........+.++..+
T Consensus 150 ~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-~---~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 150 RLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-I---T-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred hChHHHHhcceeEeCCCCCHHHHHHHHHHcC-C---c-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 4444432 23688999999999999887541 1 1 2356789999999976544 3333333444444444
Q ss_pred h
Q 044393 369 Q 369 (513)
Q Consensus 369 ~ 369 (513)
.
T Consensus 218 ~ 218 (319)
T PRK06090 218 V 218 (319)
T ss_pred H
Confidence 3
No 183
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.79 E-value=0.00012 Score=66.82 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 17 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 17 FSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444445556 89999999999999999999987653
No 184
>CHL00181 cbbX CbbX; Provisional
Probab=97.79 E-value=0.00054 Score=65.70 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=69.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.++|++|+||||+|+.+++.....+.-....|+.++.. + +...+.. .........+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g----~~~~~~~~~l~----~a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIG----HTAPKTKEVLK----KA-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhc----cchHHHHHHHH----Hc--
Confidence 45889999999999999999887654322222224444411 1 2221111 11111112222 11
Q ss_pred CeEEEEEecCCCc-----------ccccccc---cC-CCCcEEEEEeCchHHHhh--------cCCcceeecCCCChHhH
Q 044393 255 RKILIILDDVWKE-----------LDLETVG---IP-ANCCKILLTTRLQQVCDR--------MGCDTRIKLDALDQAEG 311 (513)
Q Consensus 255 ~~~LlVLDd~~~~-----------~~~~~l~---~~-~~~~~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~ 311 (513)
..-+|+||++... .....+. .. ..+..||+++........ -.....+.+++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999998642 0111111 11 125667777754332111 11235799999999999
Q ss_pred HHHHHHhcC
Q 044393 312 LDLLREHAG 320 (513)
Q Consensus 312 ~~lf~~~~~ 320 (513)
.+++...+.
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 999988774
No 185
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=0.0001 Score=68.85 Aligned_cols=37 Identities=27% Similarity=0.537 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 21 l~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 21 LKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred eecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999887654
No 186
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.79 E-value=3.4e-05 Score=72.10 Aligned_cols=37 Identities=38% Similarity=0.583 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 36 il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 36 ALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344444444555 8999999999999999999998764
No 187
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.79 E-value=2.7e-05 Score=72.26 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 22 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 22 ILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred eeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccC
Confidence 445554445556 8999999999999999999998754
No 188
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.79 E-value=2.8e-05 Score=71.52 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 16 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 16 LDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444556 8999999999999999999998764
No 189
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.79 E-value=2.1e-05 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
...++++.-.+..+ ..++++|++|+||||+.+++.+-.+..
T Consensus 14 ~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 14 KKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred ceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 34445555555556 899999999999999999998877653
No 190
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.79 E-value=0.00011 Score=67.21 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 17 ~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 17 DDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred eeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3333334455 8999999999999999999988654
No 191
>PRK08181 transposase; Validated
Probab=97.78 E-value=0.00021 Score=67.48 Aligned_cols=36 Identities=33% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
....|+..+ .-+.++|++|+|||.||..+++.....
T Consensus 98 ~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 98 AGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred HHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 333566655 679999999999999999999877543
No 192
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.78 E-value=0.00024 Score=69.37 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=66.3
Q ss_pred HHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCC-CChHHHHHHHHHHhCCCCCCCCHH
Q 044393 163 NQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQD-PDIINVQSELVKWLGWELKEKDEE 239 (513)
Q Consensus 163 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 239 (513)
..+++.+.. +..+.+.|+|++|+|||||++.+++..... +-+. .+|+.+.+. .++.++.+.+...+..+....+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 345565543 444899999999999999999999987654 2233 366666654 466778888877766544333222
Q ss_pred HH------HHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 240 ER------ADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 240 ~~------~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.. .....+.+. ..|++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~-~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLV-EQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCEEEEEeCcHHH
Confidence 21 112222222 3469999999998543
No 193
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.78 E-value=0.00022 Score=68.46 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=69.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
.-+.++|++|+||||+|+.++............-++.++. .+ ++..+. +.+.......+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~----g~~~~~~~~~~~---~a--- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYI----GHTAPKTKEILK---RA--- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhc----ccchHHHHHHHH---Hc---
Confidence 3588999999999999999888776543222222444442 11 221111 111112222222 11
Q ss_pred CeEEEEEecCCCcc------cc-----ccc---ccC-CCCcEEEEEeCchHHHhhc--------CCcceeecCCCChHhH
Q 044393 255 RKILIILDDVWKEL------DL-----ETV---GIP-ANCCKILLTTRLQQVCDRM--------GCDTRIKLDALDQAEG 311 (513)
Q Consensus 255 ~~~LlVLDd~~~~~------~~-----~~l---~~~-~~~~~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~e~ 311 (513)
..-+|+|||+.... ++ ..+ ... ..+.+||+++.....-... .....+.+++++.++-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 33599999986320 11 111 111 1256677776543221111 1135789999999999
Q ss_pred HHHHHHhcC
Q 044393 312 LDLLREHAG 320 (513)
Q Consensus 312 ~~lf~~~~~ 320 (513)
.+++...+.
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999888764
No 194
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.78 E-value=9.7e-05 Score=68.40 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 16 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 16 LFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33344444555 8999999999999999999987764
No 195
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.78 E-value=3.4e-05 Score=71.15 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-----EEcCCCChHHHHHHHHHHhCCCCC-
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-----TVSQDPDIINVQSELVKWLGWELK- 234 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~~~~i~~~l~~~~~- 234 (513)
.++.+...+.++ .+++|+|.+|+|||||++.+..-.+.. ...+.|- ..+ .....+...++++.++....
T Consensus 28 avd~Vsf~i~~g--e~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~ 102 (268)
T COG4608 28 AVDGVSFSIKEG--ETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEF 102 (268)
T ss_pred EecceeEEEcCC--CEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHH
Confidence 344555555666 899999999999999999999988754 2222221 111 11233445666666664321
Q ss_pred ------CCCHHHHHH-HHHHHHHhccCCeEEEEEecCCCcccccc---c---ccCCC---CcEEEEEeCchHHHhhcCC
Q 044393 235 ------EKDEEERAD-RLRLMFSESKGRKILIILDDVWKELDLET---V---GIPAN---CCKILLTTRLQQVCDRMGC 297 (513)
Q Consensus 235 ------~~~~~~~~~-~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l---~~~~~---~~~iivTtr~~~v~~~~~~ 297 (513)
+-+-.+++. .+.. .+. -++-++|.|++.+.+|... + ..... |...++.||+-.+...+..
T Consensus 103 ~~ryPhelSGGQrQRi~IAR--ALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIAR--ALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhcCCcccCchhhhhHHHHH--HHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 111112211 1222 333 3888999999988876421 1 11111 8899999999988887654
No 196
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=9.4e-05 Score=66.76 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh--h-cC--CCCe--------EEEEEEcCCCCh---HHHHHHHH
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR--Q-EK--IFDE--------VGIATVSQDPDI---INVQSELV 226 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~--~-~~--~f~~--------~~wv~~~~~~~~---~~~~~~i~ 226 (513)
+.+...+..+ .+++|+|++|+|||||++.++.... . .+ .|+. ....++.+.+.. ..+...+.
T Consensus 24 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 24 NNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred EccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence 3333334455 8999999999999999999997532 1 11 1110 112233333221 12222221
Q ss_pred HHhCCCCCCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCCCcEEEEEeCchH
Q 044393 227 KWLGWELKEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PANCCKILLTTRLQQ 290 (513)
Q Consensus 227 ~~l~~~~~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~~~~iivTtr~~~ 290 (513)
-.... ...+.. ...-.+.. .+.. ++-++++|++....|.... .. ...+..||++||+..
T Consensus 102 ~~~~~--~~LSgGe~qrv~la~--al~~-~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 102 FSALL--RGLSVEQRKRLTIGV--ELAA-KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHH--hcCCHHHhHHHHHHH--HHhc-CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 11000 012211 11222222 4444 7789999999888763321 11 112789999999875
No 197
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=5.8e-05 Score=65.73 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=61.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhcc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLRLMFSESK 253 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~ 253 (513)
.+++|+|++|+|||||++.+.+.... ....+++.-...... ........++.... .+. +...-.+.. .+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~--~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALAR--ALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHH--HHhc
Confidence 89999999999999999999987653 233333221111000 00011111111000 111 122222222 4444
Q ss_pred CCeEEEEEecCCCcccccccc------c--CCCCcEEEEEeCchHHHhhc
Q 044393 254 GRKILIILDDVWKELDLETVG------I--PANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~~~~l~------~--~~~~~~iivTtr~~~v~~~~ 295 (513)
++-++++|++....|..... . ...+..++++||+.......
T Consensus 98 -~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 -NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 67899999999887643321 1 11257899999998776654
No 198
>CHL00176 ftsH cell division protein; Validated
Probab=97.78 E-value=0.00027 Score=74.89 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
+-+.++||+|+|||+||+.+++..... +++++.. .+.. .+ .+.........+. .....
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~f~~----~~----~g~~~~~vr~lF~---~A~~~ 274 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----EFVE----MF----VGVGAARVRDLFK---KAKEN 274 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----HHHH----Hh----hhhhHHHHHHHHH---HHhcC
Confidence 468999999999999999999876432 2322211 1100 00 0011111122222 33345
Q ss_pred CeEEEEEecCCCcc----------------ccccccc------CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCC
Q 044393 255 RKILIILDDVWKEL----------------DLETVGI------PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALD 307 (513)
Q Consensus 255 ~~~LlVLDd~~~~~----------------~~~~l~~------~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~ 307 (513)
.+++|+|||+.... .+..+.. ...+..||.||......+. + .....+.+...+
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 88999999995431 0111210 1125667777776543221 1 123678888899
Q ss_pred hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 308 ~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
.++-.++++.++...... .......+++.+.|..
T Consensus 355 ~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 355 REGRLDILKVHARNKKLS--PDVSLELIARRTPGFS 388 (638)
T ss_pred HHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCCCC
Confidence 999999998887542211 1344677888888843
No 199
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.78 E-value=1.8e-05 Score=77.84 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
|....++.+...+..+ .+++|+|++|+|||||++.+.+....
T Consensus 52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4334555555555666 89999999999999999999987654
No 200
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=9e-05 Score=68.98 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.+....
T Consensus 18 ~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 18 VLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 344444444556 89999999999999999999987653
No 201
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.77 E-value=9.6e-05 Score=68.74 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 26 l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 26 LTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34444444556 8999999999999999999998764
No 202
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.77 E-value=4.2e-05 Score=69.13 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh--hhcC---CCCe---------EEEEEEcCCCCh---HHHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL--RQEK---IFDE---------VGIATVSQDPDI---INVQS 223 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~---~f~~---------~~wv~~~~~~~~---~~~~~ 223 (513)
.++.+...+.++ .+++|.|++|+|||||++.+++.. .... .|+. ....++.+.+.. ..+..
T Consensus 24 ~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 24 LLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 444444445556 899999999999999999999876 4321 0110 011223333221 12222
Q ss_pred HHHHHhCCCCCCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchH
Q 044393 224 ELVKWLGWELKEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQ 290 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~ 290 (513)
.+.-.... ...+. +...-.+.. .+.. ++-++++|++.+..|.... . . ...+..||++||+..
T Consensus 102 ~i~~~~~~--~~LS~G~~qrv~lar--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 102 TLMFAAKL--RGLSGGERKRVSIAL--ELVS-NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHh--ccCCHHHHHHHHHHH--HHHc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 22211100 01222 112222222 4444 7779999999988764322 1 1 112789999999864
No 203
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=2.8e-05 Score=73.08 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 17 il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 17 ALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred eEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334444444556 89999999999999999999987653
No 204
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.77 E-value=5.1e-05 Score=70.83 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 15 ~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 15 VVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred eeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344555555566 89999999999999999999987643
No 205
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.77 E-value=4.7e-05 Score=76.01 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=33.8
Q ss_pred HhccCCeEEEEEecCCCccccccccc------CCCCcEEEEEeCchHHHhhcCC
Q 044393 250 SESKGRKILIILDDVWKELDLETVGI------PANCCKILLTTRLQQVCDRMGC 297 (513)
Q Consensus 250 ~l~~~~~~LlVLDd~~~~~~~~~l~~------~~~~~~iivTtr~~~v~~~~~~ 297 (513)
.+.. ++.||.||++.+++|++.+.- ......++|++|+++..+.+++
T Consensus 235 ~Lf~-kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 235 ALFQ-KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHhc-CCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhh
Confidence 4454 788999999999999777531 1112279999999877666533
No 206
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=2.9e-05 Score=74.25 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 16 VLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 444554445556 89999999999999999999887643
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.76 E-value=0.00069 Score=69.55 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+-|.++||+|+|||.+|+.+++..... | +-+..+. +. ...-+.+.......+. ....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~----~~~vGese~~l~~~f~---~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LF----GGIVGESESRMRQMIR---IAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hc----ccccChHHHHHHHHHH---HHHh
Confidence 4678999999999999999999987532 2 1111111 10 1111112222222222 2223
Q ss_pred CCeEEEEEecCCCccc--------------ccccc----cCCCCcEEEEEeCchHHH-hhc----CCcceeecCCCChHh
Q 044393 254 GRKILIILDDVWKELD--------------LETVG----IPANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQAE 310 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~--------------~~~l~----~~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~e 310 (513)
..+++|++|+++.... +..+. ....+.-||.||....-. ..+ .....+.+...+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 4789999999864210 00010 011144566677654321 111 234678888889999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 311 GLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 311 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
-.++|+.+................+++.+.|..-
T Consensus 397 R~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 9999988775322111111234567777766543
No 208
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.76 E-value=0.00014 Score=67.18 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 21 l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 21 VDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred ecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34444444455 89999999999999999999987643
No 209
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.76 E-value=0.00014 Score=66.92 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 18 ~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 18 DGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3333334455 89999999999999999999987643
No 210
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=4.5e-05 Score=80.33 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCe-EEEEEEcCCC--------ChHHH------
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDE-VGIATVSQDP--------DIINV------ 221 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~-~~wv~~~~~~--------~~~~~------ 221 (513)
..++.+...+..+ .+++|+|++|+|||||++.++....... .|+. ....++++.. ++.+.
