Query 044395
Match_columns 408
No_of_seqs 117 out of 310
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.2 0.00098 3.4E-08 65.5 8.9 136 245-401 19-156 (332)
2 3zux_A Transporter, ASBTNM; tr 87.0 0.83 2.8E-05 44.4 6.0 126 21-151 174-310 (332)
3 2nwl_A GLTPH, glutamate sympor 8.6 6.3E+02 0.022 24.8 6.9 54 54-107 55-112 (422)
4 1zcd_A Na(+)/H(+) antiporter 1 5.5 2.1E+02 0.0071 28.1 1.4 92 41-132 248-348 (388)
5 1q90_G Cytochrome B6F complex 5.3 2.3E+02 0.0079 18.2 1.0 10 251-260 6-15 (37)
6 4f4l_A ION transport protein; 5.2 8.7E+02 0.03 18.7 4.8 17 134-150 71-87 (112)
7 1q90_M Cytochrome B6F complex 5.1 7.3E+02 0.025 16.1 4.3 27 76-102 5-31 (39)
8 2iub_A CORA, divalent cation t 5.0 4.6E+02 0.016 24.8 3.6 61 274-341 300-363 (363)
9 1vf5_F Protein PET M; photosyn 4.6 7.6E+02 0.026 15.6 4.1 24 79-102 7-30 (35)
10 2lnk_A Protein S100-A4; EF-han 3.4 4.4E+02 0.015 20.6 1.6 10 2-11 10-19 (113)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.18 E-value=0.00098 Score=65.48 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHhccch-hhhccccCCCchhhHHHHHHHhccchhhHHHHhhccccCCCC-CCCCCCchHHHHHHHHHHH
Q 044395 245 PQTFASVFAVLIGVIPG-LKSFVFGSGAPLGFLTDSLDIVAEAAVPSAMLVLGGMLTEGP-NESNLGIRTTVGIIIARLL 322 (408)
Q Consensus 245 Pp~iaailglivg~iP~-Lk~lf~~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~L~~g~-~~~~~~~~~iv~i~~~Rli 322 (408)
+-.+..+++.++|..=| .-+. ++ ..-..++.++++..|.++.... +..--.+|......+.+++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~~~~-------~~-------~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDTFKW-------AG-------PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp THHHHHHHHHHHHHHCGGGTGG-------GG-------GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchhhhh-------hH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44667777777776532 2111 11 1223478899999999997431 1111246777788899999
Q ss_pred HHHHHHHHHHHHhhhccccccCChhhhHHHHhcccCchHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 323 ILPLIGMGVIYLADKWNFLIHGDELYRFVIFLQYTTPSAILLAAIANLRAYAASEASALLFWQHVFAIFSLAIYLIIYF 401 (408)
Q Consensus 323 llPiigi~iv~~~~k~g~~~~~Dpl~~fVl~L~~~~P~A~~l~~itql~~~~e~e~s~iLfw~Y~~~~~~l~~~~~~~l 401 (408)
++|+++..+.+.. ..||.+...+++..++|++.+...+|++.+.+...+......+-.++++++|+|+.+++
T Consensus 85 i~Pll~~~l~~~~-------~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 85 IMPATAWCLSKLL-------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHT-------TCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999887632 33888999999999999999988899998877667777788999999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=86.96 E-value=0.83 Score=44.45 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=68.6
Q ss_pred HHHHHHHHhHHHhccccCCCChhhhhhhhhhHHHhhhhHHHHHhhhcccccchhhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 044395 21 KLLSIAVFGLTIAHPKLQLVPNDTLKILNKLVFVLFLPCLIFNHLATCISLKNFLLW-WFIPVNVLVSTTFGLILGYLVT 99 (408)
Q Consensus 21 kV~li~~~G~~la~~r~~il~~~~~k~ls~l~~~~flP~LiFskla~~lt~~~l~~~-w~ipv~~~l~~~~g~~~g~l~~ 99 (408)
.+++-...|.+++....+. .+..+|.+..+....+. ..+..-++.+ .+++.+. +.+-+..+++..+++.+||.++
T Consensus 174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s~~~il-liv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVSVAAIV-LIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHHHHHHH-HHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999887311122 12333333332211111 1112222222 2233222 2333456788899999999999
Q ss_pred HHcCCCCCCcceeeeeeecCCCCChHHHHHHHHH----------HHHHHHHHHHHHHhhhhh
Q 044395 100 LICRPPPQFFRFTIIMTAFGNTGYIPLAVVSSVW----------IAYVSFSQWIQVILVYTL 151 (408)
Q Consensus 100 k~~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~----------~aY~~~~~~v~~i~~w~~ 151 (408)
|.+|.+++.+.-+...|+..|+ .+-+++..+.. ..|-..-...+.++.+-|
T Consensus 250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~ 310 (332)
T 3zux_A 250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYW 310 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888776776888998 35544443332 345444444555554444
No 3
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=8.58 E-value=6.3e+02 Score=24.78 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=41.7
Q ss_pred HhhhhHHHHHhhhcccc-c--chhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 044395 54 VLFLPCLIFNHLATCIS-L--KNFLLW-WFIPVNVLVSTTFGLILGYLVTLICRPPPQ 107 (408)
Q Consensus 54 ~~flP~LiFskla~~lt-~--~~l~~~-w~ipv~~~l~~~~g~~~g~l~~k~~~~p~~ 107 (408)
+...|=|+|..+...+. . +++.++ +-.-.++.+++.++..+|.++..++++...
