Query 044395
Match_columns 408
No_of_seqs 117 out of 310
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1.4E-94 3.1E-99 699.6 21.3 377 11-405 7-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.6E-50 3.6E-55 409.4 27.7 368 15-397 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 8.9E-30 1.9E-34 252.0 24.0 304 12-402 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 1.1E-28 2.5E-33 244.9 23.9 307 12-399 3-319 (321)
5 PRK09903 putative transporter 100.0 1.7E-26 3.7E-31 228.8 26.2 298 11-399 4-309 (314)
6 TIGR00841 bass bile acid trans 97.5 0.00038 8.1E-09 68.5 8.8 111 286-403 12-123 (286)
7 COG0385 Predicted Na+-dependen 94.9 0.14 3E-06 51.0 9.2 111 285-402 41-152 (319)
8 TIGR00841 bass bile acid trans 94.9 0.34 7.4E-06 47.6 11.9 123 19-149 140-273 (286)
9 PF01758 SBF: Sodium Bile acid 94.7 0.12 2.6E-06 47.4 7.7 109 288-402 4-113 (187)
10 PF13593 DUF4137: SBF-like CPA 93.6 0.63 1.4E-05 46.4 10.6 142 247-401 4-147 (313)
11 TIGR00832 acr3 arsenical-resis 92.9 1.4 3.1E-05 44.2 12.1 139 247-402 13-158 (328)
12 COG0385 Predicted Na+-dependen 88.2 1.9 4E-05 43.1 7.7 103 11-122 158-267 (319)
13 TIGR00832 acr3 arsenical-resis 87.2 1 2.3E-05 45.1 5.4 101 21-122 183-290 (328)
14 PF05684 DUF819: Protein of un 85.3 7.4 0.00016 39.9 10.5 75 22-99 28-102 (378)
15 PF13593 DUF4137: SBF-like CPA 66.0 84 0.0018 31.3 11.6 110 17-132 162-279 (313)
16 TIGR00783 ccs citrate carrier 60.7 30 0.00066 35.1 7.3 101 23-125 208-315 (347)
17 COG5058 LAG1 Protein transport 60.2 81 0.0018 31.7 9.9 132 18-159 202-370 (395)
18 PRK11339 abgT putative aminobe 54.8 22 0.00049 37.8 5.5 72 18-91 89-160 (508)
19 PRK12460 2-keto-3-deoxyglucona 47.7 77 0.0017 31.7 7.6 102 19-129 166-268 (312)
20 TIGR03802 Asp_Ala_antiprt aspa 47.1 74 0.0016 34.5 8.1 104 15-127 8-136 (562)
21 PF03390 2HCT: 2-hydroxycarbox 45.2 85 0.0018 32.7 7.8 113 16-133 50-179 (414)
22 TIGR00819 ydaH p-Aminobenzoyl- 41.7 47 0.001 35.6 5.4 70 20-91 87-156 (513)
23 KOG2262 Sexual differentiation 38.1 7.3 0.00016 42.4 -1.2 89 63-159 432-535 (761)
24 COG0475 KefB Kef-type K+ trans 36.8 1.3E+02 0.0028 31.0 7.7 79 26-107 250-329 (397)
25 PF05684 DUF819: Protein of un 34.3 2.5E+02 0.0054 28.9 9.2 101 20-131 241-342 (378)
26 TIGR00783 ccs citrate carrier 29.9 3.5E+02 0.0075 27.6 9.2 94 36-132 5-109 (347)
27 PF03390 2HCT: 2-hydroxycarbox 29.8 1.1E+02 0.0024 31.9 5.7 89 36-124 286-381 (414)
28 PRK05326 potassium/proton anti 29.5 2.3E+02 0.0051 30.4 8.5 100 24-129 249-350 (562)
29 PF03956 DUF340: Membrane prot 28.9 62 0.0013 30.0 3.5 92 25-121 4-97 (191)
30 COG3763 Uncharacterized protei 28.9 94 0.002 24.1 3.8 25 76-100 2-26 (71)
31 PRK11677 hypothetical protein; 28.8 64 0.0014 28.2 3.3 22 84-105 6-27 (134)
32 PRK04972 putative transporter; 28.4 1.9E+02 0.004 31.4 7.5 142 18-173 13-199 (558)
33 PF03601 Cons_hypoth698: Conse 28.2 3.1E+02 0.0067 27.3 8.5 64 241-315 24-88 (305)
34 TIGR03082 Gneg_AbrB_dup membra 27.2 1.5E+02 0.0032 26.3 5.5 47 60-106 55-105 (156)
35 PRK05274 2-keto-3-deoxyglucona 26.9 64 0.0014 32.5 3.4 94 20-121 174-268 (326)
36 PF09964 DUF2198: Uncharacteri 26.2 1.3E+02 0.0029 23.5 4.3 16 85-100 50-65 (74)
37 COG4129 Predicted membrane pro 25.4 1.8E+02 0.004 29.3 6.4 98 7-106 45-151 (332)
38 COG2323 Predicted membrane pro 25.1 2E+02 0.0044 27.3 6.3 79 19-104 8-86 (224)
39 PF03601 Cons_hypoth698: Conse 25.0 72 0.0016 31.7 3.4 47 65-111 69-117 (305)
40 PF06305 DUF1049: Protein of u 24.2 1.1E+02 0.0024 22.6 3.6 25 78-102 18-42 (68)
41 COG2978 AbgT Putative p-aminob 23.3 2.3E+02 0.0051 30.0 6.7 66 24-91 96-161 (516)
42 PF06295 DUF1043: Protein of u 23.1 81 0.0018 27.2 2.9 22 84-105 2-23 (128)
43 PF06522 B12D: NADH-ubiquinone 22.5 1.1E+02 0.0023 23.7 3.2 28 79-106 6-33 (73)
44 PF05145 AmoA: Putative ammoni 22.2 1.8E+02 0.0038 29.1 5.6 47 60-106 33-83 (318)
45 PRK03818 putative transporter; 22.2 2.4E+02 0.0052 30.5 6.9 73 37-111 50-124 (552)
46 COG5505 Predicted integral mem 21.9 8.4E+02 0.018 24.7 10.3 91 36-132 47-142 (384)
47 PF03812 KdgT: 2-keto-3-deoxyg 21.0 2.9E+02 0.0062 27.7 6.6 109 16-132 168-277 (314)
48 PF03806 ABG_transport: AbgT p 20.9 74 0.0016 33.9 2.6 72 18-91 79-150 (502)
49 PLN03159 cation/H(+) antiporte 20.7 2.5E+02 0.0055 31.9 7.0 64 43-107 314-380 (832)
50 PRK01844 hypothetical protein; 20.5 1.7E+02 0.0036 22.9 3.8 25 77-101 3-27 (72)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-94 Score=699.63 Aligned_cols=377 Identities=38% Similarity=0.689 Sum_probs=324.0
Q ss_pred HHHHhh--hhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHH
Q 044395 11 DVFSAV--LPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVST 88 (408)
Q Consensus 11 ~i~~A~--~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~ 88 (408)
+...|. +|++||++++.+||++|+|+.|++++|+||.+|++||++|+|||+|+|+|+++|+||+.+||+||+|..+++
T Consensus 7 ~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~ 86 (408)
T KOG2722|consen 7 LLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTF 86 (408)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHH
Confidence 445555 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhh
Q 044395 89 TFGLILGYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW-----------------IAYVSFSQWIQVILVYTL 151 (408)
Q Consensus 89 ~~g~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~-----------------~aY~~~~~~v~~i~~w~~ 151 (408)
++|.++||+++|++|+|+++|||+++||+|||+||||++++.|+| ++|++++|++|++++|||
T Consensus 87 ~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty 166 (408)
T KOG2722|consen 87 IIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTY 166 (408)
T ss_pred HHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccccCCCcc-CCCCchhhhhhhh---hc-cc-cCCCCCCCCCCccccccccccccccccccccCCCCCCCCccccCCcc
Q 044395 152 VYHMMEPPLA-YNYDTEEEEEEEI---NE-IE-EQPVENSLSRPLLVEADFISNKYSNFESMKDRDSNSPKSTKCMAEPK 225 (408)
Q Consensus 152 g~~ll~~~~~-~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (408)
+||++.++.. .+.+..+++.|.. .. .+ |.+.+++..+.+..+ ..+ ++ .....++++
T Consensus 167 ~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~------~en------~~------~~~~g~~~~ 228 (408)
T KOG2722|consen 167 VYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLAS------KEN------RN------NQVVGREGK 228 (408)
T ss_pred EeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccc------ccc------CC------Cceeecccc
Confidence 9999988753 1111111111100 00 00 000111111111111 000 00 111113334
Q ss_pred chhhheehhhccCcccccChhHHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCC
Q 044395 226 TVKKIRIIAVHTPISVILQPQTFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNE 305 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~Pp~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~ 305 (408)
.+++.+....+..++++++||++|+++|+++|.|||||+++|++++|+++++|+++++|+++|||++++|||||.+|+++
T Consensus 229 ~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~s 308 (408)
T KOG2722|consen 229 VKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRS 308 (408)
T ss_pred ceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchh
Confidence 44444555556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHH
Q 044395 306 SNLGIRTTVGIIIARLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQ 385 (408)
Q Consensus 306 ~~~~~~~iv~i~~~RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~ 385 (408)
++++.++++++++.||+++|..|++++..|+|+|.++.|||+|+||++||+++|||||++++||++|.+|+|||+++||+
T Consensus 309 s~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~ 388 (408)
T KOG2722|consen 309 SALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWT 388 (408)
T ss_pred cccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 044395 386 HVFAIFSLAIYLIIYFKLLL 405 (408)
Q Consensus 386 Y~~~~~~l~~~~~~~l~~~~ 405 (408)
|+++.+++++|+++|+|++.
