Query 044398
Match_columns 193
No_of_seqs 126 out of 538
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.6 1.2E-06 4.1E-11 71.4 13.5 103 77-191 41-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.2 7.2E-06 2.5E-10 67.0 9.9 90 79-175 51-144 (195)
3 2q03_A Uncharacterized protein 48.8 87 0.003 23.9 10.7 74 99-172 45-123 (138)
4 2ooj_A Hypothetical protein; s 35.4 1.5E+02 0.005 22.6 10.6 75 99-173 41-121 (141)
5 2qqr_A JMJC domain-containing 27.3 69 0.0024 24.0 4.0 57 77-153 62-118 (118)
6 2xdp_A Lysine-specific demethy 26.6 80 0.0027 23.8 4.3 57 77-153 63-119 (123)
7 3h6j_A Neuraminidase, sialidas 24.6 79 0.0027 27.2 4.4 56 115-172 371-436 (438)
8 2lif_A Core protein P21; signa 18.3 38 0.0013 19.1 0.0 17 12-29 6-22 (27)
9 2krs_A Probable enterotoxin; a 13.3 76 0.0026 20.9 1.4 16 90-105 12-27 (74)
10 2kq8_A Cell WALL hydrolase; GF 10.8 80 0.0027 20.5 0.8 16 90-105 13-28 (70)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.58 E-value=1.2e-06 Score=71.35 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=80.7
Q ss_pred CCCCcceEEEEeeccccCCCCCCcceeEEEEEEEEec----cCcceEEEEEEEEEecCcccCcEEEEecccccCCcceee
Q 044398 77 SSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAAS----QQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREM 152 (193)
Q Consensus 77 ~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~ 152 (193)
+...-|..+.++++|.+|.. -+.||.-+|+-+... +.+..+-..+++.|-+. | .|+++|..... +...+
T Consensus 41 ~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~L 113 (188)
T 2brj_A 41 LMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFL 113 (188)
T ss_dssp SSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEE
T ss_pred cCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-cccee
Confidence 34578999999999997765 689999999977764 34456777788888652 4 79999995322 55789
Q ss_pred eeeeccceeEeeeEEEEEEEEEeeCCCCCeEEEEEEEEE
Q 044398 153 PVIGGTGVFRFARGYVQAKTYKFDQNSGDATVEYNCYVL 191 (193)
Q Consensus 153 aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~E~~V~v~ 191 (193)
||.||||.|+.|+|.++.+...+. ..++|.+|+.
T Consensus 114 AITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 114 AITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred eEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 999999999999999999988752 2477777764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.22 E-value=7.2e-06 Score=67.04 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=71.5
Q ss_pred CCcceEEEEeeccccCCCCCCcceeEEEEEEEEec----cCcceEEEEEEEEEecCcccCcEEEEecccccCCcceeeee
Q 044398 79 TAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAAS----QQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMPV 154 (193)
Q Consensus 79 ~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aV 154 (193)
...|+.+.+.++|++|.. -+-||...|+-+... +.+..+--.+++.|.+ .| +|+++|..-. -+..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEE
Confidence 469999999999999987 688999999977653 2334455667778865 35 7999998643 24567999
Q ss_pred eeccceeEeeeEEEEEEEEEe
Q 044398 155 IGGTGVFRFARGYVQAKTYKF 175 (193)
Q Consensus 155 VGGTG~Fr~ArGya~~~t~~~ 175 (193)
+||||.|+.|+|-++...+-+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999999877664
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=48.78 E-value=87 Score=23.87 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=45.3
Q ss_pred CcceeEEEEEEEEecc-CcceEEEEEEEEE-ecCcccCc-EEEEecccccCCcceeeeeee--ccceeEeeeEEEEEEE
Q 044398 99 SKMLGRAQGFYAAASQ-QEVGLLMAMNFAF-IKGKYNGS-TFTVLGRNTVFSKVREMPVIG--GTGVFRFARGYVQAKT 172 (193)
Q Consensus 99 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~t 172 (193)
-.+.|+.++-++.+-. ++...++++-.+= .-+.-+|| .|+-.|...-......|-||= |||++...+|-...+.