T Consensus 333 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 333 PLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred eeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 3455555445556 8999999999999999999998765321 1211 1123334332 11111
Q ss_pred -------HHHHHHHhCCCC-------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCc
Q 044393 222 -------QSELVKWLGWEL-------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCC 280 (513)
Q Consensus 222 -------~~~i~~~l~~~~-------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~ 280 (513)
...++..++... ...+. ....-.+.. .+.. ++-+|+||++.+..|.... .... +.
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~--al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~ 486 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGK--LMMQ-KPNVLVMDEPTNHMDMESIESLNMALEKY-EG 486 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC
Confidence 112222332210 00011 111111111 3333 6669999999998874432 1112 45
Q ss_pred EEEEEeCchHHHhhcCCcceeec
Q 044393 281 KILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 281 ~iivTtr~~~v~~~~~~~~~~~l 303 (513)
.||++||+......+. .+.+.+
T Consensus 487 tvi~vsHd~~~~~~~~-d~i~~l 508 (530)
T PRK15064 487 TLIFVSHDREFVSSLA-TRIIEI 508 (530)
T ss_pred EEEEEeCCHHHHHHhC-CEEEEE
Confidence 8999999988766553 344444
No 211
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.76 E-value=4.7e-05 Score=80.34 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.+| ..++|+|++|+|||||++.+.+...+
T Consensus 349 ~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 349 PVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3556666556667 89999999999999999999887754
No 212
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=1.1e-05 Score=79.94 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=78.2
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe---EE--EEEEcC-----------
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE---VG--IATVSQ----------- 214 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~---~~--wv~~~~----------- 214 (513)
.+.-.+|-...+..-.-.|..+ +.-+++|++|+|||||.+.+.+-.- ..|.. +. .+...+
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~~~~~l~~D~~~~d 160 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEALQSVLESDTERLD 160 (582)
T ss_pred eeeeeecchhhhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHHHhhhhhccHHHHH
Confidence 3444556444444333334445 8899999999999999999998211 11221 10 110000
Q ss_pred ----C------CChHHHHHHHHHHhCCCCCC-----CCH-HH--HHHHHHHHHHhccCCeEEEEEecCCCcccccccccC
Q 044393 215 ----D------PDIINVQSELVKWLGWELKE-----KDE-EE--RADRLRLMFSESKGRKILIILDDVWKELDLETVGIP 276 (513)
Q Consensus 215 ----~------~~~~~~~~~i~~~l~~~~~~-----~~~-~~--~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~ 276 (513)
. ....++...++..+|-..+. .+. .. +.-.|.+ .+.. ++=||.||+++|++|...+.-.
T Consensus 161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLAR--Alf~-~pDlLLLDEPTNhLDv~av~WL 237 (582)
T KOG0062|consen 161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALAR--ALFA-KPDLLLLDEPTNHLDVVAVAWL 237 (582)
T ss_pred HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHH--HHhc-CCCEEeecCCcccchhHHHHHH
Confidence 0 01122233344444432110 000 11 1122222 4444 7779999999999997665321
Q ss_pred CC-----CcEEEEEeCchHHHhhcCCcceeecC
Q 044393 277 AN-----CCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 277 ~~-----~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
.+ +..+||+||+..+.+.+.+ .+|+++
T Consensus 238 e~yL~t~~~T~liVSHDr~FLn~V~t-dIIH~~ 269 (582)
T KOG0062|consen 238 ENYLQTWKITSLIVSHDRNFLNTVCT-DIIHLE 269 (582)
T ss_pred HHHHhhCCceEEEEeccHHHHHHHHH-HHHHHh
Confidence 11 5899999999988776533 334443
No 213
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.75 E-value=0.00013 Score=69.89 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=27.0
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 26 vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 26 ASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred eEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33334455 89999999999999999999887643
No 214
>PRK13409 putative ATPase RIL; Provisional
Probab=97.75 E-value=0.00019 Score=75.98 Aligned_cols=130 Identities=23% Similarity=0.290 Sum_probs=71.7
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeEEEEEEcCCC------ChHHHH-------------HHHH
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEVGIATVSQDP------DIINVQ-------------SELV 226 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~------~~~~~~-------------~~i~ 226 (513)
+..+ .+++|+|++|+|||||++.++........ ++ .-..++++.. ++.+.+ .+++
T Consensus 362 i~~G--eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 362 IYEG--EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred ECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 3445 89999999999999999999987754311 11 1122334432 122211 1222
Q ss_pred HHhCCCC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cC--C-CCcEEEEEeCchH
Q 044393 227 KWLGWEL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IP--A-NCCKILLTTRLQQ 290 (513)
Q Consensus 227 ~~l~~~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~--~-~~~~iivTtr~~~ 290 (513)
+.++... ...+..+ ..-.+.. .+.. ++-+++||++.+.+|..... .. . .|..||++||+..
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAr--aL~~-~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGELQRVAIAA--CLSR-DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2332210 0111111 1111222 3333 67799999999998754321 11 1 2789999999988
Q ss_pred HHhhcCCcceeecCC
Q 044393 291 VCDRMGCDTRIKLDA 305 (513)
Q Consensus 291 v~~~~~~~~~~~l~~ 305 (513)
.+..+. ++.+.+.+
T Consensus 516 ~~~~~a-Drvivl~~ 529 (590)
T PRK13409 516 MIDYIS-DRLMVFEG 529 (590)
T ss_pred HHHHhC-CEEEEEcC
Confidence 776653 35555543
No 215
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.75 E-value=5e-05 Score=69.01 Aligned_cols=126 Identities=23% Similarity=0.293 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh--hhc-C--CCCe-------------EEEEEEcCCCChH--H
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL--RQE-K--IFDE-------------VGIATVSQDPDII--N 220 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~--~~~-~--~f~~-------------~~wv~~~~~~~~~--~ 220 (513)
.++.+...+..+ .+++|+|++|+|||||++.++... ... + .|+. ....++.+.+... .
T Consensus 15 ~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 15 ILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred eeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 344444445556 899999999999999999999873 211 0 0000 0012233332211 1
Q ss_pred HHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHH
Q 044393 221 VQSELVKWLGWELKEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQV 291 (513)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v 291 (513)
...+++.... ...+..+ ..-.+.. .+.. ++-+++||++.+..|.... . . ...+..||++||+...
T Consensus 93 ~~~~~l~~~~---~~LS~G~~qrv~lar--al~~-~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 93 KNADFLRYVN---EGFSGGEKKRNEILQ--LLLL-EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred cHHHHHhhcc---ccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 1122221111 1122222 2222222 4444 7789999999988763221 1 1 1127899999999876
Q ss_pred Hhh
Q 044393 292 CDR 294 (513)
Q Consensus 292 ~~~ 294 (513)
...
T Consensus 167 ~~~ 169 (200)
T cd03217 167 LDY 169 (200)
T ss_pred HHH
Confidence 654
No 216
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.75 E-value=4.1e-05 Score=70.12 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh--hhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----CCCHHHHHHHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL--RQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK----EKDEEERADRLRL 247 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 247 (513)
.+++.|+|++|.|||||.+.+.... ...+.|.......++ .+.++...++.... ..+-......+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 3889999999999999999987432 222222110000000 11111111111100 0111111222222
Q ss_pred HHHhccCCeEEEEEecCCCcccccc-------cc---cCC-C-CcEEEEEeCchHHHhhc
Q 044393 248 MFSESKGRKILIILDDVWKELDLET-------VG---IPA-N-CCKILLTTRLQQVCDRM 295 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~~~~~~~~~-------l~---~~~-~-~~~iivTtr~~~v~~~~ 295 (513)
.+.+. .++.|++||++....+... +. ... . +..+|+|||+.+++...
T Consensus 102 ~l~~~-~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLA-TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhC-CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 22333 3789999999977654321 11 111 1 35899999998876654
No 217
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.75 E-value=5.2e-05 Score=71.30 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++.
T Consensus 15 ~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 344444445556 89999999999999999999987
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0016 Score=63.83 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCC---CeE-----EEEEEcCCCChHHHHHHHHHHh
Q 044393 159 KSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF---DEV-----GIATVSQDPDIINVQSELVKWL 229 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i~~~l 229 (513)
+...+++...+.++. .+.+.+.|+.|+||+|+|..++..+--.... .|- .++.....+|+..+.-
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------ 81 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------ 81 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------
Confidence 455677888887765 4678899999999999999988876321100 000 0000000111000000
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHhhcC-Ccce
Q 044393 230 GWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCDRMG-CDTR 300 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~~~~-~~~~ 300 (513)
.........++..+....+. .-..+++-++|+|+++.... +..+..|.++..+|++|.+. .+...+. -...
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 00001122333333222211 12235777999998866532 44445566677777777764 3444432 2257
Q ss_pred eecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 301 IKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
+.+.+++.+++.+.+....+. + .+.+..++..++|.|....
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHHH
Confidence 899999999999888754321 1 3446788999999997443
No 219
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.00013 Score=67.48 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 21 ~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 21 EDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred eceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3343444556 89999999999999999999987643
No 220
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.00039 Score=69.92 Aligned_cols=133 Identities=21% Similarity=0.165 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK 236 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 236 (513)
.+...+.++...+..... ++.|.||-++|||||++.+....... .++++..+......-+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH--------------
Confidence 344556666666666632 99999999999999997776665443 4444433322111111
Q ss_pred CHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC---CcEEEEEeCchHH-----Hhhc-CCcceeecCCCC
Q 044393 237 DEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN---CCKILLTTRLQQV-----CDRM-GCDTRIKLDALD 307 (513)
Q Consensus 237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~---~~~iivTtr~~~v-----~~~~-~~~~~~~l~~L~ 307 (513)
.+.+..+..+...++.+++||++....+|.......- ..+|++|+-+... +..+ +-...+++.|||
T Consensus 81 -----~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 81 -----LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1112221122222778999999999999877542221 1268888776443 2222 223678999999
Q ss_pred hHhHHHH
Q 044393 308 QAEGLDL 314 (513)
Q Consensus 308 ~~e~~~l 314 (513)
..|-..+
T Consensus 156 F~Efl~~ 162 (398)
T COG1373 156 FREFLKL 162 (398)
T ss_pred HHHHHhh
Confidence 9888654
No 221
>PRK08118 topology modulation protein; Reviewed
Probab=97.74 E-value=3.3e-05 Score=67.77 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=28.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEE
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGI 209 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 209 (513)
+.|.|+|++|+||||||+.+++..... .+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999988654 45666665
No 222
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.74 E-value=0.00012 Score=68.45 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 16 l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 16 LDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444444556 8999999999999999999998754
No 223
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.74 E-value=0.0001 Score=67.75 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 16 LKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred ecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33344444455 89999999999999999999987653
No 224
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.74 E-value=8.2e-05 Score=68.46 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 17 il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 17 ALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred eecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444445566 8999999999999999999988764
No 225
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.74 E-value=0.0001 Score=69.12 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 17 l~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 17 LHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444555 8999999999999999999998764
No 226
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=7.5e-05 Score=71.47 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+.+....
T Consensus 21 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (274)
T PRK13647 21 LKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLP 57 (274)
T ss_pred eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44444444556 89999999999999999999987653
No 227
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=0.00014 Score=61.51 Aligned_cols=109 Identities=22% Similarity=0.130 Sum_probs=57.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
..+.|+|++|+||||+++.+++...... ..++++..+........... ...................+.. .....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALA--LARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHH--HHHhc
Confidence 6899999999999999999999887642 23444443333222111111 1111111111222222222222 22222
Q ss_pred CeEEEEEecCCCccccccc--------------ccCCCCcEEEEEeCc
Q 044393 255 RKILIILDDVWKELDLETV--------------GIPANCCKILLTTRL 288 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l--------------~~~~~~~~iivTtr~ 288 (513)
+..++++|++......... .....+..+|.|+..
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 3489999999876542221 111226777777774
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=3.5e-05 Score=73.54 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=27.6
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 42 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 42 DVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 333334455 89999999999999999999987653
No 229
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.73 E-value=0.00017 Score=66.55 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 20 l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 20 LKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 34444444556 89999999999999999999887653
No 230
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.72 E-value=8e-05 Score=70.65 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.+.+....
T Consensus 21 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 21 LKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444555 89999999999999999999987653
No 231
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=7.1e-05 Score=70.69 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 18 ~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 18 VLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 344555555566 8999999999999999999998754
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.72 E-value=0.00027 Score=66.89 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 19 l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 19 VHGVSLTLQRG--RVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444555 89999999999999999999987643
No 233
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.72 E-value=3.1e-05 Score=70.53 Aligned_cols=108 Identities=14% Similarity=0.211 Sum_probs=58.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh-hc-CCCCe----------EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR-QE-KIFDE----------VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERA 242 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~-~~-~~f~~----------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (513)
.+++|+|++|+|||||++.+....- .+ +.|.. ..+.......++.. ....-....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~-------------~~s~~~~e~ 96 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISD-------------GRSTFMAEL 96 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccC-------------CceeHHHHH
Confidence 7999999999999999999984332 11 11111 11111111111000 000111112
Q ss_pred HHHHHHHHhccCCeEEEEEecCCCcccccc---c----cc--CCCCcEEEEEeCchHHHhhcC
Q 044393 243 DRLRLMFSESKGRKILIILDDVWKELDLET---V----GI--PANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 243 ~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l----~~--~~~~~~iivTtr~~~v~~~~~ 296 (513)
..+...+.... .+-++++|++....+... + .. ...+..+|++||+.++.....