T Consensus 389 y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 389 YAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHhhHHHHHHHHHHHhC
Confidence 99999999999999999863
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.6e-50 Score=409.42 Aligned_cols=368 Identities=32% Similarity=0.559 Sum_probs=283.1
Q ss_pred hhhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHH
Q 044395 15 AVLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFGLIL 94 (408)
Q Consensus 15 A~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g~~~ 94 (408)
++++++++++++++||+++ |+|++++|.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH----HHHHHHHHHHHHHhhhhhcccccCCCccCCCCchhhh
Q 044395 95 GYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW----IAYVSFSQWIQVILVYTLVYHMMEPPLAYNYDTEEEE 170 (408)
Q Consensus 95 g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~----~aY~~~~~~v~~i~~w~~g~~ll~~~~~~~~~~~~~~ 170 (408)
+|++.|++|.|+++++....+|+|+|++++|++++++++ .+|++++..+++++.|++|+.+++..+++.+..++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 159 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEP 159 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccc
Confidence 999999999999999999999999999999999999999 9999999999999999999999987654221111111
Q ss_pred --hhhhhccccCCCC--CCCCCCccccccccccccc--ccccccc---CCCCCC---CCccccCCccchhhheehhhccC
Q 044395 171 --EEEINEIEEQPVE--NSLSRPLLVEADFISNKYS--NFESMKD---RDSNSP---KSTKCMAEPKTVKKIRIIAVHTP 238 (408)
Q Consensus 171 --~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~--~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
.++..+.+++.++ .+++.+...+.+ ..++.+ ......+ ++..+. ++..+..+.+.+++.+....+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (385)
T PF03547_consen 160 SSAESIDSEQEDSDEMSLDGSSPSSTEEE-IDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI 238 (385)
T ss_pred cccccccccccCCccccCCcccccccccc-cccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence 0000000000000 000000000000 000000 0000000 000000 00000001111111111111122
Q ss_pred cccccChhHHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCCCCCCchHHHHHHH
Q 044395 239 ISVILQPQTFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRTTVGIII 318 (408)
Q Consensus 239 ~~~~~~Pp~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~~~~~~~~iv~i~~ 318 (408)
.+.++|||++|+++|++++++|++++++++ .+++++++++|++++|++++++|++|+++++..+.+++.....++
T Consensus 239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~ 313 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVL 313 (385)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHH
Confidence 578899999999999999999999999986 789999999999999999999999999987677788888888899
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 319 ARLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYL 397 (408)
Q Consensus 319 ~RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~ 397 (408)
.|++++|++++++++.+. . |+....+++++.++|||++..++|+.++.++++++..++|+|+++.+++|+|+
T Consensus 314 ~rlii~P~i~~~~~~~~~------l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 314 VRLIILPLIGIGIVFLLG------L-DGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999998543 2 56678899999999999999999999999999999999999999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.97 E-value=8.9e-30 Score=251.98 Aligned_cols=304 Identities=18% Similarity=0.281 Sum_probs=255.8
Q ss_pred HHHhhhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHH
Q 044395 12 VFSAVLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFG 91 (408)
Q Consensus 12 i~~A~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g 91 (408)
++....++++++++++.||+++ |.|.+|+|..|.+|++++++++|||+|++++++-..++ +++..+++..+.....+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4566788999999999999999 99999999999999999999999999999999987777 88888888888888888
Q ss_pred HHHHHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH----HHHHHHHHHHHHHhhhhhcccccCCCccCCCCch
Q 044395 92 LILGYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW----IAYVSFSQWIQVILVYTLVYHMMEPPLAYNYDTE 167 (408)
Q Consensus 92 ~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~----~aY~~~~~~v~~i~~w~~g~~ll~~~~~~~~~~~ 167 (408)
++..++..|.+|.++++++....+++|+|++++++++..++. ++|.+++.++++..+|++|+-.+...++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~---- 154 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT---- 154 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----
Confidence 888888888999999999999999999999999999999887 999999999999999999987666532200
Q ss_pred hhhhhhhhccccCCCCCCCCCCccccccccccccccccccccCCCCCCCCccccCCccchhhheehhhccCcccccChhH
Q 044395 168 EEEEEEINEIEEQPVENSLSRPLLVEADFISNKYSNFESMKDRDSNSPKSTKCMAEPKTVKKIRIIAVHTPISVILQPQT 247 (408)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ 247 (408)
+ ...++.. .+-+.||+.
T Consensus 155 -------------------------------------------------~------~~~~~~~--------~~~~~nP~i 171 (311)
T COG0679 155 -------------------------------------------------N------KSLLSVL--------KKLLTNPLI 171 (311)
T ss_pred -------------------------------------------------h------hHHHHHH--------HHHHhCcHH
Confidence 0 0000000 134579999
Q ss_pred HHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 044395 248 FASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRTTVGIIIARLLILPLI 327 (408)
Q Consensus 248 iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~~~~~~~~iv~i~~~RlillPii 327 (408)
+|.++|++....+ +.- | .++.++++++|++++|++++++|+.|+. .+.++..++.+......|+++.|++
T Consensus 172 ~a~i~g~~~~~~~------i~l--P-~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~ 241 (311)
T COG0679 172 IALILGLLLNLLG------ISL--P-APLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLV 241 (311)
T ss_pred HHHHHHHHHHHcC------CCC--c-HHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHH
Confidence 9999999999877 332 2 3789999999999999999999999997 2345556677777878899999999
Q ss_pred HHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 328 GMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYLIIYFK 402 (408)
Q Consensus 328 gi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l~ 402 (408)
...+.+.. | - ++...-|++++.++|+|.+-..+++.++.+++..+...+-|-.++.+++|.|..+..+
T Consensus 242 ~~~~~~~~---~---l-~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 242 ALLVAKLL---G---L-SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHc---C---C-ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99866522 2 2 3345599999999999999999999999888889999999999999999988877654
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.97 E-value=1.1e-28 Score=244.90 Aligned_cols=307 Identities=20% Similarity=0.290 Sum_probs=241.0
Q ss_pred HHHhhhhHHHHHHHHHHhHHH-hccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHH
Q 044395 12 VFSAVLPLLKLLSIAVFGLTI-AHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTF 90 (408)
Q Consensus 12 i~~A~~pvlkV~li~~~G~~l-a~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~ 90 (408)
+|.....++.++++.+.||++ . |+|++|+|..|.+|++++++.+|||+|+++++.-..++....+...+.....+..
