Query 044398
Match_columns 193
No_of_seqs 126 out of 538
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 2.4E-53 5.2E-58 339.8 19.4 144 48-192 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.6 0.0015 3.3E-08 53.5 11.4 118 47-175 5-127 (176)
3 PLN02343 allene oxide cyclase 97.0 0.025 5.5E-07 48.1 12.8 90 79-175 85-178 (229)
4 PF11528 DUF3224: Protein of u 80.8 26 0.00056 27.9 9.8 89 99-192 40-133 (134)
5 PF06347 SH3_4: Bacterial SH3 18.1 78 0.0017 20.4 1.4 16 90-105 6-21 (55)
6 PF08239 SH3_3: Bacterial SH3 17.7 99 0.0021 19.5 1.8 16 90-105 4-19 (55)
7 PF07436 Curto_V3: Curtovirus 13.5 1.6E+02 0.0035 21.6 2.1 48 26-73 17-68 (87)
8 PF01715 IPPT: IPP transferase 12.3 69 0.0015 27.7 -0.1 14 149-162 55-69 (253)
9 PF14428 SCP1201-deam: SCP1.20 12.1 1.9E+02 0.0041 22.9 2.3 22 133-159 113-134 (135)
10 PF11849 DUF3369: Domain of un 11.2 2.3E+02 0.0051 22.7 2.7 31 131-161 53-85 (174)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=2.4e-53 Score=339.80 Aligned_cols=144 Identities=50% Similarity=0.881 Sum_probs=135.5
Q ss_pred cceEEEEEeeeecCCCCcceEEEeCCCCCCCCCcceEEEEeeccccCCCCCCcceeEEEEEEEEeccCcceEEEEEEEEE
Q 044398 48 KFTHLRLFWHDILSGTSPTAVQVVPPVANSSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQQEVGLLMAMNFAF 127 (193)
Q Consensus 48 ~~t~l~fY~Hd~~sg~n~t~~~Va~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF 127 (193)
|++||+|||||+++|||+|+++|+.++.+...+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++|
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~vF 80 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLVF 80 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEEE
Confidence 57899999999999999999999988444445999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCcEEEEecccccCCcceeeeeeeccceeEeeeEEEEEEEEEeeCCCCCeEEEEEEEEEe
Q 044398 128 IKGKYNGSTFTVLGRNTVFSKVREMPVIGGTGVFRFARGYVQAKTYKFDQNSGDATVEYNCYVLH 192 (193)
Q Consensus 128 ~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~E~~V~v~h 192 (193)
++++||||||+++|+++..+++||||||||||+|||||||++.+++ .+...+++|+|||||++|
T Consensus 81 ~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 81 EDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 9999999999999999988999999999999999999999999999 334478999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.57 E-value=0.0015 Score=53.51 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=73.7
Q ss_pred CcceEEEEEeeeecCCCCcce-EEEeCCCCCCCCCcceEEEEeeccccCCCCCCcceeEEEEEEEEecc----CcceEEE
Q 044398 47 EKFTHLRLFWHDILSGTSPTA-VQVVPPVANSSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQ----QEVGLLM 121 (193)
Q Consensus 47 ~~~t~l~fY~Hd~~sg~n~t~-~~Va~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~----~~~~~~~ 121 (193)
.|...|++|=-+-+- .++.+ +++- ..+....|..+=+.|+|++|.. -+.+|--+|+-+.-.. .+..+=-
T Consensus 5 ~kvqel~vyeiNErd-R~SPa~L~ls---~k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEa 78 (176)
T PF06351_consen 5 TKVQELSVYEINERD-RGSPAYLRLS---QKSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEA 78 (176)
T ss_dssp ---EEEEEEEE--S--S--S--B--S---SSSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEE
T ss_pred cceEEEEEEEEcccc-cCCCcEEEcc---cccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEE
Confidence 344556666433332 22233 3442 2344579999999999999977 7889999999776432 3334555
Q ss_pred EEEEEEecCcccCcEEEEecccccCCcceeeeeeeccceeEeeeEEEEEEEEEe
Q 044398 122 AMNFAFIKGKYNGSTFTVLGRNTVFSKVREMPVIGGTGVFRFARGYVQAKTYKF 175 (193)
Q Consensus 122 ~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 175 (193)
.+++.|-+ .| .|+++|..... +..-++|.||||-|+.|+|-++.+..-+
T Consensus 79 iySfyfGd---yG-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 79 IYSFYFGD---YG-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEE-GG---GE-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEecc---cc-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 66777754 24 79999987543 5678899999999999999999887754
No 3
>PLN02343 allene oxide cyclase
Probab=96.98 E-value=0.025 Score=48.11 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=71.3
Q ss_pred CCcceEEEEeeccccCCCCCCcceeEEEEEEEEecc----CcceEEEEEEEEEecCcccCcEEEEecccccCCcceeeee
Q 044398 79 TAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQ----QEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMPV 154 (193)
Q Consensus 79 ~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~----~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aV 154 (193)
...|+.+=|-+.|++|.- -|.+|--.|+-+.-.. .+..+=..+++.|-| -| .|+++|..... +..-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD---yG-HisvqGpylty-eDt~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD---YG-HISVQGPYLTY-EDTYLAI 157 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC---cc-eeEEecccccc-ccceEEe
Confidence 579999999999998865 6789999999775433 345566778888855 24 79999987543 4568999
Q ss_pred eeccceeEeeeEEEEEEEEEe
Q 044398 155 IGGTGVFRFARGYVQAKTYKF 175 (193)
Q Consensus 155 VGGTG~Fr~ArGya~~~t~~~ 175 (193)
.||+|-|+.|+|-++...+-+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999999877654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=80.83 E-value=26 Score=27.85 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=51.3
Q ss_pred CcceeEEEEEEEEecc-CcceEEEEEEEEE-ecCcccCc-EEEEecccccCCcceeeeee--eccceeEeeeEEEEEEEE
Q 044398 99 SKMLGRAQGFYAAASQ-QEVGLLMAMNFAF-IKGKYNGS-TFTVLGRNTVFSKVREMPVI--GGTGVFRFARGYVQAKTY 173 (193)
Q Consensus 99 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~rE~aVV--GGTG~Fr~ArGya~~~t~ 173 (193)
-.+.|++++-|+.+-. ++.+.+.++--+= +-+--+|| .|+-.|.........+|-|| -|||++...+|-...+..
