Query 044393
Match_columns 513
No_of_seqs 381 out of 3749
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-47 3.6E-52 402.8 23.8 309 156-484 131-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-39 1.1E-43 371.8 27.3 317 148-484 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 4E-40 1.4E-44 350.6 17.5 284 155-477 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.5E-37 2.9E-41 324.4 26.7 312 149-481 120-449 (591)
5 2qen_A Walker-type ATPase; unk 99.7 4.8E-16 1.6E-20 153.4 23.8 284 151-478 10-349 (350)
6 1w5s_A Origin recognition comp 99.7 3.6E-15 1.2E-19 150.7 23.0 301 153-473 22-387 (412)
7 2fna_A Conserved hypothetical 99.7 5.2E-15 1.8E-19 146.3 20.8 281 152-477 12-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.5 1.9E-13 6.4E-18 110.4 11.5 80 3-95 2-82 (115)
9 2qby_A CDC6 homolog 1, cell di 99.5 1.2E-12 4.1E-17 130.8 19.5 286 153-461 20-348 (386)
10 1fnn_A CDC6P, cell division co 99.5 1.1E-11 3.7E-16 124.0 24.9 284 153-461 17-351 (389)
11 2qby_B CDC6 homolog 3, cell di 99.5 8.2E-12 2.8E-16 124.7 22.9 280 153-461 20-339 (384)
12 2v1u_A Cell division control p 99.4 1.1E-11 3.8E-16 123.8 21.1 284 153-461 19-351 (387)
13 1njg_A DNA polymerase III subu 99.4 1.6E-11 5.5E-16 114.1 16.8 197 149-353 19-231 (250)
14 2chg_A Replication factor C sm 99.3 5.7E-11 2E-15 108.7 17.5 185 148-350 12-204 (226)
15 1sxj_B Activator 1 37 kDa subu 99.1 9.1E-10 3.1E-14 106.9 14.8 187 148-351 16-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.0 3.7E-09 1.3E-13 102.8 13.4 182 149-351 21-213 (327)
17 1hqc_A RUVB; extended AAA-ATPa 98.9 4.5E-09 1.6E-13 102.1 12.1 175 149-353 8-214 (324)
18 2chq_A Replication factor C sm 98.9 1.5E-08 5E-13 98.2 13.0 184 148-349 12-203 (319)
19 1jr3_A DNA polymerase III subu 98.9 2.8E-08 9.6E-13 98.5 14.6 194 149-350 12-221 (373)
20 3bos_A Putative DNA replicatio 98.8 2.9E-08 9.8E-13 91.8 10.9 171 151-351 26-218 (242)
21 3pvs_A Replication-associated 98.7 2.9E-07 9.8E-12 92.9 17.1 180 146-350 19-215 (447)
22 1jbk_A CLPB protein; beta barr 98.7 1E-07 3.5E-12 84.5 11.7 150 150-315 19-194 (195)
23 1sxj_D Activator 1 41 kDa subu 98.7 1.9E-07 6.5E-12 91.7 14.4 192 148-349 32-234 (353)
24 3te6_A Regulatory protein SIR3 98.7 6.8E-07 2.3E-11 85.4 17.0 162 155-320 22-212 (318)
25 1sxj_E Activator 1 40 kDa subu 98.7 2.3E-07 7.7E-12 91.2 13.6 193 149-350 10-237 (354)
26 3pfi_A Holliday junction ATP-d 98.6 4.3E-06 1.5E-10 81.4 20.6 170 148-350 24-227 (338)
27 3h4m_A Proteasome-activating n 98.6 1.3E-06 4.5E-11 82.9 15.9 175 150-348 14-229 (285)
28 2z4s_A Chromosomal replication 98.6 5E-07 1.7E-11 91.2 13.5 180 151-348 103-304 (440)
29 1sxj_A Activator 1 95 kDa subu 98.5 4.6E-07 1.6E-11 93.6 12.6 192 148-350 34-253 (516)
30 1sxj_C Activator 1 40 kDa subu 98.5 1.2E-06 4.2E-11 85.5 14.5 178 148-346 20-208 (340)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.5 5.5E-06 1.9E-10 77.4 17.9 176 152-349 5-221 (262)
32 1d2n_A N-ethylmaleimide-sensit 98.5 7.1E-06 2.4E-10 77.3 18.7 173 171-371 61-264 (272)
33 3uk6_A RUVB-like 2; hexameric 98.5 3.9E-06 1.3E-10 82.8 17.7 192 152-350 43-303 (368)
34 1xwi_A SKD1 protein; VPS4B, AA 98.5 9.7E-06 3.3E-10 78.2 19.4 177 151-351 10-224 (322)
35 1a5t_A Delta prime, HOLB; zinc 98.4 5.6E-06 1.9E-10 80.5 16.8 169 157-350 6-205 (334)
36 3u61_B DNA polymerase accessor 98.4 2.8E-06 9.5E-11 82.3 14.6 173 148-347 21-213 (324)
37 3eie_A Vacuolar protein sortin 98.4 1.8E-05 6.1E-10 76.5 19.5 178 149-351 14-229 (322)
38 3b9p_A CG5977-PA, isoform A; A 98.4 1.3E-05 4.4E-10 76.5 18.4 176 150-350 18-233 (297)
39 1l8q_A Chromosomal replication 98.4 1.8E-06 6.1E-11 83.7 11.2 163 160-345 21-203 (324)
40 3d8b_A Fidgetin-like protein 1 98.4 1.6E-05 5.5E-10 78.0 17.8 178 151-351 82-296 (357)
41 2qp9_X Vacuolar protein sortin 98.3 1.9E-05 6.4E-10 77.4 17.9 176 151-351 49-262 (355)
42 3syl_A Protein CBBX; photosynt 98.3 3.5E-06 1.2E-10 80.9 12.4 146 155-320 33-218 (309)
43 2zan_A Vacuolar protein sortin 98.3 3.7E-05 1.3E-09 77.6 19.3 180 150-351 131-346 (444)
44 3vfd_A Spastin; ATPase, microt 98.3 3.7E-05 1.3E-09 76.4 18.3 179 149-350 111-326 (389)
45 3cf0_A Transitional endoplasmi 98.2 1.2E-05 4.3E-10 76.7 13.7 171 151-345 13-223 (301)
46 3ec2_A DNA replication protein 98.2 4.1E-06 1.4E-10 73.5 9.0 113 158-289 19-143 (180)
47 2p65_A Hypothetical protein PF 98.2 4.8E-06 1.6E-10 73.2 8.7 51 150-200 19-69 (187)
48 1qvr_A CLPB protein; coiled co 98.1 1.1E-05 3.7E-10 88.6 12.3 157 149-319 166-345 (854)
49 4b4t_J 26S protease regulatory 98.1 0.00011 3.9E-09 71.9 17.4 169 152-344 147-355 (405)
50 2gno_A DNA polymerase III, gam 98.1 1.7E-05 5.8E-10 75.7 11.4 143 157-319 1-152 (305)
51 3pxg_A Negative regulator of g 98.1 3.8E-05 1.3E-09 78.1 14.7 149 149-320 176-339 (468)
52 2w58_A DNAI, primosome compone 98.0 1.4E-05 4.6E-10 71.6 8.9 53 158-212 34-90 (202)
53 2pze_A Cystic fibrosis transme 98.0 4E-05 1.4E-09 69.9 11.8 26 175-200 35-60 (229)
54 4b4t_H 26S protease regulatory 98.0 0.00017 5.8E-09 71.7 16.8 166 154-343 210-415 (467)
55 4g1u_C Hemin import ATP-bindin 98.0 2.2E-05 7.7E-10 73.3 9.7 30 169-200 34-63 (266)
56 1lv7_A FTSH; alpha/beta domain 98.0 0.00044 1.5E-08 64.2 18.5 174 150-347 9-222 (257)
57 3hu3_A Transitional endoplasmi 98.0 0.00013 4.4E-09 74.3 15.2 167 152-342 203-406 (489)
58 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00019 6.3E-09 77.9 17.4 155 150-319 183-362 (758)
59 2nq2_C Hypothetical ABC transp 97.9 2.3E-05 8E-10 72.6 8.7 26 175-200 32-57 (253)
60 4b4t_L 26S protease subunit RP 97.9 0.0002 6.8E-09 71.3 15.9 169 152-344 180-388 (437)
61 2pcj_A ABC transporter, lipopr 97.9 3.2E-05 1.1E-09 70.3 9.2 26 175-200 31-56 (224)
62 1sgw_A Putative ABC transporte 97.9 1.9E-05 6.5E-10 71.1 7.5 26 175-200 36-61 (214)
63 1vpl_A ABC transporter, ATP-bi 97.9 3.5E-05 1.2E-09 71.5 9.5 26 175-200 42-67 (256)
64 3tif_A Uncharacterized ABC tra 97.9 2.2E-05 7.7E-10 71.9 8.0 26 175-200 32-57 (235)
65 1in4_A RUVB, holliday junction 97.9 0.00035 1.2E-08 67.7 17.0 173 147-350 19-223 (334)
66 4b4t_I 26S protease regulatory 97.9 0.00034 1.2E-08 68.8 16.7 170 151-344 180-389 (437)
67 2zu0_C Probable ATP-dependent 97.9 5.2E-05 1.8E-09 70.8 10.5 27 169-197 43-69 (267)
68 4b4t_M 26S protease regulatory 97.9 8.7E-05 3E-09 73.8 12.6 169 151-343 179-387 (434)
69 3gfo_A Cobalt import ATP-bindi 97.9 2E-05 6.9E-10 73.8 7.6 30 169-200 31-60 (275)
70 2cbz_A Multidrug resistance-as 97.9 3.8E-05 1.3E-09 70.4 9.4 26 175-200 32-57 (237)
71 3tui_C Methionine import ATP-b 97.9 5.1E-05 1.7E-09 73.6 10.6 31 168-200 50-80 (366)
72 2w0m_A SSO2452; RECA, SSPF, un 97.9 4.5E-05 1.5E-09 69.6 9.8 110 175-289 24-168 (235)
73 2ehv_A Hypothetical protein PH 97.9 1.1E-05 3.7E-10 74.8 5.4 23 175-197 31-53 (251)
74 3nh6_A ATP-binding cassette SU 97.9 6.8E-06 2.3E-10 78.2 3.8 30 169-200 77-106 (306)
75 1mv5_A LMRA, multidrug resista 97.9 5.6E-05 1.9E-09 69.6 9.9 25 175-199 29-53 (243)
76 3b5x_A Lipid A export ATP-bind 97.9 2.5E-05 8.4E-10 81.8 8.4 39 160-200 357-395 (582)
77 2olj_A Amino acid ABC transpor 97.9 3.2E-05 1.1E-09 72.0 8.2 26 175-200 51-76 (263)
78 2pjz_A Hypothetical protein ST 97.9 6E-05 2E-09 70.1 10.0 116 175-295 31-191 (263)
79 1ji0_A ABC transporter; ATP bi 97.9 3.6E-05 1.2E-09 70.8 8.4 26 175-200 33-58 (240)
80 1v43_A Sugar-binding transport 97.8 3.3E-05 1.1E-09 75.4 8.4 26 175-200 38-63 (372)
81 2kjq_A DNAA-related protein; s 97.8 2.6E-05 8.9E-10 65.9 6.7 27 174-200 36-62 (149)
82 3pxi_A Negative regulator of g 97.8 0.00012 4E-09 79.3 13.5 150 149-320 176-339 (758)
83 2qi9_C Vitamin B12 import ATP- 97.8 3.3E-05 1.1E-09 71.4 7.8 25 175-199 27-51 (249)
84 2yz2_A Putative ABC transporte 97.8 4.4E-05 1.5E-09 71.3 8.8 26 175-200 34-59 (266)
85 4b4t_K 26S protease regulatory 97.8 0.00046 1.6E-08 68.5 16.4 168 152-343 171-379 (428)
86 3fvq_A Fe(3+) IONS import ATP- 97.8 4.6E-05 1.6E-09 73.9 8.8 26 175-200 31-56 (359)
87 3d31_A Sulfate/molybdate ABC t 97.8 5.9E-05 2E-09 73.0 9.6 125 175-303 27-201 (348)
88 2ce7_A Cell division protein F 97.8 0.00034 1.2E-08 70.6 15.4 168 152-343 15-221 (476)
89 2ff7_A Alpha-hemolysin translo 97.8 7.5E-05 2.6E-09 68.9 9.8 26 175-200 36-61 (247)
90 2ixe_A Antigen peptide transpo 97.8 9.4E-05 3.2E-09 69.3 10.5 26 175-200 46-71 (271)
91 2d2e_A SUFC protein; ABC-ATPas 97.8 4.2E-05 1.4E-09 70.8 7.8 23 175-197 30-52 (250)
92 2cvh_A DNA repair and recombin 97.8 6.1E-05 2.1E-09 68.1 8.3 86 175-269 21-119 (220)
93 1n0w_A DNA repair protein RAD5 97.8 0.00012 3.9E-09 67.4 10.1 92 175-269 25-133 (243)
94 2onk_A Molybdate/tungstate ABC 97.7 4.9E-05 1.7E-09 69.8 7.4 26 175-200 25-50 (240)
95 1b0u_A Histidine permease; ABC 97.7 4.8E-05 1.6E-09 70.9 7.4 26 175-200 33-58 (262)
96 1z47_A CYSA, putative ABC-tran 97.7 7.3E-05 2.5E-09 72.5 8.9 29 170-200 39-67 (355)
97 2bbs_A Cystic fibrosis transme 97.7 8.7E-05 3E-09 70.1 9.0 26 175-200 65-90 (290)
98 4gp7_A Metallophosphoesterase; 97.7 7.6E-05 2.6E-09 64.7 7.7 21 175-195 10-30 (171)
99 2it1_A 362AA long hypothetical 97.7 0.00011 3.9E-09 71.4 9.7 26 175-200 30-55 (362)
100 3rlf_A Maltose/maltodextrin im 97.7 5.8E-05 2E-09 73.7 7.5 26 175-200 30-55 (381)
101 1ofh_A ATP-dependent HSL prote 97.7 0.00053 1.8E-08 65.4 14.2 45 155-199 17-75 (310)
102 2yyz_A Sugar ABC transporter, 97.7 0.00012 4E-09 71.2 9.2 26 175-200 30-55 (359)
103 4a74_A DNA repair and recombin 97.7 6.3E-05 2.2E-09 68.5 7.0 92 175-267 26-137 (231)
104 1yqt_A RNAse L inhibitor; ATP- 97.7 5.2E-05 1.8E-09 78.3 7.0 124 175-303 313-475 (538)
105 3bk7_A ABC transporter ATP-bin 97.7 8.4E-05 2.9E-09 77.6 8.6 124 175-303 383-545 (607)
106 2ghi_A Transport protein; mult 97.7 0.00016 5.6E-09 67.2 9.7 25 175-199 47-71 (260)
107 1g6h_A High-affinity branched- 97.7 4.2E-05 1.4E-09 71.1 5.5 30 169-200 30-59 (257)
108 1ye8_A Protein THEP1, hypothet 97.6 0.00018 6E-09 62.8 9.1 25 176-200 2-26 (178)
109 1oxx_K GLCV, glucose, ABC tran 97.6 8.5E-05 2.9E-09 72.2 7.7 26 175-200 32-57 (353)
110 1g29_1 MALK, maltose transport 97.6 0.00015 5.2E-09 70.9 9.5 26 175-200 30-55 (372)
111 2r62_A Cell division protease 97.6 5.4E-05 1.9E-09 70.9 6.0 26 175-200 45-70 (268)
112 4fcw_A Chaperone protein CLPB; 97.6 0.00049 1.7E-08 65.8 12.0 46 155-200 19-73 (311)
113 3cf2_A TER ATPase, transitiona 97.5 0.0022 7.5E-08 68.7 17.1 148 174-345 238-409 (806)
114 3ozx_A RNAse L inhibitor; ATP 97.5 7.1E-05 2.4E-09 77.1 5.4 125 175-303 295-459 (538)
115 1yqt_A RNAse L inhibitor; ATP- 97.5 8.5E-05 2.9E-09 76.7 6.0 122 169-295 44-224 (538)
116 2iw3_A Elongation factor 3A; a 97.5 0.00024 8.1E-09 77.5 9.5 122 168-295 457-611 (986)
117 3j16_B RLI1P; ribosome recycli 97.5 0.00027 9.3E-09 73.7 9.4 126 175-304 379-542 (608)
118 3j16_B RLI1P; ribosome recycli 97.5 0.00026 8.8E-09 73.9 8.8 26 175-200 104-129 (608)
119 4a82_A Cystic fibrosis transme 97.4 5.6E-05 1.9E-09 79.0 3.6 26 175-200 368-393 (578)
120 3t15_A Ribulose bisphosphate c 97.4 0.0013 4.4E-08 62.4 12.8 26 174-199 36-61 (293)
121 3ozx_A RNAse L inhibitor; ATP 97.4 0.00022 7.5E-09 73.4 7.3 25 175-199 26-50 (538)
122 1cr0_A DNA primase/helicase; R 97.4 0.00045 1.6E-08 65.6 8.7 38 162-201 25-62 (296)
123 3m6a_A ATP-dependent protease 97.4 0.0024 8.2E-08 66.0 14.5 46 155-200 83-134 (543)
124 3gd7_A Fusion complex of cysti 97.3 0.00016 5.4E-09 71.1 5.3 29 169-199 44-72 (390)
125 3b60_A Lipid A export ATP-bind 97.3 7.1E-05 2.4E-09 78.4 2.8 26 175-200 370-395 (582)
126 2yl4_A ATP-binding cassette SU 97.3 7.7E-05 2.6E-09 78.3 2.9 26 175-200 371-396 (595)
127 2qgz_A Helicase loader, putati 97.3 0.00027 9.3E-09 67.5 6.4 53 158-212 133-189 (308)
128 2c9o_A RUVB-like 1; hexameric 97.3 0.0023 7.9E-08 64.7 13.6 49 151-199 35-88 (456)
129 3lda_A DNA repair protein RAD5 97.3 0.0004 1.4E-08 68.6 7.7 91 175-268 179-286 (400)
130 3bk7_A ABC transporter ATP-bin 97.3 0.00017 5.8E-09 75.4 5.2 29 169-199 114-142 (607)
131 3qf4_B Uncharacterized ABC tra 97.3 0.00014 4.7E-09 76.4 4.5 26 175-200 382-407 (598)
132 3jvv_A Twitching mobility prot 97.3 6.2E-05 2.1E-09 73.2 1.5 109 175-292 124-234 (356)
133 2x8a_A Nuclear valosin-contain 97.3 0.0025 8.5E-08 59.7 12.3 122 176-320 46-192 (274)
134 3qf4_A ABC transporter, ATP-bi 97.3 0.00036 1.2E-08 73.0 7.1 26 175-200 370-395 (587)
135 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00042 1.4E-08 66.8 6.2 116 161-290 160-276 (330)
136 2iw3_A Elongation factor 3A; a 97.2 0.00052 1.8E-08 74.8 7.4 51 250-303 915-971 (986)
137 1ojl_A Transcriptional regulat 97.2 0.0015 5.1E-08 62.2 9.7 45 155-199 4-50 (304)
138 3pxi_A Negative regulator of g 97.1 0.0009 3.1E-08 72.4 9.0 141 154-319 492-675 (758)
139 1ypw_A Transitional endoplasmi 97.1 0.0027 9.1E-08 68.9 12.5 147 152-320 203-386 (806)
140 1htw_A HI0065; nucleotide-bind 97.1 0.0003 1E-08 59.9 4.1 40 157-198 18-57 (158)
141 3ux8_A Excinuclease ABC, A sub 97.1 0.00078 2.7E-08 71.7 8.0 45 257-303 224-276 (670)
142 3hr8_A Protein RECA; alpha and 97.1 0.0016 5.4E-08 63.1 9.3 84 175-267 62-151 (356)
143 1pzn_A RAD51, DNA repair and r 97.1 0.00066 2.3E-08 66.0 6.5 94 175-269 132-245 (349)
144 3aez_A Pantothenate kinase; tr 97.1 0.0022 7.6E-08 61.1 9.8 28 173-200 89-116 (312)
145 2zr9_A Protein RECA, recombina 97.0 0.0021 7.1E-08 62.4 9.4 84 175-267 62-151 (349)
146 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0074 2.5E-07 61.3 13.4 144 175-343 65-236 (499)
147 3c8u_A Fructokinase; YP_612366 97.0 0.00064 2.2E-08 60.9 5.1 41 160-200 6-48 (208)
148 1nlf_A Regulatory protein REPA 97.0 0.0012 4.2E-08 62.0 7.2 25 175-199 31-55 (279)
149 2jeo_A Uridine-cytidine kinase 96.9 0.00049 1.7E-08 63.4 3.7 40 157-198 10-49 (245)
150 3io5_A Recombination and repai 96.9 0.007 2.4E-07 57.0 11.1 87 176-267 30-123 (333)
151 1rz3_A Hypothetical protein rb 96.8 0.0013 4.4E-08 58.5 5.8 43 158-200 3-48 (201)
152 3thx_A DNA mismatch repair pro 96.8 0.001 3.4E-08 72.7 5.9 22 174-195 662-683 (934)
153 2dr3_A UPF0273 protein PH0284; 96.8 0.0028 9.4E-08 58.1 8.2 37 175-213 24-60 (247)
154 1tf7_A KAIC; homohexamer, hexa 96.8 0.00077 2.6E-08 69.6 4.7 48 160-212 26-76 (525)
155 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0041 1.4E-07 67.3 10.5 45 154-198 459-512 (758)
156 1z6g_A Guanylate kinase; struc 96.8 0.00057 1.9E-08 61.7 3.0 36 161-198 12-47 (218)
157 2px0_A Flagellar biosynthesis 96.8 0.0045 1.6E-07 58.5 9.3 85 174-264 105-191 (296)
158 1v5w_A DMC1, meiotic recombina 96.8 0.0057 2E-07 59.2 10.1 92 175-267 123-231 (343)
159 3n70_A Transport activator; si 96.8 0.0011 3.9E-08 55.4 4.5 45 155-199 3-49 (145)
160 1xp8_A RECA protein, recombina 96.8 0.0048 1.7E-07 60.1 9.5 83 175-266 75-163 (366)
161 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00097 3.3E-08 63.1 4.3 23 175-197 124-146 (331)
162 1jr3_D DNA polymerase III, del 96.7 0.031 1.1E-06 54.0 15.2 158 167-348 11-183 (343)
163 4aby_A DNA repair protein RECN 96.7 0.0018 6.1E-08 64.7 6.3 45 257-303 317-368 (415)
164 3bh0_A DNAB-like replicative h 96.7 0.014 4.8E-07 55.7 12.3 62 161-228 57-118 (315)
165 3b85_A Phosphate starvation-in 96.6 0.0011 3.9E-08 59.2 3.8 29 169-200 19-47 (208)
166 1znw_A Guanylate kinase, GMP k 96.6 0.0011 3.6E-08 59.4 3.6 29 169-199 17-45 (207)
167 3vaa_A Shikimate kinase, SK; s 96.6 0.0012 4E-08 58.7 3.8 36 162-199 15-50 (199)
168 3g5u_A MCG1178, multidrug resi 96.6 0.0018 6E-08 73.9 6.0 30 169-200 413-442 (1284)
169 1zp6_A Hypothetical protein AT 96.6 0.00096 3.3E-08 58.7 3.0 23 175-197 10-32 (191)
170 3ice_A Transcription terminati 96.6 0.0034 1.2E-07 60.7 7.0 90 173-267 173-273 (422)
171 1u94_A RECA protein, recombina 96.6 0.0057 1.9E-07 59.4 8.7 83 175-266 64-152 (356)
172 1g5t_A COB(I)alamin adenosyltr 96.6 0.0035 1.2E-07 54.8 6.4 110 175-289 29-163 (196)
173 3ux8_A Excinuclease ABC, A sub 96.6 0.0032 1.1E-07 67.0 7.4 47 255-303 564-618 (670)
174 1qvr_A CLPB protein; coiled co 96.6 0.0028 9.5E-08 69.5 7.1 47 154-200 559-614 (854)
175 3a00_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 58.4 2.9 26 175-200 2-27 (186)
176 2z43_A DNA repair and recombin 96.6 0.011 3.8E-07 56.7 10.5 90 175-267 108-215 (324)
177 1kgd_A CASK, peripheral plasma 96.5 0.0014 4.6E-08 57.2 3.6 25 175-199 6-30 (180)
178 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 58.5 3.5 24 175-198 8-31 (205)
179 3thx_B DNA mismatch repair pro 96.5 0.0033 1.1E-07 68.4 7.2 24 174-197 673-696 (918)
180 1ewq_A DNA mismatch repair pro 96.5 0.0008 2.7E-08 72.0 2.3 24 175-198 577-600 (765)
181 2v9p_A Replication protein E1; 96.5 0.0018 6.2E-08 61.3 4.5 38 159-198 113-150 (305)
182 4eun_A Thermoresistant glucoki 96.5 0.0015 5.1E-08 58.0 3.7 25 174-198 29-53 (200)
183 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0069 2.4E-07 60.4 8.7 91 175-266 152-256 (473)
184 3e70_C DPA, signal recognition 96.5 0.027 9.4E-07 53.9 12.6 29 173-201 128-156 (328)
185 2i1q_A DNA repair and recombin 96.5 0.0082 2.8E-07 57.6 9.0 89 175-266 99-215 (322)
186 3cf2_A TER ATPase, transitiona 96.5 0.013 4.6E-07 62.7 11.2 146 174-343 511-683 (806)
187 3uie_A Adenylyl-sulfate kinase 96.4 0.0023 7.9E-08 56.8 4.5 27 174-200 25-51 (200)
188 3k1j_A LON protease, ATP-depen 96.4 0.0019 6.4E-08 67.9 4.4 52 147-200 35-86 (604)
189 2o8b_B DNA mismatch repair pro 96.4 0.003 1E-07 69.9 6.2 24 174-198 789-812 (1022)
190 1vma_A Cell division protein F 96.4 0.011 3.7E-07 56.1 9.2 87 174-266 104-197 (306)
191 1tf7_A KAIC; homohexamer, hexa 96.4 0.0025 8.6E-08 65.7 5.2 27 175-201 282-308 (525)
192 2r44_A Uncharacterized protein 96.4 0.0018 6.1E-08 62.5 3.8 45 153-199 27-71 (331)
193 3asz_A Uridine kinase; cytidin 96.4 0.002 6.7E-08 57.7 3.9 26 174-199 6-31 (211)
194 1kag_A SKI, shikimate kinase I 96.4 0.0015 5.2E-08 56.3 3.0 25 175-199 5-29 (173)
195 3tqc_A Pantothenate kinase; bi 96.4 0.0031 1.1E-07 60.2 5.2 45 155-199 69-117 (321)
196 1lvg_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 57.7 3.0 25 175-199 5-29 (198)
197 3kb2_A SPBC2 prophage-derived 96.3 0.002 6.9E-08 55.4 3.5 25 175-199 2-26 (173)
198 1s96_A Guanylate kinase, GMP k 96.3 0.002 7E-08 58.0 3.6 25 175-199 17-41 (219)
199 1wb9_A DNA mismatch repair pro 96.3 0.0066 2.2E-07 65.4 8.1 25 174-198 607-631 (800)
200 1ixz_A ATP-dependent metallopr 96.3 0.0052 1.8E-07 56.7 6.4 24 176-199 51-74 (254)
201 2vf7_A UVRA2, excinuclease ABC 96.3 0.0056 1.9E-07 66.0 7.3 47 256-304 752-806 (842)
202 3co5_A Putative two-component 96.3 0.0012 4.2E-08 55.0 1.8 46 154-199 5-52 (143)
203 1g8p_A Magnesium-chelatase 38 96.3 0.0023 7.8E-08 62.2 3.9 52 148-199 19-70 (350)
204 3tau_A Guanylate kinase, GMP k 96.3 0.0021 7.2E-08 57.5 3.4 26 174-199 8-33 (208)
205 3g5u_A MCG1178, multidrug resi 96.3 0.0064 2.2E-07 69.4 8.0 36 163-200 1050-1085(1284)
206 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.7E-08 55.5 3.4 25 175-199 4-28 (178)
207 4f4c_A Multidrug resistance pr 96.3 0.0039 1.3E-07 71.3 6.2 36 163-200 1096-1131(1321)
208 1rj9_A FTSY, signal recognitio 96.3 0.0029 1E-07 60.0 4.3 28 174-201 102-129 (304)
209 3kl4_A SRP54, signal recogniti 96.3 0.026 9.1E-07 56.0 11.3 28 174-201 97-124 (433)
210 2bdt_A BH3686; alpha-beta prot 96.2 0.0024 8.1E-08 56.0 3.3 22 175-196 3-24 (189)
211 2j41_A Guanylate kinase; GMP, 96.2 0.0025 8.6E-08 56.7 3.5 24 175-198 7-30 (207)
212 2eyu_A Twitching motility prot 96.2 0.003 1E-07 58.6 4.0 116 161-291 16-135 (261)
213 3nwj_A ATSK2; P loop, shikimat 96.2 0.0027 9.2E-08 58.4 3.6 41 157-199 30-73 (250)
214 2i3b_A HCR-ntpase, human cance 96.2 0.0023 7.7E-08 56.2 3.0 25 175-199 2-26 (189)
215 1odf_A YGR205W, hypothetical 3 96.2 0.005 1.7E-07 58.0 5.5 29 172-200 29-57 (290)
216 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0033 1.1E-07 63.9 4.5 44 155-200 24-67 (500)
217 1knq_A Gluconate kinase; ALFA/ 96.2 0.0029 1E-07 54.6 3.5 24 175-198 9-32 (175)
218 3lw7_A Adenylate kinase relate 96.2 0.0028 9.5E-08 54.6 3.3 20 175-194 2-21 (179)
219 3ney_A 55 kDa erythrocyte memb 96.1 0.0034 1.2E-07 55.2 3.8 26 174-199 19-44 (197)
220 3dm5_A SRP54, signal recogniti 96.1 0.032 1.1E-06 55.4 11.2 28 174-201 100-127 (443)
221 2bbw_A Adenylate kinase 4, AK4 96.1 0.003 1E-07 58.0 3.6 26 174-199 27-52 (246)
222 2ihy_A ABC transporter, ATP-bi 96.1 0.002 6.8E-08 60.4 2.3 31 168-200 43-73 (279)
223 3t61_A Gluconokinase; PSI-biol 96.1 0.0027 9.2E-08 56.4 3.0 25 175-199 19-43 (202)
224 3bgw_A DNAB-like replicative h 96.1 0.032 1.1E-06 55.9 11.1 60 161-226 186-245 (444)
225 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0052 1.8E-07 59.0 5.0 38 163-200 13-50 (359)
226 4f4c_A Multidrug resistance pr 96.1 0.0097 3.3E-07 68.1 8.2 26 175-200 445-470 (1321)
227 3trf_A Shikimate kinase, SK; a 96.1 0.0035 1.2E-07 54.7 3.6 25 175-199 6-30 (185)
228 2yvu_A Probable adenylyl-sulfa 96.1 0.0036 1.2E-07 54.7 3.6 28 174-201 13-40 (186)
229 2hf9_A Probable hydrogenase ni 96.0 0.0066 2.3E-07 54.7 5.4 41 160-200 24-64 (226)
230 1cke_A CK, MSSA, protein (cyti 96.0 0.0036 1.2E-07 56.6 3.5 25 175-199 6-30 (227)
231 3b9q_A Chloroplast SRP recepto 96.0 0.0038 1.3E-07 59.2 3.8 27 175-201 101-127 (302)
232 2b8t_A Thymidine kinase; deoxy 96.0 0.004 1.4E-07 56.0 3.7 108 175-289 13-126 (223)
233 1ly1_A Polynucleotide kinase; 96.0 0.0036 1.2E-07 54.2 3.4 22 175-196 3-24 (181)
234 1sq5_A Pantothenate kinase; P- 96.0 0.0068 2.3E-07 57.7 5.4 27 173-199 79-105 (308)
235 1nks_A Adenylate kinase; therm 96.0 0.004 1.4E-07 54.6 3.5 26 175-200 2-27 (194)
236 4a1f_A DNAB helicase, replicat 96.0 0.032 1.1E-06 53.5 10.0 61 161-227 35-95 (338)
237 3pih_A Uvrabc system protein A 96.0 0.028 9.6E-07 61.2 10.7 48 255-304 826-881 (916)
238 2qor_A Guanylate kinase; phosp 95.9 0.0035 1.2E-07 55.8 3.0 25 175-199 13-37 (204)
239 2if2_A Dephospho-COA kinase; a 95.9 0.0039 1.3E-07 55.3 3.3 22 175-196 2-23 (204)
240 3lnc_A Guanylate kinase, GMP k 95.9 0.0024 8.2E-08 58.1 1.9 24 175-198 28-52 (231)
241 1ex7_A Guanylate kinase; subst 95.9 0.0035 1.2E-07 54.7 2.8 26 175-200 2-27 (186)
242 2ze6_A Isopentenyl transferase 95.9 0.0042 1.4E-07 57.4 3.5 25 175-199 2-26 (253)
243 1kht_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 54.2 3.6 26 175-200 4-29 (192)
244 2bjv_A PSP operon transcriptio 95.9 0.0055 1.9E-07 56.9 4.3 48 152-199 5-54 (265)
245 2f1r_A Molybdopterin-guanine d 95.9 0.0033 1.1E-07 54.1 2.6 27 175-201 3-29 (171)
246 2rhm_A Putative kinase; P-loop 95.9 0.0049 1.7E-07 54.0 3.7 25 175-199 6-30 (193)
247 2r6a_A DNAB helicase, replicat 95.9 0.038 1.3E-06 55.7 10.7 60 161-225 192-251 (454)
248 1via_A Shikimate kinase; struc 95.9 0.004 1.4E-07 53.8 2.9 25 175-199 5-29 (175)
249 2jaq_A Deoxyguanosine kinase; 95.9 0.0047 1.6E-07 54.7 3.5 24 176-199 2-25 (205)
250 1jjv_A Dephospho-COA kinase; P 95.8 0.0042 1.5E-07 55.2 3.2 22 175-196 3-24 (206)
251 2wsm_A Hydrogenase expression/ 95.8 0.0066 2.3E-07 54.5 4.5 41 159-199 15-55 (221)
252 2gza_A Type IV secretion syste 95.8 0.0051 1.7E-07 60.0 3.8 36 163-200 166-201 (361)
253 2c95_A Adenylate kinase 1; tra 95.8 0.0075 2.6E-07 53.0 4.6 25 175-199 10-34 (196)
254 4e22_A Cytidylate kinase; P-lo 95.8 0.0051 1.7E-07 56.8 3.5 25 175-199 28-52 (252)
255 3cm0_A Adenylate kinase; ATP-b 95.8 0.0057 1.9E-07 53.3 3.7 25 175-199 5-29 (186)