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSG 80 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777799999999999 9 9999999999999999999999999999999854333444555555555667778
Q ss_pred HHHHHHHHHH-HcCCCCCCcceeeeeeecCCCCChHHHHHHHHH-------HHHHHHHHHHHHHhhhhhcccccCCCccC
Q 044395 91 GLILGYLVTL-ICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW-------IAYVSFSQWIQVILVYTLVYHMMEPPLAY 162 (408)
Q Consensus 91 g~~~g~l~~k-~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~-------~aY~~~~~~v~~i~~w~~g~~ll~~~~~~ 162 (408)
.++++|.+.| .+|.+++.++....+++++|++++-+++++++. ..|...+.....+..|+.|+-+.....+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (321)
T TIGR00946 81 SYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGA- 159 (321)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccc-
Confidence 8899999998 889898889998999999999999999999997 3455555555567778887644321100
Q ss_pred CCCchhhhhhhhhccccCCCCCCCCCCccccccccccccccccccccCCCCCCCCccccCCccchhhheehhhccCccc-
Q 044395 163 NYDTEEEEEEEINEIEEQPVENSLSRPLLVEADFISNKYSNFESMKDRDSNSPKSTKCMAEPKTVKKIRIIAVHTPISV- 241 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (408)
+ + .+ + .++.++..+.. +++
T Consensus 160 --~--~--------~~--------------------------------------~-----~~~~~~~~~~~-----~~~~ 179 (321)
T TIGR00946 160 --G--G--------EG--------------------------------------S-----GESTRLMLIFV-----WKKL 179 (321)
T ss_pred --c--c--------cc--------------------------------------c-----chhHHHHHHHH-----HHHH
Confidence 0 0 00 0 00000001000 233
Q ss_pred ccChhHHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCCCCCCchHHHHHHHHHH
Q 044395 242 ILQPQTFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRTTVGIIIARL 321 (408)
Q Consensus 242 ~~~Pp~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~~~~~~~~iv~i~~~Rl 321 (408)
+.||+.+|.++|+++...+ ++ -| .++.|+++++|++++|+.++++|..+... ..+.+++.+...++.|+
T Consensus 180 ~~nP~iia~i~Gl~~~~~~------i~--lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 180 IKFPPLWAPLLSVILSLVG------FK--MP-GLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDAILALIVRF 248 (321)
T ss_pred HhCCChHHHHHHHHHHHHh------hc--Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHHHHHHHHHH
Confidence 4689999999999999987 22 23 68899999999999999999999999753 23345678888899999
Q ss_pred HHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 322 LILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYLII 399 (408)
Q Consensus 322 illPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~ 399 (408)
++.|++...+.. +.+. |+..+-+++++.++|+|.+...+++.+|.++++.+...+++..++.+++|+|+.+
T Consensus 249 il~P~i~~~~~~------~~~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 249 LVQPAVMAGISK------LIGL-RGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHH------HhCC-ChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999977665 2334 6778899999999999999999999999999999999999999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.95 E-value=1.7e-26 Score=228.80 Aligned_cols=298 Identities=14% Similarity=0.204 Sum_probs=231.6
Q ss_pred HHHHhhhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHH
Q 044395 11 DVFSAVLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTF 90 (408)
Q Consensus 11 ~i~~A~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~ 90 (408)
.++..+.| ++++++.||+++ |+|++++|..|.+|++++++.+||++|+++.+. +.++..+-|...+..++.+..
T Consensus 4 ~~~~~ilp---if~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (314)
T PRK09903 4 FFIGDLLP---IIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVG 77 (314)
T ss_pred HHHHHHHH---HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHH
Confidence 45666777 889999999999 999999999999999999999999999999875 556655345566777888888
Q ss_pred HHHHHHHHHH-HcCCCCCCcceeeeeeecCCCCChHHHHHHHHH-------HHHHHHHHHHHHHhhhhhcccccCCCccC
Q 044395 91 GLILGYLVTL-ICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW-------IAYVSFSQWIQVILVYTLVYHMMEPPLAY 162 (408)
Q Consensus 91 g~~~g~l~~k-~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~-------~aY~~~~~~v~~i~~w~~g~~ll~~~~~~ 162 (408)
.++++|++.| ..|.+++.++....+++++|++++-+++++++. +.|... ..+.+++.|++|.-.++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~- 155 (314)
T PRK09903 78 CFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAII-SIIVNAITIPIGLYLLNPSSG- 155 (314)
T ss_pred HHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHH-HHHHHHHHHHHHHHHHccccc-
Confidence 8888988875 667777777777888899999999999999986 224444 346788899988766653211
Q ss_pred CCCchhhhhhhhhccccCCCCCCCCCCccccccccccccccccccccCCCCCCCCccccCCccchhhheehhhccCcccc
Q 044395 163 NYDTEEEEEEEINEIEEQPVENSLSRPLLVEADFISNKYSNFESMKDRDSNSPKSTKCMAEPKTVKKIRIIAVHTPISVI 242 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
+ + + + + +..++.. .+-+
T Consensus 156 --~--~---------~--------------------------------------~-~----~~~~~~l--------~~~~ 171 (314)
T PRK09903 156 --A--D---------G--------------------------------------K-K----NSNLSAL--------ISAA 171 (314)
T ss_pred --c--c---------c--------------------------------------c-c----chHHHHH--------HHHH
Confidence 0 0 0 0 0 0001111 1235
Q ss_pred cChhHHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCCCCCCchHHHHHHHHHHH
Q 044395 243 LQPQTFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRTTVGIIIARLL 322 (408)
Q Consensus 243 ~~Pp~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~~~~~~~~iv~i~~~Rli 322 (408)
-||+.+|.++|+++.+.. + .-| .++.++++++|++++|+.++.+|++|++... +.. +......+.|++
T Consensus 172 ~nP~iia~~~gl~~~l~~------i--~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~--~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 172 KEPVVWAPVLATILVLVG------V--KIP-AAWDPTFNLIAKANSGVAVFAAGLTLAAHKF--EFS-AEIAYNTFLKLI 239 (314)
T ss_pred hchHHHHHHHHHHHHHcC------C--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccc-HHHHHHHHHHHH
Confidence 689999999999987644 2 223 6899999999999999999999999987532 222 345567788999
Q ss_pred HHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 323 ILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYLII 399 (408)
Q Consensus 323 llPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~ 399 (408)
+.|++...+... .| . |+...-+++++.++|+|.+-..+++.+|.+++..++..+.+..++.+++|+|+.+
T Consensus 240 ~~P~i~~~~~~~---~~---l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 240 LMPLALLLVGMA---CH---L-NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHH---cC---C-CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988665542 23 3 6677789999999999999999999999888889999999999999999999985
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.52 E-value=0.00038 Score=68.46 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=89.2
Q ss_pred chhhHHHHhhccccCCCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHH
Q 044395 286 AAVPSAMLVLGGMLTEGP-NESNLGIRTTVGIIIARLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILL 364 (408)
Q Consensus 286 a~VPl~llvLGa~L~~g~-~~~~~~~~~iv~i~~~RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l 364 (408)
..+...++.+|.++.... ++....+|.+...++.|++++|+++..+.+. .+ .||.+...+++..++|+|.+-
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~-l~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FK-LPPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hC-CCHHHHHHHHheeeCCCchHH
Confidence 337778899999997431 1111234677788889999999999877652 22 388899999999999999999
Q ss_pred HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044395 365 AAIANLRAYAASEASALLFWQHVFAIFSLAIYLIIYFKL 403 (408)
Q Consensus 365 ~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l~~ 403 (408)
..+|+.++.+.+..+.....+-+++++++|+|+.++...
T Consensus 85 ~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~ 123 (286)
T TIGR00841 85 NVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKM 123 (286)
T ss_pred HHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887777788888899999999999999887654
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.94 E-value=0.14 Score=50.98 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=86.1
Q ss_pred cchhhHHHHhhccccCCCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHH
Q 044395 285 EAAVPSAMLVLGGMLTEGP-NESNLGIRTTVGIIIARLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAIL 363 (408)
Q Consensus 285 ~a~VPl~llvLGa~L~~g~-~~~~~~~~~iv~i~~~RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~ 363 (408)
..++-++.+..|.+|.+.. +..-..||..+..++.-++++|++++++.+ +.+. ||-+.-=+++..+.|..++
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~------~~~l-~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAK------LFPL-PPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH------HcCC-CHHHHHhHHheeeCCCchh
Confidence 4456678888899998541 122335788888999999999999999988 3334 7778888899999999999
Q ss_pred HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 364 LAAIANLRAYAASEASALLFWQHVFAIFSLAIYLIIYFK 402 (408)
Q Consensus 364 l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l~ 402 (408)
...+|.+.+.+-.-+-..-.-+-.++++..|+++..++.
T Consensus 114 S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 114 SNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988999976554444445667888999999999887764
No 8
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.92 E-value=0.34 Score=47.58 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhHHHhccccCCCChhhhhh---hhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHH
Q 044395 19 LLKLLSIAVFGLTIAHPKLQLVPNDTLKI---LNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFGLILG 95 (408)
Q Consensus 19 vlkV~li~~~G~~la~~r~~il~~~~~k~---ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g~~~g 95 (408)
..-+++-...|..++ |.- ++.+|. ++.+... ++=++++.-++.+... -..+.|.+-+..++...+|+.+|
T Consensus 140 ~~~v~vPl~lG~~~r--~~~---p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~~~-i~~~~~~~~~~~~ll~~~~~~~g 212 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HKL---PQIAKIILKVGLISVF-LLSVIIAVVGGINVEN-LATIGPLLLLVGILLPLAGFLLG 212 (286)
T ss_pred HHHHHHHHHHHHHHH--HHh---HHHHHHHHhCchHHHH-HHHHHHHHHHHhhHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 666888899999888 432 222222 3333222 2224444444433321 11233445556688899999999
Q ss_pred HHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH--------HHHHHHHHHHHHHhhh
Q 044395 96 YLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW--------IAYVSFSQWIQVILVY 149 (408)
Q Consensus 96 ~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~--------~aY~~~~~~v~~i~~w 149 (408)
|.++|.+|.+++.+.-+...++..|++ +-+++.++.. ..|...+...+.++.+
T Consensus 213 ~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 213 YLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888889999999988 6666555442 4455555555555443
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.73 E-value=0.12 Score=47.40 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=73.7
Q ss_pred hhHHHHhhccccCCC-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHH
Q 044395 288 VPSAMLVLGGMLTEG-PNESNLGIRTTVGIIIARLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAA 366 (408)
Q Consensus 288 VPl~llvLGa~L~~g-~~~~~~~~~~iv~i~~~RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~ 366 (408)
+-+.++..|.++.-. .+...-.+|.++..++..++++|+++.++.... . .+||-+..-+++..+.|.+.....