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 3467888888887654 4545555543221 11123664 33344443333345789999 999999999999886654
Q ss_pred EeeCCCCCeEEEEEEEEEe
Q 044398 174 KFDQNSGDATVEYNCYVLH 192 (193)
Q Consensus 174 ~~~~~~~~~v~E~~V~v~h 192 (193)
. +...++|+..+.+
T Consensus 120 ~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 120 E-----GQHAYDFEYTLPD 133 (134)
T ss_dssp T-----TCEEEEEEEEEEE
T ss_pred C-----CCceeeEEEECCC
Confidence 4 3346677766543
No 5
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=18.09 E-value=78 Score=20.38 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.7
Q ss_pred ccccCCCCCCcceeEE
Q 044398 90 PLTEGPELSSKMLGRA 105 (193)
Q Consensus 90 ~lt~Gp~~~Sk~VGRA 105 (193)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 6788999999998776
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=17.67 E-value=99 Score=19.51 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.9
Q ss_pred ccccCCCCCCcceeEE
Q 044398 90 PLTEGPELSSKMLGRA 105 (193)
Q Consensus 90 ~lt~Gp~~~Sk~VGRA 105 (193)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4678899999988875
No 7
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=13.52 E-value=1.6e+02 Score=21.60 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=23.5
Q ss_pred hccccccceeeccccccCCC----CCcceEEEEEeeeecCCCCcceEEEeCC
Q 044398 26 ISGEAHGFAKALDEKLFGLN----EEKFTHLRLFWHDILSGTSPTAVQVVPP 73 (193)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~----~~~~t~l~fY~Hd~~sg~n~t~~~Va~~ 73 (193)
+-++.++||++.-..+..-+ ....-.+-+-+++++...+++.-+.+++
T Consensus 17 llQsgtNfYGTfqSgsiS~kLS~l~sr~DeLFl~iQQvvy~R~~sr~r~vd~ 68 (87)
T PF07436_consen 17 LLQSGTNFYGTFQSGSISRKLSSLSSRFDELFLKIQQVVYTRYPSRDRAVDS 68 (87)
T ss_pred HHhcCCceeeeeccchHHHHHHHHHHHHHHHHHHHHHhheeccCccccccCc
Confidence 35777889987654322110 0111122233456665555555555544
No 8
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=12.28 E-value=69 Score=27.71 Aligned_cols=14 Identities=36% Similarity=0.983 Sum_probs=8.4
Q ss_pred ceeeee-eeccceeE
Q 044398 149 VREMPV-IGGTGVFR 162 (193)
Q Consensus 149 ~rE~aV-VGGTG~Fr 162 (193)
.+.+|| |||||-|-
T Consensus 55 rgk~PIlvGGTglYi 69 (253)
T PF01715_consen 55 RGKIPILVGGTGLYI 69 (253)
T ss_dssp TT-EEEEEES-HHHH
T ss_pred cCCeEEEECChHHHH
Confidence 355666 99999763
No 9
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=12.08 E-value=1.9e+02 Score=22.90 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=0.0
Q ss_pred cCcEEEEecccccCCcceeeeeeeccc
Q 044398 133 NGSTFTVLGRNTVFSKVREMPVIGGTG 159 (193)
Q Consensus 133 ~GSTL~v~G~~~~~~~~rE~aVVGGTG 159 (193)
+||||+|.+++. ++-..++|+|
T Consensus 113 ~GstLtV~~~~~-----~~~~~~~g~g 134 (135)
T PF14428_consen 113 EGSTLTVHWPGG-----RGPVTLRGTG 134 (135)
T ss_pred CCCEEEEEeeCC-----CceeEEeccC
No 10
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=11.16 E-value=2.3e+02 Score=22.70 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=0.0
Q ss_pred cccCcEEEE--ecccccCCcceeeeeeecccee
Q 044398 131 KYNGSTFTV--LGRNTVFSKVREMPVIGGTGVF 161 (193)
Q Consensus 131 ~~~GSTL~v--~G~~~~~~~~rE~aVVGGTG~F 161 (193)
+.+.+.+.. .+..+......++-|++|||+|
T Consensus 53 ~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f 85 (174)
T PF11849_consen 53 GLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRF 85 (174)
T ss_pred CCCCCeEEEecccccCCCCCCCCEEEEEEeccc
Done!