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45667788999888774 4 555554 456677789999999999999999988753
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=5.52 E-value=2.1e+02 Score=28.12 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=54.3
Q ss_pred ChhhhhhhhhhHHHhhhhHHHHHhhhcccccc---hhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHc--CCCCCCc-ce
Q 044395 41 PNDTLKILNKLVFVLFLPCLIFNHLATCISLK---NFLLW--WFIPVNVLVSTTFG-LILGYLVTLIC--RPPPQFF-RF 111 (408)
Q Consensus 41 ~~~~~k~ls~l~~~~flP~LiFskla~~lt~~---~l~~~--w~ipv~~~l~~~~g-~~~g~l~~k~~--~~p~~~~-~~ 111 (408)
.++-++.+...+..+++|-.-|.+.+=+++.+ ++.+- |-+-+..++-=.+| +..+|+..|+. |.|++.+ +-
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 46677888999999999999999999998774 33221 11111112222233 23356666654 6777532 23
Q ss_pred eeeeeecCCCCChHHHHHHHH
Q 044395 112 TIIMTAFGNTGYIPLAVVSSV 132 (408)
Q Consensus 112 v~~~~~f~N~~~LPl~li~sL 132 (408)
....+.-.|++-..=.++-++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~l 348 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASL 348 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHH
Confidence 356666677776444444444
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.34 E-value=2.3e+02 Score=18.20 Aligned_cols=10 Identities=20% Similarity=0.943 Sum_probs=6.4
Q ss_pred HHHHHHhccc
Q 044395 251 VFAVLIGVIP 260 (408)
Q Consensus 251 ilglivg~iP 260 (408)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566666666
No 6
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=5.16 E-value=8.7e+02 Score=18.72 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 044395 134 IAYVSFSQWIQVILVYT 150 (408)
Q Consensus 134 ~aY~~~~~~v~~i~~w~ 150 (408)
..|+..+..+++.+.-.
T Consensus 71 ~iyFi~fi~i~~fi~lN 87 (112)
T 4f4l_A 71 WVFFIPFIMLTTFTVLN 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666665543
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.06 E-value=7.3e+02 Score=16.06 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044395 76 LWWFIPVNVLVSTTFGLILGYLVTLIC 102 (408)
Q Consensus 76 ~~w~ipv~~~l~~~~g~~~g~l~~k~~ 102 (408)
+..-+.......+.+|..+|+++-|+-
T Consensus 5 EIf~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333445566778888999999988874
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=5.03 E-value=4.6e+02 Score=24.84 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred hhHHHHHHHhccchhhHHHHh--hccccCCCCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044395 274 GFLTDSLDIVAEAAVPSAMLV--LGGMLTEGPN-ESNLGIRTTVGIIIARLLILPLIGMGVIYLADKWNFL 341 (408)
Q Consensus 274 ~~l~ds~~~lG~a~VPl~llv--LGa~L~~g~~-~~~~~~~~iv~i~~~RlillPiigi~iv~~~~k~g~~ 341 (408)
+-+|.-++.+...+.|+.++. -|-|+...|. ..+.++..++++.+ +++++..+.++|-||+
T Consensus 300 N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~-------~i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 300 NEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMG-------VIAVIMVVYFKKKKWL 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH-------HHHHHHHTTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHH-------HHHHHHHHHHHHcccC
Confidence 456667778888889988873 6778765554 23345544444332 2444445557777773
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.56 E-value=7.6e+02 Score=15.59 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 044395 79 FIPVNVLVSTTFGLILGYLVTLIC 102 (408)
Q Consensus 79 ~ipv~~~l~~~~g~~~g~l~~k~~ 102 (408)
-+.......+.+|..+|+++-|+-
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhheee
Confidence 345556778888999999888864
No 10
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=3.42 E-value=4.4e+02 Score=20.60 Aligned_cols=10 Identities=40% Similarity=0.600 Sum_probs=3.8
Q ss_pred CCCCCCcchH
Q 044395 2 HGSLSSEGED 11 (408)
Q Consensus 2 ~~~~~~~g~~ 11 (408)
||||.|.++-
T Consensus 10 ~~~~~s~~~~ 19 (113)
T 2lnk_A 10 HGSMACPLEK 19 (113)
T ss_dssp ---CCCHHHH
T ss_pred CCCCCCCchh
Confidence 5666555554
Done!