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~-~~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----L-PLSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----T-T--HHHHHHHHHHHHS-B-THHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----h-cCCHHHHHHHHHHhcCCcHHHHHH
Confidence 445666777777522 011111357778888999999999999988422 2 338889999999999999999989
Q ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 367 IANLRAYAASEASALLFWQHVFAIFSLAIYLIIYFK 402 (408)
Q Consensus 367 itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l~ 402 (408)
.|.+.+.+..-..+....+-.++++.+|+|..++..
T Consensus 78 ~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 78 FTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 999876554445555677779999999999887653
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.56 E-value=0.63 Score=46.40 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCC-CCCCCCchHHHHHHHHHHHHHH
Q 044395 247 TFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGP-NESNLGIRTTVGIIIARLLILP 325 (408)
Q Consensus 247 ~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~-~~~~~~~~~iv~i~~~RlillP 325 (408)
.++.++++.+|..=|-... ..++++. ++.....|.++.++-|.+|.... +..-..||....+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~g~---~~~~~~~-----~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGA---AGGVIKP-----EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcccc---cCCccch-----hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5566666666654432211 1122211 23334458999999999997531 1223457899999999999999
Q ss_pred HHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHH-HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 326 LIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAA-IANLRAYAASEASALLFWQHVFAIFSLAIYLIIYF 401 (408)
Q Consensus 326 iigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~-itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l 401 (408)
+++.++...... + .|+-+..=+++..|+|+.++... +|+..|..+.-....-.-+-.+.++..|+|+..++
T Consensus 76 ll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F---LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999988875542 2 25558899999999999988764 78876655444444455678899999999998887
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.92 E-value=1.4 Score=44.18 Aligned_cols=139 Identities=14% Similarity=0.060 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhccchhhhccccCCCchhhHHHHHHHhccchhh------HHHHhhccccCCC-CCCCCCCchHHHHHHHH
Q 044395 247 TFASVFAVLIGVIPGLKSFVFGSGAPLGFLTDSLDIVAEAAVP------SAMLVLGGMLTEG-PNESNLGIRTTVGIIIA 319 (408)
Q Consensus 247 ~iaailglivg~iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VP------l~llvLGa~L~~g-~~~~~~~~~~iv~i~~~ 319 (408)
..++++|+++|..-|- ...++.. . .......| .+++..|.++... .+..--.+|.+....+.
T Consensus 13 ~~~~i~~~~~g~~~P~---------~~~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPS---------VFQALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhccc---------cHHHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 4566678888875421 1122211 1 22334445 3566666777532 11111246788889999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 320 RLLILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYLII 399 (408)
Q Consensus 320 RlillPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~ 399 (408)
-++++|+++.++.+... .++|-+..=+++..+.|.+.....+|.+.+.+-......--.+-.++++.+|.++.+
T Consensus 82 qfvi~Plla~~l~~l~~------~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLFL------RDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred HHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876321 236779999999999999998888899876554444344466677788888887766
Q ss_pred HHH
Q 044395 400 YFK 402 (408)
Q Consensus 400 ~l~ 402 (408)
+..
T Consensus 156 l~~ 158 (328)
T TIGR00832 156 LLG 158 (328)
T ss_pred HHh
Confidence 654
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=88.16 E-value=1.9 Score=43.13 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=65.0
Q ss_pred HHHHhhhhHHHH-HHHHHHhHHHhccccCCCChhhhh---hhhhhHHHhhhhHHHHHhh---hcccccchhhhHHHHHHH
Q 044395 11 DVFSAVLPLLKL-LSIAVFGLTIAHPKLQLVPNDTLK---ILNKLVFVLFLPCLIFNHL---ATCISLKNFLLWWFIPVN 83 (408)
Q Consensus 11 ~i~~A~~pvlkV-~li~~~G~~la~~r~~il~~~~~k---~ls~l~~~~flP~LiFskl---a~~lt~~~l~~~w~ipv~ 83 (408)
..+...+.++++ ++-...|-++. .++.+-.+| .++.+- ....=+.++... ..++-..++ .+-+.
T Consensus 158 ~~~~m~~~i~~~vllP~~LG~~~r----~~~~~~~~~~~~~l~~vs-~~~illIv~~~~s~~~~~~~~~~~----~v~~~ 228 (319)
T COG0385 158 DVGGMFLSILLQVLLPFVLGQLLR----PLLPKWVERLKKALPPVS-VLSILLIVYAAFSAAVENGIWSGL----LIFVA 228 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhhhHHHH----HHHHH
Confidence 445555555544 55577777666 233333332 222222 222223333333 333333333 56677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceeeeeeecCCCC
Q 044395 84 VLVSTTFGLILGYLVTLICRPPPQFFRFTIIMTAFGNTG 122 (408)
Q Consensus 84 ~~l~~~~g~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~ 122 (408)
.+++..+|+..||..+|.++.+++.|.-+..|++-.|.+
T Consensus 229 v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 229 VILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 799999999999999999999999999999999999975
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=87.16 E-value=1 Score=45.15 Aligned_cols=101 Identities=14% Similarity=-0.031 Sum_probs=63.0
Q ss_pred HHHHHHHHhHHHhcccc-----CCCChhhhhhhhhhHHHhhhhHHHHHhhhccc--ccchhhhHHHHHHHHHHHHHHHHH
Q 044395 21 KLLSIAVFGLTIAHPKL-----QLVPNDTLKILNKLVFVLFLPCLIFNHLATCI--SLKNFLLWWFIPVNVLVSTTFGLI 93 (408)
Q Consensus 21 kV~li~~~G~~la~~r~-----~il~~~~~k~ls~l~~~~flP~LiFskla~~l--t~~~l~~~w~ipv~~~l~~~~g~~ 93 (408)
-+++-...|.+++.-.. +..+++.++.++.+.. +++=..++...+.+- -.++..+.+.+-+..++++..++.
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 34566777877763111 1222233344555444 333344444444442 122333344444556789999999
Q ss_pred HHHHHHHHcCCCCCCcceeeeeeecCCCC
Q 044395 94 LGYLVTLICRPPPQFFRFTIIMTAFGNTG 122 (408)
Q Consensus 94 ~g~l~~k~~~~p~~~~~~v~~~~~f~N~~ 122 (408)
+||.++|.+|.+++++.=+..+++..|.+
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e~g~qN~~ 290 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFTGASNNFE 290 (328)
T ss_pred HHHHHHHHhCcChhhhhhheehhhhhhHH
Confidence 99999999999999999999999998853
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=85.28 E-value=7.4 Score=39.92 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 22 LLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFGLILGYLVT 99 (408)
Q Consensus 22 V~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~~ 99 (408)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==+ -+.+++++.+...=.+..++.-.+|..+|-.+.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va 102 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVA 102 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999 899997666777888888888887665433 345677777666555555555555555554443
No 15
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=66.02 E-value=84 Score=31.29 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhHHHhccccCCCChhh---hhhhhhhHHHhhhhHHHHHhhhcccc-----cchhhhHHHHHHHHHHHH
Q 044395 17 LPLLKLLSIAVFGLTIAHPKLQLVPNDT---LKILNKLVFVLFLPCLIFNHLATCIS-----LKNFLLWWFIPVNVLVST 88 (408)
Q Consensus 17 ~pvlkV~li~~~G~~la~~r~~il~~~~---~k~ls~l~~~~flP~LiFskla~~lt-----~~~l~~~w~ipv~~~l~~ 88 (408)
+=++++++-...|-+++ |. +.+.. +|.++++ =...+-.++++...++.. --+..++..+-...+...
