Query 044395
Match_columns 408
No_of_seqs 117 out of 310
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 04:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 11.3 32 0.0023 19.9 0.6 28 240-267 5-32 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 5.0 1.2E+02 0.0088 16.9 1.0 10 251-260 6-15 (30)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 4.0 3.5E+02 0.025 14.6 2.5 18 134-151 4-21 (30)
4 d1jb0m_ f.23.19.1 (M:) Subunit 3.8 1.6E+02 0.011 16.5 0.9 13 250-262 8-20 (31)
5 d1v54l_ f.23.6.1 (L:) Mitochon 3.5 5.1E+02 0.037 15.7 3.7 28 74-101 14-41 (46)
6 d1tbaa_ a.15.1.1 (A:) TAF(II)2 3.4 1.5E+02 0.011 19.7 0.7 15 38-52 36-50 (67)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 3.3 4.2E+02 0.031 14.4 2.5 23 8-33 3-25 (32)
8 d1lghb_ f.3.1.1 (B:) Light-har 2.9 5.8E+02 0.042 15.3 4.7 38 67-104 4-41 (43)
9 d1tm9a_ a.225.1.1 (A:) Hypothe 2.9 3.8E+02 0.028 19.3 2.5 22 325-346 94-115 (137)
10 d1g8fa3 c.37.1.15 (A:390-511) 2.7 3.7E+02 0.027 19.9 2.4 28 105-132 1-30 (122)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.30 E-value=32 Score=19.89 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.5
Q ss_pred ccccChhHHHHHHHHHHhccchhhhccc
Q 044395 240 SVILQPQTFASVFAVLIGVIPGLKSFVF 267 (408)
Q Consensus 240 ~~~~~Pp~iaailglivg~iP~Lk~lf~ 267 (408)
++|||=-+.+.+-|...|..-|+-+.|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5788999999999999999888877775
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.00 E-value=1.2e+02 Score=16.88 Aligned_cols=10 Identities=20% Similarity=0.943 Sum_probs=7.1
Q ss_pred HHHHHHhccc
Q 044395 251 VFAVLIGVIP 260 (408)
Q Consensus 251 ilglivg~iP 260 (408)
+.|++.|+||
T Consensus 6 l~GivlGlip 15 (30)
T d1q90g_ 6 LCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHhhHH
Confidence 4577777777
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.00 E-value=3.5e+02 Score=14.64 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 044395 134 IAYVSFSQWIQVILVYTL 151 (408)
Q Consensus 134 ~aY~~~~~~v~~i~~w~~ 151 (408)
++|+.+|.-+-..+.|..
T Consensus 4 i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 578888887777776654
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.79 E-value=1.6e+02 Score=16.47 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=8.8
Q ss_pred HHHHHHHhccchh
Q 044395 250 SVFAVLIGVIPGL 262 (408)
Q Consensus 250 ailglivg~iP~L 262 (408)
..++++|+++|-+
T Consensus 8 v~valvial~pg~ 20 (31)
T d1jb0m_ 8 VYVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567778888743
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.51 E-value=5.1e+02 Score=15.74 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044395 74 FLLWWFIPVNVLVSTTFGLILGYLVTLI 101 (408)
Q Consensus 74 l~~~w~ipv~~~l~~~~g~~~g~l~~k~ 101 (408)
+.+=|-+-....+++..|+..-.++.|-
T Consensus 14 v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 14 VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 4455777777788999999988887763
No 6
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.37 E-value=1.5e+02 Score=19.68 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=13.1
Q ss_pred CCCChhhhhhhhhhH
Q 044395 38 QLVPNDTLKILNKLV 52 (408)
Q Consensus 38 ~il~~~~~k~ls~l~ 52 (408)
.+||+|.+|+|+.+.
T Consensus 36 s~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 36 TGFDAELRENIGSLS 50 (67)
T ss_dssp SSCCTTTHHHHTTCT
T ss_pred cccCHHHHHHHHHHh
Confidence 389999999999876
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.28 E-value=4.2e+02 Score=14.40 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=15.1
Q ss_pred cchHHHHhhhhHHHHHHHHHHhHHHh
Q 044395 8 EGEDVFSAVLPLLKLLSIAVFGLTIA 33 (408)
Q Consensus 8 ~g~~i~~A~~pvlkV~li~~~G~~la 33 (408)
+|+++|.-... .+.-+++|.+.|
T Consensus 3 lgavfyivfia---lffgiavgiifa 25 (32)
T d2e74e1 3 LGAVFYIVFIA---LFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred eeeeHHHHHHH---HHHHHHhhheee
Confidence 46666665544 566677887777
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.90 E-value=5.8e+02 Score=15.29 Aligned_cols=38 Identities=3% Similarity=-0.025 Sum_probs=28.7
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 044395 67 TCISLKNFLLWWFIPVNVLVSTTFGLILGYLVTLICRP 104 (408)
Q Consensus 67 ~~lt~~~l~~~w~ipv~~~l~~~~g~~~g~l~~k~~~~ 104 (408)
+.+|.++.+++-=+-+.+...|..-.+++.+++.+-|+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677888888777777777777777788887777654
No 9
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=2.86 E-value=3.8e+02 Score=19.33 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhccccccCCh
Q 044395 325 PLIGMGVIYLADKWNFLIHGDE 346 (408)
Q Consensus 325 Piigi~iv~~~~k~g~~~~~Dp 346 (408)
|+|...+.|.+++.|++..+++
T Consensus 94 ~aiifci~yflyhf~fl~d~nk 115 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNNK 115 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCC
T ss_pred ceehhhHHHHHHHhcccccccH
Confidence 4445556678889998866554
No 10
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.71 E-value=3.7e+02 Score=19.87 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCcceeeeeeecCCCC--ChHHHHHHHH
Q 044395 105 PPQFFRFTIIMTAFGNTG--YIPLAVVSSV 132 (408)
Q Consensus 105 p~~~~~~v~~~~~f~N~~--~LPl~li~sL 132 (408)
|++.+||++...+..|+| .|-.+|...+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHH
Done!