T Consensus 97 ~~l~~i~~~~~-~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 97 LELKEILSLAT-PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred HHHHHHHHhcc-CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 22333334444 889999999977655321 1 11 112788999999988766543
No 234
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.72 E-value=0.00015 Score=77.46 Aligned_cols=38 Identities=32% Similarity=0.417 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 358 il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 358 ALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred cccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 555555555666 89999999999999999999988765
No 235
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00011 Score=69.76 Aligned_cols=30 Identities=37% Similarity=0.759 Sum_probs=25.9
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.++ .+++|+|++|+|||||++.+++....
T Consensus 47 i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 47 AYEG--DVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3455 89999999999999999999998654
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.70 E-value=0.00011 Score=69.38 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++.
T Consensus 22 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKG--EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCC--cEEEEECCCCCCHHHHHHHHcCC
Confidence 444555555566 89999999999999999999985
No 237
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.70 E-value=0.00016 Score=67.78 Aligned_cols=35 Identities=34% Similarity=0.595 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 19 ~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 19 DNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred eceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3333334455 8999999999999999999998764
No 238
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00015 Score=69.99 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 22 l~~vsl~i~~G--e~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 22 LFDIDLEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred eeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 33444444556 89999999999999999999987654
No 239
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00013 Score=70.08 Aligned_cols=37 Identities=30% Similarity=0.508 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 23 l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 23 LNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCC
Confidence 33333334455 89999999999999999999987643
No 240
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.0002 Score=67.08 Aligned_cols=38 Identities=32% Similarity=0.537 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 17 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 17 ALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444556 89999999999999999999987643
No 241
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.69 E-value=0.00034 Score=63.79 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 20 il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 20 TLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred eeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 344444445566 89999999999999999999997654
No 242
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.69 E-value=7.2e-05 Score=69.32 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 37 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 37 ALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334444444455 89999999999999999999987653
No 243
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00012 Score=70.14 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 20 l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 20 LNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred eeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33344444455 89999999999999999999987653
No 244
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.68 E-value=0.00026 Score=65.52 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~ 32 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPP 32 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 89999999999999999999987653
No 245
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=0.00016 Score=67.88 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+......
T Consensus 19 l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 19 VEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999987643
No 246
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00016 Score=67.51 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 25 l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 25 LHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444444555 8999999999999999999998764
No 247
>PLN03073 ABC transporter F family; Provisional
Probab=97.67 E-value=4.8e-05 Score=82.13 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
|....++.+...+..+ ..++|+|++|+|||||++.++..
T Consensus 188 ~~~~ll~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 188 GGRDLIVDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CCCEEEECCEEEECCC--CEEEEECCCCCCHHHHHHHHcCC
Confidence 4333555555555666 89999999999999999999875
No 248
>PRK10908 cell division protein FtsE; Provisional
Probab=97.67 E-value=0.00014 Score=67.37 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 19 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 19 QGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3343344455 89999999999999999999887653
No 249
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.67 E-value=3.4e-05 Score=69.41 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+|....++.|...+..+ ++.++.|++|.||||..+.+.+-...
T Consensus 10 K~Fg~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred hccCceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCc
Confidence 3345556667777767777 89999999999999999999998775
No 250
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.67 E-value=8.4e-05 Score=67.26 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++++|+|++|+|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999998755
No 251
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00017 Score=69.52 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+..+ .+++|+|++|+|||||++.+++....
T Consensus 22 ~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 22 GLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred ceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444445566 89999999999999999999987654
No 252
>PLN03073 ABC transporter F family; Provisional
Probab=97.66 E-value=8.9e-05 Score=80.10 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CC-eEEEEEEcCCC----ChH-------------
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FD-EVGIATVSQDP----DII------------- 219 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~-~~~wv~~~~~~----~~~------------- 219 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....... +. .....++++.. +..
T Consensus 524 il~~vsl~i~~G--e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~ 601 (718)
T PLN03073 524 LFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG 601 (718)
T ss_pred eEeccEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCC
Confidence 445554444555 89999999999999999999987654210 11 01122333322 110
Q ss_pred ---HHHHHHHHHhCCCC-------CCCCHHHH-HHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCCCcEE
Q 044393 220 ---NVQSELVKWLGWEL-------KEKDEEER-ADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPANCCKI 282 (513)
Q Consensus 220 ---~~~~~i~~~l~~~~-------~~~~~~~~-~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~i 282 (513)
.....++..++... ...+..+. .-.+.. .+.. ++-+|+||++.+.+|..... ... ++.|
T Consensus 602 ~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAr--aL~~-~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~gtv 677 (718)
T PLN03073 602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK--ITFK-KPHILLLDEPSNHLDLDAVEALIQGLVLF-QGGV 677 (718)
T ss_pred CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CCEE
Confidence 01122333333321 01111111 111121 3333 67799999999998754321 111 3489
Q ss_pred EEEeCchHHHhhcCCcceeec
Q 044393 283 LLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 283 ivTtr~~~v~~~~~~~~~~~l 303 (513)
|++||+......+. ...+.+
T Consensus 678 IivSHd~~~i~~~~-drv~~l 697 (718)
T PLN03073 678 LMVSHDEHLISGSV-DELWVV 697 (718)
T ss_pred EEEECCHHHHHHhC-CEEEEE
Confidence 99999988776543 234444
No 253
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00018 Score=69.28 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 22 ~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 22 AIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444444556 89999999999999999999987654
No 254
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00025 Score=76.66 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=88.8
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C---CCeEEEEEEcCCCChHHHHHHHH
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I---FDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
...+.+||+.++..+...|......-+.++|++|+|||++|+.+++...... . .++.+|.. +. ..++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~----~~ll 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DI----GSLL 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cH----HHHh
Confidence 3456789999999999988776556677999999999999999998764321 1 13344421 11 1111
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc----------ccccccccC---CCCcEEEEEeCchHHHh
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE----------LDLETVGIP---ANCCKILLTTRLQQVCD 293 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~----------~~~~~l~~~---~~~~~iivTtr~~~v~~ 293 (513)
. +....+.........+ . .+...++.+|++|++... .+...+..+ .+..++|-+|..++...
T Consensus 255 a--G~~~~Ge~e~rl~~l~-~--~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 255 A--GTKYRGDFEKRFKALL-K--QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred c--ccchhhhHHHHHHHHH-H--HHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHH
Confidence 1 1111111111122222 2 222346779999998543 112111111 12456666665443211
Q ss_pred h-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393 294 R-------MGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 294 ~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
. ..-...+.+++++.+++..++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123579999999999999998643
No 255
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00019 Score=61.04 Aligned_cols=48 Identities=29% Similarity=0.478 Sum_probs=37.4
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+.++|-..-+.++...+-.+ .+++|+|.+|+|||||...+..++.+
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PG--eVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPG--EVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred hhhhhhCCCcCccccceeecCC--cEEEEEecCCCcHHhHHHHHhcccCC
Confidence 3444555555566777777777 89999999999999999999877654
No 256
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.66 E-value=0.00025 Score=66.94 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+. .+.++ .+++|+|++|+|||||++.++.....
T Consensus 16 ~l~~i~-~i~~G--e~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 16 KLHRLP-VPREG--QVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred hhhcCC-CCCCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 445554 34455 89999999999999999999988764
No 257
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00012 Score=70.25 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+.-.+..+ .+++|+|++|+|||||++.+++....
T Consensus 23 l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 23 LKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999987654
No 258
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.66 E-value=5.6e-05 Score=70.41 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 15 ~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 15 ILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred EecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344455455566 89999999999999999999987653
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.66 E-value=9.3e-05 Score=70.42 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 19 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 19 ALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence 444555555566 8999999999999999999998765
No 260
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.0002 Score=69.06 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 23 L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 23 LYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 33343344556 89999999999999999999987653
No 261
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.65 E-value=0.00022 Score=67.02 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 19 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 19 NDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred eeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333344455 8999999999999999999998754
No 262
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.65 E-value=0.00018 Score=66.47 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 21 l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 21 LKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444556 8999999999999999999988754
No 263
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.65 E-value=8.5e-05 Score=69.83 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 17 il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 444454445566 8999999999999999999987764
No 264
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.65 E-value=7.1e-05 Score=78.30 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 19 ~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 19 ALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred EeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 445555455566 89999999999999999999987643
No 265
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.0002 Score=71.51 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 20 ~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 20 KDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred eeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999987653
No 266
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.65 E-value=0.00026 Score=70.23 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
++.+...+..+ .+++|+|++|+|||||.+.++......
T Consensus 21 l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 21 LDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33333334455 799999999999999999999876543
No 267
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00021 Score=68.99 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 27 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 27 LNNTSLTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred eeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999887643
No 268
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.65 E-value=0.0052 Score=67.13 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+..| ..++|+|++|+|||||++.+.+...+
T Consensus 472 il~~i~l~i~~G--~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 472 VLSNLNLDIKPG--EFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred ccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 556655555666 89999999999999999999887754
No 269
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00033 Score=65.70 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 19 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 19 LKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444555 8999999999999999999998764
No 270
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.65 E-value=0.0003 Score=73.74 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 26 il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p 63 (510)
T PRK15439 26 VLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPP 63 (510)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 445555555566 89999999999999999999987643
No 271
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.65 E-value=0.00017 Score=60.57 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHhHhh
Q 044393 177 VGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 177 i~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999985
No 272
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00016 Score=69.47 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 24 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 24 NDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred eeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3333334455 89999999999999999999987653
No 273
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.64 E-value=0.00064 Score=62.13 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 23 ~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 23 VLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred cccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccC
Confidence 344444444555 8999999999999999999988654
No 274
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.64 E-value=0.00026 Score=67.12 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 22 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 22 CRDVSFDLYPG--EVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred eeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444556 89999999999999999999987643
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.64 E-value=9.8e-05 Score=77.07 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 18 il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 18 TLQLPSLTLNAG--DSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred ecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455555555666 89999999999999999999987643
No 276
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.64 E-value=0.00025 Score=65.93 Aligned_cols=37 Identities=38% Similarity=0.606 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 20 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 20 ALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred eecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444445566 8999999999999999999998764
No 277
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.64 E-value=9.6e-05 Score=66.55 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
|....++.+.-.+.++ .+++|+|++|+|||||.+.+....+..
T Consensus 19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 5556667777666777 899999999999999999998887653
No 278
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=0.00018 Score=65.97 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+.+|...+..+ .+++++|++|.||||+.+.+.....+
T Consensus 39 AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p 76 (325)
T COG4586 39 AVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLP 76 (325)
T ss_pred hhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCcccc
Confidence 344455555556 89999999999999999999877654
No 279
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00016 Score=68.70 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 28 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 28 ALKNINLDIAKN--QVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence 445555555566 8999999999999999999997753
No 280
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.002 Score=63.33 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCCC
Q 044393 158 TKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQDP 216 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~ 216 (513)
.+...+.|...+..++. +...++|+.|+||||+|..+.+..-... |.|. .++....
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~-- 87 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDG-- 87 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEecccc--
Confidence 67788888888887764 5669999999999999999988764321 1111 1111100
Q ss_pred ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch
Q 044393 217 DIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ 289 (513)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~ 289 (513)
.....++..+.+..+- .-..+.+-++|+|++..... +..+..|.+++.+|++|.+.
T Consensus 88 -----------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 88 -----------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred -----------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 0111222222222110 11224666899999865432 23333455577777777653
Q ss_pred -HHHhhcC-CcceeecCCCChHhHHHHHHHh
Q 044393 290 -QVCDRMG-CDTRIKLDALDQAEGLDLLREH 318 (513)
Q Consensus 290 -~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~ 318 (513)
.+...+. ....+++.+++.++..+.+.+.
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3333322 2368999999999998888753
No 281
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=7.1e-05 Score=68.06 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 16 il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 16 LLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444444556 89999999999999999999887653
No 282
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.63 E-value=0.00018 Score=67.34 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 17 LDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 33344444556 89999999999999999999987643
No 283
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.00061 Score=63.07 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeE
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEV 207 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~ 207 (513)
...+..++......+..++.+. ..+.++|++|+|||+||..+..+.-..+.|..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 3444556777778888888776 699999999999999999988854322334443
No 284
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00026 Score=69.99 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 22 ~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 22 NNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred EeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999887653
No 285
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00013 Score=68.27 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 20 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 20 ALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344444445566 8999999999999999999988764
No 286
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.63 E-value=0.00016 Score=66.89 Aligned_cols=38 Identities=37% Similarity=0.605 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 17 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 17 AVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445556 89999999999999999999987653
No 287
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00051 Score=64.23 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 18 ~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 18 KDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3333334455 89999999999999999999987653
No 288
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.62 E-value=0.00044 Score=63.96 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 19 ~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 19 VLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred cccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 444555555566 8999999999999999999988754
No 289
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.62 E-value=0.00035 Score=65.06 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=24.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999988654
No 290
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.62 E-value=0.00024 Score=64.89 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 15 ~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 15 DDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred eceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3333334455 89999999999999999999987653
No 291
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00014 Score=68.81 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 20 ~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 20 AVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred EEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 344444445566 89999999999999999999987653
No 292
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.62 E-value=0.00032 Score=64.49 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=25.4
Q ss_pred hcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+ .+++|+|++|+|||||++.++.....
T Consensus 22 ~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 22 ADG--EIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred eCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345 89999999999999999999987654
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.61 E-value=0.00012 Score=78.15 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 33566666666667 89999999999999999999887764
No 294
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.61 E-value=0.00018 Score=69.79 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=27.1
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+...+.++ .+++|+|++|+|||||++.+.+....