T Consensus 162 ~L~~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~-~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLL-SQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLL 236 (313)
T ss_pred HHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHH
Confidence 44566788888898877 32 33332 2233332 344455666666665522 122234444555556777
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHH
Q 044395 89 TFGLILGYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSV 132 (408)
Q Consensus 89 ~~g~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL 132 (408)
.+.+.++|...|.++.+++.+-=++.|++ ..+..+=+.++..+
T Consensus 237 ~~~l~~~~~~~r~~~~~~~d~iA~~F~gs-~Ksl~~gvpl~~~l 279 (313)
T PF13593_consen 237 LVVLVLGWLAARLLGFSRPDRIAVLFCGS-QKSLALGVPLASIL 279 (313)
T ss_pred HHHHHHHHHHHhhcCCChhhEEEEEEEcC-cCcchhHHHHHHHH
Confidence 88889999999999999988777565555 43333333333333
No 16
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=60.72 E-value=30 Score=35.06 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHHHHHhHHHhccccCCCChhhhhh---hhhhHHHhhhhHHHHHhhhcccccchhhhHH-HHHHHHHHHHHHHHHHH-HH
Q 044395 23 LSIAVFGLTIAHPKLQLVPNDTLKI---LNKLVFVLFLPCLIFNHLATCISLKNFLLWW-FIPVNVLVSTTFGLILG-YL 97 (408)
Q Consensus 23 ~li~~~G~~la~~r~~il~~~~~k~---ls~l~~~~flP~LiFskla~~lt~~~l~~~w-~ipv~~~l~~~~g~~~g-~l 97 (408)
..+...|.++. ..|+++++.... .+|.+...+++.+++.==....+++++.+.- +--+..++...+|..++ ++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 45667788888 999999877655 4445566677776663222457888888865 22233345555555444 78
Q ss_pred HHHHcCCCCCCccee--eeeeecCCCCChH
Q 044395 98 VTLICRPPPQFFRFT--IIMTAFGNTGYIP 125 (408)
Q Consensus 98 ~~k~~~~p~~~~~~v--~~~~~f~N~~~LP 125 (408)
+.|+++.=+-+..-+ +.++..|.+||+-
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 999998755333332 2345566677753
No 17
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=60.23 E-value=81 Score=31.69 Aligned_cols=132 Identities=17% Similarity=0.260 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhHHHhccc---cCCCChhhhhhhhhhHHHhhhhHHH--------HHhhhccc-----------ccchhh
Q 044395 18 PLLKLLSIAVFGLTIAHPK---LQLVPNDTLKILNKLVFVLFLPCLI--------FNHLATCI-----------SLKNFL 75 (408)
Q Consensus 18 pvlkV~li~~~G~~la~~r---~~il~~~~~k~ls~l~~~~flP~Li--------Fskla~~l-----------t~~~l~ 75 (408)
+.+|.+-..=.||++. + .=+--+..||+-..+++-=..-||+ |+++|-.+ +.+|..
T Consensus 202 ~lfk~fYliqaafw~q--Qa~ilvLqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~l 279 (395)
T COG5058 202 FLFKAFYLIQAAFWAQ--QACILVLQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTL 279 (395)
T ss_pred HHHHHHHHHHHHHHHH--HHhhheeeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHH
Confidence 5678888888999988 6 2344577888888888765555544 45555443 233344
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHH----------HcCCCCCCccee--eeeeecCCCCChHHHH--HHHHHHHHHHHH
Q 044395 76 LWWFIPVNVLVSTTFGLILG-YLVTL----------ICRPPPQFFRFT--IIMTAFGNTGYIPLAV--VSSVWIAYVSFS 140 (408)
Q Consensus 76 ~~w~ipv~~~l~~~~g~~~g-~l~~k----------~~~~p~~~~~~v--~~~~~f~N~~~LPl~l--i~sL~~aY~~~~ 140 (408)
++- =- .+.++++|++++ |+-.| +...++..-|+. .++.--+|+-++|+.. +|+|. +...
T Consensus 280 nYl--~~-~l~~~iF~iFv~~wIysRHyln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQ---lvni 353 (395)
T COG5058 280 NYL--NS-VLATFIFGIFVFIWIYSRHYLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQ---LVNI 353 (395)
T ss_pred HHh--hc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHH---HHHH
Confidence 431 11 355666666655 66555 234455555544 4556678899999764 47774 1112
Q ss_pred HHHHHHhhhhhcccccCCC
Q 044395 141 QWIQVILVYTLVYHMMEPP 159 (408)
Q Consensus 141 ~~v~~i~~w~~g~~ll~~~ 159 (408)
-|++.+++- +||.+..+
T Consensus 354 yWl~lIvRv--ayRv~~~~ 370 (395)
T COG5058 354 YWLFLIVRV--AYRVIWEG 370 (395)
T ss_pred HHHHHHHHH--HHHHhccc
Confidence 344445443 45555443
No 18
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=54.77 E-value=22 Score=37.84 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHH
Q 044395 18 PLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFG 91 (408)
Q Consensus 18 pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g 91 (408)
|-+.+++++..|.=.|. |.|.+++-.+|.+.+.-=...+|..+|.-+-+++. +|..-+-++|+.+.+...+|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~G 160 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVG 160 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcC
Confidence 55778888888876664 89999999999999999999999998887777765 34455888999998887655
No 19
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=47.67 E-value=77 Score=31.72 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHH-HHHHHHHHHHHHHHHHHH
Q 044395 19 LLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWF-IPVNVLVSTTFGLILGYL 97 (408)
Q Consensus 19 vlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~-ipv~~~l~~~~g~~~g~l 97 (408)
++-.++-...|.++. | +|++.|+.+++=.- +..|-.. --++.+++++++.+.+. ..+..++...+...+++.
T Consensus 166 lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 166 LVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 355778888999888 5 77777777666532 2333333 35899999999999965 444456677788888999
Q ss_pred HHHHcCCCCCCcceeeeeeecCCCCChHHHHH
Q 044395 98 VTLICRPPPQFFRFTIIMTAFGNTGYIPLAVV 129 (408)
Q Consensus 98 ~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li 129 (408)
+.|++|.+++. ....+...||.=-=|-++.
T Consensus 239 i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 239 ADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 99999877744 2233333666544444443
No 20
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=47.13 E-value=74 Score=34.46 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhh-HHHhhhhHHHHHhhhcccc-----------------------
Q 044395 15 AVLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKL-VFVLFLPCLIFNHLATCIS----------------------- 70 (408)
Q Consensus 15 A~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l-~~~~flP~LiFskla~~lt----------------------- 70 (408)
.-.|++=++++++.|+++. |..+ |.+|-= +--++.=+|++.+++.++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 3578999999999999998 6655 222222 2223333444444444322
Q ss_pred cchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceeeeeeecCCCCChHHH
Q 044395 71 LKNFLL-WWFIPVNVLVSTTFGLILGYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLA 127 (408)
Q Consensus 71 ~~~l~~-~w~ipv~~~l~~~~g~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~ 127 (408)
.+++++ =|..-+..++...+|.++.|...|++..|...-.+ +.|++--|+-.|=-+
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~G-l~aGalT~tp~l~aA 136 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAG-LAAGGLTQSAVIGTA 136 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHhchhhccHHHHHH
Confidence 123333 24455666788888999999999999999876666 555666666555443
No 21
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=45.20 E-value=85 Score=32.67 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=71.4
Q ss_pred hhhHHHH------HHHHHHhHHHhccccCCCChhhhhhhhhhH-----HHhhhhHHHHHhhh---cccccchhhhHHHHH
Q 044395 16 VLPLLKL------LSIAVFGLTIAHPKLQLVPNDTLKILNKLV-----FVLFLPCLIFNHLA---TCISLKNFLLWWFIP 81 (408)
Q Consensus 16 ~~pvlkV------~li~~~G~~la~~r~~il~~~~~k~ls~l~-----~~~flP~LiFskla---~~lt~~~l~~~w~ip 81 (408)
-.|++|= ++..+...++. +.|+++++..+.+.+.. .++|--||+-.++= +.+=.+...++ +|
T Consensus 50 riPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p 125 (414)
T PF03390_consen 50 RIPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IP 125 (414)
T ss_pred hChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HH
Confidence 3577776 66777778888 89999999999988765 46777888876654 33334445555 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC--CcceeeeeeecC-CCCChHHHHHHHHH
Q 044395 82 VNVLVSTTFGLILGYLVTLICRPPPQ--FFRFTIIMTAFG-NTGYIPLAVVSSVW 133 (408)
Q Consensus 82 v~~~l~~~~g~~~g~l~~k~~~~p~~--~~~~v~~~~~f~-N~~~LPl~li~sL~ 133 (408)
.. +...+.++++|-++..++..+.+ ...-+++.-+=| +-|-+|++.+.+=.
