BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044398
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 51 HLRLFWHDIL----SGTSPTAVQVVPPVANSSTA------FGLMNMIDDPLTEGPELSSK 100
+L ++HDIL + + T+ V P S T FG + + DDP+T LSSK
Sbjct: 33 NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSK 92
Query: 101 MLGRAQGFYAAASQQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMPVIGGTGV 160
+GRAQGFY ++ ++ F + G T T G + + +K R++ V GGTG
Sbjct: 93 QVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQG-TITFAGADPIVAKTRDISVTGGTGD 151
Query: 161 FRFARGYVQAKTYKFDQNSGDATVEYNCYV 190
F RG T F+ G+A Y+
Sbjct: 152 FFMHRGIATITTDAFE---GEAYFRLGVYI 178
>sp|P03705|VLYS_LAMBD Holin OS=Enterobacteria phage lambda GN=S PE=3 SV=1
Length = 107
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 111 AASQQEVGLLMAMNFAFIKGKYNGSTFT 138
AA +Q +G ++A A+++G+YNG FT
Sbjct: 15 AAKEQGIGAILAFAMAYLRGRYNGGAFT 42
>sp|Q03MK9|SYP_STRTD Proline--tRNA ligase OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=proS PE=3 SV=2
Length = 620
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 94 GPELSSKMLGRAQGFYAAASQQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMP 153
P L + L R G Y + L N FI G + TFTVL R+ V S +++P
Sbjct: 71 APALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKS-YKQLP 129
Query: 154 V-------------IGGTGVFRFARGYVQAKTYKFDQNSGDATVEYNCYVLHY 193
+ G+ R R ++ Y F QN D V Y Y Y
Sbjct: 130 LNLYQIQSKYRDEKRPRNGLLR-TREFIMKDAYSFHQNYEDLDVTYEDYRKAY 181
>sp|P09962|VLY1_BPP22 Holin OS=Enterobacteria phage P22 GN=13 PE=1 SV=1
Length = 108
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 111 AASQQEVGLLMAMNFAFIKGKYNGSTF 137
AA +Q +G ++A A+++G+YNG F
Sbjct: 16 AAKEQGIGAILAFAMAYLRGRYNGGAF 42
>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1
SV=2
Length = 919
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 70 VVPPVANSSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQQEVG--LLMAM---- 123
V+ PV N T F L N D L + K +G + A E G LL+++
Sbjct: 29 VISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRS 88
Query: 124 ---NFAFIKGKYNGSTFTVLGRNTVFSKVREMPVIGGTGVFRFARGYVQAKTY--KFDQN 178
+F F KG + +F+ GR V +K + G R +V KTY +D+
Sbjct: 89 VLHHFHF-KGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDET 147
Query: 179 SG-DATVEYNCYVL 191
+ D T + C+V+
Sbjct: 148 TCIDWTDDSRCFVV 161
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 40 KLFGLNEEKFTHLRLFWHDILSGTSPTAVQVVPPVANSSTAFGLMNMIDDPLTEGPELSS 99
K F N THLR+ + I ++P+ ++ P + +ST F L+ I L + +S
Sbjct: 787 KEFTKNHLTLTHLRILFTLIAPSSNPS---IMAPKSKNSTVFKLLTNICFLLCKNSIISD 843
Query: 100 KMLGRAQGFYAAASQQEVGLLMAMNFAFIKGKY--NGSTFTVLGRNTV 145
+L + GF + ++ L A+I + ST V N+V
Sbjct: 844 TLLDQFIGFVFTSVDSQLLTLPKEQLAWIAWIFVKKQSTMVVGATNSV 891
>sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2
SV=1
Length = 918
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 70 VVPPVANSSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQQEVG--LLMAM---- 123
V+ PV N T F L N D L + K +G + A E G LL+++
Sbjct: 29 VISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRS 88
Query: 124 ---NFAFIKGKYNGSTFTVLGRNTVFSKVREMPVIGGTGVFRFARGYVQAKTY--KFDQN 178
+F F KG + +F+ GR V +K + G R +V KTY +D+
Sbjct: 89 VLHHFHF-KGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDET 147
Query: 179 SG-DATVEYNCYVL 191
+ D T + C+V+
Sbjct: 148 TCIDWTDDSRCFVV 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,974,602
Number of Sequences: 539616
Number of extensions: 2644763
Number of successful extensions: 6889
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6885
Number of HSP's gapped (non-prelim): 9
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)