T Consensus 21 is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 21 VSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred eEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33334455 89999999999999999999987653
No 295
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.61 E-value=0.00011 Score=69.97 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 28 ~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 28 AVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred eeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 445555555566 89999999999999999999988754
No 296
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00043 Score=64.67 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 19 ~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 19 RDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccC
Confidence 3333334455 89999999999999999999887653
No 297
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00037 Score=65.47 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 18 ~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 18 NNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred eeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3333334455 89999999999999999999987643
No 298
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=0.00049 Score=64.79 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 18 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 18 LFDINMQIEQN--KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 34444444455 899999999999999999999864
No 299
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.61 E-value=5.5e-05 Score=73.40 Aligned_cols=43 Identities=33% Similarity=0.445 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+|....++.+.-.+.++ .++++.||+|+|||||.+.++.-..+
T Consensus 15 yg~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 15 FGDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred cCCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444555566556666 89999999999999999999887655
No 300
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.61 E-value=0.0002 Score=67.66 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 17 ~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 17 DGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3344444556 89999999999999999999987643
No 301
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.60 E-value=0.0039 Score=59.15 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
+..++.+...+..+ ..|.+.|++|+|||+||+.++..... ....++.....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 45667777777777 67889999999999999999875421 23345555544444443
No 302
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.60 E-value=0.00052 Score=63.72 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 29 ~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 29 VLQDVSFTLHPG--EVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 444444444556 89999999999999999999987643
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.60 E-value=0.00011 Score=77.83 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 20 il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~p 57 (552)
T TIGR03719 20 ILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKE 57 (552)
T ss_pred eecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 445555555566 89999999999999999999987654
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.60 E-value=0.0001 Score=75.02 Aligned_cols=39 Identities=33% Similarity=0.592 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|.+|+|||||++.+.+-..+
T Consensus 305 ~Av~~VSf~l~~G--E~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 305 KAVDDVSFDLREG--ETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred eeeeeeeeEecCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3455555556666 89999999999999999999988765
No 305
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.60 E-value=0.00034 Score=68.85 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++...+.
T Consensus 21 L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 21 LNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444445556 89999999999999999999887654
No 306
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00015 Score=68.58 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 22 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 22 ALNNINIKILKN--SITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eecceeeEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence 455555555666 8999999999999999999998654
No 307
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00011 Score=70.26 Aligned_cols=37 Identities=38% Similarity=0.604 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 18 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (274)
T PRK13644 18 LENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred eeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999987653
No 308
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.59 E-value=0.00058 Score=63.96 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 20 ~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 20 KGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred eceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 3333334455 89999999999999999999987643
No 309
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.00043 Score=63.49 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=25.6
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.++ .+++|+|++|+|||||++.+++....
T Consensus 21 i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 21 FAQG--EITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445 89999999999999999999987653
No 310
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00022 Score=68.62 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 23 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 23 LFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred eeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33343334455 8999999999999999999988754
No 311
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.00045 Score=72.78 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=43.0
Q ss_pred CccccccccchhHHHHHHHHHHhcC-----CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 148 IPRFFSSFETTKSACNQITEALKKG-----STKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.|.....+++.++.++.+..++... ..+++.|+|++|+||||+++.+++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4566677888999999998888643 2357999999999999999999987653
No 312
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.0002 Score=65.70 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+++|+|++|+|||||++.+++...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998654
No 313
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00035 Score=65.58 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 17 LKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34444444556 8999999999999999999988764
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.58 E-value=0.00014 Score=77.43 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+....
T Consensus 350 ~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 350 GVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred cccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCC
Confidence 455555555566 89999999999999999999877654
No 315
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.58 E-value=0.00022 Score=66.78 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 17 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 17 DDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred eeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3333334455 8999999999999999999998754
No 316
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.58 E-value=0.00031 Score=76.70 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.+| ..++|+|++|+|||||++.+.+....
T Consensus 495 ~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 495 PVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred ccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 3556666656667 89999999999999999999888765
No 317
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.57 E-value=0.00023 Score=67.92 Aligned_cols=36 Identities=33% Similarity=0.703 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 24 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (269)
T PRK11831 24 DNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAP 59 (269)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999987643
No 318
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00037 Score=71.30 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 40 L~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P 76 (549)
T PRK13545 40 LNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMP 76 (549)
T ss_pred EeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 33444444555 89999999999999999999988754
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.56 E-value=0.00015 Score=76.76 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 338 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p 376 (556)
T PRK11819 338 LLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3556665555666 89999999999999999999987653
No 320
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00036 Score=68.63 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.+...
T Consensus 22 ~l~~vsl~i~~G--e~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 22 AVDRVSMTLTEG--EIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHccCC
Confidence 344444445566 8999999999999999999998764
No 321
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.56 E-value=0.00053 Score=63.34 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+.....
T Consensus 19 ~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 19 ALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 344444444556 8999999999999999999998764
No 322
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00024 Score=67.86 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 25 l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 25 LKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444444555 89999999999999999999987653
No 323
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00016 Score=68.46 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 19 ~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 19 VIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 445555555566 8999999999999999999998754
No 324
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.55 E-value=0.00041 Score=73.80 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 354 ~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p 392 (574)
T PRK11160 354 PVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDP 392 (574)
T ss_pred cceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3566666666667 89999999999999999999987754
No 325
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00033 Score=68.46 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 41 ~L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 41 ALNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455555555566 89999999999999999999987653
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.55 E-value=9.5e-05 Score=78.26 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 336 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p 374 (552)
T TIGR03719 336 LLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQP 374 (552)
T ss_pred eeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3555555555566 89999999999999999999987653
No 327
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.55 E-value=0.00014 Score=66.15 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 16 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 16 FSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred eccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444556 8999999999999999999988764
No 328
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00017 Score=66.41 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.. .+++|+|++|+|||||++.+.+...
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 8999999999999999999988765
No 329
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.54 E-value=0.0017 Score=56.65 Aligned_cols=132 Identities=21% Similarity=0.276 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC------------------CeEEEEEEcCC--
Q 044393 157 TTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF------------------DEVGIATVSQD-- 215 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f------------------~~~~wv~~~~~-- 215 (513)
|.+...+.|...+.++.. +.+.++|+.|+||+|+|..+++..-..... ....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456778888888888764 568999999999999999998876433211 12233322211
Q ss_pred -CChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCc
Q 044393 216 -PDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRL 288 (513)
Q Consensus 216 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~ 288 (513)
... +..+++...+... -..++.-++|+|++..... +..+..|..++.+|++|++
T Consensus 81 ~i~i-~~ir~i~~~~~~~------------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKI-DQIREIIEFLSLS------------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSH-HHHHHHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhH-HHHHHHHHHHHHH------------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 111 2222333332221 1124677999999976532 3334455568888888887
Q ss_pred hH-HHhhc-CCcceeecCCCC
Q 044393 289 QQ-VCDRM-GCDTRIKLDALD 307 (513)
Q Consensus 289 ~~-v~~~~-~~~~~~~l~~L~ 307 (513)
.. +...+ +-...+.+.++|
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 54 33332 222456666653
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=0.00031 Score=63.54 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 79999999999999999999987653
No 331
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00032 Score=67.01 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 25 l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 25 LKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444444555 89999999999999999999987653
No 332
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00056 Score=65.26 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 28 il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 28 AVKNVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEcceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence 445554445566 8999999999999999999988643
No 333
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.54 E-value=6.9e-05 Score=74.14 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=25.9
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.+++....
T Consensus 16 i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 16 IAKG--EIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred EcCC--CEEEEECCCCChHHHHHHHHhCCCCC
Confidence 4455 89999999999999999999987754
No 334
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00083 Score=68.56 Aligned_cols=188 Identities=19% Similarity=0.220 Sum_probs=110.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
|..+..++|.+.....|...+..+. .+--...|+-|+||||+|+.++..+--... ........-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 4566777899999999999998874 345678999999999999999887643211 00111111112222222
Q ss_pred HhCCC------CCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCc--cc----ccccccCCCCcEEEEEeCch-HHHh
Q 044393 228 WLGWE------LKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKE--LD----LETVGIPANCCKILLTTRLQ-QVCD 293 (513)
Q Consensus 228 ~l~~~------~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~--~~----~~~l~~~~~~~~iivTtr~~-~v~~ 293 (513)
.-... ......++......+.... ..++.-+.|+|++.-. .. +..+..|..+...|+.|.+. .+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 10000 0111233333333332222 2345569999998543 22 33344455566666666553 3333
Q ss_pred h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
. ++....+.++.++.++-...+...+..+.-..+ ++...-|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 2 233378999999999999998888865443333 5666777777777443
No 335
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00031 Score=67.32 Aligned_cols=36 Identities=36% Similarity=0.478 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 19 ~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 19 KGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999887643
No 336
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.53 E-value=0.00057 Score=67.69 Aligned_cols=30 Identities=40% Similarity=0.614 Sum_probs=25.7
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.++.....
T Consensus 25 i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 25 IPSG--QMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3455 89999999999999999999987654
No 337
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00017 Score=75.70 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 20 il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 20 ALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcC
Confidence 445555555566 8999999999999999999988764
No 338
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00011 Score=69.63 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
|....+..+...+..+ .+++|+|++|+|||||++.+.....
T Consensus 21 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 21 NDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred CCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333445555555566 8999999999999999999997754
No 339
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.016 Score=57.38 Aligned_cols=164 Identities=15% Similarity=0.196 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhcCC---------ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHh
Q 044393 159 KSACNQITEALKKGS---------TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWL 229 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~---------~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (513)
+..+++|...+...+ -+--.++||+|.||||++.++++.+. |+..- ..++...+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~------------ 273 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKL------------ 273 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccC------------
Confidence 456666766665432 24467999999999999999999987 43211 11111111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc---------------------------cccccCCCCcEE
Q 044393 230 GWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL---------------------------ETVGIPANCCKI 282 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~---------------------------~~l~~~~~~~~i 282 (513)
..+ |+.++.... .+.+||+.|++...++ +.+...+++-||
T Consensus 274 --------n~d----Lr~LL~~t~-~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI 340 (457)
T KOG0743|consen 274 --------DSD----LRHLLLATP-NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI 340 (457)
T ss_pred --------cHH----HHHHHHhCC-CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence 111 222222233 6667777777543221 111122223354
Q ss_pred -EEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh-cC
Q 044393 283 -LLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL-TG 355 (513)
Q Consensus 283 -ivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l-~~ 355 (513)
|+||...+ +.+.-.....+.+.--+.+....|++...+.+.. ..++.+|.+...|.-+.=..++..| .+
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 45666432 2221123467889999999999999999875431 3456666666677766666666655 44
Q ss_pred C
Q 044393 356 R 356 (513)
Q Consensus 356 ~ 356 (513)
+
T Consensus 417 ~ 417 (457)
T KOG0743|consen 417 K 417 (457)
T ss_pred c
Confidence 4
No 340
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00025 Score=68.00 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 23 l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (277)
T PRK13642 23 LNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 33444444556 89999999999999999999877653
No 341
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00019 Score=71.17 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 21 ~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 21 KGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred eeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 3344444455 89999999999999999999987654
No 342
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.53 E-value=0.00037 Score=69.01 Aligned_cols=30 Identities=47% Similarity=0.675 Sum_probs=25.8
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||.+.++.....
T Consensus 27 i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 27 VKKG--EFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 3445 89999999999999999999987654
No 343
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.52 E-value=0.00014 Score=68.67 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=62.9
Q ss_pred hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCC--------CCCCCCHHHH
Q 044393 170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW--------ELKEKDEEER 241 (513)
Q Consensus 170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--------~~~~~~~~~~ 241 (513)
..++..-++|+|++|+|||||++.++...... ...+++. .+.....+...++...... ..+..+....
T Consensus 107 ~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~-g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 107 RNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLR-GKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred hCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEEC-CEEeecchhHHHHHHHhcccccccccccccccccchH
Confidence 34445689999999999999999999887653 1122211 0000000111222222111 0000111111
Q ss_pred HHHHHHHHHhccCCeEEEEEecCCCcccccccccC-CCCcEEEEEeCchHHHh
Q 044393 242 ADRLRLMFSESKGRKILIILDDVWKELDLETVGIP-ANCCKILLTTRLQQVCD 293 (513)
Q Consensus 242 ~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~-~~~~~iivTtr~~~v~~ 293 (513)
...+.. ....-.+-++++|++.....+..+... ..|..||+|||+..+..
T Consensus 183 ~~~~~~--~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMM--LIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHH--HHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHH
Confidence 112222 222237789999999877655544322 23889999999876643
No 344
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.52 E-value=0.00052 Score=64.93 Aligned_cols=37 Identities=30% Similarity=0.585 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 19 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 19 CRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred eecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444445566 89999999999999999999887643
No 345
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.52 E-value=0.00045 Score=69.35 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||.+.+......
T Consensus 19 L~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p 55 (402)
T PRK09536 19 LDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTP 55 (402)
T ss_pred EEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999987643
No 346
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00018 Score=75.43 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 19 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 19 KALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455555555666 8999999999999999999998765
No 347
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00041 Score=68.85 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999987653
No 348
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00044 Score=69.37 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+....
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 89999999999999999999987654
No 349
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00027 Score=69.82 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 22 l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 22 IDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 34444444555 89999999999999999999987754
No 350
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00023 Score=67.53 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 17 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 17 LLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445556 89999999999999999999987643
No 351
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.001 Score=65.79 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=87.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
...+.|+|+.|.|||.|++.+++..... ......++++. ......++..+.. ...+..++ ..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~s----e~f~~~~v~a~~~--------~~~~~Fk~--~y-- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTS----EDFTNDFVKALRD--------NEMEKFKE--KY-- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccH----HHHHHHHHHHHHh--------hhHHHHHH--hh--
Confidence 5799999999999999999999998765 33223333332 2333333333221 11112222 11
Q ss_pred CCeEEEEEecCCCccc---cc-ccccC-----CCCcEEEEEeCc---------hHHHhhcCCcceeecCCCChHhHHHHH
Q 044393 254 GRKILIILDDVWKELD---LE-TVGIP-----ANCCKILLTTRL---------QQVCDRMGCDTRIKLDALDQAEGLDLL 315 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~---~~-~l~~~-----~~~~~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf 315 (513)
.-=++++||++.... ++ .+... ..|..||+|++. +.+...+...-.+.+.+.+.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 223899999865322 11 11111 126689999975 234455566678999999999999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHhCC
Q 044393 316 REHAGIDVADTTLTDVSKRVADECKG 341 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~~~~G 341 (513)
.+++......- .+++..-|++....