T Consensus 126 ~i-l~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~ 179 (414)
T PF03390_consen 126 PI-LGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEA 179 (414)
T ss_pred HH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHH
Confidence 32 22344455555566666654432 333334444334 48999999987665
No 22
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=41.70 E-value=47 Score=35.57 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHH
Q 044395 20 LKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFG 91 (408)
Q Consensus 20 lkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g 91 (408)
+.+++++..|+=.|. |.|.+++-.+|.+.+.-=...+|..+|.-+-+++. +|..-+-++|+.+.+...+|
T Consensus 87 Lg~vlv~mlGvGvae-~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~G 156 (513)
T TIGR00819 87 LGAILALLLGAGIAE-KSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALG 156 (513)
T ss_pred HHHHHHHHHHHHHHH-HhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcC
Confidence 445555555544443 89999999999999999999999988877776664 34455888999998887655
No 23
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=38.07 E-value=7.3 Score=42.42 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=61.8
Q ss_pred HhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCcceeeeeeecCCCCChHHHHHHHHH-------
Q 044395 63 NHLATCISLKNFLLWWFIPVNVLVSTTFGLILGYLVTLICRP--PPQFFRFTIIMTAFGNTGYIPLAVVSSVW------- 133 (408)
Q Consensus 63 skla~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~~k~~~~--p~~~~~~v~~~~~f~N~~~LPl~li~sL~------- 133 (408)
+|+.+. -+++-+||+ +...+++.+++..++.-.+- --++.++ +.||+++=...+|+.++||..
T Consensus 432 trlMkk--YKeVP~WWf-----~~ili~s~~l~~~~~~~~~~~~q~PwWg~-~va~~ia~vf~iPigii~AtTNq~~GLN 503 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWF-----LAILIVSLGLGLAACEGYKTQVQLPWWGL-LVACAIAFVFTIPIGIIQATTNQTPGLN 503 (761)
T ss_pred HHHHHH--hccCcHHHH-----HHHHHHHHHHHhhheeeecccccCchHHH-HHHHHHHHHHhccHHHhhhhccCCccHH
Confidence 445555 677778888 44555666677666666554 3344554 778888899999999999998
Q ss_pred ------HHHHHHHHHHHHHhhhhhcccccCCC
Q 044395 134 ------IAYVSFSQWIQVILVYTLVYHMMEPP 159 (408)
Q Consensus 134 ------~aY~~~~~~v~~i~~w~~g~~ll~~~ 159 (408)
+.|+.=..=+.+++.-+|||.-++..
T Consensus 504 iitE~i~Gy~~PgrPiAn~~FK~yGyism~Qa 535 (761)
T KOG2262|consen 504 IITEYIIGYIYPGRPIANLCFKTYGYISMTQA 535 (761)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHhchhhHHHH
Confidence 44444344478888889998766543
No 24
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=36.82 E-value=1.3e+02 Score=31.02 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=57.3
Q ss_pred HHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Q 044395 26 AVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVN-VLVSTTFGLILGYLVTLICRP 104 (408)
Q Consensus 26 ~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~-~~l~~~~g~~~g~l~~k~~~~ 104 (408)
..+|..++ +...-.++..+++..+...+|.| +-|.++|-+++++.+.+.|..-+. ..+....=.+..|+.+|.++.
T Consensus 250 FlaGl~ls--~~~~~~~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~ 326 (397)
T COG0475 250 FLAGLLLS--ESEYRKHELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGF 326 (397)
T ss_pred HHHHHHhc--ccccchHHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566666 33332268888898888888887 789999999999999998887333 344444445557899999997
Q ss_pred CCC
Q 044395 105 PPQ 107 (408)
Q Consensus 105 p~~ 107 (408)
+++
T Consensus 327 ~~~ 329 (397)
T COG0475 327 SKR 329 (397)
T ss_pred cHH
Confidence 654
No 25
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=34.30 E-value=2.5e+02 Score=28.86 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=69.6
Q ss_pred HHHHHHHHHhHHHhccccCCCCh-hhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044395 20 LKLLSIAVFGLTIAHPKLQLVPN-DTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFGLILGYLV 98 (408)
Q Consensus 20 lkV~li~~~G~~la~~r~~il~~-~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~ 98 (408)
.-+++++.+|...+ ....... .....++....++| |.-++..-+++++.+-..+.+..++...+-.++=+++
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778887777 3333333 56666776666654 7889999999999995556666677777778888899
Q ss_pred HHHcCCCCCCcceeeeeeecCCCCChHHHHHHH
Q 044395 99 TLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSS 131 (408)
Q Consensus 99 ~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~s 131 (408)
.|++|.|. ..+.-++=.|+|-=+.+-+.+
T Consensus 314 ~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A 342 (378)
T PF05684_consen 314 GKLFKIDL----FELLVASNANIGGPATAPAVA 342 (378)
T ss_pred HHHHCCCH----HHHHHHhhcccCCcchHHHHH
Confidence 99999987 445555556666666554433
No 26
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=29.91 E-value=3.5e+02 Score=27.58 Aligned_cols=94 Identities=20% Similarity=0.454 Sum_probs=63.3
Q ss_pred ccCCCChhhhhhhhhhH-----HHhhhhHHHHHhhh---cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-
Q 044395 36 KLQLVPNDTLKILNKLV-----FVLFLPCLIFNHLA---TCISLKNFLLWWFIPVNVLVSTTFGLILGYLVTLICRPPP- 106 (408)
Q Consensus 36 r~~il~~~~~k~ls~l~-----~~~flP~LiFskla---~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~~k~~~~p~- 106 (408)
++|+++++..|..++.. .++|--||+-.++- +.+=.+...++ +|.... ..+.++++|-++..++..+.
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~--~p~il~-g~~~a~~~g~lvG~l~G~~~~ 81 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRF--IPPALI-GMVLAVIVGILVGTLFGLGFD 81 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHcCCCHh
Confidence 78999999999998843 56888888877664 33344455555 444333 45556677777777775544
Q ss_pred -CCcceeeeeeecCC-CCChHHHHHHHH
Q 044395 107 -QFFRFTIIMTAFGN-TGYIPLAVVSSV 132 (408)
Q Consensus 107 -~~~~~v~~~~~f~N-~~~LPl~li~sL 132 (408)
-....+++.-+=|| -|-+|++.+.+=
T Consensus 82 ~~~~~i~lPIm~GG~GaGavPLS~~Y~~ 109 (347)
T TIGR00783 82 HSLMYIVMPIMAGGVGAGIVPLSIIYSA 109 (347)
T ss_pred HhhheeeehhcCCCcccchhhHHHHHHH
Confidence 34555555555555 899999998773
No 27
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=29.79 E-value=1.1e+02 Score=31.90 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=57.6
Q ss_pred ccCCCCh---hhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHH-HHHHHHHHHHHHH-HHHHHHHcCCCCCCcc
Q 044395 36 KLQLVPN---DTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIP-VNVLVSTTFGLIL-GYLVTLICRPPPQFFR 110 (408)
Q Consensus 36 r~~il~~---~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ip-v~~~l~~~~g~~~-g~l~~k~~~~p~~~~~ 110 (408)
-.|++++ ++.|++++.+.+-++|.|++.==....+++++.+.-=.+ +..++.+.+|..+ ++++.|+++.-+-+..
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA 365 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA 365 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4688886 567889999999999999986444446777776654211 1113334444444 4788899988764444
Q ss_pred eee--eeeecCCCCCh
Q 044395 111 FTI--IMTAFGNTGYI 124 (408)
Q Consensus 111 ~v~--~~~~f~N~~~L 124 (408)
-+. .++..|.+||+
T Consensus 366 ItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 366 ITAGLCMANMGGTGDV 381 (414)
T ss_pred HHhhhcccCCCCCCcc
Confidence 332 34566778886
No 28
>PRK05326 potassium/proton antiporter; Reviewed
Probab=29.48 E-value=2.3e+02 Score=30.41 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHH-HHHHHHHH-HHHHHHHHHH
Q 044395 24 SIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVN-VLVSTTFG-LILGYLVTLI 101 (408)
Q Consensus 24 li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~-~~l~~~~g-~~~g~l~~k~ 101 (408)
-....|.+++ +...-..+..+...+-.-.++.|. +|..++-.++++++.+.+..-+. .++...++ .+..|+..+.
T Consensus 249 a~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~ 325 (562)
T PRK05326 249 AVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLP 325 (562)
T ss_pred HHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3446677777 444444444445555555677765 79999999999988766432221 12222233 3334555667
Q ss_pred cCCCCCCcceeeeeeecCCCCChHHHHH
Q 044395 102 CRPPPQFFRFTIIMTAFGNTGYIPLAVV 129 (408)
Q Consensus 102 ~~~p~~~~~~v~~~~~f~N~~~LPl~li 129 (408)
+|.|.+.+.++--+ |-=|..|+++.