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 4467888888887655 4444444442211 11123564 344444443334457888987 9999999999998753
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=35.41 E-value=1.5e+02 Score=22.63 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=45.4
Q ss_pred CcceeEEEEEEEEeccC--cceEEEEEEEEE-ecCcccCc-EEEEecccccCCcceeeeeee--ccceeEeeeEEEEEEE
Q 044398 99 SKMLGRAQGFYAAASQQ--EVGLLMAMNFAF-IKGKYNGS-TFTVLGRNTVFSKVREMPVIG--GTGVFRFARGYVQAKT 172 (193)
Q Consensus 99 Sk~VGRAQG~~~~~s~~--~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~t 172 (193)
-.+.|+.++-++.+-.+ +...++++-.+= .-+.-+|| .|+-.|...-......|-||= |||++...+|-...+.
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~ 120 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISI 120 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 34678888888877663 344444442211 11123564 344444444334567888987 9999999999998764
Q ss_pred E
Q 044398 173 Y 173 (193)
Q Consensus 173 ~ 173 (193)
.
T Consensus 121 ~ 121 (141)
T 2ooj_A 121 E 121 (141)
T ss_dssp E
T ss_pred c
Confidence 3
No 5
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=27.32 E-value=69 Score=23.97 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=36.7
Q ss_pred CCCCcceEEEEeeccccCCCCCCcceeEEEEEEEEeccCcceEEEEEEEEEecCcccCcEEEEecccccCCcceeee
Q 044398 77 SSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMP 153 (193)
Q Consensus 77 ~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~a 153 (193)
++..-|..+-+.| ++|.-.+++-+|+ .....+++.|+| ||. ..+-|+.+.....|+|
T Consensus 62 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~Y~V~feD----gs~-~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 62 GPPAEGEVVQVRW--TDGQVYGAKFVAS-------------HPIQMYQVEFED----GSQ-LVVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEEETT----SCE-EEECGGGEEETTSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEeeeEEece-------------eEEEEEEEEECC----CCE-EEEcHHHeeccccCCc
Confidence 4567888888888 7787666666654 334578899988 444 4445665544444443
No 6
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.57 E-value=80 Score=23.77 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=37.1
Q ss_pred CCCCcceEEEEeeccccCCCCCCcceeEEEEEEEEeccCcceEEEEEEEEEecCcccCcEEEEecccccCCcceeee
Q 044398 77 SSTAFGLMNMIDDPLTEGPELSSKMLGRAQGFYAAASQQEVGLLMAMNFAFIKGKYNGSTFTVLGRNTVFSKVREMP 153 (193)
Q Consensus 77 ~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~a 153 (193)
++..-|..+-+.| ++|.-.+++.+|+ .....+++.|+|| | ...+-|+.+.....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 4567888888888 6777665555544 3345778999984 4 44556766655555554
No 7
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=24.61 E-value=79 Score=27.15 Aligned_cols=56 Identities=27% Similarity=0.387 Sum_probs=36.5
Q ss_pred CcceEEEEEEEEEecCcccCcEEEEe-cccccCCcceeeeeeecccee---------EeeeEEEEEEE
Q 044398 115 QEVGLLMAMNFAFIKGKYNGSTFTVL-GRNTVFSKVREMPVIGGTGVF---------RFARGYVQAKT 172 (193)
Q Consensus 115 ~~~~~~~~~~~vF~~g~~~GSTL~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArGya~~~t 172 (193)
+...|-..|--.|++|.+|||--++. |.-.+ ....-+-|=|||.| |.|.||...+.
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 34457777888899999999855442 32222 22333556688887 77888877653
No 8
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=18.29 E-value=38 Score=19.14 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhccc
Q 044398 12 LNIFFIFSFFFIIFISGE 29 (193)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (193)
|-|++ |.|++|++.+++
T Consensus 6 fsiFl-LaLlscLt~Pas 22 (27)
T 2lif_A 6 FSIFL-LALLSCITVPVS 22 (27)
Confidence 44553 334588876543
No 9
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=13.32 E-value=76 Score=20.87 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.5
Q ss_pred ccccCCCCCCcceeEE
Q 044398 90 PLTEGPELSSKMLGRA 105 (193)
Q Consensus 90 ~lt~Gp~~~Sk~VGRA 105 (193)
.|+.||+.++++||++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999988774
No 10
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=10.80 E-value=80 Score=20.49 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.5
Q ss_pred ccccCCCCCCcceeEE
Q 044398 90 PLTEGPELSSKMLGRA 105 (193)
Q Consensus 90 ~lt~Gp~~~Sk~VGRA 105 (193)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999874
Done!