256 1ls1_A Signal recognition part 95.8 0.026 9E-07 53.2 8.4 85 175-264 99-189 (295)
257 2xxa_A Signal recognition part 95.8 0.083 2.8E-06 52.6 12.4 28 174-201 100-127 (433)
258 1zuh_A Shikimate kinase; alpha 95.8 0.0059 2E-07 52.3 3.6 26 174-199 7-32 (168)
259 2og2_A Putative signal recogni 95.8 0.0055 1.9E-07 59.4 3.8 27 175-201 158-184 (359)
260 2ck3_D ATP synthase subunit be 95.7 0.078 2.7E-06 52.8 11.9 94 173-267 152-265 (482)
261 1iy2_A ATP-dependent metallopr 95.7 0.012 4.2E-07 55.0 6.0 24 176-199 75-98 (278)
262 3iij_A Coilin-interacting nucl 95.7 0.0048 1.7E-07 53.5 3.0 25 175-199 12-36 (180)
263 1tq4_A IIGP1, interferon-induc 95.7 0.0081 2.8E-07 59.4 4.9 25 175-199 70-94 (413)
264 3llm_A ATP-dependent RNA helic 95.7 0.019 6.5E-07 52.2 7.1 33 163-197 67-99 (235)
265 2qm8_A GTPase/ATPase; G protei 95.7 0.0064 2.2E-07 58.7 3.9 40 160-201 43-82 (337)
266 1y63_A LMAJ004144AAA protein; 95.7 0.007 2.4E-07 52.8 3.8 24 174-197 10-33 (184)
267 2obl_A ESCN; ATPase, hydrolase 95.7 0.0074 2.5E-07 58.3 4.3 39 159-200 59-97 (347)
268 2qt1_A Nicotinamide riboside k 95.7 0.0062 2.1E-07 54.2 3.5 24 175-198 22-45 (207)
269 1tev_A UMP-CMP kinase; ploop, 95.7 0.0064 2.2E-07 53.3 3.6 25 175-199 4-28 (196)
270 3hws_A ATP-dependent CLP prote 95.6 0.01 3.5E-07 58.0 5.2 45 155-199 17-76 (363)
271 2bwj_A Adenylate kinase 5; pho 95.6 0.0067 2.3E-07 53.4 3.6 25 175-199 13-37 (199)
272 3sop_A Neuronal-specific septi 95.6 0.0062 2.1E-07 56.7 3.4 25 176-200 4-28 (270)
273 1xjc_A MOBB protein homolog; s 95.6 0.011 3.6E-07 50.6 4.6 28 174-201 4-31 (169)
274 2iyv_A Shikimate kinase, SK; t 95.6 0.0053 1.8E-07 53.5 2.7 25 175-199 3-27 (184)
275 2plr_A DTMP kinase, probable t 95.6 0.0074 2.5E-07 53.7 3.8 27 175-201 5-31 (213)
276 1gvn_B Zeta; postsegregational 95.6 0.013 4.3E-07 55.2 5.4 25 174-198 33-57 (287)
277 2j37_W Signal recognition part 95.6 0.11 3.7E-06 52.7 12.6 28 174-201 101-128 (504)
278 1ukz_A Uridylate kinase; trans 95.6 0.0078 2.7E-07 53.3 3.8 26 174-199 15-40 (203)
279 1j8m_F SRP54, signal recogniti 95.6 0.071 2.4E-06 50.2 10.5 88 174-265 98-190 (297)
280 3umf_A Adenylate kinase; rossm 95.6 0.0077 2.6E-07 54.0 3.6 26 174-199 29-54 (217)
281 2qag_B Septin-6, protein NEDD5 95.5 0.0057 2E-07 60.5 3.0 34 162-197 30-65 (427)
282 1e6c_A Shikimate kinase; phosp 95.5 0.0064 2.2E-07 52.2 3.0 25 175-199 3-27 (173)
283 1uf9_A TT1252 protein; P-loop, 95.5 0.008 2.7E-07 53.1 3.6 24 174-197 8-31 (203)
284 2yhs_A FTSY, cell division pro 95.5 0.0088 3E-07 60.1 4.2 28 174-201 293-320 (503)
285 2q6t_A DNAB replication FORK h 95.5 0.048 1.6E-06 54.7 9.7 61 162-227 190-250 (444)
286 1svm_A Large T antigen; AAA+ f 95.5 0.0093 3.2E-07 58.2 4.3 24 175-198 170-193 (377)
287 2wwf_A Thymidilate kinase, put 95.5 0.0088 3E-07 53.3 3.8 31 175-206 11-41 (212)
288 1qf9_A UMP/CMP kinase, protein 95.5 0.0084 2.9E-07 52.4 3.6 25 175-199 7-31 (194)
289 2vli_A Antibiotic resistance p 95.5 0.0061 2.1E-07 52.9 2.6 25 175-199 6-30 (183)
290 2cdn_A Adenylate kinase; phosp 95.5 0.0096 3.3E-07 52.6 3.9 26 174-199 20-45 (201)
291 2pt5_A Shikimate kinase, SK; a 95.4 0.0088 3E-07 51.1 3.5 24 176-199 2-25 (168)
292 3tlx_A Adenylate kinase 2; str 95.4 0.017 5.7E-07 52.9 5.6 27 173-199 28-54 (243)
293 3fb4_A Adenylate kinase; psych 95.4 0.0087 3E-07 53.6 3.5 24 176-199 2-25 (216)
294 2pbr_A DTMP kinase, thymidylat 95.4 0.0088 3E-07 52.4 3.5 25 176-200 2-26 (195)
295 2p5t_B PEZT; postsegregational 95.4 0.013 4.3E-07 54.1 4.7 26 174-199 32-57 (253)
296 2pez_A Bifunctional 3'-phospho 95.4 0.0098 3.3E-07 51.5 3.7 26 175-200 6-31 (179)
297 1nn5_A Similar to deoxythymidy 95.4 0.0097 3.3E-07 53.1 3.8 27 175-201 10-36 (215)
298 2z0h_A DTMP kinase, thymidylat 95.4 0.0092 3.1E-07 52.4 3.5 25 176-200 2-26 (197)
299 1aky_A Adenylate kinase; ATP:A 95.4 0.0096 3.3E-07 53.5 3.7 25 175-199 5-29 (220)
300 1gtv_A TMK, thymidylate kinase 95.4 0.005 1.7E-07 55.0 1.8 25 176-200 2-26 (214)
301 1oix_A RAS-related protein RAB 95.4 0.0087 3E-07 52.5 3.3 25 175-199 30-54 (191)
302 1uj2_A Uridine-cytidine kinase 95.4 0.0097 3.3E-07 54.8 3.8 27 173-199 21-47 (252)
303 1np6_A Molybdopterin-guanine d 95.4 0.017 5.9E-07 49.7 5.0 27 174-200 6-32 (174)
304 2dpy_A FLII, flagellum-specifi 95.3 0.013 4.4E-07 58.6 4.8 39 159-200 145-183 (438)
305 1fx0_B ATP synthase beta chain 95.3 0.053 1.8E-06 54.2 9.0 95 172-267 163-278 (498)
306 3dl0_A Adenylate kinase; phosp 95.3 0.0096 3.3E-07 53.3 3.4 24 176-199 2-25 (216)
307 3cmu_A Protein RECA, recombina 95.3 0.029 9.8E-07 65.6 7.8 82 175-265 1428-1515(2050)
308 1zd8_A GTP:AMP phosphotransfer 95.2 0.01 3.5E-07 53.7 3.4 25 175-199 8-32 (227)
309 2v54_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 52.5 3.4 24 175-198 5-28 (204)
310 1m7g_A Adenylylsulfate kinase; 95.2 0.015 5.1E-07 51.9 4.4 25 175-199 26-50 (211)
311 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.01 3.5E-07 59.7 3.6 34 165-200 131-164 (460)
312 2grj_A Dephospho-COA kinase; T 95.2 0.011 3.9E-07 51.8 3.5 25 174-198 12-36 (192)
313 2ffh_A Protein (FFH); SRP54, s 95.2 0.12 4.2E-06 51.1 11.2 28 174-201 98-125 (425)
314 3r20_A Cytidylate kinase; stru 95.2 0.012 4E-07 53.4 3.5 25 175-199 10-34 (233)
315 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.012 4E-07 54.6 3.6 26 175-200 5-30 (260)
316 3vr4_D V-type sodium ATPase su 95.2 0.03 1E-06 55.4 6.7 94 174-267 151-260 (465)
317 1zak_A Adenylate kinase; ATP:A 95.2 0.01 3.5E-07 53.4 3.2 25 175-199 6-30 (222)
318 2f9l_A RAB11B, member RAS onco 95.2 0.011 3.8E-07 52.1 3.3 24 175-198 6-29 (199)
319 1tue_A Replication protein E1; 95.2 0.021 7.3E-07 50.1 5.0 40 161-200 44-84 (212)
320 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.2E-07 52.2 3.5 24 176-199 2-25 (206)
321 2oap_1 GSPE-2, type II secreti 95.1 0.017 6E-07 58.8 5.0 39 160-200 248-286 (511)
322 3kta_A Chromosome segregation 95.1 0.012 4E-07 51.1 3.2 25 175-199 27-51 (182)
323 1lw7_A Transcriptional regulat 95.0 0.012 4.3E-07 57.4 3.6 27 175-201 171-197 (365)
324 3ake_A Cytidylate kinase; CMP 95.0 0.015 5E-07 51.6 3.6 25 175-199 3-27 (208)
325 1um8_A ATP-dependent CLP prote 95.0 0.023 8E-07 55.7 5.4 25 175-199 73-97 (376)
326 2vp4_A Deoxynucleoside kinase; 94.9 0.0096 3.3E-07 54.0 2.3 24 174-197 20-43 (230)
327 3l0o_A Transcription terminati 94.9 0.015 5.1E-07 56.2 3.6 50 165-215 165-216 (427)
328 1e4v_A Adenylate kinase; trans 94.9 0.016 5.3E-07 51.9 3.5 23 176-198 2-24 (214)
329 2xau_A PRE-mRNA-splicing facto 94.9 0.18 6.1E-06 54.3 12.3 33 163-197 100-132 (773)
330 2xb4_A Adenylate kinase; ATP-b 94.9 0.015 5.3E-07 52.3 3.5 24 176-199 2-25 (223)
331 1vht_A Dephospho-COA kinase; s 94.9 0.015 5E-07 52.2 3.3 22 175-196 5-26 (218)
332 3cmw_A Protein RECA, recombina 94.9 0.048 1.6E-06 63.0 8.1 84 175-267 733-822 (1706)
333 2wji_A Ferrous iron transport 94.8 0.014 4.9E-07 49.6 3.0 23 175-197 4-26 (165)
334 3be4_A Adenylate kinase; malar 94.8 0.017 5.8E-07 51.8 3.5 25 175-199 6-30 (217)
335 4eaq_A DTMP kinase, thymidylat 94.8 0.029 1E-06 50.7 5.1 26 175-200 27-52 (229)
336 2ewv_A Twitching motility prot 94.8 0.019 6.4E-07 56.2 4.0 104 175-291 137-246 (372)
337 3d3q_A TRNA delta(2)-isopenten 94.8 0.017 5.7E-07 55.3 3.5 25 175-199 8-32 (340)
338 3gqb_B V-type ATP synthase bet 94.8 0.035 1.2E-06 55.0 5.8 95 173-267 146-263 (464)
339 1zu4_A FTSY; GTPase, signal re 94.7 0.021 7.3E-07 54.4 4.2 27 175-201 106-132 (320)
340 1nij_A Hypothetical protein YJ 94.7 0.014 4.9E-07 55.7 2.9 25 174-198 4-28 (318)
341 3exa_A TRNA delta(2)-isopenten 94.6 0.019 6.5E-07 54.1 3.5 25 175-199 4-28 (322)
342 3crm_A TRNA delta(2)-isopenten 94.6 0.018 6.3E-07 54.6 3.4 25 175-199 6-30 (323)
343 2rcn_A Probable GTPase ENGC; Y 94.6 0.027 9.1E-07 54.4 4.5 25 175-199 216-240 (358)
344 2zej_A Dardarin, leucine-rich 94.6 0.015 5.3E-07 50.4 2.6 23 175-197 3-25 (184)
345 1p9r_A General secretion pathw 94.6 0.03 1E-06 55.5 5.0 27 174-200 167-193 (418)
346 3lv8_A DTMP kinase, thymidylat 94.6 0.057 1.9E-06 49.0 6.4 30 175-205 28-57 (236)
347 2f6r_A COA synthase, bifunctio 94.6 0.02 6.9E-07 53.6 3.5 23 174-196 75-97 (281)
348 1a7j_A Phosphoribulokinase; tr 94.6 0.013 4.4E-07 55.2 2.2 26 174-199 5-30 (290)
349 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.2E-07 51.8 3.5 25 175-199 17-41 (233)
350 3upu_A ATP-dependent DNA helic 94.5 0.065 2.2E-06 54.0 7.5 44 157-201 29-72 (459)
351 2yv5_A YJEQ protein; hydrolase 94.5 0.03 1E-06 53.1 4.6 33 163-199 157-189 (302)
352 3fwy_A Light-independent proto 94.5 0.05 1.7E-06 51.7 6.1 41 172-214 46-86 (314)
353 3a8t_A Adenylate isopentenyltr 94.5 0.019 6.6E-07 54.7 3.2 25 175-199 41-65 (339)
354 2c61_A A-type ATP synthase non 94.5 0.035 1.2E-06 55.2 5.2 94 173-266 151-260 (469)
355 1q57_A DNA primase/helicase; d 94.5 0.11 3.9E-06 52.9 9.2 50 175-227 243-292 (503)
356 3p32_A Probable GTPase RV1496/ 94.4 0.063 2.1E-06 52.1 6.9 39 163-201 66-106 (355)
357 2qe7_A ATP synthase subunit al 94.4 0.1 3.5E-06 52.3 8.4 91 172-267 160-266 (502)
358 3foz_A TRNA delta(2)-isopenten 94.4 0.022 7.5E-07 53.5 3.4 26 174-199 10-35 (316)
359 1q3t_A Cytidylate kinase; nucl 94.4 0.025 8.6E-07 51.4 3.7 26 174-199 16-41 (236)
360 3cr8_A Sulfate adenylyltranfer 94.4 0.037 1.3E-06 56.9 5.3 27 175-201 370-396 (552)
361 1f2t_A RAD50 ABC-ATPase; DNA d 94.4 0.023 7.9E-07 47.5 3.2 24 175-198 24-47 (149)
362 2ck3_A ATP synthase subunit al 94.4 0.15 5E-06 51.2 9.4 95 172-267 160-274 (510)
363 2wjg_A FEOB, ferrous iron tran 94.4 0.022 7.5E-07 49.4 3.2 23 175-197 8-30 (188)
364 4tmk_A Protein (thymidylate ki 94.4 0.073 2.5E-06 47.4 6.6 27 175-201 4-30 (213)
365 3ld9_A DTMP kinase, thymidylat 94.4 0.055 1.9E-06 48.5 5.8 29 172-200 19-47 (223)
366 2p67_A LAO/AO transport system 94.3 0.032 1.1E-06 53.9 4.5 30 172-201 54-83 (341)
367 3euj_A Chromosome partition pr 94.3 0.023 7.9E-07 57.1 3.5 26 175-200 30-55 (483)
368 2www_A Methylmalonic aciduria 94.3 0.053 1.8E-06 52.5 5.9 28 174-201 74-101 (349)
369 2dyk_A GTP-binding protein; GT 94.3 0.027 9.1E-07 47.3 3.4 24 175-198 2-25 (161)
370 1g41_A Heat shock protein HSLU 94.2 0.032 1.1E-06 55.5 4.3 46 155-200 17-76 (444)
371 2r9v_A ATP synthase subunit al 94.2 0.095 3.2E-06 52.5 7.6 91 172-267 173-279 (515)
372 4gzl_A RAS-related C3 botulinu 94.2 0.026 9E-07 49.9 3.4 38 161-198 17-54 (204)
373 1u0l_A Probable GTPase ENGC; p 94.2 0.032 1.1E-06 52.8 4.0 26 175-200 170-195 (301)
374 3cmu_A Protein RECA, recombina 94.2 0.1 3.5E-06 61.1 8.8 83 175-266 384-472 (2050)
375 4edh_A DTMP kinase, thymidylat 94.1 0.084 2.9E-06 47.0 6.5 27 175-201 7-33 (213)
376 3oaa_A ATP synthase subunit al 94.1 0.3 1E-05 48.8 10.9 91 172-267 160-266 (513)
377 2gj8_A MNME, tRNA modification 94.1 0.028 9.4E-07 48.2 3.2 24 175-198 5-28 (172)
378 2qmh_A HPR kinase/phosphorylas 94.0 0.026 8.9E-07 49.3 2.8 25 175-199 35-59 (205)
379 1ltq_A Polynucleotide kinase; 94.0 0.029 9.8E-07 53.1 3.4 23 175-197 3-25 (301)
380 3end_A Light-independent proto 94.0 0.075 2.6E-06 50.3 6.3 43 171-215 38-80 (307)
381 3zvl_A Bifunctional polynucleo 93.9 0.028 9.6E-07 55.9 3.2 26 173-198 257-282 (416)
382 1pui_A ENGB, probable GTP-bind 93.9 0.014 4.8E-07 51.8 0.9 25 174-198 26-50 (210)
383 2ce2_X GTPase HRAS; signaling 93.8 0.036 1.2E-06 46.6 3.3 23 176-198 5-27 (166)
384 2qnr_A Septin-2, protein NEDD5 93.8 0.024 8.1E-07 53.7 2.3 22 176-197 20-41 (301)
385 1z2a_A RAS-related protein RAB 93.8 0.037 1.3E-06 46.7 3.3 24 175-198 6-29 (168)
386 1zj6_A ADP-ribosylation factor 93.7 0.068 2.3E-06 46.2 5.0 33 164-197 7-39 (187)
387 3mfy_A V-type ATP synthase alp 93.7 0.22 7.4E-06 50.4 9.0 90 173-267 226-336 (588)
388 2ged_A SR-beta, signal recogni 93.7 0.038 1.3E-06 48.1 3.3 25 174-198 48-72 (193)
389 2ocp_A DGK, deoxyguanosine kin 93.6 0.04 1.4E-06 50.2 3.5 25 175-199 3-27 (241)
390 2r8r_A Sensor protein; KDPD, P 93.6 0.11 3.7E-06 46.5 6.1 38 175-214 7-44 (228)
391 3eph_A TRNA isopentenyltransfe 93.6 0.039 1.3E-06 53.9 3.5 25 175-199 3-27 (409)
392 1yrb_A ATP(GTP)binding protein 93.6 0.059 2E-06 49.6 4.7 26 174-199 14-39 (262)
393 3cmw_A Protein RECA, recombina 93.6 0.2 7E-06 57.9 9.8 84 175-267 384-473 (1706)
394 2nzj_A GTP-binding protein REM 93.6 0.037 1.3E-06 47.1 3.0 24 175-198 5-28 (175)
395 1fzq_A ADP-ribosylation factor 93.5 0.04 1.4E-06 47.6 3.2 25 173-197 15-39 (181)
396 1t9h_A YLOQ, probable GTPase E 93.5 0.019 6.4E-07 54.4 1.1 25 175-199 174-198 (307)
397 1u8z_A RAS-related protein RAL 93.5 0.04 1.4E-06 46.4 3.1 24 175-198 5-28 (168)
398 3hjn_A DTMP kinase, thymidylat 93.5 0.13 4.4E-06 45.2 6.5 26 176-201 2-27 (197)
399 1kao_A RAP2A; GTP-binding prot 93.5 0.04 1.4E-06 46.3 3.1 24 175-198 4-27 (167)
400 2lkc_A Translation initiation 93.5 0.049 1.7E-06 46.5 3.6 25 174-198 8-32 (178)
401 1r8s_A ADP-ribosylation factor 93.5 0.044 1.5E-06 46.1 3.2 23 176-198 2-24 (164)
402 1moz_A ARL1, ADP-ribosylation 93.4 0.044 1.5E-06 47.1 3.3 25 172-196 16-40 (183)
403 1c1y_A RAS-related protein RAP 93.4 0.043 1.5E-06 46.3 3.1 24 175-198 4-27 (167)
404 2erx_A GTP-binding protein DI- 93.4 0.04 1.4E-06 46.7 2.9 23 175-197 4-26 (172)
405 1z08_A RAS-related protein RAB 93.4 0.047 1.6E-06 46.2 3.3 24 175-198 7-30 (170)
406 3con_A GTPase NRAS; structural 93.4 0.046 1.6E-06 47.4 3.3 24 175-198 22-45 (190)
407 2orw_A Thymidine kinase; TMTK, 93.4 0.058 2E-06 46.9 3.9 27 175-201 4-30 (184)
408 1nrj_B SR-beta, signal recogni 93.4 0.051 1.8E-06 48.4 3.7 26 173-198 11-36 (218)
409 1ek0_A Protein (GTP-binding pr 93.4 0.044 1.5E-06 46.3 3.1 23 176-198 5-27 (170)
410 3q85_A GTP-binding protein REM 93.3 0.039 1.3E-06 46.7 2.8 22 175-196 3-24 (169)
411 3ihw_A Centg3; RAS, centaurin, 93.3 0.047 1.6E-06 47.3 3.3 24 175-198 21-44 (184)
412 1z0j_A RAB-22, RAS-related pro 93.3 0.044 1.5E-06 46.3 3.1 24 175-198 7-30 (170)
413 1m2o_B GTP-binding protein SAR 93.3 0.048 1.6E-06 47.5 3.3 23 175-197 24-46 (190)
414 1svi_A GTP-binding protein YSX 93.3 0.045 1.6E-06 47.6 3.2 26 173-198 22-47 (195)
415 4akg_A Glutathione S-transfera 93.3 0.38 1.3E-05 58.4 11.8 141 165-319 1260-1431(2695)
416 1g16_A RAS-related protein SEC 93.3 0.046 1.6E-06 46.2 3.1 24 175-198 4-27 (170)
417 1u0j_A DNA replication protein 93.3 0.11 3.8E-06 47.7 5.8 39 160-198 88-128 (267)
418 1m7b_A RND3/RHOE small GTP-bin 93.3 0.049 1.7E-06 47.0 3.3 24 175-198 8-31 (184)
419 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.046 1.6E-06 46.7 3.1 24 175-198 8-31 (177)
420 1ky3_A GTP-binding protein YPT 93.2 0.051 1.7E-06 46.5 3.3 25 174-198 8-32 (182)
421 2hxs_A RAB-26, RAS-related pro 93.2 0.049 1.7E-06 46.6 3.1 24 175-198 7-30 (178)
422 1g8f_A Sulfate adenylyltransfe 93.2 0.088 3E-06 53.4 5.4 44 157-200 376-421 (511)
423 3gmt_A Adenylate kinase; ssgci 93.2 0.055 1.9E-06 48.6 3.5 25 175-199 9-33 (230)
424 2v3c_C SRP54, signal recogniti 93.2 0.038 1.3E-06 55.1 2.6 28 174-201 99-126 (432)
425 2qag_C Septin-7; cell cycle, c 93.1 0.038 1.3E-06 54.7 2.6 24 176-199 33-56 (418)
426 3q72_A GTP-binding protein RAD 93.1 0.049 1.7E-06 45.9 3.0 23 175-197 3-25 (166)
427 3io3_A DEHA2D07832P; chaperone 93.1 0.12 4.1E-06 49.8 6.1 44 169-214 13-58 (348)
428 2fn4_A P23, RAS-related protei 93.1 0.054 1.8E-06 46.3 3.3 25 174-198 9-33 (181)
429 2cjw_A GTP-binding protein GEM 93.1 0.054 1.8E-06 47.3 3.3 23 175-197 7-29 (192)
430 3pqc_A Probable GTP-binding pr 93.1 0.057 1.9E-06 46.9 3.5 24 175-198 24-47 (195)
431 1r2q_A RAS-related protein RAB 93.1 0.051 1.7E-06 45.9 3.1 23 175-197 7-29 (170)
432 3iqw_A Tail-anchored protein t 93.0 0.13 4.6E-06 49.2 6.2 45 169-215 11-55 (334)
433 1upt_A ARL1, ADP-ribosylation 93.0 0.058 2E-06 45.7 3.3 24 175-198 8-31 (171)
434 2cxx_A Probable GTP-binding pr 92.9 0.05 1.7E-06 47.0 2.9 23 176-198 3-25 (190)
435 1ega_A Protein (GTP-binding pr 92.9 0.052 1.8E-06 51.3 3.1 25 174-198 8-32 (301)
436 3c5c_A RAS-like protein 12; GD 92.9 0.055 1.9E-06 47.0 3.1 24 175-198 22-45 (187)
437 3qks_A DNA double-strand break 92.9 0.057 2E-06 47.7 3.2 25 175-199 24-48 (203)
438 2h92_A Cytidylate kinase; ross 92.9 0.051 1.7E-06 48.5 2.9 25 175-199 4-28 (219)
439 4dsu_A GTPase KRAS, isoform 2B 92.9 0.056 1.9E-06 46.6 3.1 24 175-198 5-28 (189)
440 1z0f_A RAB14, member RAS oncog 92.9 0.062 2.1E-06 45.8 3.3 24 175-198 16-39 (179)
441 1fx0_A ATP synthase alpha chai 92.8 0.092 3.1E-06 52.6 4.9 89 174-267 163-267 (507)
442 2oil_A CATX-8, RAS-related pro 92.8 0.057 1.9E-06 47.0 3.1 24 175-198 26-49 (193)
443 2iwr_A Centaurin gamma 1; ANK 92.8 0.044 1.5E-06 46.9 2.3 24 175-198 8-31 (178)
444 3bc1_A RAS-related protein RAB 92.8 0.058 2E-06 46.7 3.1 24 175-198 12-35 (195)
445 3v9p_A DTMP kinase, thymidylat 92.8 0.056 1.9E-06 48.7 3.0 27 175-201 26-52 (227)
446 2y8e_A RAB-protein 6, GH09086P 92.8 0.064 2.2E-06 45.8 3.3 24 175-198 15-38 (179)
447 3t1o_A Gliding protein MGLA; G 92.8 0.06 2.1E-06 46.8 3.2 25 175-199 15-39 (198)
448 1f6b_A SAR1; gtpases, N-termin 92.8 0.041 1.4E-06 48.3 2.1 22 175-196 26-47 (198)
449 2bme_A RAB4A, RAS-related prot 92.8 0.064 2.2E-06 46.2 3.3 24 175-198 11-34 (186)
450 1p5z_B DCK, deoxycytidine kina 92.7 0.037 1.3E-06 51.2 1.8 26 174-199 24-49 (263)
451 3kkq_A RAS-related protein M-R 92.7 0.066 2.3E-06 46.0 3.3 24 175-198 19-42 (183)
452 3dz8_A RAS-related protein RAB 92.7 0.07 2.4E-06 46.4 3.5 24 175-198 24-47 (191)
453 3vr4_A V-type sodium ATPase ca 92.7 0.46 1.6E-05 48.2 9.7 39 173-215 231-269 (600)
454 3tw8_B RAS-related protein RAB 92.7 0.046 1.6E-06 46.8 2.2 25 174-198 9-33 (181)
455 2zts_A Putative uncharacterize 92.7 0.085 2.9E-06 48.0 4.2 48 175-225 31-78 (251)
456 3cbq_A GTP-binding protein REM 92.6 0.052 1.8E-06 47.6 2.5 23 174-196 23-45 (195)
457 2a9k_A RAS-related protein RAL 92.6 0.064 2.2E-06 46.1 3.1 24 175-198 19-42 (187)
458 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.064 2.2E-06 46.1 3.1 24 175-198 6-29 (186)
459 3t5g_A GTP-binding protein RHE 92.6 0.069 2.4E-06 45.8 3.3 25 174-198 6-30 (181)
460 2g6b_A RAS-related protein RAB 92.6 0.064 2.2E-06 45.9 3.1 24 175-198 11-34 (180)
461 3lxx_A GTPase IMAP family memb 92.6 0.063 2.2E-06 48.7 3.2 27 173-199 28-54 (239)
462 1qhl_A Protein (cell division 92.6 0.012 4.3E-07 53.0 -1.6 27 175-201 28-54 (227)
463 3bwd_D RAC-like GTP-binding pr 92.6 0.065 2.2E-06 45.9 3.1 23 175-197 9-31 (182)
464 3fdi_A Uncharacterized protein 92.6 0.075 2.6E-06 46.9 3.5 26 175-200 7-32 (201)
465 2ew1_A RAS-related protein RAB 92.6 0.07 2.4E-06 47.0 3.3 24 175-198 27-50 (201)
466 2efe_B Small GTP-binding prote 92.5 0.072 2.4E-06 45.6 3.3 24 175-198 13-36 (181)
467 1mky_A Probable GTP-binding pr 92.5 0.11 3.9E-06 51.9 5.2 42 157-198 152-204 (439)
468 2bov_A RAla, RAS-related prote 92.5 0.066 2.3E-06 47.0 3.1 25 174-198 14-38 (206)
469 2atv_A RERG, RAS-like estrogen 92.5 0.066 2.3E-06 46.7 3.1 25 174-198 28-52 (196)
470 1gwn_A RHO-related GTP-binding 92.5 0.073 2.5E-06 47.0 3.3 24 175-198 29-52 (205)
471 3qkt_A DNA double-strand break 92.5 0.069 2.4E-06 51.4 3.4 24 175-198 24-47 (339)
472 1vg8_A RAS-related protein RAB 92.5 0.073 2.5E-06 46.8 3.3 25 174-198 8-32 (207)
473 3k53_A Ferrous iron transport 92.4 0.065 2.2E-06 49.8 3.1 24 175-198 4-27 (271)
474 1zd9_A ADP-ribosylation factor 92.4 0.07 2.4E-06 46.3 3.1 24 175-198 23-46 (188)
475 2fg5_A RAB-22B, RAS-related pr 92.4 0.075 2.5E-06 46.3 3.3 24 175-198 24-47 (192)
476 2fh5_B SR-beta, signal recogni 92.4 0.074 2.5E-06 47.1 3.3 24 175-198 8-31 (214)
477 3clv_A RAB5 protein, putative; 92.4 0.075 2.6E-06 46.4 3.3 24 175-198 8-31 (208)
478 3oes_A GTPase rhebl1; small GT 92.4 0.075 2.6E-06 46.6 3.3 25 174-198 24-48 (201)
479 3kjh_A CO dehydrogenase/acetyl 92.4 0.16 5.5E-06 46.1 5.7 41 176-218 2-42 (254)
480 3geh_A MNME, tRNA modification 92.4 1.1 3.8E-05 44.8 12.2 24 175-198 225-248 (462)
481 2gf9_A RAS-related protein RAB 92.4 0.071 2.4E-06 46.2 3.1 24 175-198 23-46 (189)
482 1cp2_A CP2, nitrogenase iron p 92.4 0.16 5.4E-06 46.9 5.6 38 175-214 2-39 (269)
483 3tqf_A HPR(Ser) kinase; transf 92.4 0.074 2.5E-06 45.2 2.9 23 175-197 17-39 (181)
484 2a5j_A RAS-related protein RAB 92.3 0.073 2.5E-06 46.2 3.1 24 175-198 22-45 (191)
485 3reg_A RHO-like small GTPase; 92.3 0.074 2.5E-06 46.3 3.1 24 175-198 24-47 (194)
486 4b3f_X DNA-binding protein smu 92.3 0.21 7E-06 52.8 7.0 61 160-225 193-253 (646)
487 2gf0_A GTP-binding protein DI- 92.3 0.073 2.5E-06 46.4 3.1 23 175-197 9-31 (199)
488 1zbd_A Rabphilin-3A; G protein 92.2 0.071 2.4E-06 46.8 2.9 24 175-198 9-32 (203)
489 2o5v_A DNA replication and rep 92.2 0.072 2.5E-06 51.6 3.2 24 175-198 27-50 (359)
490 2g3y_A GTP-binding protein GEM 92.2 0.079 2.7E-06 47.2 3.2 22 175-196 38-59 (211)
491 3tkl_A RAS-related protein RAB 92.2 0.084 2.9E-06 45.9 3.3 24 175-198 17-40 (196)
492 3tmk_A Thymidylate kinase; pho 92.2 0.093 3.2E-06 46.8 3.6 26 175-200 6-31 (216)
493 2o52_A RAS-related protein RAB 92.2 0.069 2.3E-06 46.9 2.7 24 175-198 26-49 (200)
494 1ksh_A ARF-like protein 2; sma 92.2 0.073 2.5E-06 45.9 2.9 26 173-198 17-42 (186)
495 1z06_A RAS-related protein RAB 92.1 0.086 2.9E-06 45.7 3.3 24 175-198 21-44 (189)
496 2bcg_Y Protein YP2, GTP-bindin 92.1 0.079 2.7E-06 46.6 3.1 24 175-198 9-32 (206)
497 3qf7_A RAD50; ABC-ATPase, ATPa 92.1 0.077 2.6E-06 51.7 3.2 24 175-198 24-47 (365)
498 3llu_A RAS-related GTP-binding 92.0 0.08 2.7E-06 46.3 3.0 24 175-198 21-44 (196)
499 2p5s_A RAS and EF-hand domain 92.0 0.089 3E-06 46.1 3.3 25 174-198 28-52 (199)
500 2q3h_A RAS homolog gene family 92.0 0.074 2.5E-06 46.6 2.8 24 175-198 21-44 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-47 Score=402.83 Aligned_cols=309 Identities=15% Similarity=0.135 Sum_probs=240.8
Q ss_pred cchhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHh--HhhhcCCCCeEEEEEEcCCC--ChHHHHHHHHHH
Q 044393 156 ETTKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGN--QLRQEKIFDEVGIATVSQDP--DIINVQSELVKW 228 (513)
Q Consensus 156 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 228 (513)
+||+.++++|..+|..+ ..++|+|+||||+||||||+.+|+ +.....+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999644 568999999999999999999998 45667789999999999885 788999999999
Q ss_pred hCCCCC--------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcC-Ccc
Q 044393 229 LGWELK--------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMG-CDT 299 (513)
Q Consensus 229 l~~~~~--------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~-~~~ 299 (513)
++.... ..+.......+.. .+.+.+|+||||||+|+...+ .+ ...+||+||||||+..++..++ ...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~--~L~~~kr~LlVLDdv~~~~~~-~~-~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICN--ALIDRPNTLFVFDDVVQEETI-RW-AQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHH--HHTTSTTEEEEEEEECCHHHH-HH-HHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HhcCcccccccccccccHHHHHHHHHH--HHcCCCcEEEEEECCCCchhh-cc-cccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 986521 1233445666766 555424999999999998755 22 2236999999999999998876 336
Q ss_pred eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcccCCcccc
Q 044393 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGI 379 (513)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~ 379 (513)
.|+|++|+.++||+||.+.++.....+.+.+++.+|+++|+|+||||+++|+.|+.+. |..+ +.+.......