T Consensus 254 ~kka~~~~~~i-~~ev~~~la~~~~~ 278 (408)
T COG0593 254 RKKAEDRGIEI-PDEVLEFLAKRLDR 278 (408)
T ss_pred HHHHHhcCCCC-CHHHHHHHHHHhhc
Confidence 98775332211 13445555554443
No 352
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00063 Score=61.89 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+.++ .+++|+|++|+|||||++.+.....
T Consensus 24 ~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 24 KDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence 3333334455 8999999999999999999998865
No 353
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.50 E-value=0.0005 Score=68.53 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.++.....
T Consensus 30 l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 30 ISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred EeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 33343344455 89999999999999999999987654
No 354
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.50 E-value=0.0003 Score=74.29 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3566666556666 89999999999999999999887764
No 355
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00044 Score=66.60 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 23 l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 23 LDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34444444556 89999999999999999999987653
No 356
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0004 Score=64.74 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=25.3
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.++.....
T Consensus 22 i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 22 VERG--ERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445 89999999999999999999887543
No 357
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00019 Score=67.89 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++..
T Consensus 21 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 21 ALHDISLEFEQN--QVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eecceeEEEeCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 445555555566 899999999999999999999753
No 358
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00081 Score=64.13 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 35 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 35 LFDVDLDIPEK--TVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33343344556 8999999999999999999998653
No 359
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00076 Score=64.94 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.++.+...+..+ .+++|+|++|+|||||++.++..
T Consensus 54 il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 54 AVKKVNADILSK--YVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcc
Confidence 344444444556 89999999999999999999985
No 360
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.49 E-value=0.00044 Score=75.69 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+..| ..++|+|++|+|||||++.+.+...+
T Consensus 488 ~iL~~isl~i~~G--~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 488 NILSDISLTIKMN--SKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred cceeceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3455555555666 89999999999999999999887654
No 361
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00031 Score=70.12 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.++.-...
T Consensus 36 ~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 36 DDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred eeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3333334455 89999999999999999999987654
No 362
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.49 E-value=0.00026 Score=77.29 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.+| ..++|+|++|+|||||++.+.+...+
T Consensus 479 ~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 479 PALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred cceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3556666556667 89999999999999999999887654
No 363
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.49 E-value=0.00056 Score=71.67 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 279 l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~Gl~~ 314 (510)
T PRK15439 279 FRNISLEVRAG--EILGLAGVVGAGRTELAETLYGLRP 314 (510)
T ss_pred ccceeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444444455 8999999999999999999988754
No 364
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.48 E-value=0.00018 Score=71.51 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.....
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p 49 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRP 49 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 89999999999999999999987653
No 365
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.48 E-value=0.00042 Score=68.00 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 37 l~~vsl~i~~G--e~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 37 VDGVTLRLYEG--ETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred EeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 33444444555 89999999999999999999887643
No 366
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.48 E-value=9.6e-05 Score=67.05 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=60.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh--cCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC----CH-HHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ--EKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK----DE-EERADRLRL 247 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~-~~~~~~l~~ 247 (513)
+++.|.|++|.||||+++.++...-- -+.| +. .......+...+...++...... .- .+.. .+..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vp--a~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~-~~~~ 101 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VP--AEYATLPIFNRLLSRLSNDDSMERNLSTFASEMS-ETAY 101 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cc--hhhcCccChhheeEecCCccccchhhhHHHHHHH-HHHH
Confidence 89999999999999999988754321 1111 11 00111122233333332221100 00 1112 2333
Q ss_pred HHHhccCCeEEEEEecCCCccccc---c----cc--cCCCCcEEEEEeCchHHHhhcC
Q 044393 248 MFSESKGRKILIILDDVWKELDLE---T----VG--IPANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~~~~~~~~---~----l~--~~~~~~~iivTtr~~~v~~~~~ 296 (513)
.+.+.. ++-|+++|++....+.. . +. ....+..+|++||+.+++..+.
T Consensus 102 il~~~~-~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYAD-GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcC-CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 334444 77899999995543221 1 11 1112889999999988877654
No 367
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.48 E-value=0.00041 Score=60.47 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP 216 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 216 (513)
++.|+|++|+||||++..++...... -..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 36899999999999999999887652 3456666655443
No 368
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.48 E-value=0.00028 Score=73.90 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 274 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 274 KRVDDVSFSLRRG--EILGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred cccccceeEEeCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 3555665555666 8999999999999999999998764
No 369
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00027 Score=64.98 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=29.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV 212 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 212 (513)
-.++|+|+.|+|||||+..+....... |..+.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 478999999999999999998877654 776665543
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.48 E-value=0.00059 Score=61.68 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+++|+|++|+|||||++.++.-.
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 388999999999999999987543
No 371
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.0086 Score=54.89 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHHHH----HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC
Q 044393 151 FFSSFETTKSACNQITEA----LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK 202 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~ 202 (513)
.....+|-+...+.|... +......-+.++|..|+|||+|++.+.+....++
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 344556666665555543 3444456788999999999999999999887763
No 372
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.48 E-value=0.00018 Score=67.81 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+.....
T Consensus 16 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 16 ALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred eecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 344444445566 8999999999999999999987764
No 373
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00093 Score=63.63 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 26 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 26 LLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 455555555566 8999999999999999999998764
No 374
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.47 E-value=0.00024 Score=77.72 Aligned_cols=39 Identities=31% Similarity=0.459 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+..| ..++|+|++|+|||||++.+.+...+
T Consensus 493 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 493 PLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3566665555666 89999999999999999999887754
No 375
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.47 E-value=0.00085 Score=71.39 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 330 ~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p 367 (569)
T PRK10789 330 ALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred cccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 455555556666 89999999999999999999887654
No 376
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00024 Score=69.01 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCcccccccccCCC-----CcEEEEEeCchHHHhhcCCcceeecC
Q 044393 255 RKILIILDDVWKELDLETVGIPAN-----CCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l~~~~~-----~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
.+.||.||++.+++|+..+.-..+ ...++|+||+..+.+.+++ .+|+|.
T Consensus 430 EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCt-dIIHLD 483 (807)
T KOG0066|consen 430 EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCT-DIIHLD 483 (807)
T ss_pred CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHH-HHhhhh
Confidence 345999999999999988754333 5689999999877766533 445553
No 377
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00018 Score=71.56 Aligned_cols=122 Identities=23% Similarity=0.283 Sum_probs=66.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeE----EEEEEcC-CCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH--
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEV----GIATVSQ-DPDIINVQSELVKWLGWELKEKDEEERADRLRL-- 247 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~----~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~-- 247 (513)
..++++|++|.||||+.+.+..+..+...+..+ -..+..| ..+..+..-+-+..+....++...++....+..
T Consensus 391 sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~G 470 (582)
T KOG0062|consen 391 SRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFG 470 (582)
T ss_pred hhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999988743222111 0111111 111112211222222122222222222111111
Q ss_pred ---------HHHhccC-------------CeEEEEEecCCCcccccccccCCC-----CcEEEEEeCchHHHhhcC
Q 044393 248 ---------MFSESKG-------------RKILIILDDVWKELDLETVGIPAN-----CCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 248 ---------~~~l~~~-------------~~~LlVLDd~~~~~~~~~l~~~~~-----~~~iivTtr~~~v~~~~~ 296 (513)
+-.|.+| ++-|||||+++|++|.+.+..... ++-||++||+.++.....
T Consensus 471 l~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 471 LSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC 546 (582)
T ss_pred CCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcC
Confidence 0012222 556999999999999777643322 777888999988876653
No 378
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.46 E-value=0.00014 Score=66.05 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 17 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 17 EGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred eeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333344455 8999999999999999999998764
No 379
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.46 E-value=0.00014 Score=66.13 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVG 195 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~ 195 (513)
++++|+|++|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 380
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.45 E-value=0.00027 Score=74.75 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 338 ~l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~~ 375 (547)
T PRK10522 338 SVGPINLTIKRG--ELLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred EEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455555555666 89999999999999999999887653
No 381
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00025 Score=68.17 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 21 ~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 21 ALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444444455566 8999999999999999999998764
No 382
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00025 Score=74.06 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 13 il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 13 ALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred eeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344454445566 8999999999999999999988764
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=97.45 E-value=0.0004 Score=73.62 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..+. .+..+ .+++|+|++|+|||||++.+.+...+
T Consensus 89 ~L~~l~-~i~~G--ev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 89 KLYGLP-IPKEG--KVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred eEecCC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 455554 44555 89999999999999999999887653
No 384
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0003 Score=67.54 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 25 vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 25 ALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444556 89999999999999999999887653
No 385
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.45 E-value=0.0002 Score=75.35 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 15 ~l~~is~~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNISFTIEEG--EVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhcc
Confidence 445555555566 899999999999999999999874
No 386
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00011 Score=65.89 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+....++.+...+.++ ..|+|+|++|+|||||.+.+......
T Consensus 15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~ 56 (258)
T COG3638 15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDP 56 (258)
T ss_pred CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCC
Confidence 4444556666666667 89999999999999999999885544
No 387
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.44 E-value=0.00039 Score=74.44 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+.-.+.+| ..++|+|++|+|||||++.+.+..
T Consensus 365 vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 365 LAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence 455555445566 899999999999999999998877
No 388
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.0004 Score=72.88 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 278 ~l~~isl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 278 KVRDISFSVCRG--EILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred cccceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345554444555 8999999999999999999988654
No 389
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.44 E-value=0.00077 Score=70.55 Aligned_cols=36 Identities=36% Similarity=0.643 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 268 l~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 268 VNDVSFTLRKG--EILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred cccceEEEcCC--cEEEEecCCCCCHHHHHHHHhCCCC
Confidence 34444344455 8999999999999999999987754
No 390
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.44 E-value=0.001 Score=63.73 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 52 vL~~vs~~i~~G--e~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 52 VLKNINLKIEKG--EMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred ceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444555 89999999999999999999987654
No 391
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.44 E-value=0.0004 Score=65.82 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 16 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (256)
T TIGR03873 16 IVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRP 53 (256)
T ss_pred EEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 344444444556 89999999999999999999987653
No 392
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.43 E-value=0.00022 Score=74.70 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 16 il~~isl~i~~G--e~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 16 ALDGIDLEVRPG--ECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred eecceEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445555555566 8999999999999999999998764
No 393
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00021 Score=67.54 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 19 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 19 AVKNVNLDVQRG--TVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred eeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 445554445566 8999999999999999999998753
No 394
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00018 Score=63.54 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+..+ .+++|+||+|.|||||.+.+..+...
T Consensus 15 ~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p 53 (259)
T COG4559 15 RLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSP 53 (259)
T ss_pred eeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCC
Confidence 3455555555666 89999999999999999999998874
No 395
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00027 Score=67.30 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 22 ~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 22 VAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred EeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 455555555566 89999999999999999999987653
No 396
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.42 E-value=0.00075 Score=72.81 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 466 ~il~~isl~i~~G--e~~~IvG~nGsGKSTLl~lL~Gl~~~ 504 (659)
T TIGR00954 466 VLIESLSFEVPSG--NHLLICGPNGCGKSSLFRILGELWPV 504 (659)
T ss_pred eeeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3455555555566 89999999999999999999987654
No 397
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00036 Score=70.95 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc-----------------CCCCeEEEEEEcCCCCh----
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-----------------KIFDEVGIATVSQDPDI---- 218 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-----------------~~f~~~~wv~~~~~~~~---- 218 (513)
..+..+...+..+ +.++|+|++|+|||||+..+.+-.... ..+..+.|+ +|.+-+
T Consensus 335 ~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v--~Q~p~lf~gT 410 (559)
T COG4988 335 PALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV--SQNPYLFAGT 410 (559)
T ss_pred cccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee--CCCCcccccc
Confidence 4556666666677 899999999999999999998877631 112224454 333311
Q ss_pred -------------HHHHHHHHHHhCC-----C-----------CCCCCHHHHHH-HHHHHHHhccCCeEEEEEecCCCcc
Q 044393 219 -------------INVQSELVKWLGW-----E-----------LKEKDEEERAD-RLRLMFSESKGRKILIILDDVWKEL 268 (513)
Q Consensus 219 -------------~~~~~~i~~~l~~-----~-----------~~~~~~~~~~~-~l~~~~~l~~~~~~LlVLDd~~~~~ 268 (513)
.+-..+.+++.+. . ....+..+.+. .+.+ .+.. ++-++++|+++.+.
T Consensus 411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR--All~-~~~l~llDEpTA~L 487 (559)
T COG4988 411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR--ALLS-PASLLLLDEPTAHL 487 (559)
T ss_pred HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH--HhcC-CCCEEEecCCccCC
Confidence 1112222222211 0 00112222222 2222 4554 78899999999998
Q ss_pred ccccc-------ccCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393 269 DLETV-------GIPANCCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 269 ~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
|.+.- .....+..+|+.||....+..+. .++.++
T Consensus 488 D~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D--~I~vld 528 (559)
T COG4988 488 DAETEQIILQALQELAKQKTVLVITHRLEDAADAD--RIVVLD 528 (559)
T ss_pred CHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCC--EEEEec
Confidence 86542 12223788889999877666543 444443
No 398
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00077 Score=66.08 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.+...
