BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044395
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
           Human Rhinovirus 16
 pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
           Human Rhinovirus 16
 pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
           Human Rhinovirus 16
 pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
           Human Rhinovirus 16
          Length = 460

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 225 KTVKKIRIIAVHTPISVILQPQTFASVF------AVLIGVIPGLK 263
           K VK + + ++HTP    LQP  F  +F      AVL    P LK
Sbjct: 7   KHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLK 51


>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
           Human Rhinovirus Serotype 16
 pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
           Human Rhinovirus Serotype 16
          Length = 460

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 225 KTVKKIRIIAVHTPISVILQPQTFASVF------AVLIGVIPGLK 263
           K VK + + ++HTP    LQP  F  +F      AVL    P LK
Sbjct: 7   KHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLK 51


>pdb|3FRP|G Chain G, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
           C3- And C5 Convertase Cvfbb
 pdb|3HRZ|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
 pdb|3HS0|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
 pdb|3HS0|G Chain G, Cobra Venom Factor (Cvf) In Complex With Human Factor B
          Length = 252

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 274 GFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRT 312
           GF+ DS DI++ +  P + L L   LTE PN   +  +T
Sbjct: 6   GFIADS-DIISRSDFPKSWLWLTKDLTEEPNSQGISSKT 43


>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
          Length = 1642

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 274 GFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRT 312
           GF+ DS DI++ +  P + L L   LTE PN   +  +T
Sbjct: 738 GFIADS-DIISRSDFPKSWLWLTKDLTEEPNSQGISSKT 775


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,297,725
Number of Sequences: 62578
Number of extensions: 365394
Number of successful extensions: 880
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 6
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)