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~---- 358 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR---- 358 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH----
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhcc----
Confidence 7999999999999999999875543467788999999999999999999999998764 4433 3333321100
Q ss_pred ccccccccchhhccccCCCCccchHHHh-----------hhcCCCCCCccCHHHHHHHHHhh--ccccccc-HHHHHHHH
Q 044393 380 DKDSLGVYGCLKFSYDYLNGEDSRSCFL-----------LCSLFPEDYKIDLEDLLGYAVGL--VWYQAES-IEKARSLL 445 (513)
Q Consensus 380 ~~~~~~v~~~l~~sy~~L~~~~~k~~~~-----------~~s~fp~~~~i~~~~Li~~w~a~--g~~~~~~-~~~~~~~~ 445 (513)
. ...+..+|.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+.... .....+.+
T Consensus 359 ~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 G--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp C--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 0 12688899999999998 9999999 999999999999 8899999 9997322 11122333
Q ss_pred HHHHHHHhHccccceeCC--CCcEEecHHHHHHHHHHhccc
Q 044393 446 RGTIKGLKDSSLLLDIDD--DGFVKMHDIVRDVAIWIGKVE 484 (513)
Q Consensus 446 ~~~l~~L~~~sll~~~~~--~~~~~mH~lv~~~a~~~~~~e 484 (513)
. +|++|+++||++.... ..+|+|||+||+||++++.++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 3 8999999999997653 357999999999999988654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-39 Score=371.76 Aligned_cols=317 Identities=25% Similarity=0.355 Sum_probs=251.5
Q ss_pred CccccccccchhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhh-cC-CCCeEEEEEEcCCCC--hHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EK-IFDEVGIATVSQDPD--IINV 221 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~ 221 (513)
+|.....|+||+.++++|...|. .++.++|+|+||||+||||||++++++... .. .++.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 44556679999999999999995 345689999999999999999999988643 23 457788999988543 3445
Q ss_pred HHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHhcc-CCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhh-
Q 044393 222 QSELVKWLGWELK-----EKDEEERADRLRLMFSESK-GRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDR- 294 (513)
Q Consensus 222 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~~~l~~-~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~- 294 (513)
+..++..+..... ..........++. .+.+ ++|+||||||+|+...+..+ .+|++||||||++.++..
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~LlvlDd~~~~~~~~~~---~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRV--LMLRKHPRSLLILDDVWDPWVLKAF---DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHH--HTSSSSCSCEEEEESCCCHHHHTTT---CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHH--HHhccCCCEEEEEecCCCHHHHHhh---cCCCEEEEEcCCHHHHHhh
Confidence 6677777765321 2345666777776 3433 24999999999998777765 459999999999988854
Q ss_pred cCCcceeecCC-CChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhccc
Q 044393 295 MGCDTRIKLDA-LDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKL 373 (513)
Q Consensus 295 ~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~ 373 (513)
......+++.+ |+.+++++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ ..|..+++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 44557899996 99999999999988643 334467799999999999999999999998765 479999999987654
Q ss_pred CCcccccc-ccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHH
Q 044393 374 DKIEGIDK-DSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGL 452 (513)
Q Consensus 374 ~~~~~~~~-~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L 452 (513)
..+..... ...++..+|.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.+++ +.+..+|++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----------~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----------EEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----------HHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----------HHHHHHHHHH
Confidence 44433222 123689999999999999 9999999999999999999999999997653 4456689999
Q ss_pred hHccccceeCCCC--cEEecHHHHHHHHHHhccc
Q 044393 453 KDSSLLLDIDDDG--FVKMHDIVRDVAIWIGKVE 484 (513)
Q Consensus 453 ~~~sll~~~~~~~--~~~mH~lv~~~a~~~~~~e 484 (513)
+++||++....++ +|+||++||+|++.++.++
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999998665333 5999999999999997654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4e-40 Score=350.57 Aligned_cols=284 Identities=19% Similarity=0.179 Sum_probs=224.7
Q ss_pred ccchhHHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCCCChHHHHHHHHHHhCCC
Q 044393 155 FETTKSACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQDPDIINVQSELVKWLGWE 232 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (513)
.+||+.+++.|..+|.. +..++|+|+||||+||||||+.++++.+...+|+. ++|+++++.++...++..+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999875 45689999999999999999999988766667986 99999999998888877777653221
Q ss_pred ---CC---C------CCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcCCcce
Q 044393 233 ---LK---E------KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTR 300 (513)
Q Consensus 233 ---~~---~------~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~~~~~ 300 (513)
.. . ...+.....++.++....++++||||||+|+...|..+. +||+||||||++.++..+.....
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~g~~v 286 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATT 286 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHHHHSS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcCCCeE
Confidence 10 0 012344556666443345699999999999988777653 69999999999988764433335
Q ss_pred eecC------CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC--ChHHHHHHHHHHhhcc
Q 044393 301 IKLD------ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR--NADEWNVALDKLQNAK 372 (513)
Q Consensus 301 ~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~--~~~~w~~~l~~l~~~~ 372 (513)
+.++ +|+.+||++||.+..+.. . .++..+ .|+|+||||.++|+.|+.+ +...|...
T Consensus 287 y~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------- 350 (1221)
T 1vt4_I 287 THISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------- 350 (1221)
T ss_dssp CEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------
T ss_pred EEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------
Confidence 6666 899999999999986532 1 233333 3999999999999999976 56777642
Q ss_pred cCCccccccccccccchhhccccCCCCccc-hHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Q 044393 373 LDKIEGIDKDSLGVYGCLKFSYDYLNGEDS-RSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKG 451 (513)
Q Consensus 373 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~ 451 (513)
. ...+..+|.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++| .+.+..+|++
T Consensus 351 --~-------~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~e 410 (1221)
T 1vt4_I 351 --N-------CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNK 410 (1221)
T ss_dssp --S-------CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHH
T ss_pred --C-------hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHH
Confidence 0 12688999999999999 88 99999999999999999999999999887 1235668999
Q ss_pred HhHccccceeCCCCcEEecHHHHHHH
Q 044393 452 LKDSSLLLDIDDDGFVKMHDIVRDVA 477 (513)
Q Consensus 452 L~~~sll~~~~~~~~~~mH~lv~~~a 477 (513)
|+++||++..+..++|+||||+++++
T Consensus 411 LvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 411 LHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999754557899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=324.42 Aligned_cols=312 Identities=25% Similarity=0.364 Sum_probs=236.2
Q ss_pred ccccccccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhh-cCCC-CeEEEEEEcCCCChHHHH--
Q 044393 149 PRFFSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EKIF-DEVGIATVSQDPDIINVQ-- 222 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~-- 222 (513)
|.....|+||+.+++.|...+.. ++.++|+|+||||+||||||..++++... ..+| +.++|++++... ...++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence 34456799999999999999963 45689999999999999999999987654 4568 589999998763 33333
Q ss_pred -HHHHHHhCCC-----CCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcC
Q 044393 223 -SELVKWLGWE-----LKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 223 -~~i~~~l~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~ 296 (513)
..++..++.. ....+.......+...+.-. .+++||||||+|+...+..+ .++++||||||+..++..+.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~LLVLDdv~~~~~l~~l---~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK-HPRSLLILDDVWDSWVLKAF---DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHT-CTTCEEEEEEECCHHHHHTT---CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccC-CCCeEEEEeCCCCHHHHHHh---cCCCeEEEECCCcHHHHhcC
Confidence 3344455521 12234455666666633222 27899999999987666544 34899999999998876543
Q ss_pred Ccceeec---CCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhccc
Q 044393 297 CDTRIKL---DALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKL 373 (513)
Q Consensus 297 ~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~ 373 (513)
...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||.++|++++.+. ..|..+++.+.....
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence 233443 5899999999999988742 222346789999999999999999999998763 369999998887543
Q ss_pred CCcccc-ccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHH
Q 044393 374 DKIEGI-DKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGL 452 (513)
Q Consensus 374 ~~~~~~-~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L 452 (513)
..+... .....++..++..||+.||+ +.|.||++||+||+++.|+.+.+..+|.+++ +.+..+|++|
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----------~~~~~~l~~L 418 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----------EEVEDILQEF 418 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----------HHHHHHHHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----------HHHHHHHHHH
Confidence 333221 11223688999999999998 8999999999999999999999999996542 2345689999
Q ss_pred hHccccceeCCC--CcEEecHHHHHHHHHHh
Q 044393 453 KDSSLLLDIDDD--GFVKMHDIVRDVAIWIG 481 (513)
Q Consensus 453 ~~~sll~~~~~~--~~~~mH~lv~~~a~~~~ 481 (513)
+++||++...++ .+|+||++||+|++...
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999999854322 37999999999999884
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.73 E-value=4.8e-16 Score=153.43 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=173.1
Q ss_pred ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC------ChHHHHHH
Q 044393 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP------DIINVQSE 224 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~ 224 (513)
....|+||+.+++.|..++..+ +++.|+|++|+|||||++.+++... .+|+.+.... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 3456889999999999999876 8999999999999999999987751 5566654332 45556666
Q ss_pred HHHHhCC-----------------CC--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------cccc---
Q 044393 225 LVKWLGW-----------------EL--KEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETV--- 273 (513)
Q Consensus 225 i~~~l~~-----------------~~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l--- 273 (513)
+.+.+.. .. ...........+.. .....++.+|||||++.... +..+
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELND--LGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHH--HHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHH--HHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6655432 00 01223333344433 22211389999999976432 1111
Q ss_pred ccCCCCcEEEEEeCchHHHhh----------c--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCC
Q 044393 274 GIPANCCKILLTTRLQQVCDR----------M--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKG 341 (513)
Q Consensus 274 ~~~~~~~~iivTtr~~~v~~~----------~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 341 (513)
....++.++|+|++....... + .....+++.+|+.+|+.+++...+....... ..+.+..|++.|+|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCC
Confidence 111247899999887643221 1 1124799999999999999987653211111 25678899999999
Q ss_pred CchHHHHHHHHhcC-CChHHH-HHHHHHHhhcccCCccccccccccccchhhccccCC---CCccchHHHhhhcCCCCCC
Q 044393 342 LPLAIKVVGSALTG-RNADEW-NVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYL---NGEDSRSCFLLCSLFPEDY 416 (513)
Q Consensus 342 ~PLai~~~~~~l~~-~~~~~w-~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~~k~~~~~~s~fp~~~ 416 (513)
+|+++..++..+.. .+...+ ....+... ..+...+..+ ++ ..+.++..+|. ..
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~l~~~~~-~~~~~l~~la~--g~- 295 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAK------------------GLIMGELEELRRRSP-RYVDILRAIAL--GY- 295 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHCH-HHHHHHHHHHT--TC-
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHH------------------HHHHHHHHHHHhCCh-hHHHHHHHHHh--CC-
Confidence 99999998876432 222211 11111110 0011111122 55 78899998887 22
Q ss_pred ccCHHHHHHHHHh-hcccccccHHHHHHHHHHHHHHHhHccccceeCCCCcEEe-cHHHHHHHH
Q 044393 417 KIDLEDLLGYAVG-LVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKM-HDIVRDVAI 478 (513)
Q Consensus 417 ~i~~~~Li~~w~a-~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~m-H~lv~~~a~ 478 (513)
.....+....-. .| .. .......+++.|.+.+||...+ +.|++ |++++++.+
T Consensus 296 -~~~~~l~~~~~~~~~---~~----~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 -NRWSLIRDYLAVKGT---KI----PEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp -CSHHHHHHHHHHTTC---CC----CHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred -CCHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 344444433211 10 00 1233456899999999997653 55654 889988764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=3.6e-15 Score=150.69 Aligned_cols=301 Identities=17% Similarity=0.133 Sum_probs=179.3
Q ss_pred ccccchhHHHHHHHHHH-h----c--CCccEEEE--EcCCCChHHHHHHHHHhHhhhc---CCCC-eEEEEEEcCCCChH
Q 044393 153 SSFETTKSACNQITEAL-K----K--GSTKMVGL--HGLGGVGKTTLAKFVGNQLRQE---KIFD-EVGIATVSQDPDII 219 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~ 219 (513)
..++||+.+++.|...+ . . +....+.| +|++|+|||||++.+++..... ..+. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56889999999998887 3 2 23467777 9999999999999999887542 1122 35677766777888
Q ss_pred HHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--------cccc---c--cC--C--CCc
Q 044393 220 NVQSELVKWLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD--------LETV---G--IP--A--NCC 280 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--------~~~l---~--~~--~--~~~ 280 (513)
.++..++..++...+ ..+.......+...+.. .+++++|||||++.... +..+ . .+ . .+.
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 999999999876543 22344555555553332 24899999999976321 2111 1 11 1 244
Q ss_pred EEEEEeCchHHHhhc--------C-CcceeecCCCChHhHHHHHHHhcCCC-CCCCchHHHHHHHHHHhC------CCch
Q 044393 281 KILLTTRLQQVCDRM--------G-CDTRIKLDALDQAEGLDLLREHAGID-VADTTLTDVSKRVADECK------GLPL 344 (513)
Q Consensus 281 ~iivTtr~~~v~~~~--------~-~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------G~PL 344 (513)
.+|+||+...+...+ . ....+.+.+|+.++++++|...+... .......+....|++.|+ |+|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 588888765432111 1 12339999999999999997654310 011122567889999999 9997
Q ss_pred HHHHHHHHhc------CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCC--
Q 044393 345 AIKVVGSALT------GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFP-- 413 (513)
Q Consensus 345 ai~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp-- 413 (513)
.+..+..... +. +...+..++..... ...+..++..||+ +.+.++..++.+.
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~----------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA----------------ASIQTHELEALSI-HELIILRLIAEATLG 323 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------------CCSSSSSCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----------------cchHHHHHHcCCH-HHHHHHHHHHHHHhc
Confidence 6655543221 11 22333333322100 1235567788998 8899988888653
Q ss_pred CCCccCHHHHHHHHHhh--cccccccHHHHHHHHHHHHHHHhHccccceeC----CCCcEEecHHH
Q 044393 414 EDYKIDLEDLLGYAVGL--VWYQAESIEKARSLLRGTIKGLKDSSLLLDID----DDGFVKMHDIV 473 (513)
Q Consensus 414 ~~~~i~~~~Li~~w~a~--g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~----~~~~~~mH~lv 473 (513)
.+..+....+...+... ........ ....+..+++.|.+.+||.... ..++|++|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNVKPR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCCCCC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 23356555555443211 11110000 1233456799999999997543 23445555443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=5.2e-15 Score=146.34 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=166.3
Q ss_pred cccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-----CChHHHHHHHH
Q 044393 152 FSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-----PDIINVQSELV 226 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 226 (513)
...|+||+.+++.|.. +.. +++.|+|++|+|||||++.+++.... ..+|+.+... .+....+..+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHH
Confidence 4568899999999999 765 69999999999999999999987642 2467776542 23344444443
Q ss_pred HHhC--------------C----CCC------------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----ccc
Q 044393 227 KWLG--------------W----ELK------------EKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----DLE 271 (513)
Q Consensus 227 ~~l~--------------~----~~~------------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~~~ 271 (513)
+.+. . ..+ ..........+. .... ++++|||||++... ++.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE---QASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH---HTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHH---hcCC-CCeEEEEECHHHhhccCchhHH
Confidence 3321 0 000 111222222222 2222 48999999997643 221
Q ss_pred cc----ccCCCCcEEEEEeCchHHHhh----------cC-C-cceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHH
Q 044393 272 TV----GIPANCCKILLTTRLQQVCDR----------MG-C-DTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKR 334 (513)
Q Consensus 272 ~l----~~~~~~~~iivTtr~~~v~~~----------~~-~-~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~ 334 (513)
.+ ....++.++|+|++....... +. . ...+.+.+|+.+++.+++...+.. ...... . ..
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HH
Confidence 11 111237899999997653221 11 1 257899999999999999876531 111122 1 78
Q ss_pred HHHHhCCCchHHHHHHHHhcC-CChHHHHH-HHHHHhhcccCCccccccccccccchhh-ccc--cCCCCccchHHHhhh
Q 044393 335 VADECKGLPLAIKVVGSALTG-RNADEWNV-ALDKLQNAKLDKIEGIDKDSLGVYGCLK-FSY--DYLNGEDSRSCFLLC 409 (513)
Q Consensus 335 i~~~~~G~PLai~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~~k~~~~~~ 409 (513)
|++.|+|+|+++..++..+.. .+...|.. +.+.... .+...+. +.+ ..||+ ..+..+..+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~l~~-~~~~~l~~l 299 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK--------------LILKEFENFLHGREIARK-RYLNIMRTL 299 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHHHHHTTCGGGHH-HHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH--------------HHHHHHHHHhhccccccH-HHHHHHHHH
Confidence 999999999999999877642 23222211 1111100 0111111 111 15777 889999999
Q ss_pred cCCCCCCccCHHHHHHHHH-hhcccccccHHHHHHHHHHHHHHHhHccccceeCCCCcEE-ecHHHHHHH
Q 044393 410 SLFPEDYKIDLEDLLGYAV-GLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVK-MHDIVRDVA 477 (513)
Q Consensus 410 s~fp~~~~i~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-mH~lv~~~a 477 (513)
|. +. +...+....- ..|. .. .......+++.|.+.+||...+ +.|+ .|++++++.
T Consensus 300 a~---g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred Hc---CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 98 21 4444432110 1110 00 1234456899999999997653 5676 589999874
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.49 E-value=1.9e-13 Score=110.38 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHH
Q 044393 3 ILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRA-IDIEKDVEKWLADVVKEM 81 (513)
Q Consensus 3 v~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~v~~Wl~~v~~~~ 81 (513)
+++++++|+++++.+++.. +.++++++++|+++|..|+++|.+|+ .+. ...+++++.|+++||+++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l-----------~~gv~~~i~~Lk~eL~~m~a~L~da~--~~~~~~~d~~vk~W~~~vrdla 68 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKL-----------HKGVKKNIEDLGKELESMNAALIKIG--EVPREQLDSQDKLWADEVRELS 68 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-----------HhchHHHHHHHHHHHHHHHHHHHHHH--HhccccCCHHHHHHHHHHHHHH
Confidence 6788999999999999865 47899999999999999999999998 432 357899999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 044393 82 ADVQTLKTKIAEKK 95 (513)
Q Consensus 82 ~d~ed~~d~~~~~~ 95 (513)
||+|||+|+|.+..
T Consensus 69 YD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 69 YVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997653
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.2e-12 Score=130.77 Aligned_cols=286 Identities=15% Similarity=0.101 Sum_probs=170.7
Q ss_pred ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCC-CCeEEEEEEcCCCChHHHHHHHHH
Q 044393 153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI-FDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
..++||+.+++.|..++.. +....+.|+|++|+|||||++.+++....... -...+|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999988863 44578999999999999999999998765421 234567776666677778888877
Q ss_pred HhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccc--c---CCCCcEEEEEeCchHHHhh
Q 044393 228 WLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVG--I---PANCCKILLTTRLQQVCDR 294 (513)
Q Consensus 228 ~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~--~---~~~~~~iivTtr~~~v~~~ 294 (513)
.++.... ..+.......+...+.. .+++.+|||||++...+ +..+. . ...+..+|+||+.......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 7765432 22344445555553332 23689999999966421 22221 1 2226778888887643222
Q ss_pred cC-------CcceeecCCCChHhHHHHHHHhcCCC-CCCCchHHHHHHHHHHhC---CCchHHHHHHHHh-c-----CC-
Q 044393 295 MG-------CDTRIKLDALDQAEGLDLLREHAGID-VADTTLTDVSKRVADECK---GLPLAIKVVGSAL-T-----GR- 356 (513)
Q Consensus 295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~---G~PLai~~~~~~l-~-----~~- 356 (513)
+. ....+.+.+++.++..+++...+... ....-..+....+++.++ |.|..+..+.... . +.
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 21 11579999999999999998765310 011223567788888888 9998444333222 1 11
Q ss_pred --ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcC-CCCC-CccCHHHHHHHH--Hhh
Q 044393 357 --NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSL-FPED-YKIDLEDLLGYA--VGL 430 (513)
Q Consensus 357 --~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~-fp~~-~~i~~~~Li~~w--~a~ 430 (513)
+.+.+..++..+.. ..+.-++..||+ ..+..+..++. +-.+ ..+....+.+.. +++
T Consensus 259 ~i~~~~v~~a~~~~~~-----------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 259 KVKEEYVYMAKEEIER-----------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp SCCHHHHHHHHHHHHH-----------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhh-----------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 44555555544321 124555677887 66666665552 2111 223343333221 111
Q ss_pred cc-cccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 431 VW-YQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 431 g~-~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
.. +... ....+..+++.|...|++...
T Consensus 321 ~~g~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLGVEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHTCCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCCCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 10 1111 123455689999999999753
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.1e-11 Score=123.98 Aligned_cols=284 Identities=13% Similarity=0.078 Sum_probs=177.1
Q ss_pred ccccchhHHHHHHHHHHhc----CCcc--EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 153 SSFETTKSACNQITEALKK----GSTK--MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
..++||+.+++.+..++.. +... .+.|+|++|+|||||++.+++...... -...++++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 4578999999999888854 2334 899999999999999999998876532 12456677677777888999999
Q ss_pred HHhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccc---c--CC---CCcEEEEEeCchHHHhh
Q 044393 227 KWLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVG---I--PA---NCCKILLTTRLQQVCDR 294 (513)
Q Consensus 227 ~~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~---~--~~---~~~~iivTtr~~~v~~~ 294 (513)
..++.... ..+.......+...+.. .+++.+|+|||++... .+..+. . .. .+..+|+||+...+...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 88876433 22345555555553333 2478999999997652 122221 1 11 36788888887644332
Q ss_pred cC-------CcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHh---------CCCchHHHHHHHHhc---
Q 044393 295 MG-------CDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADEC---------KGLPLAIKVVGSALT--- 354 (513)
Q Consensus 295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~G~PLai~~~~~~l~--- 354 (513)
+. ....+.+.+++.++..+++...+.. .....-.++....+++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 1136999999999999999887642 001122357788999999 798865544433221
Q ss_pred ---CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCC---CCCccCHHHHHH
Q 044393 355 ---GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFP---EDYKIDLEDLLG 425 (513)
Q Consensus 355 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp---~~~~i~~~~Li~ 425 (513)
+. +.+....+..... ...+.-.+..||+ +.+.++..++.+. .+..+....+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~-----------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL-----------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS-----------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh-----------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 11 2233333332211 1123445667887 7788777776543 221455566655
Q ss_pred HHHh----hcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 426 YAVG----LVWYQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 426 ~w~a----~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
.+-. .|. ..- ......++++.|...++|...
T Consensus 317 ~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 317 SYKIVCEEYGE-RPR----VHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTC-CCC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHcCC-CCC----CHHHHHHHHHHHHhCCCeEEe
Confidence 4422 111 111 123456689999999999864
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=8.2e-12 Score=124.70 Aligned_cols=280 Identities=13% Similarity=0.068 Sum_probs=170.2
Q ss_pred ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcC-----C-CCeEEEEEEcCCC-ChHHH
Q 044393 153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-----I-FDEVGIATVSQDP-DIINV 221 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~~ 221 (513)
..++||+.+++.+..++.. +..+.+.|+|++|+||||||+.+++...... . ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5578999999988877643 3457899999999999999999998874421 1 2345677776666 78888
Q ss_pred HHHHHHHh-CCCC--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------ccccccCCCCcEEEEEeCchHH
Q 044393 222 QSELVKWL-GWEL--KEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------LETVGIPANCCKILLTTRLQQV 291 (513)
Q Consensus 222 ~~~i~~~l-~~~~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------~~~l~~~~~~~~iivTtr~~~v 291 (513)
+..++..+ +... ...+.......+.. .+.. ++.+|||||++.... +..+.....+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKN--GTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHH--HHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHH--Hhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88888877 3222 12223444555554 4444 444999999965421 2222211257889999987532
Q ss_pred --------HhhcCCcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHhC---CCch-HHHHHHHHh--c-C
Q 044393 292 --------CDRMGCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADECK---GLPL-AIKVVGSAL--T-G 355 (513)
Q Consensus 292 --------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~~~~l--~-~ 355 (513)
...+ ...+.+.+++.++..++|...+.. -....-.++..+.+++.|+ |.|. ++..+-... . +
T Consensus 177 ~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 177 RDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1211 238999999999999999987531 0011122466788889998 9887 333333322 1 1
Q ss_pred ---CChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcc
Q 044393 356 ---RNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVW 432 (513)
Q Consensus 356 ---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~ 432 (513)
-+.+.+..++..... ..+..++..|++ +.+..+..++....+..+. .......-..|
T Consensus 255 ~~~i~~~~v~~~~~~~~~-----------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g- 314 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-----------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK- 314 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-----------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-
T ss_pred CCccCHHHHHHHHHHHhc-----------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-
Confidence 256667766665422 125566778887 7777776666511100111 01111111112
Q ss_pred cccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 433 YQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
.... ......++++.|...|++...
T Consensus 315 ~~~~----~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 315 QKPL----SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 1111 124456689999999999853
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.1e-11 Score=123.78 Aligned_cols=284 Identities=15% Similarity=0.084 Sum_probs=174.5
Q ss_pred ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChHHHHHH
Q 044393 153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
..++||+.+++.+..++.. +....+.|+|++|+||||||+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5578999999999998843 345789999999999999999999887542 11123567777777788889999
Q ss_pred HHHHhCCCCCC--CCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------ccccc-cC-----CCCcEEEEEeCch
Q 044393 225 LVKWLGWELKE--KDEEERADRLRLMFSESKGRKILIILDDVWKELD-------LETVG-IP-----ANCCKILLTTRLQ 289 (513)
Q Consensus 225 i~~~l~~~~~~--~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------~~~l~-~~-----~~~~~iivTtr~~ 289 (513)
++..++...+. .+.......+...+. ..+++.+|+|||++.... +..+. .. ..+..+|+||+..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLS-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHT-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99998764332 234454555555222 234789999999976432 11111 11 2366888888765
Q ss_pred HH--------HhhcCCcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHhC---CCchHH-HHHHHHhc--
Q 044393 290 QV--------CDRMGCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADECK---GLPLAI-KVVGSALT-- 354 (513)
Q Consensus 290 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---G~PLai-~~~~~~l~-- 354 (513)
.. ...+. ...+.+.+++.++..+++...+.. .....-.++..+.+++.++ |.|..+ ..+.....
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 22 22221 147999999999999999887531 0011112356778888888 999433 33222221
Q ss_pred ---CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhc-CCCCCCccCHHHHHHHH
Q 044393 355 ---GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCS-LFPEDYKIDLEDLLGYA 427 (513)
Q Consensus 355 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s-~fp~~~~i~~~~Li~~w 427 (513)
+. +.+.+..++..... ..+.-++..||+ +.+..+..++ ++.+...+....+.+..
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~~-----------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIER-----------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHHH-----------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHhh-----------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 11 45566666554322 124556778887 6666666554 44332345555444432
Q ss_pred Hh----hcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393 428 VG----LVWYQAESIEKARSLLRGTIKGLKDSSLLLDI 461 (513)
Q Consensus 428 ~a----~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 461 (513)
.. .| .... ....+..+++.|...|++...