T Consensus 22 ~l~~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 22 AVDRISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence 344455555566 8999999999999999999998764
No 399
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00092 Score=63.30 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 17 il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 17 ILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344444444555 8999999999999999999988654
No 400
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0011 Score=61.82 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.+++....
T Consensus 15 il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 15 ALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred eeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444445566 89999999999999999999988754
No 401
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.41 E-value=0.00093 Score=70.31 Aligned_cols=37 Identities=35% Similarity=0.671 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 299 il~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~~ 335 (520)
T TIGR03269 299 AVDNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred EEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445555555566 8999999999999999999988754
No 402
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00074 Score=64.06 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.....
T Consensus 27 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 27 ALKNVSMQIPKN--SVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344444444556 8999999999999999999997653
No 403
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0002 Score=62.37 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
+|.+..++.+.-.+.++ .+.+|+||+|.|||||...+.+-.+..
T Consensus 11 y~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~d 54 (252)
T COG4604 11 YGTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKKD 54 (252)
T ss_pred hCCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhcccc
Confidence 34444445554445555 899999999999999999998877654
No 404
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0009 Score=63.79 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 35 il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 35 AIKGIDMQFEKN--KITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred eEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhccC
Confidence 344444444555 8999999999999999999998763
No 405
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00092 Score=65.00 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 60 iL~~is~~i~~G--e~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 60 ALKGVSMDIPEK--SVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 344444444555 899999999999999999999875
No 406
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00041 Score=65.51 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+.++ .+++|+|++|+|||||++.+.+..
T Consensus 20 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 20 LNDINLPIYEN--KITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeceeEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence 34443334455 899999999999999999999864
No 407
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00035 Score=73.06 Aligned_cols=36 Identities=33% Similarity=0.594 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 269 l~~isl~i~~G--e~~~iiG~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 269 REPISFSVRAG--EIVGLFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred ccceeEEEeCC--cEEEEEcCCCCCHHHHHHHHcCCCc
Confidence 34444444455 8999999999999999999987754
No 408
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00023 Score=68.17 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 35 ~l~~vs~~i~~G--e~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 35 ALVDVHLKIPAK--KIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 455555555666 899999999999999999999654
No 409
>PRK07261 topology modulation protein; Provisional
Probab=97.40 E-value=0.00058 Score=60.25 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEE
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGI 209 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 209 (513)
.|.|+|++|+||||||+.+....... -+.+...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775432 23344444
No 410
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0004 Score=72.77 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 277 vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 277 RVDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred cccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 455555555566 8999999999999999999998754
No 411
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.39 E-value=0.00012 Score=79.62 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=90.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh--hhcCCCC-----------eEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL--RQEKIFD-----------EVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE 240 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~~f~-----------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (513)
.+++.|+||++.||||+++.+.-.. ...+.|- ..++..++...++...+.++.. .
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~------------~ 394 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSG------------H 394 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHH------------H
Confidence 4789999999999999999886442 1111110 1122223322222211111111 1
Q ss_pred HHHHHHHHHHhccCCeEEEEEecCCCcccccc---c----c--cCCCCcEEEEEeCchHHHhhcCCccee---ecCCCCh
Q 044393 241 RADRLRLMFSESKGRKILIILDDVWKELDLET---V----G--IPANCCKILLTTRLQQVCDRMGCDTRI---KLDALDQ 308 (513)
Q Consensus 241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l----~--~~~~~~~iivTtr~~~v~~~~~~~~~~---~l~~L~~ 308 (513)
.. .+..++... ..+.|++||++....+... + . ....|+.+|+|||...+.........+ .+. ++.
T Consensus 395 m~-~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~ 471 (782)
T PRK00409 395 MT-NIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDE 471 (782)
T ss_pred HH-HHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec
Confidence 11 111111222 3778999999977655321 1 1 112288999999998776543322111 111 111
Q ss_pred HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhh
Q 044393 309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQN 370 (513)
Q Consensus 309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~ 370 (513)
+...-.++-..|. +. ...|-.|++++ |+|-.+..-|.-+..........++..|..
T Consensus 472 ~~l~~~Ykl~~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 472 ETLRPTYRLLIGI--PG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred CcCcEEEEEeeCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1100001111111 11 34577788777 888888888877765555566666666654
No 412
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.39 E-value=0.0049 Score=67.55 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
..-+.++|++|+|||+||+.+++..... | +.+... +++. ..-+.+...... +.. ....
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--------~l~~----~~vGese~~i~~-~f~--~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--------EILS----KWVGESEKAIRE-IFR--KARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH--------HHhh----cccCcHHHHHHH-HHH--HHHh
Confidence 3568999999999999999999987532 2 222211 1111 111122222222 222 2333
Q ss_pred CCeEEEEEecCCCccc--------------ccccc---c---CCCCcEEEEEeCchHHHhh--c---CCcceeecCCCCh
Q 044393 254 GRKILIILDDVWKELD--------------LETVG---I---PANCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQ 308 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~--------------~~~l~---~---~~~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~ 308 (513)
..+++|++|+++.... ...+. . ...+..||.||......+. + .....+.+...+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 4789999999853210 11111 1 1125567777766543321 1 2346788888999
Q ss_pred HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
++-.++|+.........+. .....+++.|.|.--
T Consensus 625 ~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~sg 658 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAED--VDLEELAEMTEGYTG 658 (733)
T ss_pred HHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCCH
Confidence 9999999876543221111 124667888887653
No 413
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.39 E-value=0.00084 Score=64.05 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 28 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 64 (268)
T PRK10419 28 LNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESP 64 (268)
T ss_pred EeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444445566 89999999999999999999887543
No 414
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.39 E-value=0.0049 Score=67.82 Aligned_cols=46 Identities=33% Similarity=0.359 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|.+...+.+..++. ....+++.++||+|+|||++|+.+++....
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577777777776552 113368999999999999999999998753
No 415
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.39 E-value=0.00097 Score=70.59 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+.++ ..++|+|++|+|||||++.+.+...+
T Consensus 332 ~~l~~~~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 332 PTLRGISFRLQAG--EALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred cccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3455555555666 89999999999999999999988754
No 416
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00024 Score=67.66 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 25 il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 25 AVKNVWLDIPKN--QITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EeecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhhh
Confidence 445555555566 899999999999999999999653
No 417
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.39 E-value=0.0021 Score=59.23 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.++....
T Consensus 17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 17 LSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 33443334455 8999999999999999999998764
No 418
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00032 Score=66.19 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 18 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 18 ALKSINLPIPAR--QVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeecceEEecCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344444445566 8999999999999999999988654
No 419
>PRK08116 hypothetical protein; Validated
Probab=97.38 E-value=0.00034 Score=66.45 Aligned_cols=98 Identities=23% Similarity=0.165 Sum_probs=55.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG 254 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~ 254 (513)
.-+.++|++|+|||.||..+++.+..+ ...+++++ ..+++..+...+.... .....+ .+ . .+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-~~~~~~---~~-~--~l~-- 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-KEDENE---II-R--SLV-- 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-cccHHH---HH-H--Hhc--
Confidence 468999999999999999999998754 23445554 3344555544433211 111111 11 1 222
Q ss_pred CeEEEEEecCCC--cccccc-----ccc--CCCCcEEEEEeCch
Q 044393 255 RKILIILDDVWK--ELDLET-----VGI--PANCCKILLTTRLQ 289 (513)
Q Consensus 255 ~~~LlVLDd~~~--~~~~~~-----l~~--~~~~~~iivTtr~~ 289 (513)
.-=||||||+.. ..+|.. +.. ...+..+|+||...
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 223899999943 222221 111 11266788888753
No 420
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.38 E-value=0.0022 Score=60.75 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 37 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 37 LKHVKAYIKPG--QKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred eeEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccC
Confidence 33333334455 8999999999999999999988754
No 421
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00057 Score=66.98 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+.+...
T Consensus 31 l~~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 31 LDGVSFTLERG--KTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred EeeeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCCC
Confidence 44444445556 8999999999999999999988764
No 422
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00086 Score=70.02 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...+
T Consensus 263 ~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 299 (491)
T PRK10982 263 SIRDVSFDLHKG--EILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred ccceeeEEEeCC--cEEEEecCCCCCHHHHHHHHcCCCc
Confidence 344444444555 8999999999999999999987654
No 423
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.38 E-value=0.0011 Score=59.70 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-CChHHHHHHHHHHhCCCCC----CCCHHHHH-HHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-PDIINVQSELVKWLGWELK----EKDEEERA-DRLRL 247 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~-~~l~~ 247 (513)
+++|.++|+.|+||||.+.+++.....+ -..+..++.... ....+.++..++.++.+.. ..++.... ..+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999999999998888765 344556665433 2455677888888887632 12233322 22332
Q ss_pred HHHhccCCeEEEEEecC
Q 044393 248 MFSESKGRKILIILDDV 264 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~ 264 (513)
....+.=++++|-+
T Consensus 79 ---~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 ---FRKKGYDLVLIDTA 92 (196)
T ss_dssp ---HHHTTSSEEEEEE-
T ss_pred ---HhhcCCCEEEEecC
Confidence 22223348888876
No 424
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00065 Score=68.31 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=35.3
Q ss_pred cccchhH-HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 154 SFETTKS-ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 154 ~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
-.+|.++ .++.+...+..| ..|+|+|.+|+||||+.+.+..-..
T Consensus 359 f~y~~k~~iL~gvsf~I~kG--ekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKG--EKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred EEeCCCCceecceeEEecCC--CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555 777777777777 8999999999999999999987655
No 425
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.0013 Score=56.18 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=68.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CC--CeEEEEEEc-----C--------------
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IF--DEVGIATVS-----Q-------------- 214 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f--~~~~wv~~~-----~-------------- 214 (513)
..|+|+|++|+|||||...++.-..... .| ..+-+|.-| .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 7899999999999999998876443210 11 111222111 0
Q ss_pred ---CCChHHHHHHHHHHhCCCCC------C-CCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCC
Q 044393 215 ---DPDIINVQSELVKWLGWELK------E-KDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPAN 278 (513)
Q Consensus 215 ---~~~~~~~~~~i~~~l~~~~~------~-~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~ 278 (513)
..+.....+..+.+++.... + ..-++..-.+.. .+. ..+-+|+-|+++-.+| +..+.+..+
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR--Afa-~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln 193 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR--AFA-GRPDVLFADEPTGNLDRATGDKIADLLFALN 193 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH--Hhc-CCCCEEeccCCCCCcchhHHHHHHHHHHHHh
Confidence 12333444555666554311 1 111222223332 343 4888999999977654 333333333
Q ss_pred ---CcEEEEEeCchHHHhhcC
Q 044393 279 ---CCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 279 ---~~~iivTtr~~~v~~~~~ 296 (513)
|...+++||++.++..+.
T Consensus 194 re~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 194 RERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred hhcCceEEEEeCCHHHHHhhh
Confidence 999999999999987653
No 426
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.37 E-value=0.00053 Score=74.77 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.+| ..++|+|++|+|||||++.+.+-..+
T Consensus 467 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 467 LILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3556665556667 89999999999999999999887765
No 427
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00067 Score=59.13 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..+++.|++|+|||||.+.++.-...
T Consensus 20 ~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 20 ALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred hhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 455555555666 89999999999999999999887654
No 428
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.0018 Score=61.40 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 29 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 29 KNINLSIPEN--EVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3333334455 8999999999999999999987653
No 429
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.36 E-value=0.00078 Score=66.14 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+.+....
T Consensus 31 ~l~~vsl~i~~G--e~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 31 AVNDLNFSLRAG--ETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEeeeEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 344444445566 89999999999999999999987643
No 430
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.36 E-value=0.00092 Score=63.76 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 20 l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 20 LENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred eeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC
Confidence 44444445566 8999999999999999999988764
No 431
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00064 Score=63.49 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=25.9
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..+ .+++|+|++|+|||||++.++.....
T Consensus 21 ~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p 51 (235)
T cd03299 21 EVERG--DYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred EEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 33455 89999999999999999999887554
No 432
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.36 E-value=0.00067 Score=71.51 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 24 ~l~~isl~i~~G--e~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 24 VVNDVSLQIEAG--ETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred eeeceEEEEeCC--CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 455555555666 8999999999999999999998765
No 433
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0026 Score=66.39 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..| .++++|||+|.||||+|..+-+-..+
T Consensus 483 Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 483 VLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred hhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 778888888888 89999999999999999998776654
No 434
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.36 E-value=0.00012 Score=65.60 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred CeEEEEEecCCCccccc-------ccc--cCC-CCcEEEEEeCchHHHhhc
Q 044393 255 RKILIILDDVWKELDLE-------TVG--IPA-NCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~-------~l~--~~~-~~~~iivTtr~~~v~~~~ 295 (513)
++-|+++|++....+.. .+. ... .++.+|++||..++....
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 78899999997765432 111 112 378899999998765543
No 435
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00032 Score=67.22 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
...++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 34 ~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 34 KTVLDQVSMGFPAR--AVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EEEeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence 33455555555666 8999999999999999999998754
No 436
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.0013 Score=62.20 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++.
T Consensus 21 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 21 ALYDITISIPKN--RVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeeeEEEECCC--cEEEEECCCCCCHHHHHHHHhcc
Confidence 344444444555 89999999999999999999864
No 437
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.35 E-value=0.00058 Score=63.40 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+.+...
T Consensus 23 l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 23 LNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence 34443344555 8999999999999999999998765
No 438
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00097 Score=63.15 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|.+|+||||+++.+..-+.