T Consensus 326 ~~~~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 326 FRFNLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CCCCHhhhheeeee---cchhHHHHHHH
Confidence 78887766664333 44666776554
No 29
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=28.92 E-value=62 Score=29.95 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=49.6
Q ss_pred HHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcc-cccchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHc
Q 044395 25 IAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATC-ISLKNFLLWWFIPVNVLVSTTFG-LILGYLVTLIC 102 (408)
Q Consensus 25 i~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~-lt~~~l~~~w~ipv~~~l~~~~g-~~~g~l~~k~~ 102 (408)
....|+++. +....+.+...++++...++ +=-++--+++++ ...+++++...--+..-+.+++| .+.|++..+++
T Consensus 4 ~li~Gi~lG--~~~~~~~~~~~~~~~~~L~l-LLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 4 ALILGILLG--YFLRPPFSLIDKISTYALYL-LLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eHHHHHHHH--HHhcccccccccHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666 55554422223334333332 223455678877 67788885554444443344444 44457788888
Q ss_pred CCCCCCcceeeeeeecCCC
Q 044395 103 RPPPQFFRFTIIMTAFGNT 121 (408)
Q Consensus 103 ~~p~~~~~~v~~~~~f~N~ 121 (408)
+.| ++.....+.+||=+
T Consensus 81 ~~~--~~~~lav~sG~GwY 97 (191)
T PF03956_consen 81 GLS--LKESLAVASGFGWY 97 (191)
T ss_pred cCC--HHHHHHHHccCcHH
Confidence 665 34455556666644
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.91 E-value=94 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 76 LWWFIPVNVLVSTTFGLILGYLVTL 100 (408)
Q Consensus 76 ~~w~ipv~~~l~~~~g~~~g~l~~k 100 (408)
++|...+..++..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566668889999999999966653
No 31
>PRK11677 hypothetical protein; Provisional
Probab=28.75 E-value=64 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 044395 84 VLVSTTFGLILGYLVTLICRPP 105 (408)
Q Consensus 84 ~~l~~~~g~~~g~l~~k~~~~p 105 (408)
+++.+++|+++|+++.|++...
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3477889999999999986544
No 32
>PRK04972 putative transporter; Provisional
Probab=28.38 E-value=1.9e+02 Score=31.38 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHH-HhhhhHHHHHhhhcccccchhhhH-------------------
Q 044395 18 PLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVF-VLFLPCLIFNHLATCISLKNFLLW------------------- 77 (408)
Q Consensus 18 pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~-~~flP~LiFskla~~lt~~~l~~~------------------- 77 (408)
|++=++++++.|+++. |..+ |.++-=.. -.+.=.|++..++..+ .+.++++
T Consensus 13 ~~~~lf~~i~lG~~lG--~i~~------~~~~LG~~~g~L~vgl~~g~~~~~~-~~~~~~~gl~lF~~~vG~~~Gp~F~~ 83 (558)
T PRK04972 13 YILLLFVVLALGLCLG--KLRL------GSIQLGNSIGVLVVSLLLGQQHFSI-NTDALNLGFMLFIFCVGVEAGPNFFS 83 (558)
T ss_pred ChHHHHHHHHHHHhhh--ceEE------eeEecCcchHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH-----------------H
Q 044395 78 ------WFIPVNVLVSTTFGLILGYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW-----------------I 134 (408)
Q Consensus 78 ------w~ipv~~~l~~~~g~~~g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~-----------------~ 134 (408)
|-.-+..++.+.++.++++...|+++.+...--+ +.|++.-|+-.|=-+ .+++. +
T Consensus 84 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~aGa~T~tp~l~~a-~~~~~~~~~~~~~~~~~~~~~~v 161 (558)
T PRK04972 84 IFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAG-MLAGSMTSTPVLVGA-GDTLRHSGAESRQLSLALDNLSL 161 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhhccccCcHHHHHH-HHHHhccCccccchhcccCccch
Q ss_pred HHHHHHHH--HHHHhhhhhcccccCCCccCCCCchhhhhhh
Q 044395 135 AYVSFSQW--IQVILVYTLVYHMMEPPLAYNYDTEEEEEEE 173 (408)
Q Consensus 135 aY~~~~~~--v~~i~~w~~g~~ll~~~~~~~~~~~~~~~~~ 173 (408)
+|...|-. ++.++.=++-.++++.+.+ ++.++.+++
T Consensus 162 gYa~~y~~g~i~~i~~~~~~p~l~ridl~---~e~~~~e~~ 199 (558)
T PRK04972 162 GYALTYLIGLVSLIVGARYLPKLQHQDLQ---TSAQQIARE 199 (558)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHH
No 33
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=28.16 E-value=3.1e+02 Score=27.27 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=43.9
Q ss_pred cccChhHHHHHHHHHHhc-cchhhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCCCCCCCCchHHHH
Q 044395 241 VILQPQTFASVFAVLIGV-IPGLKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGPNESNLGIRTTVG 315 (408)
Q Consensus 241 ~~~~Pp~iaailglivg~-iP~Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~~~~~~~~~~iv~ 315 (408)
.-..++.+|.++|++++= ...++ +.....+++..+-....+.+++|.++.=. +-.+.+++.++.
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~----------~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~-~i~~~G~~~~~~ 88 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLP----------ARFKPGIKFSSKKLLRLGIVLLGFRLSFS-DILALGWKGLLI 88 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCc----------HHHHhHHHHHHHHHHHHHHHHHCccccHH-HHHHhCccHHHH
Confidence 457889999999999983 44222 34456677888888999999999998632 233445544433
No 34
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=27.21 E-value=1.5e+02 Score=26.26 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHhhhcccccchhhh---HHH-HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 044395 60 LIFNHLATCISLKNFLL---WWF-IPVNVLVSTTFGLILGYLVTLICRPPP 106 (408)
Q Consensus 60 LiFskla~~lt~~~l~~---~w~-ipv~~~l~~~~g~~~g~l~~k~~~~p~ 106 (408)
++-..++..+|.+++++ +|. .-+..+++..++.+.+|+..|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35577888887776655 343 344457777889999999999999885
No 35
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=26.86 E-value=64 Score=32.48 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred HHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 044395 20 LKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLW-WFIPVNVLVSTTFGLILGYLV 98 (408)
Q Consensus 20 lkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~-w~ipv~~~l~~~~g~~~g~l~ 98 (408)
+.+++....|..+. | ++++-++..++= +++.+|+-.|. ++..++.+++.+- +..++-.+...++...+++.+
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 44558889999888 4 677666665554 44499999888 9999999999877 455555555566666668888
Q ss_pred HHHcCCCCCCcceeeeeeecCCC
Q 044395 99 TLICRPPPQFFRFTIIMTAFGNT 121 (408)
Q Consensus 99 ~k~~~~p~~~~~~v~~~~~f~N~ 121 (408)
.|+++..++..+. -...+.||.
T Consensus 247 ~Rl~~~~~g~~g~-a~~ttaG~a 268 (326)
T PRK05274 247 DRLIGGGNGVAGA-AAGSTAGNA 268 (326)
T ss_pred hheeecCCCcchH-HHHHHHHHH
Confidence 8999654433323 233344444
No 36
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=26.24 E-value=1.3e+02 Score=23.50 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 044395 85 LVSTTFGLILGYLVTL 100 (408)
Q Consensus 85 ~l~~~~g~~~g~l~~k 100 (408)
++.-++|...|+..++
T Consensus 50 i~iD~~Sl~aGf~~a~ 65 (74)
T PF09964_consen 50 IFIDAVSLTAGFLYAK 65 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666665554
No 37
>COG4129 Predicted membrane protein [Function unknown]
Probab=25.45 E-value=1.8e+02 Score=29.31 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=65.0
Q ss_pred CcchHHHHhhhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHH-----
Q 044395 7 SEGEDVFSAVLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIP----- 81 (408)
Q Consensus 7 ~~g~~i~~A~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ip----- 81 (408)
++...++.+++-..+.++-|..|.++|.--.-+++ ..-..=-+.+.++.|++.+-|+...+....+.-...++
T Consensus 45 ~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g--~~~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~ 122 (332)
T COG4129 45 CLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFG--QNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIP 122 (332)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccc
Confidence 34445566677777777777777777631112222 22233456778889999999999866555554443332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCC
Q 044395 82 ----VNVLVSTTFGLILGYLVTLICRPPP 106 (408)
Q Consensus 82 ----v~~~l~~~~g~~~g~l~~k~~~~p~ 106 (408)
.+=++...+|.+.|.++.-++.+|+
T Consensus 123 ~~~~~~r~l~~~vG~~~a~lvn~~~~~~~ 151 (332)
T COG4129 123 LFLIFNRFLLVFVGVGVAFLVNLVMPPPD 151 (332)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCCch
Confidence 1247889999999999999888887
No 38
>COG2323 Predicted membrane protein [Function unknown]
Probab=25.12 E-value=2e+02 Score=27.34 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044395 19 LLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFGLILGYLV 98 (408)
Q Consensus 19 vlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~ 98 (408)
++|-+++..+++++. | --++|++|++...=|.=.+.+..++.+...++=...|...+..++...+..+++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666676666 3 357899999999999999999999999988887777777777778888888888887
Q ss_pred HHHcCC
Q 044395 99 TLICRP 104 (408)
Q Consensus 99 ~k~~~~ 104 (408)
.|--++
T Consensus 81 ~ks~~~ 86 (224)
T COG2323 81 LKSRKL 86 (224)
T ss_pred hccHHH
Confidence 766544
No 39
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=24.95 E-value=72 Score=31.74 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=36.9
Q ss_pred hhcccccchhhhHHHH-HHHHHHHHHHHHHHHHHHH-HHcCCCCCCcce
Q 044395 65 LATCISLKNFLLWWFI-PVNVLVSTTFGLILGYLVT-LICRPPPQFFRF 111 (408)
Q Consensus 65 la~~lt~~~l~~~w~i-pv~~~l~~~~g~~~g~l~~-k~~~~p~~~~~~ 111 (408)
++-+++.+++.+++.- .+..++.....+.+++.+. |.+|+|+++.-.