T Consensus 319 ~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 11 12 1111 124456689999999999863
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=1.6e-11 Score=114.05 Aligned_cols=197 Identities=18% Similarity=0.155 Sum_probs=115.5
Q ss_pred ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
|..+..++|++..++.|..++..+. .+.+.|+|++|+|||||++.+++.......+... ....... ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhc
Confidence 4455678999999999999997764 3589999999999999999999877543211000 0000000 000000
Q ss_pred HhCC-----CCCC-CCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchHH-Hh
Q 044393 228 WLGW-----ELKE-KDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQV-CD 293 (513)
Q Consensus 228 ~l~~-----~~~~-~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~v-~~ 293 (513)
.... .... .........+..+. ....+++.+||+||++... .+..+ .....+..+|+||+.... ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0000 0000 01111111111100 0123478999999996632 22222 122337888888876432 11
Q ss_pred h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
. ......+.+.+++.++..+++...+..... ...++....|++.|+|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 122368999999999999999987743211 2225678899999999999888776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=5.7e-11 Score=108.68 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=114.9
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.|..+..++|++..++.+..++..+..+.+.|+|++|+|||+||+.+++.......-...+.+..+.......+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence 34556678899999999999998776556999999999999999999987643311122233333332222221111111
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cccc---c-cCCCCcEEEEEeCchHH-Hh-hcCCcc
Q 044393 228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LETV---G-IPANCCKILLTTRLQQV-CD-RMGCDT 299 (513)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~l---~-~~~~~~~iivTtr~~~v-~~-~~~~~~ 299 (513)
..... ....+++.+||+||++.... ...+ . ....+..+|+||+.... .. ......
T Consensus 92 ~~~~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 92 FARTA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHTSC-----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred Hhccc-----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 10000 11125789999999976421 1111 1 22337788888876431 11 112234
Q ss_pred eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
.+.+.+++.++..+++.+.+...... -..+....|++.++|+|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 79999999999999998876421111 225677889999999999655443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=9.1e-10 Score=106.93 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=114.5
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.|..+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++...........++++.+..... ....+++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence 34556778899999999999998876555999999999999999999988643211111233332222121 11122221
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchH-HHhh-cCCcc
Q 044393 228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQ-VCDR-MGCDT 299 (513)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~-v~~~-~~~~~ 299 (513)
.+.... . ....+++.++|+||++... ....+ ..+.+++.+|+||+... +... .....
T Consensus 95 ~~~~~~-------------~--~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 95 HFAQKK-------------L--HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHBC-------------C--CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcc-------------c--cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 110000 0 1113468999999997642 12222 12334778888887642 1111 12235
Q ss_pred eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH-HHHHHH
Q 044393 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA-IKVVGS 351 (513)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-i~~~~~ 351 (513)
.+.+.+++.++..+++...+...... -.++....|++.|+|.|.. +..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 89999999999999998866421111 2256778999999999954 444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=3.7e-09 Score=102.82 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=112.3
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW 228 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (513)
|..+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.... .....
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~----- 94 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-INVIR----- 94 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-HHTTH-----
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-hHHHH-----
Confidence 445566889999999999999888666799999999999999999998864321101122222221100 00001
Q ss_pred hCCCCCCCCHHHHHHHHHHHH---HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchHH-Hhhc-CC
Q 044393 229 LGWELKEKDEEERADRLRLMF---SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQV-CDRM-GC 297 (513)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~~---~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~v-~~~~-~~ 297 (513)
..+..+. ....+++.++|+||++... ....+ ..+..++++|+||....- ...+ ..
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 1111110 1222478899999997642 12222 122347788888876421 1111 11
Q ss_pred cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393 298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351 (513)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 351 (513)
...+.+.+++.++...++...+...... -..+....|++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2478999999999999998876432211 2256778899999999986554443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=4.5e-09 Score=102.11 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=106.3
Q ss_pred ccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQS 223 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (513)
|..+..++|++..+..+...+.. .....+.|+|++|+|||+||+.+++..... ..+++.+......++
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l-- 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDL-- 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHH--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHH--
Confidence 44566788999888888777742 233678999999999999999999876421 223332222111111
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccc---------------cCCCC
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVG---------------IPANC 279 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~---------------~~~~~ 279 (513)
...+. ... .+..+|+|||+..... ++... ...++
T Consensus 81 ------------------~~~l~---~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 ------------------AAILA---NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------------------HHHHT---TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------------------HHHHH---Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11111 101 2556888998865421 01000 01124
Q ss_pred cEEEEEeCchH-HHhhc--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393 280 CKILLTTRLQQ-VCDRM--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL 353 (513)
Q Consensus 280 ~~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 353 (513)
..+|.||.... +...+ .....+.+.+++.++...++...+...... -..+....+++.|+|+|..+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 56777776432 11111 112578999999999999998877532222 225678899999999998877665554
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.87 E-value=1.5e-08 Score=98.17 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=111.2
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.|..+..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+......
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------- 83 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID-------- 83 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT--------
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH--------
Confidence 344566788999999999999987765569999999999999999999886322100111223322211100
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----cccccc-cCCCCcEEEEEeCchH-HHhh-cCCcc
Q 044393 228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----DLETVG-IPANCCKILLTTRLQQ-VCDR-MGCDT 299 (513)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~~~~l~-~~~~~~~iivTtr~~~-v~~~-~~~~~ 299 (513)
.................+++.++|+||+.... .+..+. .+.++..+|+||.... +... .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 00000001100001223478899999986542 122222 2223778888877643 1111 12235
Q ss_pred eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
.+.+.+++.++..+++...+...... -.++....|++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999998876432222 22567788999999998865443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=2.8e-08 Score=98.49 Aligned_cols=194 Identities=18% Similarity=0.176 Sum_probs=110.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
|..+..++|++..++.|...+..+. .+.+.|+|++|+||||+|+.+++.......+.. ...........+..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQ 84 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHT
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhc
Confidence 3445668899999999999997764 357899999999999999999987754321100 00000000111110
Q ss_pred HhCC-----CCC-CCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeCchH-HHh
Q 044393 228 WLGW-----ELK-EKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTRLQQ-VCD 293 (513)
Q Consensus 228 ~l~~-----~~~-~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr~~~-v~~ 293 (513)
.... ... ..........+..+. ....+++.++|+||+..... ...+ ..+.++..+|++|.... +..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0000 000 000011111111100 11234678999999865421 1111 22333677777776532 111
Q ss_pred h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
. ......+.+.+++.++..+++...+..... .-..+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 122367999999999999999876632111 1125667889999999999776554
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.77 E-value=2.9e-08 Score=91.78 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=104.0
Q ss_pred ccccccc---hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 151 FFSSFET---TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 151 ~~~~~~g---r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.+..|++ .+..++.+..+...+..+.+.|+|++|+||||||+.+++..... ...+.++..+..... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 3444554 24667777777766556899999999999999999999887654 233455554331110 00
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----ccccccC----CC-Cc-EEEEEeCchH-------
Q 044393 228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----LETVGIP----AN-CC-KILLTTRLQQ------- 290 (513)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----~~~l~~~----~~-~~-~iivTtr~~~------- 290 (513)
..+... .++.+||+||+..... ...+... .. +. ++|+||+...
T Consensus 97 -------------------~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 97 -------------------ALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp -------------------GGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred -------------------HHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 000111 2567999999865422 1111111 11 33 4788777421
Q ss_pred --HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393 291 --VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351 (513)
Q Consensus 291 --v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 351 (513)
+...+.....+.+.+++.++..+++...+..... .-..+....|++.++|.+-.+..+..
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 2222212267999999999999999887642211 12256778899999998876655443
No 21
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=2.9e-07 Score=92.90 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=109.6
Q ss_pred cCCccccccccchhHHH---HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 146 MHIPRFFSSFETTKSAC---NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 146 ~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
...|..+..++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++..... ++.++........+
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI 91 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH
Confidence 34456677888999888 788888888877889999999999999999999887532 23333222211222
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccC--CCCcEEEE-EeCchH--H-Hhh
Q 044393 223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIP--ANCCKILL-TTRLQQ--V-CDR 294 (513)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~--~~~~~iiv-Ttr~~~--v-~~~ 294 (513)
..++. .... ....+++.+|+||++.... ....+... .+...+|. ||.+.. + ...
T Consensus 92 r~~~~----------------~a~~--~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIE----------------RARQ--NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHH----------------HHHH--HHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHH----------------HHHH--hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHH
Confidence 22221 1111 1123578999999996542 12222211 12344444 444432 1 111
Q ss_pred cCCcceeecCCCChHhHHHHHHHhcCCC------CCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 295 MGCDTRIKLDALDQAEGLDLLREHAGID------VADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
......+.+.+++.++...++.+.+... ....-.++....|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2223578899999999999998876421 1111235677889999999887554433
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=1e-07 Score=84.48 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=87.0
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC-----CCeEEEEEEcCCCChHHHHHH
Q 044393 150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI-----FDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~ 224 (513)
..+..++||+..++.+...+..+....+.|+|++|+|||+||+.+++....... ....+++.++. .
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 89 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L--- 89 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H---
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H---
Confidence 445668899999999999998776678999999999999999999988754210 12233332211 1
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCcc---------cccccc---cCCCCcEEEEEeCchH
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKEL---------DLETVG---IPANCCKILLTTRLQQ 290 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~---------~~~~l~---~~~~~~~iivTtr~~~ 290 (513)
. .. ..........+..++. ...+++.+|+|||+.... ++..+. ....+..+|+||....
T Consensus 90 -~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 90 -V---AG---AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp -H---TT---TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred -h---cc---CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 0 00 0011111112222111 123478899999996642 111111 1122567777777654
Q ss_pred HHhh-------cCCcceeecCCCChHhHHHHH
Q 044393 291 VCDR-------MGCDTRIKLDALDQAEGLDLL 315 (513)
Q Consensus 291 v~~~-------~~~~~~~~l~~L~~~e~~~lf 315 (513)
.... ......+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 2211 122236888888888876553
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.9e-07 Score=91.69 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=111.2
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc--CCCCeEEEEEEcCCCChHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE--KIFDEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i 225 (513)
.|..+..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..+. ...++.+...... .+.+.
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGIS-IVREK 109 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHH-HHTTH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchH-HHHHH
Confidence 345566788999999999999988755559999999999999999999886431 1111 2223333222222 22222
Q ss_pred HHHhCCC-CCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccc-cccCCCCcEEEEEeCchH-HHhhc-C
Q 044393 226 VKWLGWE-LKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LET-VGIPANCCKILLTTRLQQ-VCDRM-G 296 (513)
Q Consensus 226 ~~~l~~~-~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~-l~~~~~~~~iivTtr~~~-v~~~~-~ 296 (513)
+..+... ....... ... ....++.-+|++|++..... +.. +..+....++|++|.... +...+ .
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~--~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLE--NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHH--HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHhhhcccccchh-----hcc--cCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 2211100 0000000 000 11223667999999865421 111 112223667777776432 11111 1
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV 349 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 349 (513)
....+.+.+++.++....+...+...... -.++....|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12478999999999999998876432211 22567899999999999865443
No 24
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=6.8e-07 Score=85.35 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=101.8
Q ss_pred ccchhHHHHHHHHHHh----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---C--CeEEEEEEcCCCChHHHHHHH
Q 044393 155 FETTKSACNQITEALK----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---F--DEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i 225 (513)
..+|+.+++.|...|. .+....+.|+|++|+|||++++.+++.+..... . -..+.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 4578988888876663 456689999999999999999999999864321 1 134566666777888899999
Q ss_pred HHHhCCCCCC-CCHHHHHHHHHHHH-Hh--ccCCeEEEEEecCCCccc---ccccc--cCCC--CcEEEEEeCchH----
Q 044393 226 VKWLGWELKE-KDEEERADRLRLMF-SE--SKGRKILIILDDVWKELD---LETVG--IPAN--CCKILLTTRLQQ---- 290 (513)
Q Consensus 226 ~~~l~~~~~~-~~~~~~~~~l~~~~-~l--~~~~~~LlVLDd~~~~~~---~~~l~--~~~~--~~~iivTtr~~~---- 290 (513)
++++...... .... ..+..++ .+ ..+++++++||++....+ +-.+. .... ...||.++...+
T Consensus 102 ~~~L~g~~~~~~~~~---~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 102 WFAISKENLCGDISL---EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHSCCC--CCCCH---HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHhcCCCCCchHHH---HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9998543211 1111 2222222 22 245789999999976532 11111 1112 345555565421
Q ss_pred -H----HhhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393 291 -V----CDRMGCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 291 -v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
+ ...+. ...+.+.+++.++-.+++..++.
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 25799999999999999988764
No 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=2.3e-07 Score=91.25 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=106.8
Q ss_pred ccccccccchhHHHHHHHHHH-hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEE---------------
Q 044393 149 PRFFSSFETTKSACNQITEAL-KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVG--------------- 208 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~--------------- 208 (513)
|..+..++|++...+.+..++ ..+..+.+.|+|++|+||||+++.+++....... ++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 455667889999999999988 6665445999999999999999999985422110 00000
Q ss_pred ---EEEEcCCC-C--hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----c-cccccC
Q 044393 209 ---IATVSQDP-D--IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----L-ETVGIP 276 (513)
Q Consensus 209 ---wv~~~~~~-~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~ 276 (513)
++.+.... . .....++++..+.....-. ... .+. .+ .+++-++|||++..... + ..+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~-~ls---~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD---FQD-SKD---GL-AHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcccc---ccc-ccc---cc-CCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 01111000 0 0001222222221110000 000 000 01 13677999999987321 1 112223
Q ss_pred CCCcEEEEEeCchH-HHhh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCch-HHHHHHHHHHhCCCchHHHHHH
Q 044393 277 ANCCKILLTTRLQQ-VCDR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTL-TDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 277 ~~~~~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLai~~~~ 350 (513)
..+..+|++|++.. +... ......+.+.+++.++...++...+..... .-. ++.+..|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 34788999988742 2111 122267999999999999999877642111 111 3567889999999887554443
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.58 E-value=4.3e-06 Score=81.42 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=103.7
Q ss_pred CccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ 222 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (513)
.|..+..++|++..++.+..++.. .....+.|+|++|+|||+||+.+++..... | +.++.+....
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~---~~~~~~~~~~----- 93 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--I---KTTAAPMIEK----- 93 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--E---EEEEGGGCCS-----
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--e---EEecchhccc-----
Confidence 344667789999998888888753 334578999999999999999998876432 1 2222221111
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccc---------------cCCC
Q 044393 223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVG---------------IPAN 278 (513)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~---------------~~~~ 278 (513)
.......+ ... .+..+|+||++..... ++... ...+
T Consensus 94 ---------------~~~~~~~~----~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 94 ---------------SGDLAAIL----TNL-SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ---------------HHHHHHHH----HTC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ---------------hhHHHHHH----Hhc-cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 11111111 112 3567899999865421 11100 0111
Q ss_pred CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+..+|.+|.... +.. .....+.+.+++.++...++...+.... .....+....|++.+.|+|-.+..+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 356777766532 222 2236799999999999999988764221 11225677889999999996555443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=1.3e-06 Score=82.93 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=100.0
Q ss_pred cccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393 150 RFFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP 216 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 216 (513)
..+..++|.+..++.|...+.. .....+.|+|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3455677888888888776632 234679999999999999999999876432 2222222111
Q ss_pred ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------------cccccc------
Q 044393 217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------------DLETVG------ 274 (513)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------------~~~~l~------ 274 (513)
. ...... ......+.. ......+.+|+|||+.... .+..+.
T Consensus 89 ~--------------~~~~~~-~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 89 K--------------KFIGEG-ASLVKDIFK--LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp C--------------CSTTHH-HHHHHHHHH--HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred H--------------hccchH-HHHHHHHHH--HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0 011111 111111111 2223467899999995431 011111
Q ss_pred cCCCCcEEEEEeCchHHH-----hhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHH
Q 044393 275 IPANCCKILLTTRLQQVC-----DRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKV 348 (513)
Q Consensus 275 ~~~~~~~iivTtr~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~ 348 (513)
....+..||.||...... ........+.+.+.+.++..+++...+....... ......++..+.|. |-.+..
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHHHHHH
Confidence 112266788888754321 1111224789999999999999998875322111 11246788888874 434443
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.56 E-value=5e-07 Score=91.24 Aligned_cols=180 Identities=18% Similarity=0.151 Sum_probs=103.4
Q ss_pred cccccc-ch--hHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 151 FFSSFE-TT--KSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 151 ~~~~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.+..|+ |. ......+........ ...+.|+|++|+||||||+.+++.......-..+++++.. .....+.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 445555 43 233444444444432 5789999999999999999999987554111223444322 2333333
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----cccccc-----CCCCcEEEEEeCch--------
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----LETVGI-----PANCCKILLTTRLQ-------- 289 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----~~~l~~-----~~~~~~iivTtr~~-------- 289 (513)
..+... .. ..+.. ... .+..+|+|||+..... ...+.. ...|..||+||+..
T Consensus 177 ~~~~~~----~~----~~~~~--~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 177 DSMKEG----KL----NEFRE--KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHTT----CH----HHHHH--HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHcc----cH----HHHHH--Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 333211 11 11111 222 2567999999965432 111111 22377899998863
Q ss_pred -HHHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 290 -QVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 290 -~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
.+...+.....+.+.+++.++-.+++.+.+...... -.++....|++.++|.+-.+.-
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHH
Confidence 223333333578999999999999998876411111 1134577899999999875543
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=4.6e-07 Score=93.58 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=108.4
Q ss_pred CccccccccchhHHHHHHHHHHhc-----------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE
Q 044393 148 IPRFFSSFETTKSACNQITEALKK-----------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA 210 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 210 (513)
.|..+..++|++..++.|..++.. +..+.+.|+|++|+||||+|+.+++... + ..+.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 345667788999999999999864 1247899999999999999999998873 2 12334
Q ss_pred EEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----cccccc--CCCCcEEE
Q 044393 211 TVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETVGI--PANCCKIL 283 (513)
Q Consensus 211 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l~~--~~~~~~ii 283 (513)
+.+..... ......+.......... ......... ....+++.+|++||+..... +..+.. ...+..||
T Consensus 109 n~s~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~-~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iI 183 (516)
T 1sxj_A 109 NASDVRSK-TLLNAGVKNALDNMSVV---GYFKHNEEA-QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLI 183 (516)
T ss_dssp CTTSCCCH-HHHHHTGGGGTTBCCST---TTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEE
T ss_pred eCCCcchH-HHHHHHHHHHhccccHH---HHHhhhhhh-hhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEE
Confidence 44433332 22222222111100000 000000000 11235788999999965422 111111 11245566
Q ss_pred EEeCchH---HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393 284 LTTRLQQ---VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG 350 (513)
Q Consensus 284 vTtr~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 350 (513)
+++.... +.........+.+.+++.++..+++...+......- .++....|++.++|.+- ++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6665432 222122235789999999999999887664211111 13457889999999554 454443
No 30
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=1.2e-06 Score=85.46 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=105.6
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.|..+..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++.......-.....++.+.....
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--------- 90 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI--------- 90 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH---------
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH---------
Confidence 34556667788999999999998886555999999999999999999998753210011112222221111
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHH---hccCCeEEEEEecCCCcc--c---ccc-cccCCCCcEEEEEeCchH-HHhh-cC
Q 044393 228 WLGWELKEKDEEERADRLRLMFS---ESKGRKILIILDDVWKEL--D---LET-VGIPANCCKILLTTRLQQ-VCDR-MG 296 (513)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~~~---l~~~~~~LlVLDd~~~~~--~---~~~-l~~~~~~~~iivTtr~~~-v~~~-~~ 296 (513)
......+..+.. ...+.+-++|+|++.... . +.. +..+.....+|++|.... +... ..
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 111112221111 112357899999985432 1 111 112233667777776532 1111 11
Q ss_pred CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393 297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI 346 (513)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 346 (513)
....+.+.+++.++..+.+...+...... -.++..+.|++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 22478899999999998888766322111 12456788999999987744
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.49 E-value=5.5e-06 Score=77.41 Aligned_cols=176 Identities=17% Similarity=0.148 Sum_probs=93.4
Q ss_pred cccccchhHHHHHHHHHH---hc---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393 152 FSSFETTKSACNQITEAL---KK---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (513)
+..++|.+...+.|...+ .. .....+.|+|++|+|||+||+.+++..... .+.+..+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHh--
Confidence 344566666665554443 22 123568899999999999999999876432 22333322111
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-------------c----ccccc---c---C
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-------------D----LETVG---I---P 276 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-------------~----~~~l~---~---~ 276 (513)
.............+. ......+.+|+|||+.... . +..+. . .
T Consensus 78 ------------~~~~~~~~~~~~~~~---~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFK---EARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------SSTTHHHHHHHHHHH---HHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------hccChhHHHHHHHHH---HHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 001111111111222 2222367899999997541 0 11111 0 1
Q ss_pred CCCcEEEEEeCchHHHh-hc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 277 ANCCKILLTTRLQQVCD-RM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 277 ~~~~~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
..+..||.||....... .+ .....+.+...+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 12567777776543211 11 1235788999999999999987764222222222234778888888754 44433
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.49 E-value=7.1e-06 Score=77.26 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=94.5
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-
Q 044393 171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF- 249 (513)
Q Consensus 171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~- 249 (513)
......+.|+|++|+|||+||+.+++.... .. +.++.+... ...........+...+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~-~~i~~~~~~-----------------~g~~~~~~~~~~~~~~~ 118 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----PF-IKICSPDKM-----------------IGFSETAKCQAMKKIFD 118 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----SE-EEEECGGGC-----------------TTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----CE-EEEeCHHHh-----------------cCCchHHHHHHHHHHHH
Confidence 334578999999999999999999987532 21 122222100 0111111111222211
Q ss_pred HhccCCeEEEEEecCCCcc---------------cccccccC---CC-CcEEEEEeCchHHHhh---cCC-cceeecCCC
Q 044393 250 SESKGRKILIILDDVWKEL---------------DLETVGIP---AN-CCKILLTTRLQQVCDR---MGC-DTRIKLDAL 306 (513)
Q Consensus 250 ~l~~~~~~LlVLDd~~~~~---------------~~~~l~~~---~~-~~~iivTtr~~~v~~~---~~~-~~~~~l~~L 306 (513)
.....+..+|+|||+.... .+..+... .+ ...||.||........ .+. ...+.++++
T Consensus 119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 2222478899999985420 01111111 11 3456777877654433 111 356889999
Q ss_pred Ch-HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC------chHHHHHHHHhcCCChHHHHHHHHHHhhc
Q 044393 307 DQ-AEGLDLLREHAGIDVADTTLTDVSKRVADECKGL------PLAIKVVGSALTGRNADEWNVALDKLQNA 371 (513)
Q Consensus 307 ~~-~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~------PLai~~~~~~l~~~~~~~w~~~l~~l~~~ 371 (513)
+. ++...++.+... -..+....|++.+.|. +-++..+-......+...+..+++.+...
T Consensus 199 ~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 199 ATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp EEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 88 666666665321 1256678899999884 33344433333333456677777766554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.49 E-value=3.9e-06 Score=82.78 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=103.0
Q ss_pred cccccchhHHHHH---HHHHHhcCCc--cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE----cCCCChHHHH
Q 044393 152 FSSFETTKSACNQ---ITEALKKGST--KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV----SQDPDIINVQ 222 (513)
Q Consensus 152 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~~~~~ 222 (513)
+..++|++...+. +...+..+.. +.+.|+|++|+|||+||+.+++.......| +.+.. +........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 6778898887665 4555555543 589999999999999999999988643222 11221 1122233333
Q ss_pred HHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHHH--hccCC----eEEEEEecCC
Q 044393 223 SELVKWLGW-------------------------------ELKEKDEEERADRLRLMFS--ESKGR----KILIILDDVW 265 (513)
Q Consensus 223 ~~i~~~l~~-------------------------------~~~~~~~~~~~~~l~~~~~--l~~~~----~~LlVLDd~~ 265 (513)
...+..... .............+..... ...++ +.+|+|||+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333322100 0000001222222222111 11223 4599999997
Q ss_pred Cccc-----ccccccCCCCcEEEEEeCc-----------------hHHHhhcCCcceeecCCCChHhHHHHHHHhcCCCC
Q 044393 266 KELD-----LETVGIPANCCKILLTTRL-----------------QQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDV 323 (513)
Q Consensus 266 ~~~~-----~~~l~~~~~~~~iivTtr~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 323 (513)
.... +..+........++++|.. +.+... ...+.+.+++.++..+++...+....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6421 1111111112234444431 122222 24589999999999999997765322
Q ss_pred CCCchHHHHHHHHHHhC-CCchHHHHHH
Q 044393 324 ADTTLTDVSKRVADECK-GLPLAIKVVG 350 (513)
Q Consensus 324 ~~~~~~~~~~~i~~~~~-G~PLai~~~~ 350 (513)
. .-..+....|++.+. |.|-.+..+.
T Consensus 277 ~-~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 277 V-EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp C-CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 223567888999998 8776555443
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.47 E-value=9.7e-06 Score=78.24 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=101.4
Q ss_pred ccccccchhHHHHHHHHHHh------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 151 FFSSFETTKSACNQITEALK------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
.+..+.|.+...+.|...+. ....+-|.|+|++|+|||+||+.+++..... ..+.+..+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH--
Confidence 34456677777776666552 1123679999999999999999999986221 12223322211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------cccc-------ccCCC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETV-------GIPAN 278 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l-------~~~~~ 278 (513)
....+.......... . .....++.+|+|||+..... ...+ .....
T Consensus 84 ------------~~~~g~~~~~~~~lf-~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 ------------SKWLGESEKLVKNLF-Q--LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ------------CSSCCSCHHHHHHHH-H--HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ------------hhhhhHHHHHHHHHH-H--HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 111122222222222 2 22234789999999965411 0111 01122
Q ss_pred CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHHH
Q 044393 279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVGS 351 (513)
Q Consensus 279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~~ 351 (513)
+..||.||.... +.. .....+.+...+.++-.+++...+....... .......|++.+.|..- .|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556666776432 222 3336788899999999999988775332111 24567889999998744 4555544
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.44 E-value=5.6e-06 Score=80.46 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCC
Q 044393 157 TTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQD 215 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~ 215 (513)
-.+...+.+...+.++.. +.+.++|+.|+||||+|+.+++...... +++ ..++....
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~- 83 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK- 83 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT-
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc-
Confidence 345667788888877753 5799999999999999999998765321 122 12221110
Q ss_pred CChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeC
Q 044393 216 PDIINVQSELVKWLGWELKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTR 287 (513)
Q Consensus 216 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr 287 (513)
.......++....+.. +.. ..+++-++|+|++..... +..+..+.++..+|++|.
T Consensus 84 ----------------~~~~~~i~~ir~l~~~-~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 84 ----------------GKNTLGVDAVREVTEK-LNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp ----------------TCSSBCHHHHHHHHHH-TTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred ----------------cCCCCCHHHHHHHHHH-HhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 0011112222222211 111 124678999999876421 222233444677777777
Q ss_pred chH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 288 LQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 288 ~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+.. +...+ +....+.+.+++.++..+++.+... . .++.+..+++.++|.|..+..+.
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~-~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M-SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C-CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 643 22222 2236799999999999999988761 1 14566889999999998665443
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.43 E-value=2.8e-06 Score=82.28 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=101.8
Q ss_pred CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.|..+..++|++..++.+..++..+.. +.+.+.|++|+|||++|+.+++..... .+.++.+. .. ...+...+
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~-----~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD-----MMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE-----EEEEETTT-CC-HHHHHTHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC-----EEEEcccc-cC-HHHHHHHH
Confidence 355667788999999999999987654 577788889999999999999887422 23333322 11 22222222
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccccc----cCCCCcEEEEEeCchH-----HHhh
Q 044393 227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---DLETVG----IPANCCKILLTTRLQQ-----VCDR 294 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~l~----~~~~~~~iivTtr~~~-----v~~~ 294 (513)
..+.. . .-..+++.+|++||+.... ....+. .+..+..+|+||.... +...
T Consensus 94 ~~~~~---------------~--~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 94 TNFAS---------------A--ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHH---------------B--CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHh---------------h--cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 11100 0 0112378899999997653 111111 1223678888887643 2222
Q ss_pred cCCcceeecCCCChHhHHHHH-------HHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393 295 MGCDTRIKLDALDQAEGLDLL-------REHAGIDVADTTLTDVSKRVADECKGLPLAIK 347 (513)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 347 (513)
+ ..+.+.+++.++-.+++ .+.+......-...+....|++.++|.+-.+.
T Consensus 157 ~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 C---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp S---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred C---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 2 47899999988744332 22222111111112677888888988876443
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.41 E-value=1.8e-05 Score=76.49 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=103.5
Q ss_pred ccccccccchhHHHHHHHHHHh----------cC--CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393 149 PRFFSSFETTKSACNQITEALK----------KG--STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP 216 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 216 (513)
+..+..++|.+..++.|...+. .. ..+-+.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~--- 85 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS--- 85 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH---
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH---
Confidence 3445667788888888877762 11 13579999999999999999999876432 1222211
Q ss_pred ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------cccc-------ccC
Q 044393 217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETV-------GIP 276 (513)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l-------~~~ 276 (513)
. +.. ...+.. ......+.. .....++.+|+|||+..... ...+ ...
T Consensus 86 ---~----l~~----~~~g~~-~~~~~~~f~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 86 ---D----LVS----KWMGES-EKLVKQLFA--MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp ---H----HHT----TTGGGH-HHHHHHHHH--HHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred ---H----Hhh----cccchH-HHHHHHHHH--HHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 1 110 011111 111222222 22234778999999964321 1111 112
Q ss_pred CCCcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHH
Q 044393 277 ANCCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVG 350 (513)
Q Consensus 277 ~~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~ 350 (513)
..+..||.||.... +.. .....+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22566776777532 222 2235688889999999999998886432221 245678899999884 44454444
Q ss_pred H
Q 044393 351 S 351 (513)
Q Consensus 351 ~ 351 (513)
.
T Consensus 229 ~ 229 (322)
T 3eie_A 229 K 229 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.41 E-value=1.3e-05 Score=76.46 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=101.1
Q ss_pred cccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 150 RFFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
..+..++|.+..++.|...+.. .....+.|+|++|+||||||+.+++..... .+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh
Confidence 3455677888888888776632 124689999999999999999999876422 22233222111
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc-----------------cccc-cCC--
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL-----------------ETVG-IPA-- 277 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~-----------------~~l~-~~~-- 277 (513)
..... .......+.. .....++.+|+|||+.....- ..+. .+.
T Consensus 93 --------------~~~~~-~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 --------------KYVGD-GEKLVRALFA--VARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp --------------SSCSC-HHHHHHHHHH--HHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred --------------cccch-HHHHHHHHHH--HHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 11111 1122222222 222247789999999654210 0000 111
Q ss_pred --CCcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393 278 --NCCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV 349 (513)
Q Consensus 278 --~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 349 (513)
.+..||.||.... +... ....+.+...+.++-..++...+..... .-.......|++.+.|.+- .+..+
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1456777777542 2222 2356777888888888888776642211 1124567889999999886 55444
Q ss_pred H
Q 044393 350 G 350 (513)
Q Consensus 350 ~ 350 (513)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.36 E-value=1.8e-06 Score=83.69 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcC--CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCC
Q 044393 160 SACNQITEALKKG--STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKD 237 (513)
Q Consensus 160 ~~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 237 (513)
.....+...+..+ ....+.|+|++|+||||||+.+++..... .+ .+++++.. .....+...+.. ..
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~----~~ 88 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKK----GT 88 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHH----TC
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHc----Cc
Confidence 3444455555443 24689999999999999999999987543 12 23344322 223333322211 00
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCccc---c-ccccc-----CCCCcEEEEEeCch---------HHHhhcCCcc
Q 044393 238 EEERADRLRLMFSESKGRKILIILDDVWKELD---L-ETVGI-----PANCCKILLTTRLQ---------QVCDRMGCDT 299 (513)
Q Consensus 238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---~-~~l~~-----~~~~~~iivTtr~~---------~v~~~~~~~~ 299 (513)
.. .+.. ... +..+|+|||+..... . ..+.. ...+..+|+||... .+...+....
T Consensus 89 ~~----~~~~---~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 89 IN----EFRN---MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp HH----HHHH---HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred HH----HHHH---Hhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 11 1111 112 466999999965431 1 11111 11266788887642 2222333335
Q ss_pred eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
.+.+.+ +.++..+++...+..... .-.++....|++.+ |.+-.
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence 689999 999999999887642211 12256678888888 77654
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.35 E-value=1.6e-05 Score=77.97 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=100.8
Q ss_pred ccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 151 FFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
.+..++|.+..++.|...+.. .....|.|+|++|+|||+||+.+++..... .+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT-----FFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe-----EEEEehHHhhc-
Confidence 445577888888888776631 234789999999999999999999876421 23333332111
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cC-C
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IP-A 277 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~-~ 277 (513)
..... .......+.. .....++.+|+|||+..... ...+. .. .