T Consensus 20 av~~vs~~i~~G--E~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 20 AVDGVSFELKKG--EILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEeceeEEEcCC--cEEEEEcCCCCCHHHHHHHHHhccC
Confidence 344455555566 8999999999999999999998775
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.35 E-value=0.00062 Score=60.38 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=26.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT 211 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 211 (513)
.-+.++|+.|+|||.||..+.+..-.. .+ .+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee
Confidence 679999999999999999999887653 22 345554
No 440
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00036 Score=66.64 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..++.+...+..+ .+++|+|++|+|||||++.+++..
T Consensus 35 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 35 RAVNDISMDIEKH--AVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eeeeceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455555555566 899999999999999999998753
No 441
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.0012 Score=70.80 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 31 ~l~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 31 AVRNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence 455555555666 8999999999999999999998764
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.34 E-value=0.00031 Score=63.67 Aligned_cols=110 Identities=10% Similarity=0.093 Sum_probs=59.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII-NVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
..|.|+|++|+||||++..+.+..... ....++. +..+.... .....+..+-.. +.........++. .+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~--aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKA--ALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHH--HhcC
Confidence 478999999999999999888776533 2222222 22211100 000011111000 1111223344444 4444
Q ss_pred CCeEEEEEecCCCcccccccc-cCCCCcEEEEEeCchHHHh
Q 044393 254 GRKILIILDDVWKELDLETVG-IPANCCKILLTTRLQQVCD 293 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~~~~l~-~~~~~~~iivTtr~~~v~~ 293 (513)
.+-++++|++.+........ ....|..++.|+|..+...
T Consensus 74 -~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 74 -DPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred -CcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH
Confidence 56699999998766544432 2223777999999776543
No 443
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0013 Score=62.12 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 19 ~l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 19 ALHGISLDFEEK--ELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccc
Confidence 334444444555 8999999999999999999998753
No 444
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00036 Score=66.27 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.++ .+++|+|++|+|||||++.++.....
T Consensus 22 il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 22 ILEGVSMEIYQS--KVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCC
Confidence 344454445566 89999999999999999999987653
No 445
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.0014 Score=62.65 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 39 il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 39 ALKNINLDIHEN--EVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344444444555 8999999999999999999998754
No 446
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.33 E-value=0.00035 Score=73.61 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 301 il~~isl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 301 VVKNISFTLRPG--ETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhCcC
Confidence 456666666666 899999999999999999999865
No 447
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.33 E-value=0.00063 Score=59.46 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=55.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC-----------CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK-----------IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD 243 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 243 (513)
+++.|+|++|.||||+++.+.-..-... .+....+.. . + +....+.+ ....++.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~--~--------i~~~~~lS---~G~~~~~- 86 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA-E--L--------IFTRLQLS---GGEKELS- 86 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE-E--E--------ehheeecc---ccHHHHH-
Confidence 6999999999999999998754443221 111111110 0 0 11001111 1112222
Q ss_pred HHHHHHHh-ccCCeEEEEEecCCCccccccc-------ccC-CCCcEEEEEeCchHHHhh
Q 044393 244 RLRLMFSE-SKGRKILIILDDVWKELDLETV-------GIP-ANCCKILLTTRLQQVCDR 294 (513)
Q Consensus 244 ~l~~~~~l-~~~~~~LlVLDd~~~~~~~~~l-------~~~-~~~~~iivTtr~~~v~~~ 294 (513)
.+...+.. .-+++-++++|++....+...- ... ..++.+|+|||+......
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 22221111 1136789999999877653321 110 116899999999887654
No 448
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00069 Score=63.46 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+.-.+..+ .+.+|+|.+|.|||||.+.+..-.++
T Consensus 23 ~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~P 58 (339)
T COG1135 23 DDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERP 58 (339)
T ss_pred ccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCC
Confidence 3333334455 89999999999999999998765554
No 449
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.0013 Score=62.15 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 20 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 20 VKDVSMDFPEN--SVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence 34444444555 899999999999999999999875
No 450
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.33 E-value=0.0011 Score=70.81 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+....
T Consensus 347 il~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 347 ALDSISLVIEPG--ETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred cccCeeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 455555555566 89999999999999999999887754
No 451
>PLN03211 ABC transporter G-25; Provisional
Probab=97.32 E-value=0.0008 Score=72.29 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 82 ~iL~~vs~~i~~G--e~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 82 TILNGVTGMASPG--EILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred eeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444445556 8999999999999999999998764
No 452
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.0011 Score=69.44 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 19 il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 55 (501)
T PRK11288 19 ALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred EEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444445556 8999999999999999999988754
No 453
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.31 E-value=0.001 Score=63.37 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 26 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 26 VLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred EeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344455555566 89999999999999999999887643
No 454
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.31 E-value=0.00028 Score=71.91 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ .+++|+|.+|+||||++..+.+-...
T Consensus 23 ~~v~~vsf~v~~G--E~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 23 PAVRDVSFEVEPG--EILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eeeecceEEecCC--cEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 3455666666677 89999999999999999999887654
No 455
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.31 E-value=0.0008 Score=57.17 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..+...+..| ..++|+||+|+|||||.+.++.-...
T Consensus 18 il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 18 ILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 334444445556 79999999999999999999887654
No 456
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.00024 Score=68.31 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++.+...+..+ .+++|+|++|+|||||++.+.....
T Consensus 53 ~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 53 QALDDVSMDIPEN--QVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455555555566 8999999999999999999987653
No 457
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0015 Score=61.78 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+...+..+ .+++|+|++|+|||||++.+......
T Consensus 20 l~~~s~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 20 LKNINMDFPER--QITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCc
Confidence 34444444556 89999999999999999999887653
No 458
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.30 E-value=0.00039 Score=63.87 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH-hhhc-CCCC----------eEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ-LRQE-KIFD----------EVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERA 242 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~-~~~~-~~f~----------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (513)
+++.|.|++|.||||+.+.+... ...+ +.|. ..++..+....++..-... -..-.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~St-------------F~~e~ 98 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMST-------------FMVEL 98 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccch-------------HHHHH
Confidence 78999999999999999999873 3222 1111 0122222222221111111 11112
Q ss_pred HHHHHHHHhccCCeEEEEEecCCCcc---cccc----cc---cCCCCcEEEEEeCchHHHhhc
Q 044393 243 DRLRLMFSESKGRKILIILDDVWKEL---DLET----VG---IPANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 243 ~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~----l~---~~~~~~~iivTtr~~~v~~~~ 295 (513)
..+..++.... ++.|++||++.... +-.. +. ....++.+|++||+..++...
T Consensus 99 ~~~~~il~~~~-~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 99 SETSHILSNCT-SRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHhCC-CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 22333333333 78999999984332 2111 11 111378999999998876543
No 459
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0014 Score=61.97 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
+.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 22 ~~is~~i~~G--e~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 22 FDINLDIYKR--EVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333334455 899999999999999999998764
No 460
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.00053 Score=64.71 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 19 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 19 LKKINLDIEEN--QVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 34444444556 899999999999999999998753
No 461
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0004 Score=62.99 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
++.+...+.++ ..|+|+|.+|+|||||.+.+++-.++.
T Consensus 43 L~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 43 LKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred ecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 34444445566 899999999999999999999988765
No 462
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.29 E-value=0.00028 Score=64.79 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
++++|+|++|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 463
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.29 E-value=0.00066 Score=67.60 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+....
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p 76 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPV 76 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 89999999999999999999887653
No 464
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.29 E-value=0.00015 Score=75.74 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++..
T Consensus 275 il~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~G~~ 310 (490)
T PRK10938 275 ILHNLSWQVNPG--EHWQIVGPNGAGKSTLLSLITGDH 310 (490)
T ss_pred EEeeceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCC
Confidence 445555445556 899999999999999999999854
No 465
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.013 Score=57.47 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCc-hHHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCC
Q 044393 254 GRKILIILDDVWKELD------LETVGIPANCCKILLTTRL-QQVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVAD 325 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~-~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 325 (513)
++.-++|+|+++.... +..+..|.+++.+|++|.+ ..+...+. -...+.+.+++.++..+.+... +. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---A 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---C
Confidence 4566889999876532 3444455557766666665 44443332 2368999999999999998765 21 1
Q ss_pred CchHHHHHHHHHHhCCCchHHHHHH
Q 044393 326 TTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 326 ~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+ ...++..++|.|+....+.
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 2345788999998554443
No 466
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.00024 Score=58.72 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+|.|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 467
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.26 E-value=0.0015 Score=69.95 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+...+.+| .+++|.|++|+|||||.+.+.+....
T Consensus 40 iL~~vs~~i~~G--e~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 40 LLKNVSGVAKPG--ELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred cccCCEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 444444445556 89999999999999999999987643
No 468
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.001 Score=69.08 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=81.9
Q ss_pred ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393 155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW 228 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (513)
.+|-++..++|+..|. +-..++++++||+|+|||+|++.++.....+ |-.. .++.-.+..++-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~---sLGGvrDEAEIRGH---- 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRI---SLGGVRDEAEIRGH---- 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEE---ecCccccHHHhccc----
Confidence 3477777888887772 1234899999999999999999999988755 4322 22222222211100
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----c----cccccc--------------CCCCcEEEE-
Q 044393 229 LGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----D----LETVGI--------------PANCCKILL- 284 (513)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~----~~~l~~--------------~~~~~~iiv- 284 (513)
...+-+.-+......+ ...+.+.=|++||+++... | +-.++. +..=|.|++
T Consensus 396 -RRTYIGamPGrIiQ~m----kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 396 -RRTYIGAMPGKIIQGM----KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred -cccccccCChHHHHHH----HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 0000011111111112 2223366799999985431 1 111111 111244444
Q ss_pred -EeCchH-H-HhhcCCcceeecCCCChHhHHHHHHHhc
Q 044393 285 -TTRLQQ-V-CDRMGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 285 -Ttr~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
|..+-+ + ...+.....|++.+.+++|-.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333322 1 1223334789999999999988887766
No 469
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.26 E-value=0.0024 Score=58.11 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCcccccccc-------cC--CC-CcEEEEEeCchHHHhhcCCcceeec
Q 044393 254 GRKILIILDDVWKELDLETVG-------IP--AN-CCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~~~~l~-------~~--~~-~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
.++-+++||++....|..... .. .. +..||++||+...... +...+.+
T Consensus 138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 378899999998877643221 11 11 5689999999876643 3355554
No 470
>PRK09183 transposase/IS protein; Provisional
Probab=97.26 E-value=0.00049 Score=64.99 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+.|+|++|+|||+||..+++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999877544
No 471
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.25 E-value=0.001 Score=71.26 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.++.+.-.+.++ ..++|+|++|+|||||++.+.+...+.
T Consensus 356 il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 356 VLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455555555666 899999999999999999998887653
No 472
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.25 E-value=0.00074 Score=62.37 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+..+ .+++|+|++|+|||||++.+.....
T Consensus 21 l~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 21 LFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444555 8999999999999999999998654
No 473
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0028 Score=61.31 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+|.|+|.+|+||||+++.+.+-.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~Pq 376 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQ 376 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 799999999999999999998887765
No 474
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.0016 Score=61.54 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 19 l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 19 VKNVTMKIFKN--QITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeeeeEeecCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 44444445556 899999999999999999999754
No 475
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.014 Score=59.83 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=47.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWELKE-KDEEERADRLRLMFSES 252 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~l~ 252 (513)
.+|+|+|++|+||||++..++.....+.....+..++..... .....+......++..... .+.......+.. +
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~---l- 426 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER---L- 426 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH---h-
Confidence 899999999999999999998876543222334444433211 1222333333334433222 222333333332 2
Q ss_pred cCCeEEEEEecCC
Q 044393 253 KGRKILIILDDVW 265 (513)
Q Consensus 253 ~~~~~LlVLDd~~ 265 (513)
. ..-+|++|.+-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 2 45588899874
No 476
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.00034 Score=66.40 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
|+...++.+...+..+ .+++|+|++|+|||||++.+....
T Consensus 19 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 19 GNFMAVRDSHVPIRKN--EITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHccc
Confidence 4333445555555566 899999999999999999998765
No 477
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0018 Score=61.25 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
++.+...+..+ .+++|+|++|+|||||++.++..
T Consensus 21 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 21 LKGIDLDFNQN--EITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcc
Confidence 34444444555 89999999999999999999875
No 478
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0062 Score=61.03 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-Hhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SES 252 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~ 252 (513)
...+.+.|++|+|||+||..++..- .|..+-.++...- -+.++......+.+.+ ...
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~m------------------iG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDM------------------IGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHc------------------cCccHHHHHHHHHHHHHHhh
Confidence 4567889999999999999988754 3765544421111 1122222333333322 122
Q ss_pred cCCeEEEEEecCCCcccccccccCCC-----------------CcE--EEEEeCchHHHhhcCC----cceeecCCCCh-
Q 044393 253 KGRKILIILDDVWKELDLETVGIPAN-----------------CCK--ILLTTRLQQVCDRMGC----DTRIKLDALDQ- 308 (513)
Q Consensus 253 ~~~~~LlVLDd~~~~~~~~~l~~~~~-----------------~~~--iivTtr~~~v~~~~~~----~~~~~l~~L~~- 308 (513)
...-.+||+||+....||-.+++.+. |-+ |+-||....+...|+. ...|.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 23667999999988888766653321 333 4445556667666543 25788999887
Q ss_pred HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
++..+.++..-- ..+.....++++...+| +-..|+.+-.++
T Consensus 676 ~~~~~vl~~~n~--fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 676 EQLLEVLEELNI--FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHHHHHHccC--CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 667777765421 12333455566666666 333444444443
No 479
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0013 Score=62.01 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
+.+...+.++ .+++|+|++|+|||||++.+++..
T Consensus 20 ~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 20 KNVNLDIPKN--SVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhh
Confidence 3333334455 899999999999999999998753
No 480
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.22 E-value=0.00096 Score=71.25 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++.+.-.+.+| ..++|+|++|+|||||++.+.+...+
T Consensus 355 iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 355 ALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 455555555666 89999999999999999999988765
No 481
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0029 Score=60.08 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++.+...+.++ .+++|+|++|+|||||++.+++...