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~L 117 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAIL 117 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6789999999999883 4445667777788888888 999999875544
No 40
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.23 E-value=1.1e+02 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 044395 78 WFIPVNVLVSTTFGLILGYLVTLIC 102 (408)
Q Consensus 78 w~ipv~~~l~~~~g~~~g~l~~k~~ 102 (408)
++..+..++.+++|+++||++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777889999999999887543
No 41
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=23.33 E-value=2.3e+02 Score=30.02 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHH
Q 044395 24 SIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFG 91 (408)
Q Consensus 24 li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g 91 (408)
+....|.=.| +|.|++++-.||.+++.-=.+.+|..+|.-+.++. .+|..-+..+|+.+.++..+|
T Consensus 96 Lv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~G 161 (516)
T COG2978 96 LVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIALG 161 (516)
T ss_pred HHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHhC
Confidence 3333343344 39999999999999999999999999999998885 566777788999998888766
No 42
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.14 E-value=81 Score=27.15 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 044395 84 VLVSTTFGLILGYLVTLICRPP 105 (408)
Q Consensus 84 ~~l~~~~g~~~g~l~~k~~~~p 105 (408)
+++.+++|+++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999997655
No 43
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=22.47 E-value=1.1e+02 Score=23.74 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 044395 79 FIPVNVLVSTTFGLILGYLVTLICRPPP 106 (408)
Q Consensus 79 ~ipv~~~l~~~~g~~~g~l~~k~~~~p~ 106 (408)
.+|+.+++.+++|++.+++...+++-|.
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999998887775
No 44
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=22.24 E-value=1.8e+02 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=33.5
Q ss_pred HHHHhhhcccccchhhh---HHHHHH-HHHHHHHHHHHHHHHHHHHcCCCC
Q 044395 60 LIFNHLATCISLKNFLL---WWFIPV-NVLVSTTFGLILGYLVTLICRPPP 106 (408)
Q Consensus 60 LiFskla~~lt~~~l~~---~w~ipv-~~~l~~~~g~~~g~l~~k~~~~p~ 106 (408)
++-..++.++|.|.+.+ +|+.-+ ..+.+...+.+.+|+..|..|.++
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45667888888776554 444332 336777888899999999999885
No 45
>PRK03818 putative transporter; Validated
Probab=22.17 E-value=2.4e+02 Score=30.48 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=45.6
Q ss_pred cCC-CChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcce
Q 044395 37 LQL-VPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLL-WWFIPVNVLVSTTFGLILGYLVTLICRPPPQFFRF 111 (408)
Q Consensus 37 ~~i-l~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~-~w~ipv~~~l~~~~g~~~g~l~~k~~~~p~~~~~~ 111 (408)
.|+ +++.+...+.++-+.+|.=|. --+-+++. .+.+++ =|-..+..++.++++.+++|+..|+++.+...--+
T Consensus 50 ~~~~~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 124 (552)
T PRK03818 50 FGLTLDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLG 124 (552)
T ss_pred cCcccChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 454 455555556666666666443 22233333 224444 35556677889999999999999999999754444
No 46
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=21.94 E-value=8.4e+02 Score=24.68 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=56.4
Q ss_pred ccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc-
Q 044395 36 KLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWW----FIPVNVLVSTTFGLILGYLVTLICRPPPQFFR- 110 (408)
Q Consensus 36 r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w----~ipv~~~l~~~~g~~~g~l~~k~~~~p~~~~~- 110 (408)
..|+++ +....++-+-+..+|+.++--+ -+.+.+++.++. ++-+...+.+.+|+.+++.+-|-+-. .-||-
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmL-lqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~g-d~Wka~ 122 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLML-LQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKSFIG-DLWKAG 122 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHH-HHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHhhh
Confidence 689995 7778889999999999998765 356777777665 44445555666666666666555433 22332
Q ss_pred eeeeeeecCCCCChHHHHHHHH
Q 044395 111 FTIIMTAFGNTGYIPLAVVSSV 132 (408)
Q Consensus 111 ~v~~~~~f~N~~~LPl~li~sL 132 (408)
..+.++=-|-+-| ++=+|+.
T Consensus 123 gmi~gSytGGSaN--mAAmqaa 142 (384)
T COG5505 123 GMISGSYTGGSAN--MAAMQAA 142 (384)
T ss_pred hheeeeeeCCcch--HHHHHhh
Confidence 3344444444433 4445544
No 47
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=21.03 E-value=2.9e+02 Score=27.72 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHH-HHHHHHHHHHHH
Q 044395 16 VLPLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPV-NVLVSTTFGLIL 94 (408)
Q Consensus 16 ~~pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv-~~~l~~~~g~~~ 94 (408)
.++++-+++-..+|+++. =+|+|-||-+++-+ .+..|-+-| .++.+++++++.+=..-=+ -.++.+.++...
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 456666788889999877 47999999998864 556777766 4899999999988764333 335555555666
Q ss_pred HHHHHHHcCCCCCCcceeeeeeecCCCCChHHHHHHHH
Q 044395 95 GYLVTLICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSV 132 (408)
Q Consensus 95 g~l~~k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL 132 (408)
.++.-|..+-.+..- +.-..+..||.-.-|-++-++-
T Consensus 241 ~~~~dr~i~~~~g~a-G~A~sstAGnavatPaaiA~~d 277 (314)
T PF03812_consen 241 LYLADRLILKGNGVA-GAAISSTAGNAVATPAAIAAAD 277 (314)
T ss_pred HHHHHHHHcCCCCce-eehHHhhhhhhhhhhHHHHHhC
Confidence 677777753222222 3355678899999998887654
No 48
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=20.90 E-value=74 Score=33.93 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHH
Q 044395 18 PLLKLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLWWFIPVNVLVSTTFG 91 (408)
Q Consensus 18 pvlkV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~w~ipv~~~l~~~~g 91 (408)
|-+.+++++..|.=.|- |.|++++-.||.+.+.-=.+.+|.++|.-+.+++-. |..-+-.+|+.++++..+|
T Consensus 79 ~PLG~Vlv~mlgvgvAE-~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~snias-DAg~Vvl~PL~a~iF~~~G 150 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVAE-KSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIAS-DAGYVVLPPLAAMIFAAVG 150 (502)
T ss_pred CcHHHHHHHHHHHHHHH-HhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccc-cceeEeHHhhHHHHHHHcC
Confidence 45677777777776663 899999999999999999999999999999999854 5566667999998887643
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=20.72 E-value=2.5e+02 Score=31.95 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=40.9
Q ss_pred hhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhH--H-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 044395 43 DTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLW--W-FIPVNVLVSTTFGLILGYLVTLICRPPPQ 107 (408)
Q Consensus 43 ~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~--w-~ipv~~~l~~~~g~~~g~l~~k~~~~p~~ 107 (408)
+-...+..++..+|+|. -|..+|-++++..+.+. | .+.+..++.++.=++.+++.++.++.|.+
T Consensus 314 ~l~ekle~~~~~lflPl-FFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ 380 (832)
T PLN03159 314 TLIEKLEDFVSGLLLPL-FFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR 380 (832)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34566777778899985 46668988888877653 2 22222232233334556788899998874
No 50
>PRK01844 hypothetical protein; Provisional
Probab=20.47 E-value=1.7e+02 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 77 WWFIPVNVLVSTTFGLILGYLVTLI 101 (408)
Q Consensus 77 ~w~ipv~~~l~~~~g~~~g~l~~k~ 101 (408)
.|+..+..++..++|.+.|+.++|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667778888999999777653
Done!