T Consensus 156 -------------~~~g~-~~~~~~~~~~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 -------------KWVGE-GEKMVRALFA--VARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp -------------SSTTH-HHHHHHHHHH--HHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred -------------cccch-HHHHHHHHHH--HHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00010 1111111111 22224678999999843210 11111 01 1
Q ss_pred CCcEEEEEeCchHHH-hh--cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHH
Q 044393 278 NCCKILLTTRLQQVC-DR--MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGS 351 (513)
Q Consensus 278 ~~~~iivTtr~~~v~-~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~ 351 (513)
.+..||.||...... .. -.....+.+...+.++..+++...+...... -..+....|++.+.|. +-.|..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 245666677653211 11 1223577888899999999988776432111 1246678899999984 455655544
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.34 E-value=1.9e-05 Score=77.36 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=100.7
Q ss_pred ccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 151 FFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
.+..++|.+..++.|...+.. ...+-|.|+|++|+|||+||+.+++..... .+.+..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 445577888888777776621 112458899999999999999999987432 1222211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cCCC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IPAN 278 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~~~ 278 (513)
.+ .. ...+........ +.. .....++.+|+|||+..... ...+. ....
T Consensus 119 -~l----~~----~~~g~~~~~~~~-~f~--~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 -DL----VS----KWMGESEKLVKQ-LFA--MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp -HH----HS----CC---CHHHHHH-HHH--HHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred -HH----hh----hhcchHHHHHHH-HHH--HHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 10 111112222222 222 22234789999999965321 11111 1122
Q ss_pred CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHH
Q 044393 279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGS 351 (513)
Q Consensus 279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~ 351 (513)
+..||.||.... +.. .....+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+..
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566776776542 222 3346788899999999999998875432111 245678899999985 444555443
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=3.5e-06 Score=80.94 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred ccchhHHHHHHHHHHh---------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393 155 FETTKSACNQITEALK---------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (513)
++|.+...+.|...+. ......+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG----
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH----
Confidence 4566666666654442 233457999999999999999999988765432222123333311
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----------ccccc---c-cCCCCcEEEE
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----------DLETV---G-IPANCCKILL 284 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----------~~~~l---~-~~~~~~~iiv 284 (513)
.+.....+.........+.. . +..+|+|||+.... ....+ . ....+..+|+
T Consensus 109 --------~l~~~~~g~~~~~~~~~~~~----~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 --------DLVGQYIGHTAPKTKEVLKR----A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp --------GTCCSSTTCHHHHHHHHHHH----H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred --------HhhhhcccccHHHHHHHHHh----c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111111111222222221 1 34599999997431 11111 1 1122667888
Q ss_pred EeCchH----------HHhhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393 285 TTRLQQ----------VCDRMGCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 285 Ttr~~~----------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
||.... +...+ ...+.+.+++.++-.+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 886532 12221 26789999999999999987764
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.29 E-value=3.7e-05 Score=77.60 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=100.8
Q ss_pred cccccccchhHHHHHHHHHHh------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 150 RFFSSFETTKSACNQITEALK------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
..+..++|.+...+.|...+. ....+-|.|+|++|+|||+||+.+++..... .++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~------~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS------TFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS------EEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC------CEEEEeHHH-
Confidence 345567788888887777662 1223689999999999999999999986211 123333221
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cCC
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IPA 277 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~~ 277 (513)
+ ... ..+. ........ .. .....++.+|+|||+..... ...+. ...
T Consensus 204 l---~~~---~~g~--~~~~~~~~----f~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 L---VSK---WLGE--SEKLVKNL----FQ--LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------CCCTHHHH----HH--HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred H---Hhh---hcch--HHHHHHHH----HH--HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1 100 0111 01111111 11 12224788999999975410 01111 112
Q ss_pred CCcEEEEEeCchHHHh---hcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc-hHHHHHHH
Q 044393 278 NCCKILLTTRLQQVCD---RMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP-LAIKVVGS 351 (513)
Q Consensus 278 ~~~~iivTtr~~~v~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~ 351 (513)
.+..||.||....... .-.....+.+...+.++-..+|...+....... .......|++.+.|.. -.|..+..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2667777777542211 112335788888889999999988875322111 2456788999999954 45555443
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.26 E-value=3.7e-05 Score=76.37 Aligned_cols=179 Identities=16% Similarity=0.066 Sum_probs=101.2
Q ss_pred ccccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393 149 PRFFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP 216 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 216 (513)
+..+..++|.+..++.|...+.. ....-+.|+|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT-----FFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE-----EEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc-----EEEeeHHHhh
Confidence 34566788999888888877721 123689999999999999999998875422 2222222211
Q ss_pred ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cC
Q 044393 217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IP 276 (513)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~ 276 (513)
. . .......... .+.. ......+.+|+|||+..... ...+. ..
T Consensus 186 ~--~------------~~g~~~~~~~-~~~~--~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 186 S--K------------YVGEGEKLVR-ALFA--VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp --------------------CHHHHH-HHHH--HHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred c--c------------ccchHHHHHH-HHHH--HHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 1 0 0011111111 1111 22223668999999964310 00110 01
Q ss_pred -CCCcEEEEEeCchHHHh-h--cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393 277 -ANCCKILLTTRLQQVCD-R--MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG 350 (513)
Q Consensus 277 -~~~~~iivTtr~~~v~~-~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 350 (513)
.....||.||....... . -.....+.+...+.++..+++...+...... ...+....|++.+.|..- +|..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11456666776532111 1 1223568889999999999998877543222 224567889999988655 554544
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.23 E-value=1.2e-05 Score=76.75 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=95.8
Q ss_pred ccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 151 FFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
.+..++|.+..++.|...+.. .....+.|+|++|+|||+||+.+++..... ++.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEEEE----
Confidence 344566777777766665531 234689999999999999999999876422 22222
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I 275 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~ 275 (513)
...+.... ++.. .......+. ......+.+|+||++..... ...+. .
T Consensus 82 ~~~l~~~~---~g~~-----~~~~~~~f~---~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 GPELLTMW---FGES-----EANVREIFD---KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHHH---HTTC-----TTHHHHHHH---HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred hHHHHhhh---cCch-----HHHHHHHHH---HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 12222211 1211 111122222 22224679999999864210 01111 1
Q ss_pred CCCCcEEEEEeCchHHHh-h-c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 276 PANCCKILLTTRLQQVCD-R-M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 276 ~~~~~~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
...+..||.||....... . + .....+.+...+.++-.+++...+........ .....+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~--~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS--CCHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc--chHHHHHHHcCCCCHH
Confidence 112667888887653221 1 1 12357889999999999999887753221111 1134566778887754
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.21 E-value=4.1e-06 Score=73.55 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393 158 TKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK 234 (513)
Q Consensus 158 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 234 (513)
.+..++.+..++.+ .....+.|+|++|+|||||++.+++.......+. +.+++ ..++...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44556666655533 2237899999999999999999999886432222 22332 33344444333221111
Q ss_pred CCCHHHHHHHHHHHHHhccCCeEEEEEecCCC-ccc-c-----cccccC--CCCcEEEEEeCch
Q 044393 235 EKDEEERADRLRLMFSESKGRKILIILDDVWK-ELD-L-----ETVGIP--ANCCKILLTTRLQ 289 (513)
Q Consensus 235 ~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~-~~~-~-----~~l~~~--~~~~~iivTtr~~ 289 (513)
. . .+. .+ . +.-+|||||++. ..+ + ..+... ..+..+|+||+..
T Consensus 92 ~----~---~~~---~~-~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T----K---FLK---TV-L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S----H---HHH---HH-H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H----H---HHH---Hh-c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1 111 11 1 556999999974 222 1 111111 1378899999853
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.17 E-value=4.8e-06 Score=73.17 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=43.9
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+..++|++.+++.+...+.......+.|+|++|+||||||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445668899999999999998766678899999999999999999988744
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.13 E-value=1.1e-05 Score=88.56 Aligned_cols=157 Identities=12% Similarity=0.163 Sum_probs=86.6
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---C-C-eEEEEEEcCCCChHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---F-D-EVGIATVSQDPDIINVQS 223 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~ 223 (513)
+..+.+++||+.++..+...+.....+-+.|+|++|+||||||+.+++....... . . .++++.++.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 4556778999999999999998766667899999999999999999998744211 1 1 222332211100
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccc-cc--cCCCCcEEEEEeCchHH
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLET-VG--IPANCCKILLTTRLQQV 291 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~-l~--~~~~~~~iivTtr~~~v 291 (513)
+....+.........+.. ....+++.+|++||+.... +... +. ...++..+|.+|.....
T Consensus 240 ------g~~~~g~~~~~l~~~~~~--~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYRGEFEERLKAVIQE--VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHH--HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred ------cCccchHHHHHHHHHHHH--HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 001111111122222222 1122378999999996542 1111 11 11124566666654432
Q ss_pred H-----hhc-CCcceeecCCCChHhHHHHHHHhc
Q 044393 292 C-----DRM-GCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 292 ~-----~~~-~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
. ..+ .....+.+.+++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111 122458899999999999987543
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00011 Score=71.88 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=94.7
Q ss_pred cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|-+...+.|...+. . ..++-|.++||+|+|||.||+.+++..... | +.+..+.-.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~-- 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELV-- 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhh--
Confidence 3444566666665555442 1 124678999999999999999999987653 2 223222211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------cC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------IP 276 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~~ 276 (513)
...-+.+.... ..+.. ......+++|++|+++.... +..++ ..
T Consensus 220 ------------sk~vGese~~v-r~lF~--~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 ------------QKYIGEGSRMV-RELFV--MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ------------CSSTTHHHHHH-HHHHH--HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ------------ccccchHHHHH-HHHHH--HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 11111111111 11111 22234789999999864310 11111 11
Q ss_pred CCCcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 277 ANCCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 277 ~~~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
..+..||.||...+. ...-.....+.+...+.++-.++|+.+...-....+. ....|++.|.|.--
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~SG 355 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCSG 355 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCCH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCCH
Confidence 125567777775432 2211334688999999999999998777532222211 14678888988654
No 50
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.7e-05 Score=75.66 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc--CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE--KIFDEVGIATVSQDPDIINVQSELVKWLGWELK 234 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 234 (513)
|.+..++.|...+.+++.+...++|++|+||||+|+.+++..... .+.+ ...+..+......+..+++.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir~li~~~~~~-- 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIRTIKDFLNYS-- 77 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHHHHHHHHTSC--
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHHHHHHHHhhc--
Confidence 345677888888887777799999999999999999998753211 1233 23333222111122233344333211
Q ss_pred CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCch-HHHhhcCCcceeecCCCC
Q 044393 235 EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRLQ-QVCDRMGCDTRIKLDALD 307 (513)
Q Consensus 235 ~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~~-~v~~~~~~~~~~~l~~L~ 307 (513)
-..+++-++|+|++.... . +..+..|.+.+.+|++|.+. .+...+... .+++.+++
T Consensus 78 ----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 78 ----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp ----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred ----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 112467899999986642 1 22233444577777777654 344444444 89999999
Q ss_pred hHhHHHHHHHhc
Q 044393 308 QAEGLDLLREHA 319 (513)
Q Consensus 308 ~~e~~~lf~~~~ 319 (513)
.++..+.+.+..
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.10 E-value=3.8e-05 Score=78.10 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=84.2
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----Ce-EEEEEEcCCCChHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DE-VGIATVSQDPDIINVQS 223 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~ 223 (513)
+..+.+++|++.++..+...+......-+.|+|++|+|||+||+.+++........ .. .+.++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 34566789999999999999977655778899999999999999999987432100 11 1112211
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccc-cccCC--CCcEEEEEeCchHHHhh------
Q 044393 224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLET-VGIPA--NCCKILLTTRLQQVCDR------ 294 (513)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-l~~~~--~~~~iivTtr~~~v~~~------ 294 (513)
.. ..+.........+. .....++.+|++| ...+... +.... +..++|.+|........
T Consensus 246 ---~~----~~g~~e~~~~~~~~---~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 246 ---TK----YRGEFEDRLKKVMD---EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp --------------CTTHHHHHH---HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred ---cc----ccchHHHHHHHHHH---HHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHH
Confidence 00 00000011111222 2222467899999 1122211 22111 24667766665431110
Q ss_pred -cCCcceeecCCCChHhHHHHHHHhcC
Q 044393 295 -MGCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 295 -~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
......+.+.+.+.++..+++.....
T Consensus 313 l~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 313 LERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11124689999999999999987664
No 52
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.03 E-value=1.4e-05 Score=71.56 Aligned_cols=53 Identities=28% Similarity=0.180 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhcCC----ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE
Q 044393 158 TKSACNQITEALKKGS----TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV 212 (513)
Q Consensus 158 r~~~~~~l~~~l~~~~----~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 212 (513)
+...++.+..++.... ...+.|+|++|+||||||+.+++..... ...+.++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 3345566666665431 2689999999999999999999988654 234455543
No 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.02 E-value=4e-05 Score=69.90 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++....+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 89999999999999999999987754
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00017 Score=71.67 Aligned_cols=166 Identities=15% Similarity=0.141 Sum_probs=92.6
Q ss_pred cccchhHHHHHHHHHHh-------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393 154 SFETTKSACNQITEALK-------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN 220 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (513)
...|-+...+.|...+. -...+-|.++||+|+|||+||+.+++..... | +.+..+.-
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f---i~vs~s~L----- 279 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F---IRVIGSEL----- 279 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG-----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e---EEEEhHHh-----
Confidence 34566666666654431 1235789999999999999999999987643 2 22222211
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--------------------ccccc--cCCC
Q 044393 221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--------------------LETVG--IPAN 278 (513)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--------------------~~~l~--~~~~ 278 (513)
....-+.+..... .+.. ......+++|++|++..... +..+- ....
T Consensus 280 ---------~sk~vGesek~ir-~lF~--~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 280 ---------VQKYVGEGARMVR-ELFE--MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------CCCSSSHHHHHHH-HHHH--HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hcccCCHHHHHHH-HHHH--HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111111111111 1111 22334789999999864311 11110 1111
Q ss_pred CcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 279 CCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 279 ~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
+..||.||..... .+.-.....+.+...+.++-.++|+.++..-...... ....|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 5566777765432 2111234688898889999999998877532222211 1466888888865
No 55
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.99 E-value=2.2e-05 Score=73.26 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=25.4
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.+++-...
T Consensus 34 i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 34 IASG--EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EETT--CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3455 89999999999999999999886643
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.98 E-value=0.00044 Score=64.17 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=90.3
Q ss_pred cccccccchhHHHHHHHHHH---hc---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 150 RFFSSFETTKSACNQITEAL---KK---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
..+..++|.+...+.+...+ .. ....-+.|+|++|+||||||+.+++..... | +.++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~-----~~i~~~~- 80 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-----FTISGSD- 80 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E-----EEECSCS-
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E-----EEEeHHH-
Confidence 34555667766665554433 21 113468999999999999999999876422 1 2222111
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I 275 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~ 275 (513)
.. ..............+. ......+.++++|++..... +..+. .
T Consensus 81 ~~-----------~~~~~~~~~~~~~~~~---~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 81 FV-----------EMFVGVGASRVRDMFE---QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ST-----------TSCCCCCHHHHHHHHH---HHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HH-----------HHhhhhhHHHHHHHHH---HHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00 0011122222222222 22234678999999832110 01110 1
Q ss_pred CCCCcEEEEEeCchHHH-hhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCC-CchHHH
Q 044393 276 PANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKG-LPLAIK 347 (513)
Q Consensus 276 ~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~ 347 (513)
...+..||.||...... ..+ .....+.+...+.++-.+++..........++ .....++..+.| .+--|.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHH
Confidence 11256677777764321 111 12356778888888888888776643211111 113456677777 554443
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.95 E-value=0.00013 Score=74.30 Aligned_cols=167 Identities=18% Similarity=0.189 Sum_probs=93.5
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+..++|.+..++.|...+.. ....-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~-----fv~vn~~----- 272 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----- 272 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE-----EEEEEHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC-----EEEEEch-----
Confidence 44577888888887776632 234679999999999999999998876321 2223211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc---cCCCC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG---IPANC 279 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~---~~~~~ 279 (513)
.+. ....+.........+. ....+++.+|+|||+..... +-.+. ....+
T Consensus 273 -----~l~----~~~~g~~~~~~~~~f~---~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -----EIM----SKLAGESESNLRKAFE---EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -----HHH----TSCTTHHHHHHHHHHH---HHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -----Hhh----hhhcchhHHHHHHHHH---HHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 1111111111122222 23335788999999832110 11111 11125
Q ss_pred cEEEEEeCchHH-Hhhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC
Q 044393 280 CKILLTTRLQQV-CDRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL 342 (513)
Q Consensus 280 ~~iivTtr~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~ 342 (513)
..||.||..... ...+ .....+.+...+.++-.++|..++....... ......+++.+.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~--~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD--DVDLEQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT--TCCHHHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc--hhhHHHHHHHccCC
Confidence 677777776532 1111 2235688999999999999998875322111 11235577777775
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.94 E-value=0.00019 Score=77.87 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=91.3
Q ss_pred cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEE-EEcCCCChHHHHHH
Q 044393 150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIA-TVSQDPDIINVQSE 224 (513)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv-~~~~~~~~~~~~~~ 224 (513)
..+..++||+.++..+...+......-+.|+|++|+||||+|+.+++...... .....++. ..+.-
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 45567899999999999999876667889999999999999999998874321 11223321 11100
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------cccc-cccC--CCCcEEEEEeCchHH
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------DLET-VGIP--ANCCKILLTTRLQQV 291 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~~~~-l~~~--~~~~~iivTtr~~~v 291 (513)
. .+....+ ........+.. .+...++.+|++||+.... +... +... .++..+|.+|.....
T Consensus 254 -~--~~~~~~g-~~e~~l~~~~~--~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 -L--AGTKYRG-DFEKRFKALLK--QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_dssp ----CCCCCSS-CHHHHHHHHHH--HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHH
T ss_pred -h--ccccccc-hHHHHHHHHHH--HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHH
Confidence 0 0011111 11222222222 3333467999999996541 1111 1111 225677777765443
Q ss_pred Hhhc-------CCcceeecCCCChHhHHHHHHHhc
Q 044393 292 CDRM-------GCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 292 ~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
.... .....+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 2111 111368899999999998887654
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.94 E-value=2.3e-05 Score=72.57 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++....
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999987654
No 60
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.0002 Score=71.26 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=93.3
Q ss_pred cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|-+..++.|...+. . ..++-|.++||+|+|||+||+.+++..... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 3344566666655555442 1 124789999999999999999999987643 22233222111
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------cC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------IP 276 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~~ 276 (513)
...+.+.. ....+.. ......+++|++|+++.... +..++ ..
T Consensus 254 -------------k~~Gese~-~ir~~F~--~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 -------------KYIGESAR-IIREMFA--YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -------------SSSSHHHH-HHHHHHH--HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -------------ccchHHHH-HHHHHHH--HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 11111111 1111111 22334889999999964310 11111 11
Q ss_pred CCCcEEEEEeCchHHHhh-c-C---CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 277 ANCCKILLTTRLQQVCDR-M-G---CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 277 ~~~~~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
..+..||.||......+. + . -...+.+...+.++-.++|+.+...-....+. ....|++.+.|.--
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~sG 388 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFNG 388 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCCH
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCCH
Confidence 125678888876543221 1 1 23568888888888888888776432211111 14667888888654
No 61
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.92 E-value=3.2e-05 Score=70.33 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 79999999999999999999887653
No 62
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.92 E-value=1.9e-05 Score=71.09 Aligned_cols=26 Identities=42% Similarity=0.718 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.....
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 79999999999999999999887653
No 63
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.92 E-value=3.5e-05 Score=71.47 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999887653
No 64
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.91 E-value=2.2e-05 Score=71.89 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+..-..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 89999999999999999999887654
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.91 E-value=0.00035 Score=67.66 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=96.5
Q ss_pred CCccccccccchhHHHHHHHHHHhcC-----CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHH
Q 044393 147 HIPRFFSSFETTKSACNQITEALKKG-----STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINV 221 (513)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (513)
..+..+..++|.+..++.+...+..+ ....+.|+|++|+||||||+.+++..... |. ..+.....
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~-----~~sg~~~~--- 88 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH-----VTSGPVLV--- 88 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE-----EEETTTCC---
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE-----EEechHhc---
Confidence 34556677888888888888777542 34679999999999999999999987432 11 11111000
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----c----cccc---------------cCC
Q 044393 222 QSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----L----ETVG---------------IPA 277 (513)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~----~~l~---------------~~~ 277 (513)
...+....+. .+ . ++.++++|++..... + +... ...
T Consensus 89 ---------------~~~~l~~~~~---~~-~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 89 ---------------KQGDMAAILT---SL-E-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp ---------------SHHHHHHHHH---HC-C-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred ---------------CHHHHHHHHH---Hc-c-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 0011111111 11 1 344667777643210 0 0000 000
Q ss_pred CCcEEE-EEeCchHHHhhc--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393 278 NCCKIL-LTTRLQQVCDRM--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG 350 (513)
Q Consensus 278 ~~~~ii-vTtr~~~v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 350 (513)
+...++ .|++...+...+ .....+.+++.+.++-.+++.+.+.... .....+.+..|++.+.|.|-.+..+.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 112333 344433222111 1223578999999999999988764211 12235778999999999997554433
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00034 Score=68.84 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=93.3
Q ss_pred ccccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 151 FFSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
.+....|-+...+.|...+. . ...+-|.++||+|+|||.||+.+++..... | +.+..+.-
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l-- 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL-- 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG--
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh--
Confidence 34444566666555554442 1 124679999999999999999999987653 2 12222211
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I 275 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~ 275 (513)
.....+.+. .....+.. ......+++|++|+++.... +..++ .
T Consensus 253 ------------~sk~vGese-k~ir~lF~--~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 ------------IQKYLGDGP-RLCRQIFK--VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ------------CCSSSSHHH-HHHHHHHH--HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ------------hhccCchHH-HHHHHHHH--HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111111111 11112222 22334789999999864310 11111 1
Q ss_pred CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393 276 PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL 344 (513)
Q Consensus 276 ~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 344 (513)
...+..||.||...+..+. + .....+.+...+.++-.++|+.+...-....+. ....|++.+.|.--
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfSG 389 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLSG 389 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCCH
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCCH
Confidence 1125567777776543221 1 123568888888888889998877532212111 14667888888653
No 67
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.90 E-value=5.2e-05 Score=70.84 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.9
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
+..+ .+++|+|++|+|||||++.++.-
T Consensus 43 i~~G--e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPG--EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTT--CEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 3445 89999999999999999999986
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=8.7e-05 Score=73.77 Aligned_cols=169 Identities=16% Similarity=0.124 Sum_probs=91.8
Q ss_pred ccccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393 151 FFSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD 217 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 217 (513)
.+....|-+...+.|...+. . ..++-|.++||+|+|||+||+.+++..... | +.+..+.-
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l-- 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--F---LKLAAPQL-- 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG--
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--E---EEEehhhh--
Confidence 34455676766666665431 1 124689999999999999999999987643 1 22222211
Q ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-------c---------ccccc---cC--
Q 044393 218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-------D---------LETVG---IP-- 276 (513)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-------~---------~~~l~---~~-- 276 (513)
.....+.+.. ....+.. ......+++|++|+++... . +..++ ..
T Consensus 252 ------------~~~~vGese~-~ir~lF~--~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 ------------VQMYIGEGAK-LVRDAFA--LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ------------CSSCSSHHHH-HHHHHHH--HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ------------hhcccchHHH-HHHHHHH--HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 1111111111 1111111 2222378999999984320 0 11111 11
Q ss_pred -CCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 277 -ANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 277 -~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
..+..||.||......+. + .....+.+...+.++-.++|+.+...-....+. ....|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 114567777776433221 1 123578888888888888887665421111111 1466888888865
No 69
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.90 E-value=2e-05 Score=73.85 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=25.3
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.++.-...
T Consensus 31 i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 31 IKRG--EVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EETT--SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3445 89999999999999999999886643
No 70
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.90 E-value=3.8e-05 Score=70.43 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++....+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999987754
No 71
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.90 E-value=5.1e-05 Score=73.62 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=25.9
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..+ .+++|+|++|+|||||++.+..-.+.
T Consensus 50 ~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 50 HVPAG--QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EECTT--CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEcCC--CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 34455 89999999999999999999887653
No 72
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=4.5e-05 Score=69.63 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=60.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC--------------------
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK-------------------- 234 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 234 (513)
.+++|+|++|+|||||++.++....... ..+.|+.. ......+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTT--EESRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEES--SSCHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEc--ccCHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 7999999999999999999997765432 23444443 33333333332 23332111
Q ss_pred ----CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccc---cc----cc--CCCCcEEEEEeCch
Q 044393 235 ----EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLE---TV----GI--PANCCKILLTTRLQ 289 (513)
Q Consensus 235 ----~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~---~l----~~--~~~~~~iivTtr~~ 289 (513)
..+..+....+.......+.+..+||+|++.... +.. .+ .. ...|..||+|||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1133444444444222222234599999997543 221 11 11 11278999999975
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.88 E-value=1.1e-05 Score=74.83 Aligned_cols=23 Identities=39% Similarity=0.317 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.+++|+|++|+|||||++.++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999999999999999843
No 74
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.86 E-value=6.8e-06 Score=78.19 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.3
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.+.+-...
T Consensus 77 i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 77 VMPG--QTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp ECTT--CEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EcCC--CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 3445 89999999999999999999886653
No 75
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.86 E-value=5.6e-05 Score=69.63 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.++.-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 8999999999999999999988764
No 76
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.86 E-value=2.5e-05 Score=81.85 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+.-.+.++ .+++|+|++|+|||||++.+.+-..+
T Consensus 357 ~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 357 PALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred cccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3555555555666 89999999999999999999887654
No 77
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.86 E-value=3.2e-05 Score=71.98 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 89999999999999999999887653
No 78
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.86 E-value=6e-05 Score=70.15 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=64.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeE---------EEE-EEcCCCC----hHH--------------HHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEV---------GIA-TVSQDPD----IIN--------------VQS 223 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~---------~wv-~~~~~~~----~~~--------------~~~ 223 (513)
.+++|+|++|+|||||++.++... +.. .++.. ... ++.+.+. +.+ ...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 799999999999999999999876 420 01100 012 3444432 111 123
Q ss_pred HHHHHhCCC-CC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCch
Q 044393 224 ELVKWLGWE-LK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQ 289 (513)
Q Consensus 224 ~i~~~l~~~-~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~ 289 (513)
++++.++.. .. ..+..+ ..-.+.. .+.. ++-+|+||++.+..|.... ...... .||++||+.
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAr--aL~~-~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~ 185 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSL--ALAS-QPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHEL 185 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHH--HHHT-CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCG
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCH
Confidence 444555543 11 111111 1112222 4444 6779999999998774321 111123 899999997
Q ss_pred HHHhhc
Q 044393 290 QVCDRM 295 (513)
Q Consensus 290 ~v~~~~ 295 (513)
..+..+
T Consensus 186 ~~~~~~ 191 (263)
T 2pjz_A 186 DMLNLY 191 (263)
T ss_dssp GGGGGC
T ss_pred HHHHHh
Confidence 665544
No 79
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.85 E-value=3.6e-05 Score=70.76 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999887653
No 80
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.85 E-value=3.3e-05 Score=75.44 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 89999999999999999999887653
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.84 E-value=2.6e-05 Score=65.95 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...+.|+|++|+|||||++.+++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 379999999999999999999998765
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=0.00012 Score=79.34 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=85.1
Q ss_pred ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHH
Q 044393 149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 224 (513)
+..+.+++|++.+++.+...+......-+.++|++|+|||++|+.+++....... ..+.+ +.++-
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~---------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM---------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc----------
Confidence 3456678999999999999997766577899999999999999999988733110 11111 11111
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccc-cccC--CCCcEEEEEeCchHHHhh-------
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLET-VGIP--ANCCKILLTTRLQQVCDR------- 294 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-l~~~--~~~~~iivTtr~~~v~~~------- 294 (513)
+....+.........+. .....++.+|++|. ..+... +... .+..++|.+|........
T Consensus 245 -----g~~~~G~~e~~l~~~~~---~~~~~~~~iLfiD~---~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 -----GTKYRGEFEDRLKKVMD---EIRQAGNIILFIDA---AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp -------------CTTHHHHHH---HHHTCCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred -----cccccchHHHHHHHHHH---HHHhcCCEEEEEcC---chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHH
Confidence 11111111111222222 22224778999992 122222 2211 225677777765431110
Q ss_pred cCCcceeecCCCChHhHHHHHHHhcC
Q 044393 295 MGCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
......+.+...+.++..+++.....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 01125689999999999999987654
No 83
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.84 E-value=3.3e-05 Score=71.35 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.++....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 7999999999999999999988764
No 84
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.83 E-value=4.4e-05 Score=71.34 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 89999999999999999999887653
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00046 Score=68.51 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=87.2
Q ss_pred cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+....|-+...+.|...+. . ...+-|.++||+|+|||+||+.+++..... .+.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence 3344566666666555442 1 124679999999999999999999987643 22233222111
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc------cC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG------IP 276 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~------~~ 276 (513)
...+.+...... +.. ......++++++|++.... + +..+. ..
T Consensus 245 -------------~~~Ge~e~~ir~-lF~--~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 -------------KYLGEGPRMVRD-VFR--LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp -------------SSCSHHHHHHHH-HHH--HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred -------------cccchhHHHHHH-HHH--HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 111111111111 111 2223478999999984321 0 11111 11
Q ss_pred CCCcEEEEEeCchH-----HHhhcCCcceeecCCCC-hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 277 ANCCKILLTTRLQQ-----VCDRMGCDTRIKLDALD-QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 277 ~~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
..+..||.||.... +.+.-.....+.+.+++ .++-..+|+.+.......++ -....|++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~--~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE--ADLDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT--CCHHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHHCCCCC
Confidence 22566777887543 22211223567786664 45555666665532211111 11466788888865
No 86
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.82 E-value=4.6e-05 Score=73.86 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 89999999999999999999987654
No 87
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.82 E-value=5.9e-05 Score=73.00 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=68.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeE----------EEEEEcCCC------ChHH---------------
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEV----------GIATVSQDP------DIIN--------------- 220 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~----------~wv~~~~~~------~~~~--------------- 220 (513)
.+++|+|++|+|||||++.++.-..... .++.. -..++.|.+ ++.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 7999999999999999999998765420 01110 012334432 2211
Q ss_pred HHHHHHHHhCCCCC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccc-------cccC--CCCcEEEE
Q 044393 221 VQSELVKWLGWELK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLET-------VGIP--ANCCKILL 284 (513)
Q Consensus 221 ~~~~i~~~l~~~~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-------l~~~--~~~~~iiv 284 (513)
...++++.++.... ..+..+ ..-.+.. .+.. ++-+|+||++.+.+|... +... ..|..||+
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAr--aL~~-~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALAR--ALVT-NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHH--HTTS-CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH--HHHc-CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12233444443211 111111 1222222 4444 677999999998876322 1111 12789999
Q ss_pred EeCchHHHhhcCCcceeec
Q 044393 285 TTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 285 Ttr~~~v~~~~~~~~~~~l 303 (513)
+||+...+..+. .+.+.+
T Consensus 184 vTHd~~~~~~~a-dri~vl 201 (348)
T 3d31_A 184 ITHDQTEARIMA-DRIAVV 201 (348)
T ss_dssp EESCHHHHHHHC-SEEEEE
T ss_pred EeCCHHHHHHhC-CEEEEE
Confidence 999977665543 244444
No 88
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.81 E-value=0.00034 Score=70.63 Aligned_cols=168 Identities=18% Similarity=0.195 Sum_probs=92.2
Q ss_pred cccccchhHHHHHHHHH---HhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393 152 FSSFETTKSACNQITEA---LKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (513)
+..+.|.+..++.+... +... -.+-|.|+|++|+|||+||+.+++..... | +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH-
Confidence 44456666655555443 3221 12458899999999999999999876432 2 22333222111
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------cccccc------CC
Q 044393 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVGI------PA 277 (513)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~~------~~ 277 (513)
..+.........+. ....+.+.+|+||++..... +..+.. ..