T Consensus 23 l~~isl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 23 IEGISMDIYRN--KVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34444444455 8999999999999999999998654
No 482
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.21 E-value=0.00069 Score=67.36 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=27.6
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.-.+..+ .+-++.|.+|.|||||.+.+|.-+++
T Consensus 23 V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P 56 (501)
T COG3845 23 VSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQP 56 (501)
T ss_pred eeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccC
Confidence 33334455 78999999999999999999998765
No 483
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.01 Score=56.86 Aligned_cols=194 Identities=24% Similarity=0.247 Sum_probs=109.8
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|-+..+++|...+.- +.++=|.++||+|.|||-||+.+++..... | +-+..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg---- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG---- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc----
Confidence 33445667777777776631 135679999999999999999999987654 3 32221
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCcc----------c----------cccc--cc
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKEL----------D----------LETV--GI 275 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~----------~----------~~~l--~~ 275 (513)
.++.+..-. +-...++.+|.+ ....+++|.+|+++..- | +.++ ..
T Consensus 219 ----SElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 219 ----SELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ----HHHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 122221111 112333443333 23578999999985421 0 1111 02
Q ss_pred CCCCcEEEEEeCchHHHhh-----cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch----HH
Q 044393 276 PANCCKILLTTRLQQVCDR-----MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL----AI 346 (513)
Q Consensus 276 ~~~~~~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL----ai 346 (513)
+.++.+||..|...+..+. -.-.+.+++..-+.+.-.++|+-+...-....+ -..+.|++.|.|..= |+
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d--vd~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD--VDLELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC--cCHHHHHHhcCCCchHHHHHH
Confidence 2237899988876544322 123367788766666667777766653221111 124668888888764 56
Q ss_pred HHHHHHhc--C-C---ChHHHHHHHHHHhh
Q 044393 347 KVVGSALT--G-R---NADEWNVALDKLQN 370 (513)
Q Consensus 347 ~~~~~~l~--~-~---~~~~w~~~l~~l~~ 370 (513)
.+=|++++ . + +.+....+.+++..
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 66677764 1 1 44555555555433
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0009 Score=64.71 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+.-.+.++ ..++++||+|+|||||.+.++.-..+
T Consensus 20 ~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 20 KDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred ecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3333344455 89999999999999999999988765
No 485
>PRK04132 replication factor C small subunit; Provisional
Probab=97.19 E-value=0.0096 Score=64.84 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=91.3
Q ss_pred EEc--CCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCe
Q 044393 179 LHG--LGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRK 256 (513)
Q Consensus 179 I~G--~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~ 256 (513)
+.| |.++||||+|..+++..-....-..++-++.+...... ..++++..+.... ...+.+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~----------------~~~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVKEFARTK----------------PIGGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcC----------------CcCCCCC
Confidence 346 88999999999999987443212235556666544433 3344443321100 1112245
Q ss_pred EEEEEecCCCcc--c---ccc-cccCCCCcEEEEEeCch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCch
Q 044393 257 ILIILDDVWKEL--D---LET-VGIPANCCKILLTTRLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTL 328 (513)
Q Consensus 257 ~LlVLDd~~~~~--~---~~~-l~~~~~~~~iivTtr~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 328 (513)
-++|||++.... . +.. +..+.+.+++|+++.+. .+...+. ....+.+.+++.++-...+...+..+... -.
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~ 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LT 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CC
Confidence 799999997763 2 222 22334477777777664 2333322 23689999999999988888766432211 12
Q ss_pred HHHHHHHHHHhCCCchHHHH
Q 044393 329 TDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 329 ~~~~~~i~~~~~G~PLai~~ 348 (513)
++....|++.|+|.+..+..
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 56788999999998864433
No 486
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.18 E-value=0.0036 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+++|+|++|.|||||...++.-..+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~ 52 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPA 52 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCC
Confidence 899999999999999999998876543
No 487
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0043 Score=60.58 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=46.9
Q ss_pred CeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCC
Q 044393 255 RKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADT 326 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~ 326 (513)
++-++|+|++..... +..+..+..+..+|++|++.. +...+. ....+.+.+++.+++.+.+.+. +. ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---AE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---Cc
Confidence 444555566544321 222233334677888888754 332222 2267899999999999888754 21 11
Q ss_pred chHHHHHHHHHHhCCCchH
Q 044393 327 TLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 327 ~~~~~~~~i~~~~~G~PLa 345 (513)
.. ..+..++|.|+.
T Consensus 189 --~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 189 --PE---ERLAFHSGAPLF 202 (325)
T ss_pred --HH---HHHHHhCCChhh
Confidence 11 123568899964
No 488
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.15 E-value=0.00036 Score=74.25 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..++++...+.++ ..++|+|++|+|||||++.+.+-...
T Consensus 341 ~~~vl~~is~~i~~G--e~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 341 KKPVLKDISFSIEPG--EKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CCccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345677777777777 89999999999999999999887765
No 489
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0027 Score=64.68 Aligned_cols=93 Identities=22% Similarity=0.354 Sum_probs=58.3
Q ss_pred cccccchhHHHHHHHHHHh---cC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393 152 FSSFETTKSACNQITEALK---KG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (513)
+..+.|-+..+.+|...+. .. .++-|.++||+|+|||.||+.+++....- | +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4445677777776666552 11 24678999999999999999999998865 2 333221
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCC
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~ 266 (513)
+|+. ...+.++..+.+... ...+.-++++++|+++.
T Consensus 258 ----eivS----GvSGESEkkiRelF~---~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVS----GVSGESEKKIRELFD---QAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhc----ccCcccHHHHHHHHH---HHhccCCeEEEeecccc
Confidence 1221 123334444333333 44445899999999854
No 490
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.13 E-value=0.0092 Score=65.43 Aligned_cols=169 Identities=20% Similarity=0.203 Sum_probs=88.3
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|.+..++.+...+.- ...+-+.++|++|+||||||+.+++..... | +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E-----EEEecH---
Confidence 34456888777777666521 123678999999999999999999876432 1 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccccCC--CCc
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVGIPA--NCC 280 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~~~~--~~~ 280 (513)
.+ .. ...+.........+. ......+.+|+|||+..... +..+.... .+.
T Consensus 247 -~i----~~----~~~g~~~~~l~~lf~---~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EI----MS----KYYGESEERLREIFK---EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HH----hc----ccccHHHHHHHHHHH---HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 00 001111111222222 22234678999999854210 11111111 133
Q ss_pred EEEE-EeCchH-HHhhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 281 KILL-TTRLQQ-VCDRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 281 ~iiv-Ttr~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
.+++ ||+... +-..+ .....+.+...+.++-.++++.......... ......+++.+.|..-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 3333 555432 11111 1235677888888888888886553211111 1235678888888754
No 491
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0029 Score=62.11 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.+++...
T Consensus 97 ~L~~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 97 VLHDLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence 445555555566 8999999999999999999998753
No 492
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0028 Score=68.08 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.+...+..+ .+++|+|++|+|||||++.++....
T Consensus 339 ~l~~vs~~i~~G--e~~~lvG~nGsGKSTLlk~i~Gl~~ 375 (623)
T PRK10261 339 AVEKVSFDLWPG--ETLSLVGESGSGKSTTGRALLRLVE 375 (623)
T ss_pred EEeeeEeEEcCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344454445555 8999999999999999999988754
No 493
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.00025 Score=65.41 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh--hcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC---C-CCHHHHHHHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR--QEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK---E-KDEEERADRLRL 247 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~~~~~l~~ 247 (513)
.+++.|+|++|.||||+++.+.-..- .-+.|...--..+ .....++..++.... . ..-......+..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~-------~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADI-------PIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEE-------eccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 47999999999999999998764321 1111111100001 112222222222110 0 111111222222
Q ss_pred HHHhccCCeEEEEEecC---CCccccccc-------ccCCCCcEEEEEeCchHHHhhcCCc---ceeecCCCChH--hHH
Q 044393 248 MFSESKGRKILIILDDV---WKELDLETV-------GIPANCCKILLTTRLQQVCDRMGCD---TRIKLDALDQA--EGL 312 (513)
Q Consensus 248 ~~~l~~~~~~LlVLDd~---~~~~~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~---~~~~l~~L~~~--e~~ 312 (513)
.+.... ++-|++||++ ++..|...+ .....++.+|+|||..++....... ...++.....+ +..
T Consensus 103 il~~~~-~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 103 ILKSAT-ENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHHhCC-CCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 222233 7889999999 666552221 1112378999999986665433211 11222111111 111
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 313 DLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 313 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
.|.......... ...+-.+++.+ |+|-.+..-|.-+
T Consensus 182 -~~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~ 217 (222)
T cd03285 182 -TMLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQK 217 (222)
T ss_pred -eEEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHH
Confidence 111111111111 34566677666 8888777666544
No 494
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0081 Score=61.97 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+-|.++||+|+|||++|+.+++..... | +++... + ++. .+-+.++..+.+..+ ....
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----E----L~s----k~vGeSEr~ir~iF~---kAR~ 525 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----E----LFS----KYVGESERAIREVFR---KARQ 525 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----H----HHH----HhcCchHHHHHHHHH---HHhh
Confidence 5789999999999999999999988765 3 333221 0 110 111122222222222 2223
Q ss_pred CCeEEEEEecCCCccc-------------ccccc---cCCC---CcEEEEEeCchHHHhh--cC---CcceeecCCCChH
Q 044393 254 GRKILIILDDVWKELD-------------LETVG---IPAN---CCKILLTTRLQQVCDR--MG---CDTRIKLDALDQA 309 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~-------------~~~l~---~~~~---~~~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~ 309 (513)
-.++++.||+++.... +.+++ .... +.-||-.|..++..+. +. ....+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 3668999998854311 11111 1111 2233333333322211 22 3467888888888
Q ss_pred hHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 310 EGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 310 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
.-.++|+.++..-...+. -...+|++++.|..=
T Consensus 606 aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSED--VDLEELAQATEGYSG 638 (693)
T ss_pred HHHHHHHHHHhcCCCCcc--ccHHHHHHHhccCCh
Confidence 889999988864322221 124567777766553
No 495
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.0025 Score=61.84 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
+..+.|+||+|+|||.+|+.+++.....
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 5789999999999999999999998754
No 496
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0036 Score=58.85 Aligned_cols=82 Identities=30% Similarity=0.312 Sum_probs=49.9
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHH
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD 243 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 243 (513)
.+..++.++ .-+.++|++|+|||.||..+.+..- +.. ..+.+++ ..+++.++...... .. ...
T Consensus 97 ~~~~~~~~~--~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~----~~---~~~ 159 (254)
T COG1484 97 SLVEFFERG--ENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDE----GR---LEE 159 (254)
T ss_pred HHHHHhccC--CcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhc----Cc---hHH
Confidence 344455533 7899999999999999999999998 422 3344553 34455555554432 11 111
Q ss_pred HHHHHHHhccCCeEEEEEecCCC
Q 044393 244 RLRLMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 244 ~l~~~~~l~~~~~~LlVLDd~~~ 266 (513)
.+.. ... +-=||||||+-.
T Consensus 160 ~l~~---~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 160 KLLR---ELK-KVDLLIIDDIGY 178 (254)
T ss_pred HHHH---Hhh-cCCEEEEecccC
Confidence 1221 111 445999999843
No 497
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.09 E-value=0.00084 Score=65.01 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++.+.-.|..+ ..++|+|.+|+|||||.+.+..-...
T Consensus 303 Vd~isl~L~~g--qTlGlVGESGSGKsTlG~allrL~~s 339 (534)
T COG4172 303 VDGISLTLRRG--QTLGLVGESGSGKSTLGLALLRLIPS 339 (534)
T ss_pred eccceeEecCC--CeEEEEecCCCCcchHHHHHHhhcCc
Confidence 34444455566 89999999999999999999887654
No 498
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.06 E-value=0.0032 Score=60.35 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=47.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDP-DIINVQSELVKWLGWELKE-KDEEERADRLRLMFSE 251 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~l 251 (513)
.+++|+|++|+||||++..++...... +.+ .+..++..... .....+....+.++.+... .+.......+.. +
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~---~ 270 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR---L 270 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH---c
Confidence 799999999999999999999887654 222 34445443211 1223334444445544322 223333333332 2
Q ss_pred ccCCeEEEEEecC
Q 044393 252 SKGRKILIILDDV 264 (513)
Q Consensus 252 ~~~~~~LlVLDd~ 264 (513)
. ..=++++|.+
T Consensus 271 -~-~~d~vliDt~ 281 (282)
T TIGR03499 271 -R-DKDLILIDTA 281 (282)
T ss_pred -c-CCCEEEEeCC
Confidence 2 3457888864
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0029 Score=62.41 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=50.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLGWELKEK-DEEERADRLRLMFSES 252 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~l~ 252 (513)
.+++++|++|+||||++..++...........+..++... .....+.+....+.++.+.... +..+....+. .+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~---~l~ 214 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA---ELR 214 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH---Hhc
Confidence 7999999999999999999998765431123444554332 1234455666666666654322 2222222222 222
Q ss_pred cCCeEEEEEecCC
Q 044393 253 KGRKILIILDDVW 265 (513)
Q Consensus 253 ~~~~~LlVLDd~~ 265 (513)
++-++++|.+-
T Consensus 215 --~~DlVLIDTaG 225 (374)
T PRK14722 215 --NKHMVLIDTIG 225 (374)
T ss_pred --CCCEEEEcCCC
Confidence 34567799874
No 500
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.03 E-value=0.0031 Score=57.74 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
.++.|+|++|+|||+|+.+++...... ...++|+.... ++...+.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHH
Confidence 799999999999999999988776543 45677887765 4544433
Done!