T Consensus 89 -------------~~g~~~~~~r~lf~---~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFA---QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp -------------CTTHHHHHHHHHHH---HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred -------------HhcccHHHHHHHHH---HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00111111222222 22234789999999954310 111110 11
Q ss_pred CCcEEEEEeCchHHHhh--c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 278 NCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 278 ~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
.+..||.||+.....+. . .....+.+...+.++-.++++.++......+.. ....|++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 26678888887643221 1 122478888888888888888776532211111 1355888888887
No 89
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.81 E-value=7.5e-05 Score=68.92 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999887653
No 90
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.80 E-value=9.4e-05 Score=69.25 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999887653
No 91
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.79 E-value=4.2e-05 Score=70.79 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.+++|+|++|+|||||++.++..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999985
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.76 E-value=6.1e-05 Score=68.09 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=50.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCC----------CCCCCH---HHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWE----------LKEKDE---EER 241 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~---~~~ 241 (513)
.++.|+|++|+|||||+..++. .. -..++|+......+...+. .+.+.++.. ...... ...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 7999999999999999999998 21 2456677665544544433 333332221 001111 122
Q ss_pred HHHHHHHHHhccCCeEEEEEecCCCccc
Q 044393 242 ADRLRLMFSESKGRKILIILDDVWKELD 269 (513)
Q Consensus 242 ~~~l~~~~~l~~~~~~LlVLDd~~~~~~ 269 (513)
...++ .+...+.-+||+|++....+
T Consensus 95 ~~~~~---~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 95 IGSLK---KTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHH---HHCCTTEEEEEEECCCCCTT
T ss_pred HHHHH---HHhhcCCCEEEEcCcHHHhh
Confidence 33333 33332578999999976643
No 93
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.75 E-value=0.00012 Score=67.40 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=53.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCC----------CCCCHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWEL----------KEKDEEE 240 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~ 240 (513)
.++.|+|++|+|||||+..++....... .-..++|+.....+....+ ..+++.++... ...+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 7999999999999999999988532211 1245677766554444333 33444444321 1122222
Q ss_pred HHH---HHHHHHHhccCCeEEEEEecCCCccc
Q 044393 241 RAD---RLRLMFSESKGRKILIILDDVWKELD 269 (513)
Q Consensus 241 ~~~---~l~~~~~l~~~~~~LlVLDd~~~~~~ 269 (513)
... .+.. .+...+.-+||+|++....+
T Consensus 104 ~~~~~~~~~~--~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 104 QTQLLYQASA--MMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHH--HHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHH--HHhcCCceEEEEeCchHHHH
Confidence 222 2333 22234778999999976543
No 94
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.75 E-value=4.9e-05 Score=69.77 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999887653
No 95
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.75 E-value=4.8e-05 Score=70.90 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 89999999999999999999887653
No 96
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.74 E-value=7.3e-05 Score=72.47 Aligned_cols=29 Identities=41% Similarity=0.731 Sum_probs=25.1
Q ss_pred hcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+ .+++|+|++|+|||||++.++.-...
T Consensus 39 ~~G--e~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 39 REG--EMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp ETT--CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 445 89999999999999999999987653
No 97
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.73 E-value=8.7e-05 Score=70.08 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+++-...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999999999999987654
No 98
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.71 E-value=7.6e-05 Score=64.73 Aligned_cols=21 Identities=43% Similarity=0.417 Sum_probs=19.1
Q ss_pred cEEEEEcCCCChHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVG 195 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~ 195 (513)
.+++|+|++|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 799999999999999999643
No 99
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.71 E-value=0.00011 Score=71.37 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 89999999999999999999987653
No 100
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.70 E-value=5.8e-05 Score=73.73 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 89999999999999999999987654
No 101
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.69 E-value=0.00053 Score=65.40 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=35.6
Q ss_pred ccchhHHHHHHHHHHhc--------------CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 155 FETTKSACNQITEALKK--------------GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56888888877776643 1236788999999999999999998874
No 102
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.68 E-value=0.00012 Score=71.18 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 89999999999999999999987653
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=6.3e-05 Score=68.55 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=50.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc---C-CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHH-
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE---K-IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEE- 239 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~- 239 (513)
.+++|+|++|+|||||++.++...... . .....+|+.-....... -...+.+.++.... .....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSNH 104 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCChHH
Confidence 899999999999999999998854431 1 12345666544333322 23344444433210 11111
Q ss_pred --HHHHHHHHHHH-hc--cCCeEEEEEecCCCc
Q 044393 240 --ERADRLRLMFS-ES--KGRKILIILDDVWKE 267 (513)
Q Consensus 240 --~~~~~l~~~~~-l~--~~~~~LlVLDd~~~~ 267 (513)
.....+...+. .. ..+.-+||||++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11222333111 11 347789999999765
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.67 E-value=5.2e-05 Score=78.29 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=69.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHHHHH--------------HHHhCC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQSEL--------------VKWLGW 231 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~~~i--------------~~~l~~ 231 (513)
.+++|+|++|+|||||++.++....... .+.. ...++.+.. ++.+.+... ++.++.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~-~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL-TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECc-eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999775421 1111 123344432 222222211 111121
Q ss_pred CC------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhc
Q 044393 232 EL------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 232 ~~------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~ 295 (513)
.. ...+- +...-.+.. .+.. ++-+|+||++.+..|.... ... ..|..||++||+...+..+
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAr--aL~~-~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAA--TLLR-DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHH--HHTS-CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 10 01111 222222333 4444 7779999999999875432 111 1278999999998777655
Q ss_pred CCcceeec
Q 044393 296 GCDTRIKL 303 (513)
Q Consensus 296 ~~~~~~~l 303 (513)
. .+.+.+
T Consensus 469 ~-drv~vl 475 (538)
T 1yqt_A 469 S-DRLMVF 475 (538)
T ss_dssp C-SEEEEE
T ss_pred C-CEEEEE
Confidence 3 344444
No 105
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.67 E-value=8.4e-05 Score=77.65 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=71.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHH--------------HHHHHHhCC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQ--------------SELVKWLGW 231 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~--------------~~i~~~l~~ 231 (513)
.+++|+|++|+|||||++.++....... .+.. ...++.|.. ++.+.+ .++++.++.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~-~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL-TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEee-EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999765421 1111 123344432 222221 223334443
Q ss_pred CCC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhc
Q 044393 232 ELK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 232 ~~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~ 295 (513)
... ..+..+ ..-.+.. .+.. ++-+|+||++.+.+|.... ... ..|..||++||+...+..+
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAr--aL~~-~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAA--TLLR-DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHH--HHTS-CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred chHhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 211 112212 2222222 4444 6779999999999875432 111 1378999999998777655
Q ss_pred CCcceeec
Q 044393 296 GCDTRIKL 303 (513)
Q Consensus 296 ~~~~~~~l 303 (513)
. .+.+.+
T Consensus 539 a-drv~vl 545 (607)
T 3bk7_A 539 S-DRLIVF 545 (607)
T ss_dssp C-SEEEEE
T ss_pred C-CEEEEE
Confidence 3 344444
No 106
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.66 E-value=0.00016 Score=67.15 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.++.-..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 8999999999999999999987654
No 107
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.65 E-value=4.2e-05 Score=71.10 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=25.4
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.++.-...
T Consensus 30 i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 30 VNKG--DVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EETT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445 89999999999999999999887653
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=0.00018 Score=62.79 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++|+|++|+|||||++.+++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999988753
No 109
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.64 E-value=8.5e-05 Score=72.15 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 89999999999999999999987653
No 110
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.64 E-value=0.00015 Score=70.87 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 79999999999999999999987653
No 111
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.63 E-value=5.4e-05 Score=70.90 Aligned_cols=26 Identities=46% Similarity=0.414 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.-+.|+|++|+|||+||+.+++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44789999999999999999987653
No 112
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=0.00049 Score=65.77 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=35.9
Q ss_pred ccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 155 FETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++|.+..++.+...+... ....+.|+|++|+||||+|+.+++....
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 457777777777777542 1257999999999999999999998754
No 113
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.0022 Score=68.66 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=83.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
++-|.++||+|+|||+||+.+++..... .+.++.+ ++. ....+.+......... ....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~----------~l~----sk~~gese~~lr~lF~---~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----------EIM----SKLAGESESNLRKAFE---EAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH----------HHH----SSCTTHHHHHHHHHHH---HHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH----------Hhh----cccchHHHHHHHHHHH---HHHH
Confidence 4679999999999999999999887542 2223211 111 1111111122222222 3334
Q ss_pred CCeEEEEEecCCCccc-------------ccccc---cC---CCCcEEEEEeCchHHH-hhc----CCcceeecCCCChH
Q 044393 254 GRKILIILDDVWKELD-------------LETVG---IP---ANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQA 309 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~-------------~~~l~---~~---~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~ 309 (513)
..+++|+||+++.... ...+. .. .++..||.||...+.. ..+ .-...+.+...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 5789999999864311 11111 11 1145566666654322 111 12357889999999
Q ss_pred hHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393 310 EGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA 345 (513)
Q Consensus 310 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 345 (513)
+-.++|+.+........+ -....|++++.|..-|
T Consensus 376 ~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADD--VDLEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCCHH
T ss_pred HHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCCHH
Confidence 999999887653221111 1246688889887643
No 114
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.52 E-value=7.1e-05 Score=77.11 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=68.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHHHH---------------HHHHhC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQSE---------------LVKWLG 230 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~~~---------------i~~~l~ 230 (513)
.+++|+|++|+|||||++.++...+... .+......++++.. ++.+.+.. +++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 7999999999999999999998775431 11111122333322 22222211 111111
Q ss_pred CCC------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc---CCCCcEEEEEeCchHHHhh
Q 044393 231 WEL------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI---PANCCKILLTTRLQQVCDR 294 (513)
Q Consensus 231 ~~~------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~---~~~~~~iivTtr~~~v~~~ 294 (513)
... ...+- +...-.+.. .+.. ++-+|+||++.+.+|.... .. ...|..||++||+...+..
T Consensus 375 l~~~~~~~~~~LSGGq~QRv~iAr--aL~~-~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 375 LHRLLESNVNDLSGGELQKLYIAA--TLAK-EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp GGGCTTSBGGGCCHHHHHHHHHHH--HHHS-CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CHHHhcCChhhCCHHHHHHHHHHH--HHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 110 01111 112222222 4444 6779999999999875432 11 1137899999999887766
Q ss_pred cCCcceeec
Q 044393 295 MGCDTRIKL 303 (513)
Q Consensus 295 ~~~~~~~~l 303 (513)
+. .+.+.+
T Consensus 452 ~a-Dri~vl 459 (538)
T 3ozx_A 452 IA-DRIIVF 459 (538)
T ss_dssp HC-SEEEEE
T ss_pred hC-CEEEEE
Confidence 53 344444
No 115
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.51 E-value=8.5e-05 Score=76.68 Aligned_cols=122 Identities=22% Similarity=0.214 Sum_probs=68.9
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C-----------CCe--------------EEEEEEcCCC------
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I-----------FDE--------------VGIATVSQDP------ 216 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~-----------f~~--------------~~wv~~~~~~------ 216 (513)
+..+ .+++|+|++|+|||||++.++....... . +.. .....+.+..
T Consensus 44 i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 121 (538)
T 1yqt_A 44 VKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKA 121 (538)
T ss_dssp CCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGG
T ss_pred CCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchh
Confidence 3445 8999999999999999999988654311 0 100 0001112211
Q ss_pred ---ChHH---------HHHHHHHHhCCCCCC------CCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc----
Q 044393 217 ---DIIN---------VQSELVKWLGWELKE------KDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV---- 273 (513)
Q Consensus 217 ---~~~~---------~~~~i~~~l~~~~~~------~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l---- 273 (513)
+..+ ...++++.++..... .+. +...-.+.. .+.. ++-+|+||++.+.+|....
T Consensus 122 ~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAr--aL~~-~P~lLlLDEPTs~LD~~~~~~l~ 198 (538)
T 1yqt_A 122 VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAA--ALLR-NATFYFFDEPSSYLDIRQRLNAA 198 (538)
T ss_dssp CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH--HHHS-CCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEECCcccCCHHHHHHHH
Confidence 1111 123556666653211 122 222222333 4444 7779999999999874421
Q ss_pred --cc--CCCCcEEEEEeCchHHHhhc
Q 044393 274 --GI--PANCCKILLTTRLQQVCDRM 295 (513)
Q Consensus 274 --~~--~~~~~~iivTtr~~~v~~~~ 295 (513)
.. ...|..||++||+......+
T Consensus 199 ~~L~~l~~~g~tvi~vsHd~~~~~~~ 224 (538)
T 1yqt_A 199 RAIRRLSEEGKSVLVVEHDLAVLDYL 224 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 11 11388999999998776554
No 116
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.51 E-value=0.00024 Score=77.46 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhH-hhhcCCCCeEEEEEEcCCC-------ChH-----------HHHHHHHHH
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ-LRQEKIFDEVGIATVSQDP-------DII-----------NVQSELVKW 228 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~-~~~~~~f~~~~wv~~~~~~-------~~~-----------~~~~~i~~~ 228 (513)
.+..| .+++|+|++|+|||||++.+++- ............+++.+.. +.. ....++++.
T Consensus 457 ~I~~G--e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 457 RLKRA--RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEETT--CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred EEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 34455 89999999999999999999842 1000000000123333321 111 223445555
Q ss_pred hCCCC-------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCchHHHhh
Q 044393 229 LGWEL-------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQQVCDR 294 (513)
Q Consensus 229 l~~~~-------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~~v~~~ 294 (513)
++... ...+..+ ..-.+.. .+.. ++-+|+||++.+.+|.... ... .|..||++||+......
T Consensus 535 lgL~~~~~~~~~~~LSGGqkQRvaLAr--AL~~-~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 535 FGFTDEMIAMPISALSGGWKMKLALAR--AVLR-NADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDN 610 (986)
T ss_dssp TTCCHHHHHSBGGGCCHHHHHHHHHHH--HHHT-TCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHH
T ss_pred cCCChhhhcCCcccCCHHHHHHHHHHH--HHhc-CCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHH
Confidence 55521 1112211 2222222 3443 6779999999998874321 222 48899999999877655
Q ss_pred c
Q 044393 295 M 295 (513)
Q Consensus 295 ~ 295 (513)
+
T Consensus 611 ~ 611 (986)
T 2iw3_A 611 V 611 (986)
T ss_dssp H
T ss_pred h
Confidence 4
No 117
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00027 Score=73.70 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=70.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCC--CeEEEEEEcCCC------ChHH--------------HHHHHHHHhCCC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF--DEVGIATVSQDP------DIIN--------------VQSELVKWLGWE 232 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~------~~~~--------------~~~~i~~~l~~~ 232 (513)
.+++|+|++|+|||||++.++...+....- ...-..++.+.. ++.+ ....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 689999999999999999999877653211 000112222221 1111 122334444432
Q ss_pred C------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhcC
Q 044393 233 L------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRMG 296 (513)
Q Consensus 233 ~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~~ 296 (513)
. ...+-.+ ..-.+.. .+.. ++-+|+||++.+.+|.... ... ..|..||++||+...+..+.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAr--aL~~-~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVL--ALGI-PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHH--HTTS-CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 1 1112222 2222232 4444 7779999999998874322 111 12889999999987776653
Q ss_pred CcceeecC
Q 044393 297 CDTRIKLD 304 (513)
Q Consensus 297 ~~~~~~l~ 304 (513)
.+.+.+.
T Consensus 536 -Drvivl~ 542 (608)
T 3j16_B 536 -DKVIVFE 542 (608)
T ss_dssp -SEEEECE
T ss_pred -CEEEEEe
Confidence 3455443
No 118
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00026 Score=73.89 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+......
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 89999999999999999999886643
No 119
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.44 E-value=5.6e-05 Score=79.04 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+...+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 89999999999999999999877654
No 120
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.44 E-value=0.0013 Score=62.36 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+..+.++||+|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999884
No 121
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.40 E-value=0.00022 Score=73.43 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.++....
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 8999999999999999999988654
No 122
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.37 E-value=0.00045 Score=65.61 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
++.+..-+..+ .+++|+|++|+|||||++.++......
T Consensus 25 Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 25 INDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45555445556 899999999999999999999887754
No 123
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=0.0024 Score=66.02 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|-+...+.+...+. ......+.++|++|+||||||+.+++....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4455555555433321 123478999999999999999999998753
No 124
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.35 E-value=0.00016 Score=71.12 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=24.5
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+..+ .+++|+|++|+|||||++.++.-..
T Consensus 44 i~~G--e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 44 ISPG--QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp ECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3445 8999999999999999999987543
No 125
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.34 E-value=7.1e-05 Score=78.37 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+-..+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCC
Confidence 89999999999999999999887654
No 126
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.32 E-value=7.7e-05 Score=78.31 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+-.++
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 89999999999999999999887653
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.32 E-value=0.00027 Score=67.52 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhh-hcCCCCeEEEEEE
Q 044393 158 TKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLR-QEKIFDEVGIATV 212 (513)
Q Consensus 158 r~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~ 212 (513)
+...+..+..++... ....+.|+|++|+|||+||..+++... .. .+ .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 444555566666542 137899999999999999999999876 43 22 3444543
No 128
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.31 E-value=0.0023 Score=64.69 Aligned_cols=49 Identities=29% Similarity=0.285 Sum_probs=36.2
Q ss_pred ccccccchhHHHHHHH---HHHhcCC--ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 151 FFSSFETTKSACNQIT---EALKKGS--TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 151 ~~~~~~gr~~~~~~l~---~~l~~~~--~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+..++|.+..++.+. ..+..+. .+-+.++||+|+|||+||+.+++...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3466778887766544 3444442 25789999999999999999998875
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.31 E-value=0.0004 Score=68.59 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=52.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEEE 240 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~ 240 (513)
.++.|+|++|+|||||+..++-..... ..-..++|+.....+.... +..+++.++.... ......
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 799999999999999999776332211 1234577776655554443 3345555554211 111222
Q ss_pred ---HHHHHHHHHHhccCCeEEEEEecCCCcc
Q 044393 241 ---RADRLRLMFSESKGRKILIILDDVWKEL 268 (513)
Q Consensus 241 ---~~~~l~~~~~l~~~~~~LlVLDd~~~~~ 268 (513)
....+.. .+...+.-+||+|.+....
T Consensus 258 ~~~~l~~~~~--~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 258 QLRLLDAAAQ--MMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHHHHHHHHH--HHHHSCEEEEEEETGGGGC
T ss_pred HHHHHHHHHH--HHHhcCCceEEecchhhhC
Confidence 2222222 2223367899999986543
No 130
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.30 E-value=0.00017 Score=75.38 Aligned_cols=29 Identities=45% Similarity=0.682 Sum_probs=24.8
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+..+ .+++|+|++|+|||||++.++....
T Consensus 114 i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 114 VKDG--MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CCTT--SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3445 8999999999999999999987654
No 131
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.30 E-value=0.00014 Score=76.38 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+-..+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 89999999999999999999887654
No 132
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.28 E-value=6.2e-05 Score=73.24 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=59.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH-HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN-VQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+++|+|++|+|||||++.+.+...... ...+ +++.+...... -....+.+... ..........+.. .+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i-~t~ed~~e~~~~~~~~~v~q~~~---~~~~~~~~~~La~--aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHI-LTIEDPIEFVHESKKCLVNQREV---HRDTLGFSEALRS--ALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEE-EEEESSCCSCCCCSSSEEEEEEB---TTTBSCHHHHHHH--HTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCC--CcEE-EEccCcHHhhhhccccceeeeee---ccccCCHHHHHHH--Hhhh
Confidence 6999999999999999999988776531 1111 22222111000 00000000000 0000112234444 4554
Q ss_pred CCeEEEEEecCCCcccccccc-cCCCCcEEEEEeCchHHH
Q 044393 254 GRKILIILDDVWKELDLETVG-IPANCCKILLTTRLQQVC 292 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~~~~l~-~~~~~~~iivTtr~~~v~ 292 (513)
.+=+|++|++.+......+. ....|..||+|||..+..
T Consensus 196 -~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 -DPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred -CcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 77899999998765544422 222377899999987654
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.0025 Score=59.68 Aligned_cols=122 Identities=20% Similarity=0.137 Sum_probs=67.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-hccC
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFS-ESKG 254 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-l~~~ 254 (513)
-+.|+|++|+|||||++.+++..... .+.+....-.+ ....+....+..++. ....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~-----~i~i~g~~l~~------------------~~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLN-----FISVKGPELLN------------------MYVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCE-----EEEEETTTTCS------------------STTHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCC-----EEEEEcHHHHh------------------hhhhHHHHHHHHHHHHHHhc
Confidence 39999999999999999999876532 22332211110 000111112222222 1123
Q ss_pred CeEEEEEecCCCccc---------ccc----cc---cCC---CCcEEEEEeCchHHHhh--c---CCcceeecCCCChHh
Q 044393 255 RKILIILDDVWKELD---------LET----VG---IPA---NCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAE 310 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~---------~~~----l~---~~~---~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e 310 (513)
.++++++|++..... ... +. ... ...-++.+|..+.+.+. . .-...+.+...+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 678999999864311 000 00 000 13446667766544322 1 234678888889999
Q ss_pred HHHHHHHhcC
Q 044393 311 GLDLLREHAG 320 (513)
Q Consensus 311 ~~~lf~~~~~ 320 (513)
-.++|+....
T Consensus 183 r~~il~~~~~ 192 (274)
T 2x8a_A 183 RLAILKTITK 192 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 134
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.26 E-value=0.00036 Score=73.00 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+.+-..+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 89999999999999999999876653
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.19 E-value=0.00042 Score=66.84 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE 240 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (513)
.++.+...+..+ ..++|+|++|+|||||++.+.+..... ...+.+.-........ .. +.++. ..+ ....
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~-~~---~~i~~-~~g-gg~~ 228 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH-HK---NYTQL-FFG-GNIT 228 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS-CS---SEEEE-ECB-TTBC
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc-ch---hEEEE-EeC-CChh
Confidence 456666667777 799999999999999999999887643 2233332111110000 00 00000 000 1112
Q ss_pred HHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCC-cEEEEEeCchH
Q 044393 241 RADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANC-CKILLTTRLQQ 290 (513)
Q Consensus 241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~-~~iivTtr~~~ 290 (513)
....+.. .+.. ++-+|++|++.....++.+.....| ..+|+|||...
T Consensus 229 ~r~~la~--aL~~-~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 229 SADCLKS--CLRM-RPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp HHHHHHH--HTTS-CCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred HHHHHHH--Hhhh-CCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence 2333333 4444 7778999999875443333222223 35888998754
No 136
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.17 E-value=0.00052 Score=74.80 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred HhccCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 250 SESKGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 250 ~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
.+.. ++-+||||++.+.+|..... ... +..||++||+.+....+. .+.+.+
T Consensus 915 AL~~-~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD~e~v~~l~-DrVivL 971 (986)
T 2iw3_A 915 GTWQ-RPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHSAEFTKNLT-EEVWAV 971 (986)
T ss_dssp HHTT-CCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSCHHHHTTTC-CEEECC
T ss_pred HHHh-CCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhC-CEEEEE
Confidence 3444 77799999999988754331 111 568999999987766542 344444
No 137
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.15 E-value=0.0015 Score=62.20 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 155 FETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++|+...+..+...+.. .....|.|+|++|+|||++|+.+++...
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 45777777766666533 2236788999999999999999998653
No 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.0009 Score=72.42 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=77.3
Q ss_pred cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393 154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE 224 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (513)
.++|.+..++.+...+... ....+.++|++|+|||+||+.+++..... -...+.++++......
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~----- 564 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH----- 564 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC-----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc-----
Confidence 4668888887777776421 11269999999999999999999987432 1223444444322110
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc--ccc------CCCCcEEEEEeC
Q 044393 225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET--VGI------PANCCKILLTTR 287 (513)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~--l~~------~~~~~~iivTtr 287 (513)
.. ........++ .....+|+||++..... ++. +.. ...+..||+||.
T Consensus 565 ---------~~-~~~~l~~~~~------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ---------ST-SGGQLTEKVR------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------CC-C---CHHHHH------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------cc-ccchhhHHHH------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 0001111111 12445999999965421 111 101 122678899988
Q ss_pred ch-----------------HHHhhcCCcceeecCCCChHhHHHHHHHhc
Q 044393 288 LQ-----------------QVCDRMGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 288 ~~-----------------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
.. .+...+ ...+.+.+++.++-..++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 31 111222 2578888998888777776543
No 139
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=0.0027 Score=68.89 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=80.0
Q ss_pred cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
+...+|.+..++.|..++.. .....|.|+|++|+||||||+.+++..... | +.++.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--F---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--E---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--E---EEEEch-----
Confidence 34456766666666665531 223679999999999999999998876432 1 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccccC---CCC
Q 044393 219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVGIP---ANC 279 (513)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~~~---~~~ 279 (513)
.+...............+.. .....+.++++|++..... +..+... ..+
T Consensus 273 ---------~l~~~~~g~~~~~l~~vf~~---a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 ---------EIMSKLAGESESNLRKAFEE---AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ---------HHSSSSTTHHHHHHHHHHHH---HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ---------HhhhhhhhhHHHHHHHHHHH---HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 11111111111112222222 2223678999999843211 1111111 115
Q ss_pred cEEEEEeCchHHHh-hc----CCcceeecCCCChHhHHHHHHHhcC
Q 044393 280 CKILLTTRLQQVCD-RM----GCDTRIKLDALDQAEGLDLLREHAG 320 (513)
Q Consensus 280 ~~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (513)
..+|.||....... .+ .....+.+...+.++-.+++...+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 56777777643221 11 1224577888889999999987764
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.13 E-value=0.0003 Score=59.89 Aligned_cols=40 Identities=33% Similarity=0.215 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
|....+..+...+..+ .+++|+|++|+|||||++.++...
T Consensus 18 g~~~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 18 GKKFAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC
Confidence 3333444444444555 899999999999999999999987
No 141
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.11 E-value=0.00078 Score=71.75 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=31.0
Q ss_pred EEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 257 ILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 257 ~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
-+|+||++.+.+|..... ....|..||++||+..++.. +.+.+.+
T Consensus 224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 499999999988744321 11127899999999887653 4455555
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.11 E-value=0.0016 Score=63.10 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=53.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
.++.|+|++|+|||||+..++....... ..++|+.....++.. .++.++.... ..+.++....+..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 7999999999999999999998876432 346677665555543 4555554322 23344444555542
Q ss_pred HHhccCCeEEEEEecCCCc
Q 044393 249 FSESKGRKILIILDDVWKE 267 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.-++|+|.+...
T Consensus 135 --~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 --VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp --HHTSCCSEEEEECTTTC
T ss_pred --hhhcCCCeEEehHhhhh
Confidence 22235568999987543
No 143
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.08 E-value=0.00066 Score=65.99 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=52.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh--hcC-CC-CeEEEEEEcCCCChHHHHHHHHHHhCCCC----------CCCCH--
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR--QEK-IF-DEVGIATVSQDPDIINVQSELVKWLGWEL----------KEKDE-- 238 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~--~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~-- 238 (513)
.++.|+|++|+|||||+..++.... ... .. ..++|++....+.... +..+++.++... .....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 8999999999999999999998762 211 11 2346776554433222 333444333211 01111
Q ss_pred -HHHHHHHHHHHHhc-c--CCeEEEEEecCCCccc
Q 044393 239 -EERADRLRLMFSES-K--GRKILIILDDVWKELD 269 (513)
Q Consensus 239 -~~~~~~l~~~~~l~-~--~~~~LlVLDd~~~~~~ 269 (513)
.+....+..++.-. + .+.-+||+|.+....+
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 12233333321111 0 3678999999987653
No 144
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.06 E-value=0.0022 Score=61.13 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...+|+|+|++|+|||||++.+......
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3479999999999999999999998765
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.02 E-value=0.0021 Score=62.40 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=53.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
.++.|+|++|+|||||+.+++...... -..++|+.....++.. .++.++.... ..+.++....+..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~- 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM- 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH-
Confidence 799999999999999999998776543 2356778776655543 2455554321 1233444444443
Q ss_pred HHhccCCeEEEEEecCCCc
Q 044393 249 FSESKGRKILIILDDVWKE 267 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~~ 267 (513)
.....+.-+||+|.+...
T Consensus 134 -l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 -LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp -HHTTTCCSEEEEECGGGC
T ss_pred -HHhcCCCCEEEEcChHhh
Confidence 222335679999998654
No 146
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.99 E-value=0.0074 Score=61.27 Aligned_cols=144 Identities=24% Similarity=0.209 Sum_probs=77.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhc-c
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSES-K 253 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~-~ 253 (513)
+-+.|+|++|+||||||+.+++..... .+.++.+.-.. .. .......++.++... .
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~-----~i~i~g~~~~~--------------~~----~g~~~~~v~~lfq~a~~ 121 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVP-----FITASGSDFVE--------------MF----VGVGAARVRDLFETAKR 121 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCC-----EEEEEGGGGTS--------------SC----TTHHHHHHHHHTTTSSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEehhHHHH--------------hh----hhhHHHHHHHHHHHHHh
Confidence 348999999999999999999876421 22333221100 00 001122233322222 1
Q ss_pred CCeEEEEEecCCCccc----------------ccccc---cCC--C-CcEEEEEeCchHHHhh-c----CCcceeecCCC
Q 044393 254 GRKILIILDDVWKELD----------------LETVG---IPA--N-CCKILLTTRLQQVCDR-M----GCDTRIKLDAL 306 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~----------------~~~l~---~~~--~-~~~iivTtr~~~v~~~-~----~~~~~~~l~~L 306 (513)
..+.++++||+..... +..+. ... . +..|+.+|..+...+. + .....+.+...
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 2458999999853210 11111 111 1 4456666766554221 1 12357888888
Q ss_pred ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
+.++-.++++.++......++ .....|++.+.|+.
T Consensus 202 d~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred CHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 988888888876642111111 12455777888876
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.99 E-value=0.00064 Score=60.86 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.|...+.. ....+|+|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455566665542 34589999999999999999999998874
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.98 E-value=0.0012 Score=61.97 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++.|+|++|+|||||+..++....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 149
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00049 Score=63.41 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
|....++.+...+..+ .+|+|.|++|+|||||++.+....
T Consensus 10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445666776666666 899999999999999999998865
No 150
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.87 E-value=0.007 Score=57.04 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=55.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHH-HHHHHHH
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEER-ADRLRLM 248 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~-~~~l~~~ 248 (513)
++-|.|++|+|||||+.+++........-..++|++....++.. .++.++...+ ..+.++. ...+..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887766543112456787776666643 3667776432 2233444 3333321
Q ss_pred HHhccCCeEEEEEecCCCc
Q 044393 249 FSESKGRKILIILDDVWKE 267 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~~ 267 (513)
-....++.-|+|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 1134567889999988654
No 151
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.85 E-value=0.0013 Score=58.48 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 158 TKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 158 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
|.+.++.|...+.. ....+|+|+|++|+|||||++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45566777776653 33479999999999999999999987754
No 152
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.83 E-value=0.001 Score=72.68 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVG 195 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~ 195 (513)
..+++|+||+|+||||+++.+.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4899999999999999999983
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.0028 Score=58.10 Aligned_cols=37 Identities=19% Similarity=0.030 Sum_probs=27.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS 213 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 213 (513)
.++.|.|++|+|||||+.+++...... -..++|+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 799999999999999998887665433 2345555543
No 154
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.83 E-value=0.00077 Score=69.57 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHH-HHhcCCccEEEEEcCCCChHHHHHHHH--HhHhhhcCCCCeEEEEEE
Q 044393 160 SACNQITE-ALKKGSTKMVGLHGLGGVGKTTLAKFV--GNQLRQEKIFDEVGIATV 212 (513)
Q Consensus 160 ~~~~~l~~-~l~~~~~~vi~I~G~~G~GKTtLa~~~--~~~~~~~~~f~~~~wv~~ 212 (513)
..++.+.. .+..+ .+++|+|++|+|||||++.+ ..-.... ...+++..
T Consensus 26 ~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g 76 (525)
T 1tf7_A 26 EGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTF 76 (525)
T ss_dssp TTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEES
T ss_pred hhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEE
Confidence 35666665 56666 89999999999999999994 4444422 23555543
No 155
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.81 E-value=0.0041 Score=67.26 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=34.6
Q ss_pred cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3567777777777666421 12379999999999999999999887
No 156
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.79 E-value=0.00057 Score=61.72 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-++.+...+..+ .+++|+|++|+|||||++.+....
T Consensus 12 ~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 345566666666 899999999999999999999876
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.78 E-value=0.0045 Score=58.50 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLGWELK-EKDEEERADRLRLMFSE 251 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~~~l 251 (513)
..+++|+|++|+||||++..++......... .+..+.... .....+.+....+..+.+.. ..+.......+. .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~----~ 179 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE----L 179 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH----H
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH----H
Confidence 3799999999999999999999888753222 234444322 22233334443333443321 122233322222 2
Q ss_pred ccCCeEEEEEecC
Q 044393 252 SKGRKILIILDDV 264 (513)
Q Consensus 252 ~~~~~~LlVLDd~ 264 (513)
.. +.-++|+|-.
T Consensus 180 ~~-~~dlvIiDT~ 191 (296)
T 2px0_A 180 FS-EYDHVFVDTA 191 (296)
T ss_dssp GG-GSSEEEEECC
T ss_pred hc-CCCEEEEeCC
Confidence 23 4558899944
No 158
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.76 E-value=0.0057 Score=59.21 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=54.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHH-
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEE- 239 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~- 239 (513)
.++.|+|++|+|||||+..++....... .-..++|++....++...+. .++..++.... ..+..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~ 201 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEH 201 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHH
Confidence 7999999999999999999987642211 12457788777766655443 34445543210 11111
Q ss_pred --HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 240 --ERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 240 --~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.....+..++.-...+.-+||+|.+...
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2233333322211146779999988543
No 159
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.76 E-value=0.0011 Score=55.42 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 155 FETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++|+...+..+...+.. ....-|.|+|++|+|||++|+.+++...
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46777777777766632 2225678999999999999999988654
No 160
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.75 E-value=0.0048 Score=60.07 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=54.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
.++.|.|++|+||||||..++...... -..++|++....++.. .++.++.... ..+.++....+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~- 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL- 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH-
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH-
Confidence 799999999999999999988776543 2357788877666543 2445554321 2334455555554
Q ss_pred HHhccCCeEEEEEecCCC
Q 044393 249 FSESKGRKILIILDDVWK 266 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~ 266 (513)
....+..-+||+|.+..
T Consensus 147 -l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 -LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp -HHTTTCCSEEEEECTTT
T ss_pred -HHhcCCCCEEEEeChHH
Confidence 22233556999998854
No 161
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.74 E-value=0.00097 Score=63.08 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
+++.|+|++|+||||||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 67889999999999999999886
No 162
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.74 E-value=0.031 Score=53.98 Aligned_cols=158 Identities=12% Similarity=0.011 Sum_probs=94.4
Q ss_pred HHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 044393 167 EALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLR 246 (513)
Q Consensus 167 ~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 246 (513)
..+.+.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++... +.
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~--------------------~~ 69 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSL--------------------CQ 69 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHH--------------------HH
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHH--------------------hc
Confidence 33433345799999999999999999998876543 2432222223333333332222 11
Q ss_pred HHHHhccCCeEEEEEecCCC-c--cccccc----ccCCCCcEEEEEeCc-------hHHHhhcC-CcceeecCCCChHhH
Q 044393 247 LMFSESKGRKILIILDDVWK-E--LDLETV----GIPANCCKILLTTRL-------QQVCDRMG-CDTRIKLDALDQAEG 311 (513)
Q Consensus 247 ~~~~l~~~~~~LlVLDd~~~-~--~~~~~l----~~~~~~~~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~e~ 311 (513)
. ..+. +++-++|+|++.. . .....+ ..+.+++.+|+++.. ..+...+. ....++..+++.++.
T Consensus 70 ~-~plf-~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 70 A-MSLF-ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp H-HHHC-CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred C-cCCc-cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 1 0333 3677889999865 2 222222 233346777766643 23444432 336789999999999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393 312 LDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV 348 (513)
Q Consensus 312 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 348 (513)
...+.+.+...... -..+.+..+++.++|.+..+..
T Consensus 148 ~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 148 PRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHH
Confidence 98888776422211 1256788899999998887654
No 163
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.72 E-value=0.0018 Score=64.72 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred EEEEEecCCCccccccc------c-cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 257 ILIILDDVWKELDLETV------G-IPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 257 ~LlVLDd~~~~~~~~~l------~-~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
-+||||++.+..|.... . ....|..||++||+..++.. +..++.+
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 79999999998773322 1 11137899999999988753 4455555
No 164
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.70 E-value=0.014 Score=55.71 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW 228 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (513)
.++.+..-+..+ .++.|.|.+|+|||||+..++.....+. ..++|++.. .+...+...++..
T Consensus 57 ~LD~~lgGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 344444334445 8999999999999999999987765442 456665543 4555555555543
No 165
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.64 E-value=0.0011 Score=59.16 Aligned_cols=29 Identities=31% Similarity=0.219 Sum_probs=25.4
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.++.. ..
T Consensus 19 i~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 19 IDTN--TIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HHHC--SEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred ccCC--CEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 4566 89999999999999999999987 54
No 166
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.63 E-value=0.0011 Score=59.37 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=24.4
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+..+ .+++|+|++|+|||||++.+.....
T Consensus 17 i~~G--ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVG--RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CC--CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455 8999999999999999999998764
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.0012 Score=58.65 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+.+...+..+ .+|+|+|++|+||||+++.++....
T Consensus 15 ~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CC--CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34455445455 7999999999999999999998774
No 168
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.61 E-value=0.0018 Score=73.94 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.3
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+..+ .+++|+|++|+|||||++.+.+...+
T Consensus 413 i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 413 VKSG--QTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp ECTT--CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445 89999999999999999999877654
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.60 E-value=0.00096 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 79999999999999999999876
No 170
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.60 E-value=0.0034 Score=60.69 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCCChHHHHHHHHHHhCC----CCCCCCHHHH------
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDPDIINVQSELVKWLGW----ELKEKDEEER------ 241 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~------ 241 (513)
..+.++|+|++|+|||||++.+.+..... ..+.++ ++-+++..... .++.+.+.. .....+....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~ 248 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEM 248 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHH
Confidence 34899999999999999999998876543 223333 56666544221 222222211 1111222111
Q ss_pred HHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 242 ADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 242 ~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.-...+.+.- .|+.+||++||+...
T Consensus 249 alt~AEyfrd-~G~dVLil~DslTR~ 273 (422)
T 3ice_A 249 VIEKAKRLVE-HKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHH-TSCEEEEEEECHHHH
T ss_pred HHHHHHHHHh-cCCCEEEEEeCchHH
Confidence 1112232332 469999999998554
No 171
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.60 E-value=0.0057 Score=59.37 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=52.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++.... ..+.++....+..+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 799999999999999999998776543 2357788776666543 2445544321 12334444444432
Q ss_pred HHhccCCeEEEEEecCCC
Q 044393 249 FSESKGRKILIILDDVWK 266 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~ 266 (513)
. ...+.-+||+|.+..
T Consensus 137 ~--~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 137 A--RSGAVDVIVVDSVAA 152 (356)
T ss_dssp H--HHTCCSEEEEECGGG
T ss_pred H--hccCCCEEEEcCHHH
Confidence 1 123556999998754
No 172
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.58 E-value=0.0035 Score=54.79 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=56.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCC---------CCCCCCH-------
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW---------ELKEKDE------- 238 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---------~~~~~~~------- 238 (513)
..|.|++.+|.||||.|--++-+.-..+ ..+.++.+.... ...--..+++.++. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 5677777777999999988877766542 234444433321 11112223333321 0111111
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCCCc-----cc---ccccc-cCCCCcEEEEEeCch
Q 044393 239 EERADRLRLMFSESKGRKILIILDDVWKE-----LD---LETVG-IPANCCKILLTTRLQ 289 (513)
Q Consensus 239 ~~~~~~l~~~~~l~~~~~~LlVLDd~~~~-----~~---~~~l~-~~~~~~~iivTtr~~ 289 (513)
......+.+ .+..++--|||||++... .+ +-.+. .......||+|+|..
T Consensus 106 ~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111222232 344445569999998442 22 22222 223388999999984
No 173
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.57 E-value=0.0032 Score=66.96 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.4
Q ss_pred CeEEEEEecCCCccccccc------c--cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393 255 RKILIILDDVWKELDLETV------G--IPANCCKILLTTRLQQVCDRMGCDTRIKL 303 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l------~--~~~~~~~iivTtr~~~v~~~~~~~~~~~l 303 (513)
++-+|+||++...+|.... . ....|..||++||+..++.. +.+.+.|
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~i~~l 618 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT--ADYIIDL 618 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence 3579999999998763321 1 11128899999999887643 5566666
No 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.57 E-value=0.0028 Score=69.47 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++|.+..+..+...+... ....+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578888888877776431 1247899999999999999999988743
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.57 E-value=0.001 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++++|+|++|+|||||++.+......
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 67999999999999999999988753
No 176
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.56 E-value=0.011 Score=56.72 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=54.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEEE 240 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~ 240 (513)
.++.|+|++|+|||||+.+++....... .-..++|++....++...+. ++++.++.... ..+.++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 7999999999999999999987643210 12357788777666555544 34555544221 112222
Q ss_pred ---HHHHHHHHHHhcc-CCeEEEEEecCCCc
Q 044393 241 ---RADRLRLMFSESK-GRKILIILDDVWKE 267 (513)
Q Consensus 241 ---~~~~l~~~~~l~~-~~~~LlVLDd~~~~ 267 (513)
....+.. .+.. .+.-+||+|.+...
T Consensus 187 ~~~~l~~l~~--~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 187 QIAIVDDLQE--LVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHH--HHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHH--HHHhccCCCEEEEeCcHHH
Confidence 2333333 2222 46779999988543
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999988754
No 178
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.54 E-value=0.0013 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+++|+|++|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 799999999999999999998875
No 179
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.53 E-value=0.0033 Score=68.41 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..+++|+||+|+|||||.+.+...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 479999999999999999988643
No 180
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.52 E-value=0.0008 Score=71.98 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+++|+|++|+|||||++.++.-.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 799999999999999999998764
No 181
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.51 E-value=0.0018 Score=61.26 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...++.+...+.++ .+++|+|++|+|||||++.+.+-.
T Consensus 113 ~~vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 34566666666667 899999999999999999999876
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.51 E-value=0.0015 Score=58.03 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+|+|+|++|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4899999999999999999998876
No 183
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.49 E-value=0.0069 Score=60.44 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=52.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCC-------CCCCCCHH-HH----
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGW-------ELKEKDEE-ER---- 241 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~-~~---- 241 (513)
+.++|+|++|+|||||++.+......+.. ...+++-+.+..+ ..+++.++...-.. .....++. ..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 68999999999999999999887765422 3335555665543 23344444322000 01111111 11
Q ss_pred -HHHHHHHHHhccCCeEEEEEecCCC
Q 044393 242 -ADRLRLMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 242 -~~~l~~~~~l~~~~~~LlVLDd~~~ 266 (513)
.-.+.+.+.-..+++.||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1233443333246999999999954
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.49 E-value=0.027 Score=53.86 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
...+++|+|++|+||||+++.++......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999988764
No 185
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.48 E-value=0.0082 Score=57.56 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=52.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh-----------c-CCC--CeEEEEEEcCCCChHHHHHHHHHHhCCCC-------
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ-----------E-KIF--DEVGIATVSQDPDIINVQSELVKWLGWEL------- 233 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~-----------~-~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------- 233 (513)
.++.|.|++|+||||||.+++..... . +.. ..++|++....++...+. ++++.++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcCE
Confidence 79999999999999999998875321 1 101 456777776666565544 3445554431
Q ss_pred ---CCCCHHH---HHHHHHHHHHhcc-CCeEEEEEecCCC
Q 044393 234 ---KEKDEEE---RADRLRLMFSESK-GRKILIILDDVWK 266 (513)
Q Consensus 234 ---~~~~~~~---~~~~l~~~~~l~~-~~~~LlVLDd~~~ 266 (513)
...+.+. ....+.. .+.. .+.-+||+|.+..
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIED--LIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHH--HHHTTCEEEEEEEECSSH
T ss_pred EEEeCCCHHHHHHHHHHHHH--HHhhccCccEEEEECcHH
Confidence 1122222 2223333 2222 3567999998753
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.45 E-value=0.013 Score=62.68 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK 253 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~ 253 (513)
.+-|.++||+|+|||.||+.+++..... ++.++. .+++ ...-+.+......... ....
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--------~~l~----s~~vGese~~vr~lF~---~Ar~ 568 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--------PELL----TMWFGESEANVREIFD---KARQ 568 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH--------HHHH----TTTCSSCHHHHHHHHH---HHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc--------chhh----ccccchHHHHHHHHHH---HHHH
Confidence 3568899999999999999999987643 222221 1111 1222333333222222 3334
Q ss_pred CCeEEEEEecCCCccc----------------ccccc---cCC-C--CcEEEEEeCchH-----HHhhcCCcceeecCCC
Q 044393 254 GRKILIILDDVWKELD----------------LETVG---IPA-N--CCKILLTTRLQQ-----VCDRMGCDTRIKLDAL 306 (513)
Q Consensus 254 ~~~~LlVLDd~~~~~~----------------~~~l~---~~~-~--~~~iivTtr~~~-----v~~~~~~~~~~~l~~L 306 (513)
..+++|++|+++.... +.+++ ... . +.-||.||..+. +...-.-...+.+...
T Consensus 569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 4789999999864311 11111 111 1 334444555432 2221123467778777
Q ss_pred ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393 307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343 (513)
Q Consensus 307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P 343 (513)
+.++-.++|+.+........+ -....|++.+.|.-
T Consensus 649 d~~~R~~il~~~l~~~~~~~~--~dl~~la~~t~g~S 683 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGFS 683 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------
T ss_pred CHHHHHHHHHHHhcCCCCCCC--CCHHHHHHhCCCCC
Confidence 777777888776643221221 12356777777754
No 187
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.44 E-value=0.0023 Score=56.77 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+|+|+|++|+|||||++.+......
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 389999999999999999999998863
No 188
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.43 E-value=0.0019 Score=67.88 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 147 HIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|..+..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+++....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 44566777889999999999999888 79999999999999999999997754
No 189
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.42 E-value=0.003 Score=69.86 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+++|+||+|.|||||++.+ .-.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 379999999999999999998 543
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.011 Score=56.06 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh--HHHHHHHHHHhCCCC----CCCCHHHH-HHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI--INVQSELVKWLGWEL----KEKDEEER-ADRLR 246 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~----~~~~~~~~-~~~l~ 246 (513)
..+|+|+|++|+||||++..++......+ ..+.++... .+.. .+.+...++..+.+. ........ ...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 37999999999999999999999887542 234444433 2222 222344455554332 11122221 12232
Q ss_pred HHHHhccCCeEEEEEecCCC
Q 044393 247 LMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 247 ~~~~l~~~~~~LlVLDd~~~ 266 (513)
. .+.. +.-++|+|.+-.
T Consensus 181 ~--a~~~-~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 H--ALAR-NKDVVIIDTAGR 197 (306)
T ss_dssp H--HHHT-TCSEEEEEECCC
T ss_pred H--HHhc-CCCEEEEECCCc
Confidence 2 2333 445889998743
No 191
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.40 E-value=0.0025 Score=65.69 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=24.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+++|.|++|+|||||++.++......
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 799999999999999999999877653
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.40 E-value=0.0018 Score=62.49 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=37.9
Q ss_pred ccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 153 SSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 153 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34568888888888888776 6789999999999999999998764
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.40 E-value=0.002 Score=57.68 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|+|++|+|||||++.+.....
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 37999999999999999999998765
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.40 E-value=0.0015 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|+|++|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.37 E-value=0.0031 Score=60.17 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHHhcC----CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 155 FETTKSACNQITEALKKG----STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+++....+..+...+... ...+|+|.|++|+|||||++.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555555554333 234899999999999999999988765
No 196
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0016 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++++|+||+|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6899999999999999999988764
No 197
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.002 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.35 E-value=0.002 Score=58.00 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+||+|+|||||++.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 8999999999999999999998765
No 199
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.34 E-value=0.0066 Score=65.36 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+++|+|++|+|||||++.++.-.
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4799999999999999999988753
No 200
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.0052 Score=56.67 Aligned_cols=24 Identities=50% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
-+.|+|++|+|||||++.+++...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 201
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.31 E-value=0.0056 Score=65.99 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=33.7
Q ss_pred eEEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393 256 KILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 256 ~~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
+-|+|||++.+.+|..... ....|..||++||+.++. .. +.+.+.|.
T Consensus 752 p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~-aDrii~L~ 806 (842)
T 2vf7_A 752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AA-SDWVLDIG 806 (842)
T ss_dssp CEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TT-CSEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-Hh-CCEEEEEC
Confidence 6899999999987643321 112388999999998887 33 56777773
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.31 E-value=0.0012 Score=55.04 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=31.5
Q ss_pred cccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 154 SFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 154 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++|+...+..+...+.. ....-|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 355777777666666532 2225688999999999999999887643
No 203
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.29 E-value=0.0023 Score=62.18 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=37.4
Q ss_pred CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++..+..++|.+.....+..........-+.|+|++|+|||+||+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445666788887666554444322224599999999999999999998765
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.29 E-value=0.0021 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|+||+|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 37999999999999999999988765
No 205
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.29 E-value=0.0064 Score=69.40 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ .+++|+|++|+|||||++.+.+-..+
T Consensus 1050 ~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1050 QGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp SSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred cceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3333334455 89999999999999999999886643
No 206
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.29 E-value=0.0022 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999998764
No 207
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.27 E-value=0.0039 Score=71.33 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ ..|+|+|++|+|||||++.+.+-..+
T Consensus 1096 ~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1096 KGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp EEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred cceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccC
Confidence 3333334455 89999999999999999999876654
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.25 E-value=0.0029 Score=60.00 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+++|+|++|+|||||++.++......
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4799999999999999999999888754
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.25 E-value=0.026 Score=55.96 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|.++|++|+||||++..++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999999888754
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.23 E-value=0.0024 Score=56.02 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
No 211
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.23 E-value=0.0025 Score=56.66 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+|+|+|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 799999999999999999998876
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.21 E-value=0.003 Score=58.56 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh-HHHHHHHHH--HhCCCCCCCC
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI-INVQSELVK--WLGWELKEKD 237 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~--~l~~~~~~~~ 237 (513)
.++.+. +..+ .+++|+|++|+|||||++.+.+..... +...+++. ..+... ..-...++. .++. ..
T Consensus 16 vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl--~~-- 84 (261)
T 2eyu_A 16 KVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITI-EDPIEYVFKHKKSIVNQREVGE--DT-- 84 (261)
T ss_dssp HHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEE-ESSCCSCCCCSSSEEEEEEBTT--TB--
T ss_pred HHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEc-CCcceeecCCcceeeeHHHhCC--CH--
Confidence 455554 4455 899999999999999999999877543 12222221 111000 000000000 0000 00
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCccccccc-ccCCCCcEEEEEeCchHH
Q 044393 238 EEERADRLRLMFSESKGRKILIILDDVWKELDLETV-GIPANCCKILLTTRLQQV 291 (513)
Q Consensus 238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l-~~~~~~~~iivTtr~~~v 291 (513)
......+.. .+.. ++-+|++|++.+......+ .....|..|++|||+.+.
T Consensus 85 -~~l~~~la~--aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 85 -KSFADALRA--ALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp -SCHHHHHHH--HHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred -HHHHHHHHH--HHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH
Confidence 112333443 3333 5668999999854433222 111237789999998654
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.20 E-value=0.0027 Score=58.38 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 157 TTKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 157 gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+....++.+...+.. + .+|+|+|++|+||||+++.+...+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344577777777766 6 7999999999999999999998765
No 214
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0023 Score=56.21 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5789999999999999999998875
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.19 E-value=0.005 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+...+|+|+|++|+|||||++.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34579999999999999999999888765
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.19 E-value=0.0033 Score=63.90 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=37.8
Q ss_pred ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++....
T Consensus 24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 568888888888888777 68999999999999999999987743
No 217
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.16 E-value=0.0029 Score=54.60 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+|+|+|++|+||||+++.+....
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 789999999999999999998765
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.0028 Score=54.56 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=18.9
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFV 194 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~ 194 (513)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.13 E-value=0.0034 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++|+|+||+|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999987754
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.032 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=24.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
+.+|.++|++|+||||++..++..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 4799999999999999999999887654
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.12 E-value=0.003 Score=58.03 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|+|++|+|||||++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 37999999999999999999996653
No 222
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.11 E-value=0.002 Score=60.40 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=25.9
Q ss_pred HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+..+ .+++|+|++|+|||||++.++.....
T Consensus 43 ~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 43 QIAKG--DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEETT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34455 89999999999999999999887653
No 223
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.09 E-value=0.0027 Score=56.37 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988763
No 224
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.08 E-value=0.032 Score=55.90 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV 226 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (513)
.++.+..-+..+ .++.|.|.+|+|||||+.+++.....+ -..++|++.. .+...+...++
T Consensus 186 ~LD~~lgGl~~G--~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCSS--CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHH
T ss_pred HHHhhcCCCCCC--cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHH
Confidence 344444334445 799999999999999999998877654 2345555433 33444444443
No 225
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.08 E-value=0.0052 Score=58.99 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+....|.|+|++|+||||+++.++.....
T Consensus 13 ~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33333444565567999999999999999999887754
No 226
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.08 E-value=0.0097 Score=68.09 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++|+|+.|+|||||++.+.+...+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cEEEEEecCCCcHHHHHHHhcccccc
Confidence 89999999999999999999887654
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.06 E-value=0.0035 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|+|++|+||||+++.+.....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0036 Score=54.67 Aligned_cols=28 Identities=43% Similarity=0.554 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|.|.|++|+||||+++.++......
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999988654
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.03 E-value=0.0066 Score=54.74 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...+.+...+.......|+|+|.+|+|||||+..+......
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 33445555555556689999999999999999999887643
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.02 E-value=0.0036 Score=56.62 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|+|++|+||||+++.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988664
No 231
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0038 Score=59.21 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+++|+|++|+||||+++.++......
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 799999999999999999999887653
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.01 E-value=0.004 Score=56.04 Aligned_cols=108 Identities=14% Similarity=-0.013 Sum_probs=60.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKE---KDEEERADRLRLMFSE 251 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~~~l 251 (513)
.++.|+|+.|+||||++..+..+....+ ..+..+....+. . ....+++.++..... ....+....+.. ..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~--~~ 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS--NS 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS--TT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH--Hh
Confidence 7899999999999999999988886542 223333333221 1 222344444443222 122333444443 23
Q ss_pred ccCCeEEEEEecCCCcc--ccccccc-CCCCcEEEEEeCch
Q 044393 252 SKGRKILIILDDVWKEL--DLETVGI-PANCCKILLTTRLQ 289 (513)
Q Consensus 252 ~~~~~~LlVLDd~~~~~--~~~~l~~-~~~~~~iivTtr~~ 289 (513)
..++.-+||+|++.... .++.+.. ...+..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccc
Confidence 33345699999986431 1222211 11278899998854
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.01 E-value=0.0036 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 234
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.98 E-value=0.0068 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
...+|+|+|++|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347999999999999999999998765
No 235
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.004 Score=54.58 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|.|.|++|+||||+++.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.97 E-value=0.032 Score=53.45 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.++.+..-+..+ .++.|.|.+|+|||||+..++...... -..++|++ -..+...+...++.
T Consensus 35 ~LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fS--lEms~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFS--LEMSAEQLALRALS 95 (338)
T ss_dssp HHHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEE--SSSCHHHHHHHHHH
T ss_pred HHHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe--CCCCHHHHHHHHHH
Confidence 445554444455 799999999999999999998877652 23455544 44555666665544
No 237
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.96 E-value=0.028 Score=61.15 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=33.7
Q ss_pred CeEEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393 255 RKILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKLD 304 (513)
Q Consensus 255 ~~~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~ 304 (513)
.+-|+|||++.+.+|..... ....|..||++||+.++... ++..+.|.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~--ADrIivLg 881 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN--ADHIIDLG 881 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh--CCEEEEec
Confidence 45899999999987743321 11227899999999887653 55677663
No 238
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.93 E-value=0.0035 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|+|++|+|||||++.+.....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 7899999999999999999988764
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.93 E-value=0.0039 Score=55.34 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999988
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.92 E-value=0.0024 Score=58.06 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=16.4
Q ss_pred cEEEEEcCCCChHHHHHHHHH-hHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVG-NQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~-~~~ 198 (513)
.+++|+|++|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999998 664
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.92 E-value=0.0035 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.|+|+||+|+|||||++.+......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56899999999999999999877543
No 242
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.92 E-value=0.0042 Score=57.36 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 243
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.91 E-value=0.0045 Score=54.16 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|.|.|++|+||||+++.+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999987763
No 244
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.90 E-value=0.0055 Score=56.95 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=32.4
Q ss_pred cccccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 152 FSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 152 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+..++|....+..+...+.. .....|.|+|++|+|||+||+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34466777777766655432 1226788999999999999999998764
No 245
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0033 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
++++|+|++|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999999988765
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.89 E-value=0.0049 Score=54.02 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||+++.+...+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999988763
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.87 E-value=0.038 Score=55.66 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (513)
.++.+..-+..+ .++.|.|++|+|||||+..++....... -..++|++. ..+...+...+
T Consensus 192 ~LD~~~gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~--E~s~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSL--EMSAQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEES--SSCHHHHHHHH
T ss_pred HHHhhcCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEEC--CCCHHHHHHHH
Confidence 455555444555 7999999999999999999998876531 124555543 33444544444
No 248
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.87 E-value=0.004 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||+++.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.86 E-value=0.0047 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|+|.|+.|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998775
No 250
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.85 E-value=0.0042 Score=55.23 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 251
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0066 Score=54.53 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
....+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555555568999999999999999999988764
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.82 E-value=0.0051 Score=60.03 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+.+...+..+ ..++|+|++|+|||||++.+.+....
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5566666677 79999999999999999999987754
No 253
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.81 E-value=0.0075 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 7999999999999999999988764
No 254
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.80 E-value=0.0051 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|+|++|+||||+++.++..+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999997664
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.79 E-value=0.0057 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|+|.|++|+||||+++.+.....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987653
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.77 E-value=0.026 Score=53.21 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=47.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCCCC----CCCHHHHHH-HHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWELK----EKDEEERAD-RLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~-~l~~~ 248 (513)
.+++|+|++|+||||++..++......+ ..+.++....... ....+.......+.+.- ...+..... .+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~-- 174 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE-- 174 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH--
Confidence 7999999999999999999999887542 2344444322111 11223344444444321 123333322 222
Q ss_pred HHhccCCeEEEEEecC
Q 044393 249 FSESKGRKILIILDDV 264 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~ 264 (513)
.....+.=++|+|.+
T Consensus 175 -~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 -KARLEARDLILVDTA 189 (295)
T ss_dssp -HHHHHTCCEEEEECC
T ss_pred -HHHhCCCCEEEEeCC
Confidence 221124458899988
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.76 E-value=0.083 Score=52.59 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|.++|.+|+||||++..++..+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999888764
No 258
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.0059 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++|+|.|+.|+||||+++.+...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998765
No 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0055 Score=59.37 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+++|+|++|+||||+++.++......
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 799999999999999999999887653
No 260
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.75 E-value=0.078 Score=52.78 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------------CCCCCH
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWE-------------LKEKDE 238 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------------~~~~~~ 238 (513)
..+.++|.|.+|+|||+|+..+.+..... +-+..+++-+.+... ..++.+++...-... ....+.
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 34899999999999999999998876432 235566777776543 445666666542221 011121
Q ss_pred H------HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 239 E------ERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 239 ~------~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
. ...-.+.+++.-..|+.+||++||+...
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1 1223344444443469999999998543
No 261
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.74 E-value=0.012 Score=54.97 Aligned_cols=24 Identities=50% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
-+.|+|++|+|||||++.+++...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 389999999999999999998775
No 262
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.74 E-value=0.0048 Score=53.52 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|+|++|+||||+++.+.....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999987764
No 263
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.73 E-value=0.0081 Score=59.37 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.+.+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3999999999999999999998543
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.72 E-value=0.019 Score=52.19 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
+.+...+..+ +.+.|.|+.|+||||++..+.-.
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhc
Confidence 4445555566 79999999999999877665443
No 265
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.69 E-value=0.0064 Score=58.69 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..++.+...+.. ..+++|+|++|+|||||++.+.......
T Consensus 43 ~~l~~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 43 DLIDAVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp HHHHHHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 344444433333 4899999999999999999999877653
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.68 E-value=0.007 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 378999999999999999999887
No 267
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.68 E-value=0.0074 Score=58.35 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...++.+ ..+..+ .+++|+|++|+|||||++.+++....
T Consensus 59 ~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 59 VRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3456665 445566 89999999999999999999998764
No 268
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.68 E-value=0.0062 Score=54.22 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+|+|+|++|+||||+++.+....
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999998764
No 269
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0064 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+.....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987653
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.63 E-value=0.01 Score=58.00 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=34.1
Q ss_pred ccchhHHHHHHHHHHh-------------cC--CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 155 FETTKSACNQITEALK-------------KG--STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~-------------~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.+..++.+...+. .. ....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3577777777776662 10 235789999999999999999998874
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0067 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+...+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 7899999999999999999988764
No 272
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.63 E-value=0.0062 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++|+|++|+|||||++.+++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999987643
No 273
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.62 E-value=0.011 Score=50.64 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=24.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+++|+|+.|+|||||+..+...+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4789999999999999999999987654
No 274
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.61 E-value=0.0053 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|+|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999988764
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0074 Score=53.74 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=24.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+|+|.|++|+||||+++.+...+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999887643
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.58 E-value=0.013 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+|.|.|++|+||||+++.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.58 E-value=0.11 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|+|+|.+|+||||++..++..+...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4689999999999999999999877653
No 278
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.58 E-value=0.0078 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999987653
No 279
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.57 E-value=0.071 Score=50.24 Aligned_cols=88 Identities=24% Similarity=0.221 Sum_probs=48.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-CChHHHHHHHHHHhCCCC----CCCCHHHHHHHHHHH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-PDIINVQSELVKWLGWEL----KEKDEEERADRLRLM 248 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~ 248 (513)
..+++++|++|+||||++..++......+ ..+.++..... ......+.......+.+. ...+..........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~- 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE- 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH-
Confidence 37999999999999999999998887542 23444444322 223333444455554432 11233333222222
Q ss_pred HHhccCCeEEEEEecCC
Q 044393 249 FSESKGRKILIILDDVW 265 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~ 265 (513)
.+.....-++|+|-+-
T Consensus 175 -~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 -KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp -HHHHTTCSEEEEECCC
T ss_pred -HHHhCCCCEEEEeCCC
Confidence 2221233488889763
No 280
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.56 E-value=0.0077 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.++|.|.|++|+||||.|+.++..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 48999999999999999999998764
No 281
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.55 E-value=0.0057 Score=60.46 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCccE--EEEEcCCCChHHHHHHHHHhH
Q 044393 162 CNQITEALKKGSTKM--VGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 162 ~~~l~~~l~~~~~~v--i~I~G~~G~GKTtLa~~~~~~ 197 (513)
++.+...+..| .+ ++|+|++|+|||||++.+++.
T Consensus 30 L~~vsl~i~~G--ei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-C--CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCC--CeeEEEEECCCCCCHHHHHHHHhCc
Confidence 77777777777 56 999999999999999999875
No 282
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.53 E-value=0.0064 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.51 E-value=0.008 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..+|+|+|+.|+||||+++.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 478999999999999999999875
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.51 E-value=0.0088 Score=60.09 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+++|+|++|+|||||++.+++.+...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4799999999999999999999988754
No 285
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.50 E-value=0.048 Score=54.74 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
++.+..-+..+ .++.|.|++|+|||||+..++....... -..++|++. ..+...+...++.
T Consensus 190 LD~~lgGl~~G--~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~sl--E~~~~~l~~R~~~ 250 (444)
T 2q6t_A 190 LDQLIGTLGPG--SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSL--EMPAAQLTLRMMC 250 (444)
T ss_dssp HHHHHCCCCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEES--SSCHHHHHHHHHH
T ss_pred hhhhcCCcCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEC--CCCHHHHHHHHHH
Confidence 44444334444 7999999999999999999988775431 123555544 4455566666554
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.49 E-value=0.0093 Score=58.23 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+++|+|++|+|||||++.+++..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 799999999999999999999764
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.47 E-value=0.0088 Score=53.28 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=26.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE 206 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 206 (513)
.+|+|.|+.|+||||+++.+...+... +++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 789999999999999999999887643 3444
No 288
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.47 E-value=0.0084 Score=52.42 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+.....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988754
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.46 E-value=0.0061 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||+++.+...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999987764
No 290
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.45 E-value=0.0096 Score=52.65 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|.|.|++|+||||+++.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 291
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.44 E-value=0.0088 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|.|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 292
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.43 E-value=0.017 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
...+|+|.|++|+||||+++.+...+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999987763
No 293
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.42 E-value=0.0087 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987763
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.42 E-value=0.0088 Score=52.38 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.40 E-value=0.013 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|.|+|++|+||||+++.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988764
No 296
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.40 E-value=0.0098 Score=51.50 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|+|+|++|+||||+++.+...+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999987754
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.39 E-value=0.0097 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+|+|.|+.|+||||+++.+...+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999887643
No 298
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.39 E-value=0.0092 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.38 E-value=0.0096 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||+++.++..+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999988764
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.38 E-value=0.005 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 301
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.37 E-value=0.0087 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
-.|+|+|++|+|||||++.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999987653
No 302
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.37 E-value=0.0097 Score=54.82 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
...+|+|.|+.|+||||+++.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999988654
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.35 E-value=0.017 Score=49.71 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.++++|+|++|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 478999999999999999999988654
No 304
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.34 E-value=0.013 Score=58.61 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
...++.+ ..+..+ .+++|+|++|+|||||++.+++....
T Consensus 145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3466666 445556 89999999999999999999998754
No 305
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.31 E-value=0.053 Score=54.23 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------C-------CCC
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWE-------L-------KEK 236 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~-------~~~ 236 (513)
+..+.++|.|.+|+|||+|+..+.+..... +-+..+++-+.+... ..++..++...-... . ...
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 334899999999999999999998876432 245667777776654 445666665432111 0 111
Q ss_pred CH------HHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 237 DE------EERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 237 ~~------~~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
+. ....-.+.+++.-..|+.+||++||+...
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 11 12233344444442469999999998543
No 306
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.30 E-value=0.0096 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 307
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.26 E-value=0.029 Score=65.64 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=53.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
+.|.|+||+|+|||+||.++....... -..++|+.+...++... ++.++.+.. ..+.+.....+..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~- 1499 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA- 1499 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH-
Confidence 899999999999999999998765543 23466777666665554 455553221 1223344444443
Q ss_pred HHhccCCeEEEEEecCC
Q 044393 249 FSESKGRKILIILDDVW 265 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~ 265 (513)
.....+..+||+|++.
T Consensus 1500 -lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 -LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp -HHHHTCCSEEEESCGG
T ss_pred -HHhcCCCCEEEEcChh
Confidence 2233477899999984
No 308
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.24 E-value=0.01 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||+++.+.....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999988653
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.24 E-value=0.01 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|.|+.|+||||+++.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999876
No 310
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.23 E-value=0.015 Score=51.91 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|.|++|+||||+++.+...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998876
No 311
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.01 Score=59.71 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=27.3
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
+...+..+ .+++|+|++|+|||||++.+++....
T Consensus 131 vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 131 IRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccc
Confidence 33344455 89999999999999999999987643
No 312
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.20 E-value=0.011 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+|+|+|+.|+||||+++.+....
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 313
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.12 Score=51.09 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+++++|++|+||||++..++......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999888754
No 314
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.18 E-value=0.012 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||+++.+...+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988764
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.18 E-value=0.012 Score=54.59 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|.|.|++|+||||+++.+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999987643
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.17 E-value=0.03 Score=55.44 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=54.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhcC-CCC-eEEEEEEcCCC-ChHHHHHHHHHHhCC-------CCCCCCHHH---
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFD-EVGIATVSQDP-DIINVQSELVKWLGW-------ELKEKDEEE--- 240 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 240 (513)
.+.++|.|.+|+|||+|+.++++...... +-+ ..+++-+.+.. ...++..++...-.. .....+...
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 37899999999999999999988765421 111 34555566543 344555655443111 111222211
Q ss_pred ---HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 241 ---RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 241 ---~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.+++.-..|+.+||++||+...
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 123344433433469999999998643
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.16 E-value=0.01 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||+++.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6799999999999999999998765
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.16 E-value=0.011 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|++|+|||||++.+.+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 319
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.15 E-value=0.021 Score=50.12 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC-CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 161 ACNQITEALKKG-STKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 161 ~~~~l~~~l~~~-~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
-+..+..++..- ....+.|+||+|+||||+|..+++....
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345555555432 1247999999999999999999988753
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.13 E-value=0.012 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+|.|.|++|+||||.|+.++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998764
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.09 E-value=0.017 Score=58.82 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..++.+...+..+ ..++|+|++|+|||||++.+.+....
T Consensus 248 ~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 248 GVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3455666666666 67999999999999999999887754
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.08 E-value=0.012 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+.+|+|++|+|||||+..++.-+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4899999999999999999987654
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.03 E-value=0.012 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..++|+|++|+|||||++.+++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 789999999999999999999887643
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.97 E-value=0.015 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
++|+|.|+.|+||||+++.+...+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988764
No 325
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.96 E-value=0.023 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998773
No 326
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.94 E-value=0.0096 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhH
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..+|+|.|++|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 379999999999999999999876
No 327
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.92 E-value=0.015 Score=56.20 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCC
Q 044393 165 ITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQD 215 (513)
Q Consensus 165 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 215 (513)
.++.+.. +..+.++|+|++|+|||+|+..+++..... ..+.+ +++-+.+.
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 3444433 444899999999999999999998876542 12333 34555543
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.89 E-value=0.016 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhHh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.|+|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 329
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.89 E-value=0.18 Score=54.30 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
+.+...+..+ ..+.|+|+.|+||||++..+...
T Consensus 100 ~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 100 DEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 4455555566 78999999999999977766544
No 330
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.87 E-value=0.015 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|.|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988763
No 331
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.87 E-value=0.015 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999976
No 332
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.86 E-value=0.048 Score=62.97 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=54.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC------CCCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL------KEKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 248 (513)
.++.|.|++|+||||||.+++...... -..++|++........ . ++.++... ...+..+....++.+
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 799999999999999999998877643 2246666655554432 1 55555431 223445555555542
Q ss_pred HHhccCCeEEEEEecCCCc
Q 044393 249 FSESKGRKILIILDDVWKE 267 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.-+||+|.+...
T Consensus 806 --v~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 806 --ARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp --HHHTCCSEEEESCSTTC
T ss_pred --HHccCCCEEEEechhhh
Confidence 22235669999998654
No 333
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.82 E-value=0.014 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..|+|+|++|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 334
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.78 E-value=0.017 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||+++.+...+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988764
No 335
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.78 E-value=0.029 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=24.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..|+|.|++|+||||+++.+...+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999998875
No 336
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.76 E-value=0.019 Score=56.19 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=56.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH---HHH--HhCCCCCCCCHHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE---LVK--WLGWELKEKDEEERADRLRLMF 249 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---i~~--~l~~~~~~~~~~~~~~~l~~~~ 249 (513)
.+++|+|++|+|||||++.+.+..... ....+.. ...+... .... ++. .++. ........+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~-~e~~~e~--~~~~~~~~v~Q~~~g~-----~~~~~~~~l~~-- 204 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT--KSYHIIT-IEDPIEY--VFKHKKSIVNQREVGE-----DTKSFADALRA-- 204 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEE-EESSCCS--CCCCSSSEEEEEEBTT-----TBSCSHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEE-ecccHhh--hhccCceEEEeeecCC-----CHHHHHHHHHH--
Confidence 799999999999999999999877643 1122211 1111110 0000 000 0000 00111234444
Q ss_pred HhccCCeEEEEEecCCCcccccc-cccCCCCcEEEEEeCchHH
Q 044393 250 SESKGRKILIILDDVWKELDLET-VGIPANCCKILLTTRLQQV 291 (513)
Q Consensus 250 ~l~~~~~~LlVLDd~~~~~~~~~-l~~~~~~~~iivTtr~~~v 291 (513)
.+.. .+-+|++|++.+...+.. +.....|..|+.|+|..+.
T Consensus 205 ~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSH
T ss_pred Hhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchH
Confidence 4444 566899999986554433 2222237778899997553
No 337
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.76 E-value=0.017 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 338
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.76 E-value=0.035 Score=54.96 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhc--------CCCC-eEEEEEEcCCC-ChHHHHHHHHHHhCC-------CCCC
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE--------KIFD-EVGIATVSQDP-DIINVQSELVKWLGW-------ELKE 235 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~ 235 (513)
..+.++|.|.+|+|||+|+.++++..... .+-+ ..+++-+.+.. ...++..++...-.. ....
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 34889999999999999999998876541 1112 34555566544 344455554332100 0111
Q ss_pred CC-HHH-----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 236 KD-EEE-----RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 236 ~~-~~~-----~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.+ ... ..-.+.+++.-..|+.+||++||+...
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11 111 223344433433469999999998643
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.71 E-value=0.021 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+|+|+|++|+||||++..++......
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 799999999999999999999888754
No 340
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.68 E-value=0.014 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.++++|+|++|+|||||++.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 5799999999999999999998764
No 341
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.62 E-value=0.019 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.||.|+|||||+..++....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 6899999999999999999987653
No 342
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.60 E-value=0.018 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|.|+|+.|+|||||++.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 343
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.60 E-value=0.027 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999999987654
No 344
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.58 E-value=0.015 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 345
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.58 E-value=0.03 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..+++|+|++|+|||||++.+.+....
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 379999999999999999999987754
No 346
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.57 E-value=0.057 Score=48.96 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=26.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD 205 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~ 205 (513)
..|+|.|+.|+||||+++.+...+... .+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN-GID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT-TCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 799999999999999999999988764 355
No 347
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.56 E-value=0.02 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
..+|+|.|+.|+||||+++.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.56 E-value=0.013 Score=55.24 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|.|+.|+||||+++.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999988665
No 349
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.54 E-value=0.021 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|+.|+||||+++.+...+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998864
No 350
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.52 E-value=0.065 Score=54.05 Aligned_cols=44 Identities=34% Similarity=0.477 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
+....+..+...+..++ ..+.|.|++|+||||++..+...+...
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34556677777776654 499999999999999999999888665
No 351
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.52 E-value=0.03 Score=53.07 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
+.|...+. + .+++|+|++|+|||||++.+. ...
T Consensus 157 ~~L~~~l~-G--~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 157 DELVDYLE-G--FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHTT-T--CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHhhcc-C--cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34444433 4 799999999999999999998 544
No 352
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.50 E-value=0.05 Score=51.73 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ 214 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 214 (513)
++.++|+|.|-||+||||.+..++.-+...+ ..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 3458999999999999999999988877642 2355566553
No 353
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.48 E-value=0.019 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|+||.|+|||||+..++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 6899999999999999999998764
No 354
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.48 E-value=0.035 Score=55.23 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhcCC--CCeEEEEEEcCCC-ChHHHHHHHHHHhCCC-------CCCCCHH---
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKI--FDEVGIATVSQDP-DIINVQSELVKWLGWE-------LKEKDEE--- 239 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 239 (513)
..+.++|.|.+|+|||+|+.++++....... -+..+++-+.+.. ...++..++...-... ....+..
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 3488999999999999999999988764221 1244555566544 3455666665431111 1112221
Q ss_pred ---HHHHHHHHHHHhccCCeEEEEEecCCC
Q 044393 240 ---ERADRLRLMFSESKGRKILIILDDVWK 266 (513)
Q Consensus 240 ---~~~~~l~~~~~l~~~~~~LlVLDd~~~ 266 (513)
.....+.+++.-..|+.+||++||+..
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 122334443332246999999999844
No 355
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.45 E-value=0.11 Score=52.90 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=35.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK 227 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (513)
.++.|.|++|+|||||+.+++.....+. -..++|++. ..+...+...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~--E~s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAML--EESVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEES--SSCHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEec--cCCHHHHHHHHHH
Confidence 7999999999999999999988765431 123555544 4455566665543
No 356
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.44 E-value=0.063 Score=52.10 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=29.1
Q ss_pred HHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 163 NQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 163 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+...+. .+...+|+|+|.+|+|||||+..+.......
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444443 3456799999999999999999998876543
No 357
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.44 E-value=0.1 Score=52.27 Aligned_cols=91 Identities=22% Similarity=0.210 Sum_probs=53.2
Q ss_pred CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCe-EEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCCHHH-
Q 044393 172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDE-VGIATVSQDPD-IINVQSELVKWLGWE-------LKEKDEEE- 240 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~- 240 (513)
+..+.++|.|.+|+|||+|| ..+.+... -+. .+++-+.+... ..++.+++...-... ....+...
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 33489999999999999995 57777652 342 35666666543 445555555422111 11122211
Q ss_pred -----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 241 -----RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 241 -----~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.+++.- .|+..||++||+...
T Consensus 236 ~~a~~~a~tiAEyfrd-~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMY-KGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHHHT-TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEEecHHHH
Confidence 12234444444 469999999998543
No 358
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.44 E-value=0.022 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|.||.|+|||||+..++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 36899999999999999999988754
No 359
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.40 E-value=0.025 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..+|+|+|++|+||||+++.+...+.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999988654
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.40 E-value=0.037 Score=56.90 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=24.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+|+|+|++|+|||||++.++......
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhccc
Confidence 799999999999999999999988653
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.39 E-value=0.023 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+.+|+|++|+|||||+..++--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999887644
No 362
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.39 E-value=0.15 Score=51.23 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCccEEEEEcCCCChHHHH-HHHHHhHhhh----cCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC
Q 044393 172 GSTKMVGLHGLGGVGKTTL-AKFVGNQLRQ----EKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD 237 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtL-a~~~~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~ 237 (513)
+..+.++|.|.+|+|||+| +..+.+.... ..+-+ ..+++-+.+... ..++.+++...-... ....+
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 3448999999999999999 4566666652 11233 355666776543 445555554421111 11122
Q ss_pred HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 238 EEE------RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
... ....+.+++.- .|+..||++||+...
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCHHHH
Confidence 111 12233444444 469999999998543
No 363
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.38 E-value=0.022 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..|+|+|++|+|||||+..+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 364
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.36 E-value=0.073 Score=47.43 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=24.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..|+|.|+.|+||||+++.+...+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999988765
No 365
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.36 E-value=0.055 Score=48.54 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.....|+|.|+.|+||||+++.+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999998876
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.35 E-value=0.032 Score=53.87 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
++..+|+|+|++|+|||||+..+.......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 345899999999999999999998876543
No 367
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.30 E-value=0.023 Score=57.14 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=24.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.++.-...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999999999999987765
No 368
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.26 E-value=0.053 Score=52.49 Aligned_cols=28 Identities=36% Similarity=0.625 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|+|+|++|+|||||...+.......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 5799999999999999999999876543
No 369
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.26 E-value=0.027 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998653
No 370
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.24 E-value=0.032 Score=55.50 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred ccchhHHHHHHHHHHhc--------------CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 155 FETTKSACNQITEALKK--------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 155 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|.+...+.|...+.. ...+-|.++|++|+||||+|+.++.....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35666666666555421 12356899999999999999999998754
No 371
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.21 E-value=0.095 Score=52.53 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCe-EEEEEEcCCCC-hHHHHHHHHHHhCC-------CCCCCCHHH-
Q 044393 172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDE-VGIATVSQDPD-IINVQSELVKWLGW-------ELKEKDEEE- 240 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~- 240 (513)
+..+.++|.|.+|+|||+|| ..+.+... .+. .+++-+.+... ..++.+++...-.. .....+...
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 33489999999999999995 57777653 342 35666666543 44455555432111 111122111
Q ss_pred -----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 241 -----RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 241 -----~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.+++.- .|+..||++||+...
T Consensus 249 ~~a~~~a~tiAEyfrd-~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAY-SGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHHT-TTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEeccHHHH
Confidence 12233444444 469999999998543
No 372
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.21 E-value=0.026 Score=49.85 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..+.+.........-.|+|+|.+|+|||||+..+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444444434444689999999999999999888643
No 373
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.15 E-value=0.032 Score=52.78 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+++|+|++|+|||||++.+......
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 69999999999999999999876654
No 374
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.15 E-value=0.1 Score=61.10 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=54.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC------CCCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL------KEKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 248 (513)
.++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++... ...+.++....+..+
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 899999999999999999998877643 2356777666665543 155565532 123445555555542
Q ss_pred HHhccCCeEEEEEecCCC
Q 044393 249 FSESKGRKILIILDDVWK 266 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~ 266 (513)
....+.-+||+|.+..
T Consensus 457 --v~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 457 --ARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp --HHHTCCSEEEESCGGG
T ss_pred --HHhcCCcEEEECCHHH
Confidence 2233566999998754
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.14 E-value=0.084 Score=47.05 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=24.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..|+|.|+.|+||||+++.+...+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999988754
No 376
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.10 E-value=0.3 Score=48.83 Aligned_cols=91 Identities=24% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCCHH--
Q 044393 172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKDEE-- 239 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-- 239 (513)
+..+.++|.|..|+|||+|+ ..+.+... -+ ..+++-+.+... ..++..++...-... ....+..
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 34489999999999999996 56666422 23 345677776543 445555544431111 1112221
Q ss_pred ----HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 240 ----ERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 240 ----~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.....+.+++.- .|+..||++||+...
T Consensus 236 ~~a~~~a~tiAEyfrd-~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEecChHHH
Confidence 112233444443 469999999998653
No 377
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.10 E-value=0.028 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.04 E-value=0.026 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|.|.|++|+||||||..+.....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6799999999999999999987653
No 379
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.00 E-value=0.029 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 380
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.00 E-value=0.075 Score=50.31 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=31.4
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC
Q 044393 171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD 215 (513)
Q Consensus 171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 215 (513)
....++|+|+|-||+||||++..++..+...+ ..+..+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 34458999999999999999999998887642 24555665543
No 381
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.92 E-value=0.028 Score=55.87 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998765
No 382
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.88 E-value=0.014 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|++|+|||||++.+.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999999999887654
No 383
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.82 E-value=0.036 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhHh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.|+++|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 384
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.81 E-value=0.024 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhH
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.|+|+|++|+|||||++.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999998764
No 385
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.77 E-value=0.037 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.068 Score=46.25 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393 164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.+.. +.....-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33344478999999999999999999854
No 387
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.69 E-value=0.22 Score=50.41 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh-HHHHHHHHH----HhCC----------CCCCCC
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI-INVQSELVK----WLGW----------ELKEKD 237 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~----~l~~----------~~~~~~ 237 (513)
..+.++|.|+.|+|||+|+..+++... -+..+++-+.+..+. .+++.++-+ ..+. .....+
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 348999999999999999999877532 346677777766543 344444321 0110 011122
Q ss_pred HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 238 EEE------RADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
... ..-.+.+++.- .|+.+||++|++...
T Consensus 302 ~~~r~~~~~~a~tiAEyfrd-~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 302 VAAREASIYTGITIAEYFRD-MGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCEEEeecchHHH
Confidence 211 12223343333 469999999999654
No 388
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.038 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|.+|+|||||+..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 389
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.04 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..|+|.|+.|+||||+++.+...+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999998874
No 390
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.62 E-value=0.11 Score=46.46 Aligned_cols=38 Identities=24% Similarity=0.105 Sum_probs=28.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ 214 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 214 (513)
-.|.+.|+||+||||++..++.....++ ++ +.++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 3588999999999999999988876552 33 44455544
No 391
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.60 E-value=0.039 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.||.|+|||||+..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998764
No 392
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.59 E-value=0.059 Score=49.59 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++.+.|.+|+|||||+..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 37889999999999999999998776
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.58 E-value=0.2 Score=57.86 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=55.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM 248 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 248 (513)
+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.... ..+.++....+..+
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 799999999999999999998776543 2357777766666543 2555654322 22344555555442
Q ss_pred HHhccCCeEEEEEecCCCc
Q 044393 249 FSESKGRKILIILDDVWKE 267 (513)
Q Consensus 249 ~~l~~~~~~LlVLDd~~~~ 267 (513)
....+.-++|+|-+...
T Consensus 457 --v~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 457 --ARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp --HHHTCCSEEEESCSTTC
T ss_pred --HHhcCCCEEEECCHHHh
Confidence 22335669999998654
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.55 E-value=0.037 Score=47.12 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 579999999999999999987653
No 395
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.54 E-value=0.04 Score=47.55 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhH
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
....|+|+|.+|+|||||+..+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998765
No 396
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.52 E-value=0.019 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+++|+|++|+|||||++.+.....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 7999999999999999999987654
No 397
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.51 E-value=0.04 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998654
No 398
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.51 E-value=0.13 Score=45.18 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=23.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.|+|-|.-|+||||.++.+++.+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999998765
No 399
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.48 E-value=0.04 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999887654
No 400
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.47 E-value=0.049 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999999999987643
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.45 E-value=0.044 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhHh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997654
No 402
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.43 E-value=0.044 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHh
Q 044393 172 GSTKMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 172 ~~~~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.....|+|+|.+|+|||||+..+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999988864
No 403
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.40 E-value=0.043 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 404
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.04 Score=46.65 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 405
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.37 E-value=0.047 Score=46.22 Aligned_cols=24 Identities=38% Similarity=0.256 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999988653
No 406
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.37 E-value=0.046 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998654
No 407
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.36 E-value=0.058 Score=46.87 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 688999999999999997777666543
No 408
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.36 E-value=0.051 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
....|.|+|++|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998764
No 409
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.36 E-value=0.044 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhHh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988654
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.34 E-value=0.039 Score=46.70 Aligned_cols=22 Identities=50% Similarity=0.537 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
-.|+|+|.+|+|||||+..+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 411
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.33 E-value=0.047 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999998887653
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.33 E-value=0.044 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.31 E-value=0.048 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
..|+|+|.+|+|||||+..+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998864
No 414
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.30 E-value=0.045 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
....|+|+|.+|+|||||+..+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999998653
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.30 E-value=0.38 Score=58.35 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 044393 165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADR 244 (513)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 244 (513)
+..++..+ +-+.++||+|+|||++|+.+..... .+ ....++.+...+...+...+-..+.........
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------ 1327 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------ 1327 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------
Confidence 34444555 7889999999999999977765532 12 344566676666665555554443321100000
Q ss_pred HHHHHHhccCCeEEEEEecCCCcc--c---------ccccc------cCCC-------CcEEEEEeCchH------HH-h
Q 044393 245 LRLMFSESKGRKILIILDDVWKEL--D---------LETVG------IPAN-------CCKILLTTRLQQ------VC-D 293 (513)
Q Consensus 245 l~~~~~l~~~~~~LlVLDd~~~~~--~---------~~~l~------~~~~-------~~~iivTtr~~~------v~-~ 293 (513)
+.. -...++++++.+||+.-.. . +.++. .... +..+|.++.... +. .
T Consensus 1328 ~~~--P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1328 TLL--PKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp EEE--EBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ccc--CCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 000 0014688999999963321 0 11111 0000 234555553321 11 1
Q ss_pred hcCCcceeecCCCChHhHHHHHHHhc
Q 044393 294 RMGCDTRIKLDALDQAEGLDLLREHA 319 (513)
Q Consensus 294 ~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (513)
.......+.+...+.++-..+|....
T Consensus 1406 llRrf~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1406 FTRHAAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp HHTTEEEEECCCCTTTHHHHHHHHHH
T ss_pred hhheeeEEEeCCCCHHHHHHHHHHHH
Confidence 11223568888888888888887654
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.27 E-value=0.046 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988643
No 417
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.27 E-value=0.11 Score=47.70 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcC-C-ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 160 SACNQITEALKKG-S-TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 160 ~~~~~l~~~l~~~-~-~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.....+..++... . ...|.++||+|+|||++|..+++..
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445566777653 2 3579999999999999999999864
No 418
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.26 E-value=0.049 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 419
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.25 E-value=0.046 Score=46.68 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997653
No 420
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.21 E-value=0.051 Score=46.55 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999987654
No 421
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.18 E-value=0.049 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 468999999999999999987653
No 422
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.17 E-value=0.088 Score=53.39 Aligned_cols=44 Identities=11% Similarity=-0.015 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 157 TTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 157 gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+.+..+.+..... .....+|.+.|++|+||||+++.+...+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34445555555442 223478999999999999999999999874
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.16 E-value=0.055 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
..++|.|++|+||||+++.+...+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 424
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.15 E-value=0.038 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..+|+|+|++|+||||++..++.....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999887644
No 425
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.14 E-value=0.038 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.175 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.|+|+|++|+|||||++.+++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999987653
No 426
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.13 E-value=0.049 Score=45.91 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 36899999999999999988653
No 427
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.12 E-value=0.12 Score=49.81 Aligned_cols=44 Identities=32% Similarity=0.374 Sum_probs=31.7
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhh--hcCCCCeEEEEEEcC
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR--QEKIFDEVGIATVSQ 214 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~ 214 (513)
+.+...+++.+.|.||+||||+|..++.... .. -..+..+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~ 58 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDP 58 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCS
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCC
Confidence 3455558999999999999999999988876 33 23344555543
No 428
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.10 E-value=0.054 Score=46.34 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|..|+|||||+..+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998763
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.10 E-value=0.054 Score=47.31 Aligned_cols=23 Identities=43% Similarity=0.471 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 430
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.09 E-value=0.057 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||+..+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 689999999999999999998764
No 431
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.08 E-value=0.051 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 432
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.03 E-value=0.13 Score=49.20 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=32.4
Q ss_pred HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC
Q 044393 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD 215 (513)
Q Consensus 169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 215 (513)
+.+....++.+.|.||+||||+|..++...... -..+..+.....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~ 55 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPA 55 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSS
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCC
Confidence 344445788999999999999999999887654 234555555533
No 433
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.00 E-value=0.058 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999997643
No 434
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.95 E-value=0.05 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhHh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.|+|+|.+|+|||||+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999988653
No 435
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.91 E-value=0.052 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3689999999999999999998753
No 436
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.91 E-value=0.055 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 579999999999999999887654
No 437
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.89 E-value=0.057 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+.+|+|++|+||||+...++.-+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999998876554
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.88 E-value=0.051 Score=48.55 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 439
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.85 E-value=0.056 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998654
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.85 E-value=0.062 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998754
No 441
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.85 E-value=0.092 Score=52.64 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=50.6
Q ss_pred ccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC------
Q 044393 174 TKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD------ 237 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~------ 237 (513)
.+.++|.|.+|+|||+|| ..+.+... .+ ..+++-+.+... ..++.+++...-... ....+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 488999999999999995 57777653 23 345666665543 334444443211000 01111
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393 238 EEERADRLRLMFSESKGRKILIILDDVWKE 267 (513)
Q Consensus 238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~ 267 (513)
.......+.+++.- .|+..||++||+...
T Consensus 239 a~~~a~tiAEyfrd-~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 239 APYTGAALAEYFMY-RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEEecHHHH
Confidence 12223334444444 469999999998543
No 442
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.83 E-value=0.057 Score=46.98 Aligned_cols=24 Identities=38% Similarity=0.295 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999988754
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.83 E-value=0.044 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+++|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999988753
No 444
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.81 E-value=0.058 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998643
No 445
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.81 E-value=0.056 Score=48.66 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
..|+|.|+.|+||||+++.+...+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999988654
No 446
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.80 E-value=0.064 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|..|+|||||+..+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 447
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.79 E-value=0.06 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
-.|+|+|.+|+|||||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999999999977766543
No 448
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.79 E-value=0.041 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
..|+|+|.+|+|||||+..+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998875
No 449
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.77 E-value=0.064 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999998654
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.73 E-value=0.037 Score=51.20 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
...|+|.|+.|+||||+++.+...+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 37999999999999999999988763
No 451
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.71 E-value=0.066 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999998653
No 452
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.07 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 579999999999999999998765
No 453
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.69 E-value=0.46 Score=48.24 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD 215 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 215 (513)
..+.++|.|..|+|||+|+.++++... -+..+++-+.+.
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER 269 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGER 269 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred CCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 348999999999999999999987643 345667767665
No 454
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.68 E-value=0.046 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987643
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.67 E-value=0.085 Score=47.98 Aligned_cols=48 Identities=25% Similarity=0.160 Sum_probs=30.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (513)
.++.|.|++|+|||+||.+++.....+. -..+++++ -..+...+...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s--~E~~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVT--LEERARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEE--SSSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeec--ccCCHHHHHHHH
Confidence 7999999999999999998765432221 12344443 334444444443
No 456
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.63 E-value=0.052 Score=47.55 Aligned_cols=23 Identities=48% Similarity=0.505 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
.-.|+|+|.+|+|||||+..+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999853
No 457
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.63 E-value=0.064 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 579999999999999999998654
No 458
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.63 E-value=0.064 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999887643
No 459
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.62 E-value=0.069 Score=45.79 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998543
No 460
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.064 Score=45.86 Aligned_cols=24 Identities=38% Similarity=0.264 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999987654
No 461
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.60 E-value=0.063 Score=48.74 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQLR 199 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~ 199 (513)
....|+|+|.+|+|||||+..+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 346899999999999999999987543
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.59 E-value=0.012 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQE 201 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~ 201 (513)
.+++|+|++|+|||||++.++.-....
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC
Confidence 356799999999999999999887654
No 463
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.58 E-value=0.065 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988764
No 464
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.57 E-value=0.075 Score=46.90 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
.+|+|.|+.|+||||+++.++..+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 68999999999999999999998763
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.07 Score=47.00 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 578999999999999999987653
No 466
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.54 E-value=0.072 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988654
No 467
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.52 E-value=0.11 Score=51.88 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHhc-----------CCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 157 TTKSACNQITEALKK-----------GSTKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 157 gr~~~~~~l~~~l~~-----------~~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
|-+..++.+...+.. .+...|+|+|++|+|||||++.+.+..
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 556667777666631 113489999999999999999998764
No 468
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.50 E-value=0.066 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
...|+|+|.+|+|||||+..+.+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3579999999999999999987654
No 469
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.066 Score=46.73 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3679999999999999999998753
No 470
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.47 E-value=0.073 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998753
No 471
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.46 E-value=0.069 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+.+|+|++|+|||||+..++.-.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999886543
No 472
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.46 E-value=0.073 Score=46.80 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999987754
No 473
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.45 E-value=0.065 Score=49.77 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998754
No 474
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.43 E-value=0.07 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999998654
No 475
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.075 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|..|+|||||+..+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998654
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.42 E-value=0.074 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.41 E-value=0.075 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998764
No 478
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.40 E-value=0.075 Score=46.62 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3679999999999999999998754
No 479
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.40 E-value=0.16 Score=46.14 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393 176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI 218 (513)
Q Consensus 176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 218 (513)
.|+|.|.||+||||++..++..+...+ ..+..+......+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l 42 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence 467799999999999999999887653 34666666554443
No 480
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.39 E-value=1.1 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||...+.+..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998764
No 481
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.38 E-value=0.071 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999988654
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.37 E-value=0.16 Score=46.92 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=28.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ 214 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 214 (513)
++|+|.|.||+||||++..++..+...+ ..+..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 5788899999999999999998887542 2455565553
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.35 E-value=0.074 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
.-|.|.|++|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67899999999999999998774
No 484
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.31 E-value=0.073 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999988653
No 485
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.29 E-value=0.074 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998754
No 486
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.28 E-value=0.21 Score=52.76 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393 160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL 225 (513)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (513)
...+.+...+... .+..|.||+|+|||+.+..+....-.. ...+.++...+..+..+...+
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHH
Confidence 3445566666655 688999999999997665555444332 124555555544444554444
No 487
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.27 E-value=0.073 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhH
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQ 197 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~ 197 (513)
-.|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 57999999999999999999864
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.24 E-value=0.071 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999988654
No 489
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.24 E-value=0.072 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+.+|+|++|+|||||...++.-.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 589999999999999999998643
No 490
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.21 E-value=0.079 Score=47.16 Aligned_cols=22 Identities=45% Similarity=0.515 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGN 196 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~ 196 (513)
-.|+|+|.+|+|||||+..+.+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 491
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.19 E-value=0.084 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|..|+|||||+..+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998754
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.18 E-value=0.093 Score=46.79 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=24.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ 200 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~~~ 200 (513)
..|++.|+.|+||||+++.+...+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 78999999999999999999998864
No 493
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.17 E-value=0.069 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 578999999999999999987543
No 494
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.15 E-value=0.073 Score=45.92 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 173 STKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 173 ~~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
..-.|+|+|.+|+|||||+..+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 495
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.13 E-value=0.086 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|..|+|||||+..+.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 679999999999999999987653
No 496
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.09 E-value=0.079 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999987654
No 497
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.07 E-value=0.077 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.+.+|+|++|+|||||...++.-.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999887554
No 498
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.05 E-value=0.08 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999776643
No 499
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.04 E-value=0.089 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393 174 TKMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 174 ~~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3689999999999999999997653
No 500
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.01 E-value=0.074 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhHh
Q 044393 175 KMVGLHGLGGVGKTTLAKFVGNQL 198 (513)
Q Consensus 175 ~vi~I~G~~G~GKTtLa~~~~~~~ 198 (513)
-.|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999987653
Done!